Thu Nov 27 18:26:01 UTC 2025 I: starting to build mrtrix3/forky/amd64 on jenkins on '2025-11-27 18:25' Thu Nov 27 18:26:01 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/94886/console.log Thu Nov 27 18:26:01 UTC 2025 I: Downloading source for forky/mrtrix3=3.0.4-1 --2025-11-27 18:26:01-- http://deb.debian.org/debian/pool/main/m/mrtrix3/mrtrix3_3.0.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2364 (2.3K) [text/prs.lines.tag] Saving to: ‘mrtrix3_3.0.4-1.dsc’ 0K .. 100% 266M=0s 2025-11-27 18:26:01 (266 MB/s) - ‘mrtrix3_3.0.4-1.dsc’ saved [2364/2364] Thu Nov 27 18:26:01 UTC 2025 I: mrtrix3_3.0.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mrtrix3 Binary: mrtrix3, mrtrix3-doc Architecture: any-amd64 arm64 all Version: 3.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Michael Hanke , Yaroslav Halchenko , Étienne Mollier Homepage: https://www.mrtrix.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mrtrix3 Vcs-Git: https://salsa.debian.org/med-team/mrtrix3.git Build-Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkg-config, imagemagick, libtiff-dev, matlab-support-dev, bc Package-List: mrtrix3 deb science optional arch=any-amd64,arm64 mrtrix3-doc deb doc optional arch=all Checksums-Sha1: e19c1c6e36e808dcbee2d3299b2c2313c860ee38 2551340 mrtrix3_3.0.4.orig.tar.gz 3167b9fd7957b9caef294b1215971e299f6f3b7f 9652 mrtrix3_3.0.4-1.debian.tar.xz Checksums-Sha256: f1d1aa289cfc3e46e3a8eca93594b23d061c6d50a0cd03727433a7e2cd14f71a 2551340 mrtrix3_3.0.4.orig.tar.gz fae513ffec0fe598cde595c869b88afc2dc6cb1bc19999f5ed3bd6b03519d412 9652 mrtrix3_3.0.4-1.debian.tar.xz Files: 7ef7e572afc3008f283cf534530f6d97 2551340 mrtrix3_3.0.4.orig.tar.gz a98a9097b966bdd08417e291d0beaacd 9652 mrtrix3_3.0.4-1.debian.tar.xz Dgit: 1ca687099353fd3aa64c2680aa6c8bdfed083a20 debian archive/debian/3.0.4-1 https://git.dgit.debian.org/mrtrix3 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTWTcgUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpyBhAAn9AASsUacO+mkMdrfZsYwDnMj+oT +0b1XMYJg5TCIkeOLJ5EY5CIYLn0kFOTPV+UyBcdMDAuoBxTod1cA872iv9n6GJq vQDe1taiRgeOd+QrucWEe2WCX9xnco/rAHrQlC1H+K+WE/UlAoaFAg3u6tzOuUA2 yhyv3gD+BQNZqCvsFuL5j1pNWFS29Wg7rr7+0RAsW6IsgRaAzlDdmzF0NFa7MIdb /8GSMur6X8l0dwzrVGmA/EyWBetSgj9iiiXE1gmJc6yCZqBZhzxNlz/gIou4WWbT sqG4Joy8zNvn9mroB4T5NQK6x3PBKE8YPT2jjsv3SJiO1Uhcd11NEMJYnhTharnU Rm4dFDTr99jsB52vngsxHMSOwAcqVq4iMLgoL+bX4fAVBmxnKl/DWKYepwCk5ewP 9exWZKOdgiDsGzBwj7Uk3xRINOyQf7MwWToa5JHP0HK+zN13HW1CAPQQALIkvUYA XqjQlNbNCQVcX1ZO7yIyoGMbTRXKsVZuMUE9gtjO3qEpaVwxc13Iqn0kAQWDtVfc z9V1ldMa+37e5tF1STDC2LqQUU8YjqO1+ftrcD6w2AY4pazMgKuPMhdMgcGrkWvT UoOH8XJIot//fDP97yneiYd6LDkl78FRbGe+VVTTyC/RZy+y3Gwx1E/eC+lTCxFp ZTKpw2IIeBzFYiQ= =msa5 -----END PGP SIGNATURE----- Thu Nov 27 18:26:01 UTC 2025 I: Checking whether the package is not for us Thu Nov 27 18:26:01 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Thu Nov 27 18:26:01 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Thu Nov 27 18:41:50 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 27 06:26:03 -12 2025 I: pbuilder-time-stamp: 1764267963 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mrtrix3_3.0.4-1.dsc] I: copying [./mrtrix3_3.0.4.orig.tar.gz] I: copying [./mrtrix3_3.0.4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mrtrix3_3.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting mrtrix3 in mrtrix3-3.0.4 dpkg-source: info: unpacking mrtrix3_3.0.4.orig.tar.gz dpkg-source: info: unpacking mrtrix3_3.0.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_build_cfg dpkg-source: info: applying python3.patch dpkg-source: info: applying mrtrix_version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2618479/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='27562513f9504b87adb459456c69320f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2618479' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Vp1P3yo9/pbuilderrc_E9Aj --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Vp1P3yo9/b1 --logfile b1/build.log mrtrix3_3.0.4-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.57+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.57-1 (2025-11-05) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2618479/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, octave-dev, libgsl-dev, libeigen3-dev, libqt5opengl5-dev, qtbase5-dev, libqt5svg5-dev, python3, pkg-config, imagemagick, libtiff-dev, matlab-support-dev, bc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on octave-dev; however: Package octave-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5svg5-dev; however: Package libqt5svg5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on matlab-support-dev; however: Package matlab-support-dev is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} hdf5-helpers{a} hicolor-icon-theme{a} imagemagick{a} imagemagick-7-common{a} imagemagick-7.q16{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libamd3{a} libarchive-zip-perl{a} libarpack2t64{a} libasound2-data{a} libasound2t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb2-1{a} libblas-dev{a} libblas3{a} libbrotli-dev{a} libbrotli1{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libduktape207{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libflac14{a} libfltk-gl1.3t64{a} libfltk1.3t64{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgfortran-15-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglib2.0-0t64{a} libglpk40{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphicsmagick++-q16-12t64{a} libgraphicsmagick-q16-3t64{a} libgraphite2-3{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhwy1t64{a} libice6{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libinput-bin{a} libinput10{a} libintl-perl{a} libjack-jackd2-0{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjxl0.11{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-dev{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm19{a} liblqr-1-0{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-7.q16-10{a} libmagickwand-7.q16-10{a} libmd4c0{a} libmp3lame0{a} libmpg123-0t64{a} libmtdev1t64{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl-dev{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libogg0{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopus0{a} libp11-kit-dev{a} libp11-kit0{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpng16-16t64{a} libportaudio2{a} libproc2-0{a} libproxy1v5{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqrupdate1{a} libqscintilla2-qt6-15{a} libqscintilla2-qt6-l10n{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5svg5{a} libqt5svg5-dev{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libqt6core5compat6{a} libqt6core6t64{a} libqt6dbus6{a} libqt6gui6{a} libqt6help6{a} libqt6network6{a} libqt6opengl6{a} libqt6openglwidgets6{a} libqt6printsupport6{a} libqt6sql6{a} libqt6widgets6{a} libqt6xml6{a} libraw23t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsamplerate0{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libsndfile1{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparseconfig7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtext-charwidth-perl{a} libtext-unidecode-perl{a} libtext-wrapi18n-perl{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libts0t64{a} libuchardet0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libvorbis0a{a} libvorbisenc2{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwmflite-0.2-7{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-cursor0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcursor1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxft2{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2-16{a} libxrender1{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} matlab-support-dev{a} media-types{a} mesa-libgallium{a} netbase{a} nettle-dev{a} octave{a} octave-common{a} octave-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tex-common{a} texinfo{a} texinfo-lib{a} tzdata{a} ucf{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ca-certificates curl dbus default-jre-headless epstool fonts-freefont-otf fonts-urw-base35 ghostscript gnuplot-nox gnuplot-qt gnuplot-x11 krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libintl-xs-perl libldap-common libltdl-dev libmagickcore-7.q16-10-extra libmail-sendmail-perl libopenblas0 libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt6sql6-ibase libqt6sql6-mysql libqt6sql6-odbc libqt6sql6-psql libqt6sql6-sqlite libsasl2-modules libtasn1-doc libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx mesa-vulkan-drivers netpbm octave-doc psmisc pstoedit publicsuffix qt5-gtk-platformtheme qt6-gtk-platformtheme qt6-qpa-plugins qt6-svg-plugins qt6-translations-l10n qt6-wayland qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 364 newly installed, 0 to remove and 0 not upgraded. Need to get 214 MB of archives. After unpacking 873 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.51-1 [287 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.2-1 [564 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.20.2-2+b1 [19.1 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.20.2-2+b1 [17.7 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.20.2-2+b1 [601 