Fri Nov 7 17:05:38 UTC 2025 I: starting to build python-cgecore/forky/amd64 on jenkins on '2025-11-07 17:05' Fri Nov 7 17:05:38 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/63117/console.log Fri Nov 7 17:05:38 UTC 2025 I: Downloading source for forky/python-cgecore=1.5.6+ds-2 --2025-11-07 17:05:38-- http://deb.debian.org/debian/pool/main/p/python-cgecore/python-cgecore_1.5.6%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2148 (2.1K) [text/prs.lines.tag] Saving to: ‘python-cgecore_1.5.6+ds-2.dsc’ 0K .. 100% 231M=0s 2025-11-07 17:05:38 (231 MB/s) - ‘python-cgecore_1.5.6+ds-2.dsc’ saved [2148/2148] Fri Nov 7 17:05:38 UTC 2025 I: python-cgecore_1.5.6+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cgecore Binary: python3-cgecore Architecture: all Version: 1.5.6+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/genomicepidemiology/cge_core_module/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-cgecore Vcs-Git: https://salsa.debian.org/med-team/python-cgecore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython Package-List: python3-cgecore deb python optional arch=all Checksums-Sha1: 468c6d2be57dfd1935f28426b4b37d039f8e3fb1 26276 python-cgecore_1.5.6+ds.orig.tar.xz b82660b593cabd52eda5aab055c15d46d9b8c409 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz Checksums-Sha256: c8314e290afb2dea6789fa3baea08d26166c967ec0f49c402eae9b1bf9e79ad2 26276 python-cgecore_1.5.6+ds.orig.tar.xz 5930364ed1c3c6210f1ad93ed6ebe80b21d29fe6f55c14896948bb6c3a504eeb 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz Files: baed19076f0ec4a42eb2d68800d4128f 26276 python-cgecore_1.5.6+ds.orig.tar.xz 8b5b7eacb24c932d4ebbda1ff0cdb593 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmc8/nMRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBovVw/8CjoCNziCnjq8PnEQ90kmLjrQHC2BoJI4 YrtFXbzt5SU3LkmMhCbD5WvaMhohLbxlp0B+BN+17hefDLPxn/zT9fSjAZCcDdFw T5/l1Pfioa6BQM4AE8E7u/5ijLNUt4VEdTKkp2dreIu/va9wzZKXAWp7qSzEEF5f nS5M8JvCDABd1vTJJxOwk3w1X7twgYvV2jlrkGrDymkkbZ1BBxRYH4V4uYNGISjF HaiUtPj9qD6daPp3dRyAF/4McDTgGy0kCBqNTGh53z22SN3fgESvlrsLxxltlACL O0n+/pF1zMb3nLgB4G4KL4L6qtF+oZIk2L3yUYAO1jI04fCqKxyVXBShCLd3mc+9 yiYRmbAjHep6z4HoHTD/zVysuGN78k7XhXjww379/k00YBRT8a7widrvaPzTjLzF S7Lfi/g5hQSYb4K5gLnVxedNYxFwySiscqSyp6nTqN9K2Zgul5qZCS0dFx5HTLqn yu/YbBtwd0NRsM2CEQocceF4xzOBpbyJJj3I/JjAo6lZQ6oGPFvWi+vkYA8ILVGM 4HFEABv07j0WSTEELDRM/1LpNpVM8CojbCUexBSobho1qhHqEICoo7LsswPr2LkS wfTg+ME0FM3hdBHkfsmvyRo6D8jofxEsvqp+L/kBUuqyo2HMNe7cDsgwFBwyoIIe ga/1CdNnlFQ= =BXSl -----END PGP SIGNATURE----- Fri Nov 7 17:05:38 UTC 2025 I: Checking whether the package is not for us Fri Nov 7 17:05:38 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Fri Nov 7 17:05:38 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Fri Nov 7 17:07:07 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 10 11:28:39 -12 2026 I: pbuilder-time-stamp: 1796945319 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] tar: ./dev/pts: time stamp 2028-01-10 12:45:03 is 34218983.352372662 s in the future tar: ./dev/full: time stamp 2028-01-10 12:45:03 is 34218983.35225916 s in the future tar: ./dev/zero: time stamp 2028-01-10 12:45:03 is 34218983.35216132 s in the future tar: ./dev/tty: time stamp 2028-01-10 12:45:03 is 34218983.352118867 s in the future tar: ./dev/random: time stamp 2028-01-10 12:45:03 is 34218983.351994437 s in the future tar: ./dev/ptmx: time stamp 2028-01-10 12:45:03 is 34218983.351908767 s in the future tar: ./dev/urandom: time stamp 2028-01-10 12:45:03 is 34218983.351826159 s in the future tar: ./dev/console: time stamp 2028-01-10 12:45:03 is 34218983.351774662 s in the future tar: ./dev/null: time stamp 2028-01-10 12:45:03 is 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tar: ./usr/lib/locale/gl_ES: time stamp 2028-01-10 12:54:41 is 34219554.307324085 s in the future tar: ./usr/lib/locale/ms_MY.utf8/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.307299531 s in the future tar: ./usr/lib/locale/ms_MY.utf8: time stamp 2028-01-10 12:54:41 is 34219554.307277627 s in the