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.17-1 [163 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.2-1 [1547 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b2 [29.5 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.5.4-7 [416 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libraw23t64 amd64 0.21.4-2 [390 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.1+dfsg-1 [641 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 imagemagick-7-common all 8:7.1.2.8+dfsg1-1 [69.3 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.2.8+dfsg1-1 [1848 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.2.8+dfsg1-1 [342 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 66 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 67 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-3 [878 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.2-1 [772 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 bc amd64 1.07.1-4 [103 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 82 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 libgfortran-15-dev amd64 15.2.0-7 [886 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-7 [12.7 MB] Get: 94 http://deb.debian.org/debian forky/main amd64 gfortran-15 amd64 15.2.0-7 [18.0 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 96 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 97 http://deb.debian.org/debian forky/main amd64 hdf5-helpers amd64 1.14.5+repack-4 [26.7 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 imagemagick-7.q16 amd64 8:7.1.2.8+dfsg1-1 [728 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 imagemagick amd64 8:7.1.2.8+dfsg1-1 [21.8 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 104 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.22.1-2 [60.3 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.22.1-2 [42.5 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.22.1-2 [43.4 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.22.1-2 [56.2 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.22.1-2 [127 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 113 http://deb.debian.org/debian forky/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libsuitesparseconfig7 amd64 1:7.11.0+dfsg-2 [33.4 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libamd3 amd64 1:7.11.0+dfsg-2 [51.0 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libarpack2t64 amd64 3.9.1-6 [104 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 libasound2-data all 1.2.14-2 [21.1 kB] Get: 120 http://deb.debian.org/debian forky/main amd64 libasound2t64 amd64 1.2.14-2 [420 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 libavahi-common-data amd64 0.8-17 [112 kB] Get: 122 http://deb.debian.org/debian forky/main amd64 libavahi-common3 amd64 0.8-17 [47.3 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get: 124 http://deb.debian.org/debian forky/main amd64 libavahi-client3 amd64 0.8-17 [52.1 kB] Get: 125 http://deb.debian.org/debian forky/main amd64 libb2-1 amd64 0.98.1-1.1+b2 [41.7 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libcamd3 amd64 1:7.11.0+dfsg-2 [47.8 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libccolamd3 amd64 1:7.11.0+dfsg-2 [49.7 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libcolamd3 amd64 1:7.11.0+dfsg-2 [42.4 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libcholmod5 amd64 1:7.11.0+dfsg-2 [703 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.10-1 [444 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 libcups2t64 amd64 2.4.14-1 [255 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 142 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.17.0-3 [401 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0-3 [409 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 151 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.22.1-2 [16.1 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl-dev amd64 1.16.0-1 [28.4 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.24.1-2 [614 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.10-3 [458 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libgnutls-openssl27t64 amd64 3.8.10-3 [458 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.25.10-1 [221 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.10-3 [1431 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.5.4-1 [2980 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 175 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 176 http://deb.debian.org/debian forky/main amd64 libcurl4-openssl-dev amd64 8.17.0-3 [531 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 libcxsparse4 amd64 1:7.11.0+dfsg-2 [101 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 179 http://deb.debian.org/debian forky/main amd64 libdouble-conversion3 amd64 3.3.1-2 [41.5 kB] Get: 180 http://deb.debian.org/debian forky/main amd64 libdrm-common all 2.4.127-1 [9060 B] Get: 181 http://deb.debian.org/debian forky/main amd64 libdrm2 amd64 2.4.127-1 [39.8 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 libdrm-amdgpu1 amd64 2.4.127-1 [23.8 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 libdrm-intel1 amd64 2.4.127-1 [65.6 kB] Get: 185 http://deb.debian.org/debian forky/main amd64 libduktape207 amd64 2.7.0-2+b2 [135 kB] Get: 186 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 187 http://deb.debian.org/debian forky/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-10.1 [26.0 MB] Get: 190 http://deb.debian.org/debian forky/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 libsensors5 amd64 1:3.6.2-2 [37.5 kB] Get: 192 http://deb.debian.org/debian forky/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB] Get: 193 http://deb.debian.org/debian forky/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get: 194 http://deb.debian.org/debian forky/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get: 198 http://deb.debian.org/debian forky/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 mesa-libgallium amd64 25.2.6-1 [10.3 MB] Get: 200 http://deb.debian.org/debian forky/main amd64 libgbm1 amd64 25.2.6-1 [46.0 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 libwayland-client0 amd64 1.24.0-2+b1 [28.5 kB] Get: 202 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 203 http://deb.debian.org/debian forky/main amd64 libegl-mesa0 amd64 25.2.6-1 [123 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get: 205 http://deb.debian.org/debian forky/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get: 206 http://deb.debian.org/debian forky/main amd64 libxxf86vm1 amd64 1:1.1.4-2 [19.9 kB] Get: 207 http://deb.debian.org/debian forky/main amd64 libvulkan1 amd64 1.4.328.1-1 [140 kB] Get: 208 http://deb.debian.org/debian forky/main amd64 libgl1-mesa-dri amd64 25.2.6-1 [47.8 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 libglx-mesa0 amd64 25.2.6-1 [116 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get: 211 http://deb.debian.org/debian forky/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 213 http://deb.debian.org/debian forky/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 214 http://deb.debian.org/debian forky/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 216 http://deb.debian.org/debian forky/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB] Get: 217 http://deb.debian.org/debian forky/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 218 http://deb.debian.org/debian forky/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 219 http://deb.debian.org/debian forky/main amd64 libglx-dev amd64 1.7.0-1+b2 [15.8 kB] Get: 220 http://deb.debian.org/debian forky/main amd64 libgl-dev amd64 1.7.0-1+b2 [101 kB] Get: 221 http://deb.debian.org/debian forky/main amd64 libegl-dev amd64 1.7.0-1+b2 [19.5 kB] Get: 222 http://deb.debian.org/debian forky/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 223 http://deb.debian.org/debian forky/main amd64 libevdev2 amd64 1.13.5+dfsg-1 [32.6 kB] Get: 224 http://deb.debian.org/debian forky/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 225 http://deb.debian.org/debian forky/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 226 http://deb.debian.org/debian forky/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 227 http://deb.debian.org/debian forky/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 228 http://deb.debian.org/debian forky/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 229 http://deb.debian.org/debian forky/main amd64 libogg0 amd64 1.3.6-2 [24.3 kB] Get: 230 http://deb.debian.org/debian forky/main amd64 libflac14 amd64 1.5.0+ds-5 [180 kB] Get: 231 http://deb.debian.org/debian forky/main amd64 libxfixes3 amd64 1:6.0.0-2+b4 [20.2 kB] Get: 232 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 233 http://deb.debian.org/debian forky/main amd64 libxcursor1 amd64 1:1.2.3-1 [39.7 kB] Get: 234 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 235 http://deb.debian.org/debian forky/main amd64 libxinerama1 amd64 2:1.1.4-3+b4 [16.0 kB] Get: 236 http://deb.debian.org/debian forky/main amd64 libfltk1.3t64 amd64 1.3.11-3 [563 kB] Get: 237 http://deb.debian.org/debian forky/main amd64 libfltk-gl1.3t64 amd64 1.3.11-3 [65.3 kB] Get: 238 http://deb.debian.org/debian forky/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-4 [43.2 kB] Get: 239 http://deb.debian.org/debian forky/main amd64 libglpk40 amd64 5.0-2 [398 kB] Get: 240 http://deb.debian.org/debian forky/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get: 241 http://deb.debian.org/debian forky/main amd64 libglu1-mesa amd64 9.0.2-1.1+b3 [184 kB] Get: 242 http://deb.debian.org/debian forky/main amd64 libopengl-dev amd64 1.7.0-1+b2 [5388 B] Get: 243 http://deb.debian.org/debian forky/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b3 [223 kB] Get: 244 http://deb.debian.org/debian forky/main amd64 libhwy1t64 amd64 1.2.0-5 [685 kB] Get: 245 http://deb.debian.org/debian forky/main amd64 libjxl0.11 amd64 0.11.1-6 [1165 kB] Get: 246 http://deb.debian.org/debian forky/main amd64 libwmflite-0.2-7 amd64 0.2.13-2 [75.3 kB] Get: 247 http://deb.debian.org/debian forky/main amd64 libgraphicsmagick-q16-3t64 amd64 1.4+really1.3.45+hg17696-1+b1 [1221 kB] Get: 248 http://deb.debian.org/debian forky/main amd64 libgraphicsmagick++-q16-12t64 amd64 1.4+really1.3.45+hg17696-1+b1 [119 kB] Get: 249 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 250 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 251 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 252 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Get: 253 http://deb.debian.org/debian forky/main amd64 libgudev-1.0-0 amd64 238-7 [14.6 kB] Get: 254 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 255 http://deb.debian.org/debian forky/main amd64 libhdf5-310 amd64 1.14.5+repack-4 [1448 kB] Get: 256 http://deb.debian.org/debian forky/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-4 [146 kB] Get: 257 http://deb.debian.org/debian forky/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-4 [122 kB] Get: 258 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [72.6 kB] Get: 259 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-4 [47.9 kB] Get: 260 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Get: 261 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 262 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 263 http://deb.debian.org/debian forky/main amd64 libhdf5-dev amd64 1.14.5+repack-4 [3327 kB] Get: 264 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 265 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 266 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 267 http://deb.debian.org/debian forky/main amd64 libwacom-common all 2.16.1-1 [112 kB] Get: 268 http://deb.debian.org/debian forky/main amd64 libwacom9 amd64 2.16.1-1 [26.8 kB] Get: 269 http://deb.debian.org/debian forky/main amd64 libinput-bin amd64 1.28.1-1 [26.3 kB] Get: 270 http://deb.debian.org/debian forky/main amd64 libmtdev1t64 amd64 1.1.7-1 [22.6 kB] Get: 271 http://deb.debian.org/debian forky/main amd64 libinput10 amd64 1.28.1-1 [143 kB] Get: 272 http://deb.debian.org/debian forky/main amd64 libintl-perl all 1.35-1 [690 kB] Get: 273 http://deb.debian.org/debian forky/main amd64 libopus0 amd64 1.5.2-2 [2852 kB] Get: 274 http://deb.debian.org/debian forky/main amd64 libsamplerate0 amd64 0.2.2-4+b2 [950 kB] Get: 275 http://deb.debian.org/debian forky/main amd64 libjack-jackd2-0 amd64 1.9.22~dfsg-5 [288 kB] Get: 276 http://deb.debian.org/debian forky/main amd64 libjbig-dev amd64 2.1-6.1+b2 [31.4 kB] Get: 277 http://deb.debian.org/debian forky/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 278 http://deb.debian.org/debian forky/main amd64 liblerc-dev amd64 4.0.0+ds-5 [183 kB] Get: 279 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 280 http://deb.debian.org/debian forky/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get: 281 http://deb.debian.org/debian forky/main amd64 libmp3lame0 amd64 3.100-6+b3 [363 kB] Get: 282 http://deb.debian.org/debian forky/main amd64 libmpg123-0t64 amd64 1.33.3-1 [155 kB] Get: 283 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 284 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get: 285 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB] Get: 286 http://deb.debian.org/debian forky/main amd64 libportaudio2 amd64 19.7.0-1 [64.8 kB] Get: 287 http://deb.debian.org/debian forky/main amd64 libproxy1v5 amd64 0.5.11-2 [28.4 kB] Get: 288 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get: 289 http://deb.debian.org/debian forky/main amd64 libqrupdate1 amd64 1.1.5-2 [40.0 kB] Get: 290 http://deb.debian.org/debian forky/main amd64 libqscintilla2-qt6-l10n all 2.14.1+dfsg-2 [105 kB] Get: 291 http://deb.debian.org/debian forky/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get: 292 http://deb.debian.org/debian forky/main amd64 libqt6core6t64 amd64 6.9.2+dfsg-3 [1897 kB] Get: 293 http://deb.debian.org/debian forky/main amd64 libqt6dbus6 amd64 6.9.2+dfsg-3 [269 kB] Get: 294 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 295 http://deb.debian.org/debian forky/main amd64 libts0t64 amd64 1.22-1.1+b1 [61.7 kB] Get: 296 http://deb.debian.org/debian forky/main amd64 libxcb-util1 amd64 0.4.1-1 [23.5 kB] Get: 297 http://deb.debian.org/debian forky/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get: 298 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 299 http://deb.debian.org/debian forky/main amd64 libxcb-render-util0 amd64 0.3.10-1 [18.4 kB] Get: 300 http://deb.debian.org/debian forky/main amd64 libxcb-cursor0 amd64 0.1.5-1 [17.1 kB] Get: 301 http://deb.debian.org/debian forky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get: 302 http://deb.debian.org/debian forky/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [16.7 kB] Get: 303 http://deb.debian.org/debian forky/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get: 304 http://deb.debian.org/debian forky/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get: 305 http://deb.debian.org/debian forky/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get: 306 http://deb.debian.org/debian forky/main amd64 xkb-data all 2.42-1 [790 kB] Get: 307 http://deb.debian.org/debian forky/main amd64 libxkbcommon0 amd64 1.12.3-1 [146 kB] Get: 308 http://deb.debian.org/debian forky/main amd64 libxkbcommon-x11-0 amd64 1.12.3-1 [17.0 kB] Get: 309 http://deb.debian.org/debian forky/main amd64 libqt6gui6 amd64 6.9.2+dfsg-3 [3262 kB] Get: 310 http://deb.debian.org/debian forky/main amd64 libqt6widgets6 amd64 6.9.2+dfsg-3 [2681 kB] Get: 311 http://deb.debian.org/debian forky/main amd64 libqt6printsupport6 amd64 6.9.2+dfsg-3 [221 kB] Get: 312 http://deb.debian.org/debian forky/main amd64 libqscintilla2-qt6-15 amd64 2.14.1+dfsg-2 [1185 kB] Get: 313 http://deb.debian.org/debian forky/main amd64 libqt5core5t64 amd64 5.15.17+dfsg-4 [1898 kB] Get: 314 http://deb.debian.org/debian forky/main amd64 libqt5concurrent5t64 amd64 5.15.17+dfsg-4 [45.3 kB] Get: 315 http://deb.debian.org/debian forky/main amd64 libqt5dbus5t64 amd64 5.15.17+dfsg-4 [219 kB] Get: 316 http://deb.debian.org/debian forky/main amd64 libqt5network5t64 amd64 5.15.17+dfsg-4 [692 kB] Get: 317 http://deb.debian.org/debian forky/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get: 318 http://deb.debian.org/debian forky/main amd64 libqt5gui5t64 amd64 5.15.17+dfsg-4 [3534 kB] Get: 319 http://deb.debian.org/debian forky/main amd64 libqt5widgets5t64 amd64 5.15.17+dfsg-4 [2424 kB] Get: 320 http://deb.debian.org/debian forky/main amd64 libqt5opengl5t64 amd64 5.15.17+dfsg-4 [152 kB] Get: 321 http://deb.debian.org/debian forky/main amd64 libqt5printsupport5t64 amd64 5.15.17+dfsg-4 [208 kB] Get: 322 http://deb.debian.org/debian forky/main amd64 libqt5sql5t64 amd64 5.15.17+dfsg-4 [126 kB] Get: 323 http://deb.debian.org/debian forky/main amd64 libqt5test5t64 amd64 5.15.17+dfsg-4 [153 kB] Get: 324 http://deb.debian.org/debian forky/main amd64 libqt5xml5t64 amd64 5.15.17+dfsg-4 [127 kB] Get: 325 http://deb.debian.org/debian forky/main amd64 libvulkan-dev amd64 1.4.328.1-1 [1679 kB] Get: 326 http://deb.debian.org/debian forky/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB] Get: 327 http://deb.debian.org/debian forky/main amd64 qt5-qmake-bin amd64 5.15.17+dfsg-4 [1074 kB] Get: 328 http://deb.debian.org/debian forky/main amd64 qtchooser amd64 66-2 [26.3 kB] Get: 329 http://deb.debian.org/debian forky/main amd64 qt5-qmake amd64 5.15.17+dfsg-4 [225 kB] Get: 330 http://deb.debian.org/debian forky/main amd64 qtbase5-dev-tools amd64 5.15.17+dfsg-4 [777 kB] Get: 331 http://deb.debian.org/debian forky/main amd64 qtbase5-dev amd64 5.15.17+dfsg-4 [1124 kB] Get: 332 http://deb.debian.org/debian forky/main amd64 libqt5opengl5-dev amd64 5.15.17+dfsg-4 [52.4 kB] Get: 333 http://deb.debian.org/debian forky/main amd64 libqt5svg5 amd64 5.15.17-2 [138 kB] Get: 334 http://deb.debian.org/debian forky/main amd64 libqt5svg5-dev amd64 5.15.17-2 [13.2 kB] Get: 335 http://deb.debian.org/debian forky/main amd64 libqt6core5compat6 amd64 6.9.2-3 [139 kB] Get: 336 http://deb.debian.org/debian forky/main amd64 libqt6sql6 amd64 6.9.2+dfsg-3 [147 kB] Get: 337 http://deb.debian.org/debian forky/main amd64 libqt6help6 amd64 6.9.2-3 [187 kB] Get: 338 http://deb.debian.org/debian forky/main amd64 libqt6network6 amd64 6.9.2+dfsg-3 [802 