future tar: ./usr/lib/locale/mg_MG.utf8: time stamp 2028-01-10 12:54:41 is 34219554.307253336 s in the future tar: ./usr/lib/locale/en_IE@euro/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.307229007 s in the future tar: ./usr/lib/locale/en_IE@euro: time stamp 2028-01-10 12:54:41 is 34219554.307206137 s in the future tar: ./usr/lib/locale/ar_SD/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.307182784 s in the future tar: ./usr/lib/locale/ar_SD: time stamp 2028-01-10 12:54:41 is 34219554.307159858 s in the future tar: ./usr/lib/locale/ar_JO/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.307136436 s in the future tar: ./usr/lib/locale/ar_JO: time stamp 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stamp 2028-01-10 12:54:41 is 34219554.306881848 s in the future tar: ./usr/lib/locale/ru_RU.cp1251: time stamp 2028-01-10 12:54:41 is 34219554.30686012 s in the future tar: ./usr/lib/locale/gl_ES.utf8: time stamp 2028-01-10 12:54:41 is 34219554.30683643 s in the future tar: ./usr/lib/locale/fr_LU@euro/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.306810457 s in the future tar: ./usr/lib/locale/fr_LU@euro: time stamp 2028-01-10 12:54:41 is 34219554.306787873 s in the future tar: ./usr/lib/locale/yi_US.utf8: time stamp 2028-01-10 12:54:41 is 34219554.306765525 s in the future tar: ./usr/lib/locale/ru_RU.utf8: time stamp 2028-01-10 12:54:41 is 34219554.306743124 s in the future tar: ./usr/lib/locale/yuw_PG: time stamp 2028-01-10 12:54:41 is 34219554.306720034 s in the future tar: ./usr/lib/locale/uz_UZ: time stamp 2028-01-10 12:54:41 is 34219554.306696966 s in the future tar: ./usr/lib/locale/nl_AW/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.306673629 s in the future tar: ./usr/lib/locale/nl_AW: time stamp 2028-01-10 12:54:41 is 34219554.306649973 s in the future tar: ./usr/lib/locale/ar_SD.utf8/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.306626303 s in the future tar: ./usr/lib/locale/ar_SD.utf8: time stamp 2028-01-10 12:54:41 is 34219554.30660331 s in the future tar: ./usr/lib/locale/crh_RU: time stamp 2028-01-10 12:54:41 is 34219554.306581208 s in the future tar: ./usr/lib/locale/fr_CA: time stamp 2028-01-10 12:54:41 is 34219554.306556439 s in the future tar: ./usr/lib/locale/kl_GL.utf8: time stamp 2028-01-10 12:54:41 is 34219554.306533636 s in the future tar: ./usr/lib/locale/cs_CZ: time stamp 2028-01-10 12:54:41 is 34219554.306509171 s in the future tar: ./usr/lib/locale/eu_FR/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.306485386 s in the future tar: ./usr/lib/locale/eu_FR: time stamp 2028-01-10 12:54:41 is 34219554.306461976 s in the future tar: ./usr/lib/locale/am_ET: time stamp 2028-01-10 12:54:41 is 34219554.306439574 s in the future tar: ./usr/lib/locale/ru_RU: time stamp 2028-01-10 12:54:41 is 34219554.306415912 s in the future tar: ./usr/lib/locale/en_IE/LC_MESSAGES: time stamp 2028-01-10 12:54:41 is 34219554.306391956 s in the future tar: ./usr/lib/locale/en_IE: time stamp 2028-01-10 12:54:41 is 34219554.306368797 s in the future tar: ./usr/lib/locale/hsb_DE: time stamp 2028-01-10 12:54:41 is 34219554.306346469 s in the future tar: ./usr/lib/locale: time stamp 2028-01-10 12:54:40 is 34219553.306325147 s in the future tar: ./usr/lib/x86_64-linux-gnu: time stamp 2028-01-10 12:54:18 is 34219531.306263036 s in the future tar: ./usr/bin: time stamp 2028-01-10 12:54:43 is 34219556.306144487 s in the future tar: ./usr: time stamp 2028-01-10 12:45:04 is 34218977.306116989 s in the future tar: ./etc/systemd/system: time stamp 2028-01-10 12:45:17 is 34218990.306059624 s in the future tar: ./etc/alternatives: time stamp 2028-01-10 12:54:43 is 34219556.306019924 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cgecore_1.5.6+ds-2.dsc] I: copying [./python-cgecore_1.5.6+ds.orig.tar.xz] I: copying [./python-cgecore_1.5.6+ds-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cgecore_1.5.6+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cgecore in python-cgecore-1.5.6+ds dpkg-source: info: unpacking python-cgecore_1.5.6+ds.orig.tar.xz dpkg-source: info: unpacking python-cgecore_1.5.6+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/739171/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='bd71ca2db550447882a4946206affd7b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='739171' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QAoDm947/pbuilderrc_webH --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QAoDm947/b1 --logfile b1/build.log python-cgecore_1.5.6+ds-2.