kB] Get: 339 http://deb.debian.org/debian forky/main amd64 libqt6opengl6 amd64 6.9.2+dfsg-3 [413 kB] Get: 340 http://deb.debian.org/debian forky/main amd64 libqt6openglwidgets6 amd64 6.9.2+dfsg-3 [50.5 kB] Get: 341 http://deb.debian.org/debian forky/main amd64 libqt6xml6 amd64 6.9.2+dfsg-3 [87.0 kB] Get: 342 http://deb.debian.org/debian forky/main amd64 libreadline-dev amd64 8.3-3 [175 kB] Get: 343 http://deb.debian.org/debian forky/main amd64 libsharpyuv-dev amd64 1.5.0-0.1 [120 kB] Get: 344 http://deb.debian.org/debian forky/main amd64 libvorbis0a amd64 1.3.7-3 [90.0 kB] Get: 345 http://deb.debian.org/debian forky/main amd64 libvorbisenc2 amd64 1.3.7-3 [75.4 kB] Get: 346 http://deb.debian.org/debian forky/main amd64 libsndfile1 amd64 1.2.2-3 [222 kB] Get: 347 http://deb.debian.org/debian forky/main amd64 libspqr4 amd64 1:7.11.0+dfsg-2 [164 kB] Get: 348 http://deb.debian.org/debian forky/main amd64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 349 http://deb.debian.org/debian forky/main amd64 libwebpdecoder3 amd64 1.5.0-0.1 [208 kB] Get: 350 http://deb.debian.org/debian forky/main amd64 libwebp-dev amd64 1.5.0-0.1 [450 kB] Get: 351 http://deb.debian.org/debian forky/main amd64 libtiffxx6 amd64 4.7.1-1 [174 kB] Get: 352 http://deb.debian.org/debian forky/main amd64 libtiff-dev amd64 4.7.1-1 [504 kB] Get: 353 http://deb.debian.org/debian forky/main amd64 libumfpack6 amd64 1:7.11.0+dfsg-2 [309 kB] Get: 354 http://deb.debian.org/debian forky/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 355 http://deb.debian.org/debian forky/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 356 http://deb.debian.org/debian forky/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 357 http://deb.debian.org/debian forky/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-6+b1 [314 kB] Get: 358 http://deb.debian.org/debian forky/main amd64 matlab-support-dev all 0.3 [5444 B] Get: 359 http://deb.debian.org/debian forky/main amd64 texinfo-lib amd64 7.2-5 [812 kB] Get: 360 http://deb.debian.org/debian forky/main amd64 tex-common all 6.19 [29.4 kB] Get: 361 http://deb.debian.org/debian forky/main amd64 texinfo all 7.2-5 [1973 kB] Get: 362 http://deb.debian.org/debian forky/main amd64 octave-common all 10.3.0-2 [6652 kB] Get: 363 http://deb.debian.org/debian forky/main amd64 octave amd64 10.3.0-2 [10.1 MB] Get: 364 http://deb.debian.org/debian forky/main amd64 octave-dev amd64 10.3.0-2 [1072 kB] Fetched 214 MB in 3s (82.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../01-libfftw3-double3_3.3.10-2+b1_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.10-2+b1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../6-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../7-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libvulkan1:amd64 (1.4.328.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libnghttp3-dev:amd64 (1.12.0-1) ... Setting up liblzma-dev:amd64 (5.8.1-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up libdav1d7:amd64 (1.5.2-1) ... Setting up libmtdev1t64:amd64 (1.1.7-1) ... Setting up sensible-utils (0.0.26) ... Setting up libduktape207:amd64 (2.7.0-2+b2) ... Setting up libxshmfence1:amd64 (1.3.3-1) ... Setting up libtiff6:amd64 (4.7.1-1) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libintl-perl (1.35-1) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libmd4c0:amd64 (0.5.2-2+b1) ... Setting up libsuitesparseconfig7:amd64 (1:7.11.0+dfsg-2) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b3) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libopengl-dev:amd64 (1.7.0-1+b2) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libgsl28:amd64 (2.8+dfsg-5.1) ... Setting up libde265-0:amd64 (1.0.16-1) ... Setting up libsharpyuv-dev:amd64 (1.5.0-0.1) ... Setting up libsamplerate0:amd64 (0.2.2-4+b2) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libtiffxx6:amd64 (4.7.1-1) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up libdrm-common (2.4.127-1) ... Setting up libjxl0.11:amd64 (0.11.1-6) ... Setting up libevdev2:amd64 (1.13.5+dfsg-1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up qtchooser (66-2) ... Setting up libmp3lame0:amd64 (3.100-6+b3) ... Setting up libblas-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.4-2) ... Setting up libvorbisenc2:amd64 (1.3.7-3) ... Setting up libwacom-common (2.16.1-1) ... Setting up libxkbcommon0:amd64 (1.12.3-1) ... Setting up matlab-support-dev (0.3) ... Setting up libwayland-client0:amd64 (1.24.0-2+b1) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.7-10.1) ... Setting up libx11-xcb1:amd64 (2:1.8.12-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up gettext (0.23.2-1) ... Setting up libgsl-dev (2.8+dfsg-5.1) ... Setting up libarpack2t64:amd64 (3.9.1-6) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up libamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up qt5-qmake:amd64 (5.15.17+dfsg-4) ... Setting up nettle-dev:amd64 (3.10.2-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up libcolamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libaec-dev:amd64 (1.1.4-2) ... Setting up libavahi-common3:amd64 (0.8-17) ... Setting up libcxsparse4:amd64 (1:7.11.0+dfsg-2) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up libjbig-dev:amd64 (2.1-6.1+b2) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libngtcp2-dev:amd64 (1.16.0-1) ... Setting up libqrupdate1:amd64 (1.1.5-2) ... Setting up libgfortran-15-dev:amd64 (15.2.0-7) ... Setting up libcamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up libxxf86vm1:amd64 (1:1.1.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libglib2.0-0t64:amd64 (2.86.2-1) ... No schema files found: doing nothing. Setting up libwebp-dev:amd64 (1.5.0-0.1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libtiff-dev:amd64 (4.7.1-1) ... Setting up libglpk40:amd64 (5.0-2) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b4) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.25.10-1) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b4) ... Setting up libxkbcommon-x11-0:amd64 (1.12.3-1) ... Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up ucf (3.0052) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libccolamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libngtcp2-crypto-ossl-dev:amd64 (1.16.0-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libjack-jackd2-0:amd64 (1.9.22~dfsg-5) ... Setting up libdrm2:amd64 (2.4.127-1) ... Setting up liblqr-1-0:amd64 (0.4.2-2.1+b2) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsndfile1:amd64 (1.2.2-3) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libavahi-client3:amd64 (0.8-17) ... Setting up libgudev-1.0-0:amd64 (238-7) ... Setting up libp11-kit-dev:amd64 (0.25.10-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.127-1) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up libgnutls-openssl27t64:amd64 (3.8.10-3) ... Setting up gfortran-15-x86-64-linux-gnu (15.2.0-7) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up libportaudio2:amd64 (19.7.0-1) ... Setting up libqt6core6t64:amd64 (6.9.2+dfsg-3) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libcholmod5:amd64 (1:7.11.0+dfsg-2) ... Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libspqr4:amd64 (1:7.11.0+dfsg-2) ... Setting up python3.13 (3.13.9-1) ... Setting up libwacom9:amd64 (2.16.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:amd64 (1:1.2.3-1) ... Setting up libdrm-intel1:amd64 (2.4.127-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up bc (1.07.1-4) ... Setting up python3 (3.13.7-1) ... Setting up libreadline-dev:amd64 (8.3-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libinput-bin (1.28.1-1) ... Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libqt5core5t64:amd64 (5.15.17+dfsg-4) ... Setting up libgnutls-dane0t64:amd64 (3.8.10-3) ... Setting up libqt6xml6:amd64 (6.9.2+dfsg-3) ... Setting up libqt6sql6:amd64 (6.9.2+dfsg-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:amd64 (1.22.1-2) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libumfpack6:amd64 (1:7.11.0+dfsg-2) ... Setting up libqt5sql5t64:amd64 (5.15.17+dfsg-4) ... Setting up libqt6core5compat6:amd64 (6.9.2-3) ... Setting up libfltk1.3t64:amd64 (1.3.11-3) ... Setting up libcups2t64:amd64 (2.4.14-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up gfortran-15 (15.2.0-7) ... Setting up libqt6dbus6:amd64 (6.9.2+dfsg-3) ... Setting up libkadm5clnt-mit12:amd64 (1.22.1-2) ... Setting up dh-python (6.20250414) ... Setting up libgnutls28-dev:amd64 (3.8.10-3) ... Setting up libinput10:amd64 (1.28.1-1) ... Setting up mesa-libgallium:amd64 (25.2.6-1) ... Setting up libvulkan-dev:amd64 (1.4.328.1-1) ... Setting up libqt5dbus5t64:amd64 (5.15.17+dfsg-4) ... Setting up libcurl4t64:amd64 (8.17.0-3) ... Setting up libkdb5-10t64:amd64 (1.22.1-2) ... Setting up libgbm1:amd64 (25.2.6-1) ... Setting up libqt5concurrent5t64:amd64 (5.15.17+dfsg-4) ... Setting up libgl1-mesa-dri:amd64 (25.2.6-1) ... Setting up libqt5network5t64:amd64 (5.15.17+dfsg-4) ... Setting up libcurl3t64-gnutls:amd64 (8.17.0-3) ... Setting up libqt5xml5t64:amd64 (5.15.17+dfsg-4) ... Setting up debhelper (13.28) ... Setting up libqt5test5t64:amd64 (5.15.17+dfsg-4) ... Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up qtbase5-dev-tools (5.15.17+dfsg-4) ... Setting up libegl-mesa0:amd64 (25.2.6-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up texinfo (7.2-5) ... Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... Setting up libkadm5srv-mit12:amd64 (1.22.1-2) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-4) ... Setting up krb5-multidev:amd64 (1.22.1-2) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... Setting up libproxy1v5:amd64 (0.5.11-2) ... Setting up libglx-mesa0:amd64 (25.2.6-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up libkrb5-dev:amd64 (1.22.1-2) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up libqt6gui6:amd64 (6.9.2+dfsg-3) ... Setting up libcurl4-openssl-dev:amd64 (8.17.0-3) ... Setting up libqt6network6:amd64 (6.9.2+dfsg-3) ... Setting up libglx-dev:amd64 (1.7.0-1+b2) ... Setting up libgl-dev:amd64 (1.7.0-1+b2) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libegl-dev:amd64 (1.7.0-1+b2) ... Setting up libqt6opengl6:amd64 (6.9.2+dfsg-3) ... Setting up libgl2ps1.4:amd64 (1.4.2+dfsg1-4) ... Setting up libqt6widgets6:amd64 (6.9.2+dfsg-3) ... Setting up libfltk-gl1.3t64:amd64 (1.3.11-3) ... Setting up libqt5gui5t64:amd64 (5.15.17+dfsg-4) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1+b3) ... Setting up libqt6openglwidgets6:amd64 (6.9.2+dfsg-3) ... Setting up libqt6printsupport6:amd64 (6.9.2+dfsg-3) ... Setting up libqt5widgets5t64:amd64 (5.15.17+dfsg-4) ... Setting up libqt6help6:amd64 (6.9.2-3) ... Setting up libqscintilla2-qt6-15:amd64 (2.14.1+dfsg-2) ... Setting up libqt5svg5:amd64 (5.15.17-2) ... Setting up libqt5svg5-dev:amd64 (5.15.17-2) ... Setting up libqt5opengl5t64:amd64 (5.15.17+dfsg-4) ... Setting up libqt5printsupport5t64:amd64 (5.15.17+dfsg-4) ... Setting up qtbase5-dev:amd64 (5.15.17+dfsg-4) ... Setting up libqt5opengl5-dev:amd64 (5.15.17+dfsg-4) ... Setting up libheif-plugin-dav1d:amd64 (1.20.2-2+b1) ... Setting up libheif-plugin-libde265:amd64 (1.20.2-2+b1) ... Setting up libheif1:amd64 (1.20.2-2+b1) ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.2.8+dfsg1-1) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.2.8+dfsg1-1) ... Setting up libgraphicsmagick-q16-3t64 (1.4+really1.3.45+hg17696-1+b1) ... Setting up libgraphicsmagick++-q16-12t64 (1.4+really1.3.45+hg17696-1+b1) ... Setting up octave (10.3.0-2) ... Setting up octave-dev (10.3.0-2) ... Setting up imagemagick-7.q16 (8:7.1.2.8+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist Setting up imagemagick (8:7.1.2.8+dfsg1-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mrtrix3-3.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mrtrix3_3.0.4-1_source.changes dpkg-buildpackage: info: source package mrtrix3 dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' [ -f config ] && python3 ./build clean || true find . -name '*.pyc' -delete rm clean \ config configure.log build.log \ core/version.cpp lib/mrtrix3/_version.py src/exec_version.cpp \ icons/mrview.qrc icons/shview.qrc rm: cannot remove 'clean': No such file or directory rm: cannot remove 'config': No such file or directory rm: cannot remove 'configure.log': No such file or directory rm: cannot remove 'build.log': No such file or directory rm: cannot remove 'core/version.cpp': No such file or directory rm: cannot remove 'lib/mrtrix3/_version.py': No such file or directory rm: cannot remove 'src/exec_version.cpp': No such file or directory rm: cannot remove 'icons/mrview.qrc': No such file or directory rm: cannot remove 'icons/shview.qrc': No such file or directory make[1]: [debian/rules:76: override_dh_clean] Error 1 (ignored) dh_clean make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' ./configure -openmp # -debug MRtrix build type requested: release version with openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (Debian 15.2.0-7) 15.2.0 Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.1 Checking for PNG library: not found - PNG support disabled Checking for FFTW library: fftw-3.3.10-sse2-avx Checking for OpenMP support: ok Checking for Qt moc: moc (version 5.15.17) Checking for Qt qmake: qmake (version 5.15.17) Checking for Qt rcc: rcc (version 5.15.17) Checking for Qt: 5.15.17 writing configuration to file './config': ok make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' ./build -verbose active config is default reading configuration from "config"... is_likely_text: bin/5ttgen: starts with shebang is_likely_text: bin/blend: starts with shebang is_likely_text: bin/convert_bruker: starts with shebang is_likely_text: bin/dwi2response: starts with shebang is_likely_text: bin/dwibiascorrect: starts with shebang is_likely_text: bin/dwicat: starts with shebang is_likely_text: bin/dwifslpreproc: starts with shebang is_likely_text: bin/dwigradcheck: starts with shebang is_likely_text: bin/dwinormalise: starts with shebang is_likely_text: bin/dwishellmath: starts with shebang is_likely_text: bin/for_each: starts with shebang is_likely_text: bin/gen_scheme: starts with shebang is_likely_text: bin/labelsgmfix: starts with shebang is_likely_text: bin/mrtrix3.py: utf-8 encoded is_likely_text: bin/mrtrix_cleanup: starts with shebang is_likely_text: bin/notfound: starts with shebang is_likely_text: bin/population_template: starts with shebang is_likely_text: bin/responsemean: starts with shebang getting MRtrix version from folder "."... fetching version information from "MRTRIX_BASE_VERSION" in "./core/version.h": 3.0.4 Using MRtrix version "3.0.4" version file "./core/version.cpp" is out of date - updating version file "./src/exec_version.cpp" is out of date - updating compiling TODO list... building targets: bin/maskdump bin/fixelcorrespondence bin/dirmerge bin/fixelfilter bin/mrregister bin/sh2power bin/mrdegibbs bin/tsfthreshold bin/fod2fixel bin/mtnormalise bin/tckstats bin/connectomestats bin/mrfilter bin/shbasis bin/mrhistmatch bin/maskfilter bin/tsfvalidate bin/tck2connectome bin/fixelconnectivity bin/tckglobal bin/mrinfo bin/dwidenoise bin/warpinvert bin/mrstats bin/label2mesh bin/voxel2mesh bin/dcmedit bin/meshconvert bin/fod2dec bin/warp2metric bin/mrcolour bin/afdconnectivity bin/warpinit bin/mrclusterstats bin/dirgen bin/mraverageheader bin/transformcompose bin/5ttcheck bin/connectome2tck bin/mrview bin/mrgrid bin/amp2response bin/connectomeedit bin/mrcentroid bin/peaks2fixel bin/tsfdivide bin/transformcalc bin/shview bin/dwi2adc bin/tcktransform bin/amp2sh bin/mredit bin/mrmetric bin/fixelreorient bin/tsfsmooth bin/5ttedit bin/fixel2tsf bin/meshfilter bin/mrthreshold bin/mrcat bin/fixel2voxel bin/warpconvert bin/sh2response bin/tckedit bin/tcksample bin/voxel2fixel bin/fixel2sh bin/tck2fixel bin/peaks2amp bin/tsfinfo bin/sh2peaks bin/tensor2metric bin/sh2amp bin/fixelconvert bin/dirflip bin/5tt2gmwmi bin/tckresample bin/label2colour bin/dirorder bin/labelconvert bin/labelstats bin/dirstat bin/tckconvert bin/mrconvert bin/mrcalc bin/shconv bin/dwi2fod bin/tckmap bin/5tt2vis bin/warpcorrect bin/tsfmult bin/dwi2mask bin/dwiextract bin/tckgen bin/transformconvert bin/tcksift2 bin/vectorstats bin/mrmath bin/fixelcrop bin/tcksift bin/dirsplit bin/tckinfo bin/dwi2tensor bin/dcminfo bin/tckdfc bin/fixelcfestats bin/mrhistogram bin/mrcheckerboardmask bin/fixel2peaks bin/mrtransform bin/mrdump bin/mesh2voxel TODO list contains 546 items Build will use 12 threads ( 1/546) [CC] tmp/core/algo/histogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/algo/histogram.cpp -o tmp/core/algo/histogram.o ( 2/546) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/math/average_space.cpp -o tmp/core/math/average_space.o ( 3/546) [CC] tmp/core/formats/ram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/ram.cpp -o tmp/core/formats/ram.o ( 4/546) [CC] tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o ( 5/546) [CC] tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/signal_handler.cpp -o tmp/core/signal_handler.o ( 6/546) [CC] tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o ( 7/546) [CC] tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/mrtrix.cpp -o tmp/core/mrtrix.o ( 8/546) [CC] tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/version.cpp -o tmp/core/version.o ( 9/546) [CC] tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/pipe.cpp -o tmp/core/formats/pipe.o ( 10/546) [CC] tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/stats.cpp -o tmp/core/stats.o ( 11/546) [CC] tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/default.cpp -o tmp/core/image_io/default.o ( 12/546) [CC] tmp/core/file/key_value.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/key_value.cpp -o tmp/core/file/key_value.o ( 13/546) [CC] tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/mgh.cpp -o tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/version.cpp -o tmp/core/version.o: core/version.cpp:5:30: warning: macro '__DATE__' might prevent reproducible builds [-Wdate-time] 5 | const char* build_date = __DATE__; | ^~~~~~~~ ( 14/546) [CC] tmp/core/image_io/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o ( 15/546) [CC] tmp/core/progressbar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/progressbar.cpp -o tmp/core/progressbar.o ( 16/546) [CC] tmp/core/formats/par.