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/739171/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.8{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxrender1{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-charset-normalizer{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 118 newly installed, 0 to remove and 0 not upgraded. Need to get 60.9 MB of archives. After unpacking 206 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.3.4+ds-3 [138 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.3.4+ds-3 [5093 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 60 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-6 [978 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 4.4.4-2 [1170 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 xml-core all 0.19 [20.1 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.86+dfsg-1 [1612 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 60.9 MB in 3s (20.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../038-libfontenc1_1%3a1.1.8-1+b2_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1+b2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../039-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../040-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../041-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../042-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../043-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../044-xfonts-utils_1%3a7.7+7_amd64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../045-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../046-fontconfig-config_2.15.0-2.4_amd64.deb ... Unpacking fontconfig-config (2.15.0-2.4) ... Selecting previously unselected package libabsl20240722:amd64. Preparing to unpack .../047-libabsl20240722_20240722.0-4_amd64.deb ... Unpacking libabsl20240722:amd64 (20240722.0-4) ... Selecting previously unselected package libaom3:amd64. Preparing to unpack .../048-libaom3_3.13.1-2_amd64.deb ... Unpacking libaom3:amd64 (3.13.1-2) ... Selecting previously unselected package libdav1d7:amd64. 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Setting up librav1e0.8:amd64 (0.8.1-6) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 10 23:29:13 UTC 2026. Universal Time is now: Thu Dec 10 23:29:13 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... 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Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libavif16:amd64 (1.3.0-1+b1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.86.1-1) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.3.4+ds-3) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-rlpycairo (0.3.0-4) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.4.4-2) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.86+dfsg-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-2_source.changes dpkg-buildpackage: info: source package python-cgecore dpkg-buildpackage: info: source version 1.5.6+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf cgecore.egg-info make[1]: Leaving directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore copying cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore copying cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore copying cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster copying cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-cgecore/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__pycache__ creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/utility.