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS 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38/546) [CC] tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/mgz.cpp -o tmp/core/formats/mgz.o ( 39/546) [CC] tmp/core/math/stats/fwe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/ofstream.cpp -o tmp/core/file/ofstream.o ( 70/546) [CC] tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o ( 71/546) [CC] tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/config.cpp -o tmp/core/file/config.o ( 72/546) [CC] tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o ( 73/546) [CC] tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/gz.cpp -o tmp/core/image_io/gz.o ( 74/546) [CC] tmp/core/file/dicom/quick_scan.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o ( 75/546) [CC] tmp/core/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/phase_encoding.cpp -o tmp/core/phase_encoding.o ( 76/546) [CC] tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o ( 77/546) [CC] tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o ( 78/546) [CC] tmp/core/image_io/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o ( 79/546) [CC] tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/image_io/base.cpp -o tmp/core/image_io/base.o ( 80/546) [CC] tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/app.cpp -o tmp/core/app.o ( 81/546) [CC] tmp/src/exec_version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/exec_version.cpp -o tmp/src/exec_version.o ( 82/546) [CC] tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskdump.cpp -o tmp/cmd/maskdump.o ( 83/546) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o ( 84/546) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o ( 85/546) [CC] tmp/src/dwi/directions/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o ( 86/546) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o ( 87/546) [CC] tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/15/bits/exception_ptr.h:41, from /usr/include/c++/15/exception:168, from /usr/include/c++/15/ios:43, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from core/file/json_utils.cpp:17: In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12715:36: /usr/include/c++/15/bits/move.h:236:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12715:38: note: '' declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12768:32: /usr/include/c++/15/bits/move.h:236:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12768:34: note: '' declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12792:36: /usr/include/c++/15/bits/move.h:236:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12792:38: note: '' declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12822:32: /usr/include/c++/15/bits/move.h:236:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12822:34: note: '' declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]', inlined from 'nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:2890:18, inlined from 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]' at ./core/file/json.h:12897:24: /usr/include/c++/15/bits/move.h:236:7: warning: '.nlohmann::basic_json, std::allocator >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>::m_value' may be used uninitialized [-Wmaybe-uninitialized] 236 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function 'nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]': ./core/file/json.h:12897:26: note: '' declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 88/546) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o ( 89/546) [CC] tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o ( 90/546) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o ( 91/546) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cfe.cpp -o tmp/src/stats/cfe.o ( 92/546) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o ( 93/546) [CC] tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o ( 94/546) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o ( 95/546) [CC] tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o ( 96/546) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o ( 97/546) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o ( 98/546) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o ( 99/546) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o (100/546) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o (101/546) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o (102/546) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o (103/546) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o (104/546) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o (105/546) [CC] tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o (106/546) [CC] tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 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openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o (110/546) [CC] tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o (114/546) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/registration/transform/rigid.o (116/546) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o (117/546) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o (119/546) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o (120/546) [CC] tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2power.cpp -o tmp/cmd/sh2power.o (121/546) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o (125/546) [CC] tmp/src/dwi/fmls.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 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tmp/src/dwi/tractography/weights.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o (128/546) [CC] tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckstats.cpp -o tmp/cmd/tckstats.o (129/546) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o (130/546) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (131/546) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (132/546) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o (133/546) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/permtest.cpp -o tmp/src/stats/permtest.o (134/546) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o (135/546) [CC] tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shbasis.cpp -o tmp/cmd/shbasis.o (136/546) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o (137/546) [LD] lib/libmrtrix.so g++ tmp/core/algo/histogram.o tmp/core/math/average_space.o tmp/core/formats/ram.o tmp/core/formats/mrtrix_gz.o tmp/core/signal_handler.o tmp/core/mrtrix.o tmp/core/image_io/scratch.o tmp/core/version.o tmp/core/stats.o tmp/core/formats/pipe.o tmp/core/image_io/default.o tmp/core/file/key_value.o tmp/core/file/mgh.o tmp/core/image_io/tiff.o tmp/core/progressbar.o tmp/core/formats/par.o tmp/core/file/dicom/image.o tmp/core/math/bessel.o tmp/core/file/dicom/tree.o tmp/core/thread.o tmp/core/formats/mri.o tmp/core/math/stats/shuffle.o tmp/core/image_io/mosaic.o tmp/core/math/stats/import.o tmp/core/image_io/png.o tmp/core/formats/mrtrix.o tmp/core/file/dicom/study.o tmp/core/formats/nifti1_gz.o tmp/core/dwi/gradient.o tmp/core/misc/bitset.o tmp/core/formats/dicom.o tmp/core/formats/list.o tmp/core/filter/connected_components.o tmp/core/formats/tiff.o tmp/core/formats/mrtrix_utils.o tmp/core/file/tiff.o tmp/core/file/dicom/series.o tmp/core/formats/mgz.o tmp/core/math/stats/fwe.o tmp/core/math/erfinv.o tmp/core/formats/xds.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/image_io/fetch_store.o tmp/core/formats/nifti2_gz.o tmp/core/adapter/reslice.o tmp/core/axes.o tmp/core/file/dicom/mapper.o tmp/core/math/zstatistic.o tmp/core/formats/mgh.o tmp/core/formats/nifti2.o tmp/core/image_io/ram.o tmp/core/formats/png.o tmp/core/image_io/sparse.o tmp/core/stride.o tmp/core/math/stats/glm.o tmp/core/file/nifti_utils.o tmp/core/math/SH.o tmp/core/math/betainc.o tmp/core/file/dicom/patient.o tmp/core/image_io/variable_scaling.o tmp/core/file/mmap.o tmp/core/dwi/shells.o tmp/core/file/json_utils.o tmp/core/header.o tmp/core/file/name_parser.o tmp/core/datatype.o tmp/core/exception.o tmp/core/file/png.o tmp/core/file/ofstream.o tmp/core/file/dicom/select_cmdline.o tmp/core/file/config.o tmp/core/file/dicom/dict.o tmp/core/image_io/gz.o tmp/core/file/dicom/quick_scan.o tmp/core/phase_encoding.o tmp/core/file/dicom/element.o tmp/core/formats/nifti1.o tmp/core/image_io/pipe.o tmp/core/image_io/base.o tmp/core/app.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -o lib/libmrtrix.so g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (138/546) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o: In file included from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: ./core/math/SH.h: In function 'void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = MR::DWI::FMLS::SH_coefs]': ./core/math/SH.h:604:33: warning: '*AL.1211[0]' may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (139/546) [CC] tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o (140/546) [LB] bin/maskdump g++ tmp/src/exec_version.o tmp/cmd/maskdump.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskdump (141/546) [LB] bin/fixelcorrespondence g++ tmp/cmd/fixelcorrespondence.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcorrespondence (142/546) [LB] bin/dirmerge g++ tmp/cmd/dirmerge.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirmerge (143/546) [LB] bin/fixelfilter g++ tmp/src/fixel/matrix.o tmp/src/dwi/tractography/seeding/list.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/stats/cfe.o tmp/src/fixel/filter/connect.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/fixelfilter.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelfilter (144/546) [LB] bin/sh2power g++ tmp/cmd/sh2power.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2power (145/546) [LB] bin/mrdegibbs g++ tmp/src/exec_version.o tmp/cmd/mrdegibbs.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdegibbs (146/546) [LB] bin/tsfthreshold g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/cmd/tsfthreshold.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfthreshold (147/546) [LB] bin/fod2fixel g++ tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/directions/mask.o tmp/src/exec_version.o tmp/cmd/fod2fixel.o tmp/src/dwi/fmls.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2fixel (148/546) [LB] bin/tckstats g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/weights.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckstats.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckstats (149/546) [LB] bin/connectomestats g++ tmp/src/connectome/connectome.o tmp/src/stats/tfce.o tmp/src/connectome/enhance.o tmp/cmd/connectomestats.o tmp/src/exec_version.o tmp/src/stats/permtest.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomestats (150/546) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o (151/546) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o (152/546) [LB] bin/mtnormalise g++ tmp/cmd/mtnormalise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mtnormalise (153/546) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o (154/546) [LB] bin/tsfvalidate g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfvalidate.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfvalidate (155/546) [CC] tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o (156/546) [LB] bin/shbasis g++ tmp/cmd/shbasis.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shbasis (157/546) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o (158/546) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o (159/546) [CC] tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o (160/546) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o (161/546) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o (162/546) [CC] tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o (163/546) [LB] bin/maskfilter g++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/maskfilter (164/546) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o (165/546) [CC] tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o (166/546) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o (167/546) [CC] tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o (168/546) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o (169/546) [LB] bin/mrhistmatch g++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistmatch (170/546) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrstats.cpp -o tmp/cmd/mrstats.o (171/546) [LB] bin/fixelconnectivity g++ tmp/src/fixel/matrix.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/fixelconnectivity.o tmp/src/fixel/index_remapper.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconnectivity (172/546) [CC] tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/scalar.cpp -o tmp/src/surface/scalar.o (173/546) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o (174/546) [LB] bin/tck2connectome g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/connectome/matrix.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/file_base.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/connectome/connectome.o tmp/cmd/tck2connectome.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2connectome (175/546) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o (176/546) [CC] tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/connectome/lut.cpp -o tmp/src/connectome/lut.o (177/546) [CC] tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/polygon.cpp -o tmp/src/surface/polygon.o (178/546) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o (179/546) [LB] bin/mrstats g++ tmp/src/exec_version.o tmp/cmd/mrstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrstats (180/546) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/mesh.cpp -o tmp/src/surface/mesh.o (181/546) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o (182/546) [LB] bin/mrfilter g++ tmp/src/exec_version.o tmp/cmd/mrfilter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrfilter (183/546) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o (184/546) [LB] bin/mrinfo g++ tmp/src/exec_version.o tmp/cmd/mrinfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrinfo (185/546) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o (186/546) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o (187/546) [LB] bin/warpinvert g++ tmp/cmd/warpinvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinvert (188/546) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o (189/546) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o (190/546) [LB] bin/dcmedit g++ tmp/src/exec_version.o tmp/cmd/dcmedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcmedit (191/546) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o (192/546) [LB] bin/tckglobal g++ tmp/src/dwi/tractography/GT/externalenergy.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/GT/particlegrid.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tckglobal.o tmp/src/dwi/tractography/GT/internalenergy.o tmp/src/dwi/tractography/GT/mhsampler.o tmp/src/dwi/tractography/GT/gt.o tmp/src/dwi/tractography/GT/particle.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckglobal (193/546) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o (194/546) [CC] tmp/src/colourmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/colourmap.cpp -o tmp/src/colourmap.o (195/546) [CC] tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o (196/546) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o (197/546) [LB] bin/meshconvert g++ tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/exec_version.o tmp/src/surface/filter/vertex_transform.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o tmp/cmd/meshconvert.o tmp/src/surface/mesh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshconvert (198/546) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o (199/546) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o (200/546) [CC] tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpinit.cpp -o tmp/cmd/warpinit.o (201/546) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o (202/546) [LB] bin/label2mesh g++ tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o tmp/cmd/label2mesh.o tmp/src/surface/mesh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2mesh g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (203/546) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o (204/546) [CC] tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirgen.cpp -o tmp/cmd/dirgen.o (205/546) [LB] bin/voxel2mesh g++ tmp/src/surface/scalar.o tmp/src/surface/freesurfer.o tmp/src/exec_version.o tmp/src/connectome/lut.o tmp/cmd/voxel2mesh.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2mesh (206/546) [LB] bin/mrcolour g++ tmp/src/exec_version.o tmp/cmd/mrcolour.o tmp/src/colourmap.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcolour (207/546) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o (208/546) [CC] tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o (209/546) [LB] bin/warpinit g++ tmp/src/exec_version.o tmp/cmd/warpinit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpinit (210/546) [CC] tmp/cmd/5ttcheck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o (211/546) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o (212/546) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o (213/546) [LB] bin/dirgen g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirgen.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirgen (214/546) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o (215/546) [MOC] tmp/src/gui/color_button_moc.cpp moc src/gui/color_button.h -o tmp/src/gui/color_button_moc.cpp (216/546) [CC] tmp/src/gui/color_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/color_button_moc.cpp -o tmp/src/gui/color_button_moc.o (217/546) [LB] bin/warp2metric g++ tmp/cmd/warp2metric.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warp2metric (218/546) [CC] tmp/src/gui/mrview/tool/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/base.cpp -o tmp/src/gui/mrview/tool/base.o (219/546) [LB] bin/fod2dec g++ tmp/cmd/fod2dec.o tmp/src/exec_version.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fod2dec (220/546) [CC] tmp/src/gui/mrview/colourbars.