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/cmdline.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/__pycache__/argumentparsing.cpython-313.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.13_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/cgefinder.py to cgefinder.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/utility.py to utility.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/organisminfo/species.py to species.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/cmdline.py to cmdline.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-313.pyc running install_egg_info running egg_info creating cgecore.egg-info writing cgecore.egg-info/PKG-INFO writing dependency_links to cgecore.egg-info/dependency_links.txt writing top-level names to cgecore.egg-info/top_level.txt writing manifest file 'cgecore.egg-info/SOURCES.txt' reading manifest file 'cgecore.egg-info/SOURCES.txt' writing manifest file 'cgecore.egg-info/SOURCES.txt' Copying cgecore.egg-info to /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.13/dist-packages/cgecore-1.5.6.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cgecore' in '../python3-cgecore_1.5.6+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cgecore_1.5.6+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cgecore_1.5.6+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/739171 and its subdirectories I: Current time: Thu Dec 10 11:30:06 -12 2026 I: pbuilder-time-stamp: 1796945406 Fri Nov 7 17:07:07 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Fri Nov 7 17:07:07 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Fri Nov 7 17:12:05 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Fri Nov 7 17:12:05 UTC 2025 I: python-cgecore_1.5.6+ds-2_amd64.changes: Format: 1.8 Date: Tue, 19 Nov 2024 21:23:35 +0100 Source: python-cgecore Binary: python3-cgecore Architecture: all Version: 1.5.6+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-cgecore - Python3 module for the Center for Genomic Epidemiology Closes: 1084632 1085895 Changes: python-cgecore (1.5.6+ds-2) unstable; urgency=medium . * Team upload. * Patch out regexp that causes SyntaxWarning's (Closes: #1085895) * Patch out usage of "pipes" module removed from Py3.13 (Closes: #1084632) * Use dh-sequence-python3 Checksums-Sha1: 662be1147c72b6e5c6cdbf19f33b2455ecb1e69d 7222 python-cgecore_1.5.6+ds-2_amd64.buildinfo f79dd97e395718a6daa2232cc1b86f4b9b2e4b49 28792 python3-cgecore_1.5.6+ds-2_all.deb Checksums-Sha256: 4ff0258bae001814184ffaa988040b9067a31bb4055302ea3d6ee007f0cd3800 7222 python-cgecore_1.5.6+ds-2_amd64.buildinfo eaa1450e61fe0cec099142bb72d6b79ba149954df8520568bd7cc67dd70cd880 28792 python3-cgecore_1.5.6+ds-2_all.deb Files: bdea1086b4bbf79a9c35f0089a713948 7222 python optional python-cgecore_1.5.6+ds-2_amd64.buildinfo f7d91f5bdd354accd3829d58ff16bb64 28792 python optional python3-cgecore_1.5.6+ds-2_all.deb Fri Nov 7 17:12:06 UTC 2025 I: diffoscope 307 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_6-63117.service; invocation ID: 026d2ad960ab41faa64dc7780ec5e1f4 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QAoDm947/python-cgecore_1.5.6+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QAoDm947/python-cgecore_1.5.6+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QAoDm947/python-cgecore_1.5.6+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QAoDm947/b1/python-cgecore_1.5.6+ds-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QAoDm947/b2/python-cgecore_1.5.6+ds-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 202ms CPU time consumed: 170ms Memory peak: 17.6M (swap: 0B) Fri Nov 7 17:12:06 UTC 2025 I: diffoscope 307 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 7 17:12:06 UTC 2025 I: python-cgecore from forky built successfully and reproducibly on amd64. Fri Nov 7 17:12:07 UTC 2025 I: Removing signed python-cgecore_1.5.6+ds-2_amd64.buildinfo.asc files: removed './b1/python-cgecore_1.5.6+ds-2_amd64.buildinfo.asc' removed './b2/python-cgecore_1.5.6+ds-2_amd64.buildinfo.asc'