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourbars.cpp -o tmp/src/gui/mrview/colourbars.o (221/546) [LB] bin/5ttcheck g++ tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttcheck (222/546) [RCC] tmp/src/gui/mrview/icons.cpp rcc icons/mrview.qrc -o tmp/src/gui/mrview/icons.cpp (223/546) [CC] tmp/src/gui/mrview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/icons.cpp -o tmp/src/gui/mrview/icons.o (224/546) [CC] tmp/src/gui/mrview/tool/connectome/selection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/selection.cpp -o tmp/src/gui/mrview/tool/connectome/selection.o (225/546) [LB] bin/transformcompose g++ tmp/src/exec_version.o tmp/cmd/transformcompose.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcompose (226/546) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp moc src/gui/mrview/tool/overlay.h -o tmp/src/gui/mrview/tool/overlay_moc.cpp (227/546) [CC] tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/overlay_moc.cpp -o tmp/src/gui/mrview/tool/overlay_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'Fixel::Fixel(const Fixel&)' at cmd/afdconnectivity.cpp:107:70, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:117:30, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from 'MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]' at src/dwi/fixel_map.h:47:28, inlined from 'MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = Fixel]' at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from 'MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = Fixel]' at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from 'AFDConnectivity::AFDConnectivity(MR::Image&, const MR::DWI::Directions::FastLookupSet&, const std::string&, const std::string&)' at cmd/afdconnectivity.cpp:131:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor 'AFDConnectivity::AFDConnectivity(MR::Image&, const MR::DWI::Directions::FastLookupSet&, const std::string&, const std::string&)': src/dwi/fixel_map.h:47:29: note: '' declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (228/546) [LB] bin/afdconnectivity g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/file_base.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/afdconnectivity (229/546) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/base_fixel.cpp -o tmp/src/gui/mrview/tool/fixel/base_fixel.o (230/546) [CC] tmp/src/gui/projection.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/projection.cpp -o tmp/src/gui/projection.o (231/546) [CC] tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/window.cpp -o tmp/src/gui/mrview/window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (232/546) [LB] bin/mrclusterstats g++ tmp/src/stats/cluster.o tmp/src/exec_version.o tmp/src/stats/tfce.o tmp/cmd/mrclusterstats.o tmp/src/stats/permtest.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrclusterstats (233/546) [CC] tmp/src/gui/mrview/sync/client.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/client.cpp -o tmp/src/gui/mrview/sync/client.o (234/546) [CC] tmp/src/gui/dialog/progress.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/progress.cpp -o tmp/src/gui/dialog/progress.o (235/546) [CC] tmp/src/gui/dialog/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dicom.cpp -o tmp/src/gui/dialog/dicom.o (236/546) [CC] tmp/src/gui/mrview/mode/slice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/slice.cpp -o tmp/src/gui/mrview/mode/slice.o (237/546) [CC] tmp/src/gui/dialog/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/list.cpp -o tmp/src/gui/dialog/list.o (238/546) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp moc src/gui/mrview/tool/odf/odf.h -o tmp/src/gui/mrview/tool/odf/odf_moc.cpp (239/546) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/odf_moc.cpp -o tmp/src/gui/mrview/tool/odf/odf_moc.o (240/546) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp moc src/gui/mrview/tool/connectome/connectome.h -o tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (241/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp -o tmp/src/gui/mrview/tool/connectome/connectome_moc.o (242/546) [CC] tmp/src/gui/dialog/image_properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/image_properties.cpp -o tmp/src/gui/dialog/image_properties.o (243/546) [LB] bin/connectome2tck g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/file_base.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/extract.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectome2tck (244/546) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp moc src/gui/mrview/sync/localsocketreader.h -o tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (245/546) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/localsocketreader_moc.cpp -o tmp/src/gui/mrview/sync/localsocketreader_moc.o (246/546) [CC] tmp/src/gui/mrview/mode/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/base.cpp -o tmp/src/gui/mrview/mode/base.o (247/546) [CC] tmp/src/gui/dialog/report_exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/report_exception.cpp -o tmp/src/gui/dialog/report_exception.o (248/546) [CC] tmp/src/gui/mrview/adjust_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/adjust_button.cpp -o tmp/src/gui/mrview/adjust_button.o (249/546) [LB] bin/mraverageheader g++ tmp/src/registration/transform/convergence_check.o tmp/cmd/mraverageheader.o tmp/src/registration/transform/initialiser.o tmp/src/exec_version.o tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/src/registration/transform/initialiser_helpers.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mraverageheader (250/546) [CC] tmp/cmd/mrview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/mrview.cpp -o tmp/cmd/mrview.o (251/546) [CC] tmp/src/gui/mrview/tool/overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/overlay.cpp -o tmp/src/gui/mrview/tool/overlay.o (252/546) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp moc src/gui/mrview/tool/screen_capture.h -o tmp/src/gui/mrview/tool/screen_capture_moc.cpp (253/546) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/screen_capture_moc.cpp -o tmp/src/gui/mrview/tool/screen_capture_moc.o (254/546) [CC] tmp/src/gui/mrview/colourmap_menu.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_menu.cpp -o tmp/src/gui/mrview/colourmap_menu.o (255/546) [CC] tmp/src/gui/mrview/displayable.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/displayable.cpp -o tmp/src/gui/mrview/displayable.o (256/546) [CC] tmp/src/gui/mrview/tool/odf/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/model.cpp -o tmp/src/gui/mrview/tool/odf/model.o (257/546) [CC] tmp/src/gui/mrview/tool/odf/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/item.cpp -o tmp/src/gui/mrview/tool/odf/item.o (258/546) [MOC] tmp/src/gui/mrview/window_moc.cpp moc src/gui/mrview/window.h -o tmp/src/gui/mrview/window_moc.cpp (259/546) [CC] tmp/src/gui/mrview/window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/window_moc.cpp -o tmp/src/gui/mrview/window_moc.o (260/546) [CC] tmp/src/gui/mrview/gui_image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/gui_image.cpp -o tmp/src/gui/mrview/gui_image.o (261/546) [CC] tmp/src/gui/dialog/file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/file.cpp -o tmp/src/gui/dialog/file.o (262/546) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/matrix_list.cpp -o tmp/src/gui/mrview/tool/connectome/matrix_list.o (263/546) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp moc src/gui/mrview/tool/connectome/node_list.h -o tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (264/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp -o tmp/src/gui/mrview/tool/connectome/node_list_moc.o (265/546) [CC] tmp/src/gui/mrview/tool/transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/transform.cpp -o tmp/src/gui/mrview/tool/transform.o (266/546) [CC] tmp/src/gui/gui.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/gui.cpp -o tmp/src/gui/gui.o (267/546) [CC] tmp/src/gui/mrview/tool/connectome/node.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node.cpp -o tmp/src/gui/mrview/tool/connectome/node.o (268/546) [CC] tmp/src/gui/shapes/sphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/sphere.cpp -o tmp/src/gui/shapes/sphere.o (269/546) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/undoentry.cpp -o tmp/src/gui/mrview/tool/roi_editor/undoentry.o (270/546) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp moc src/gui/mrview/adjust_button.h -o tmp/src/gui/mrview/adjust_button_moc.cpp (271/546) [CC] tmp/src/gui/mrview/adjust_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/adjust_button_moc.cpp -o tmp/src/gui/mrview/adjust_button_moc.o (272/546) [CC] tmp/src/gui/mrview/sync/localsocketreader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/localsocketreader.cpp -o tmp/src/gui/mrview/sync/localsocketreader.o (273/546) [CC] tmp/src/gui/mrview/tool/view.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/view.cpp -o tmp/src/gui/mrview/tool/view.o (274/546) [MOC] tmp/src/gui/opengl/lighting_moc.cpp moc src/gui/opengl/lighting.h -o tmp/src/gui/opengl/lighting_moc.cpp (275/546) [CC] tmp/src/gui/opengl/lighting_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/opengl/lighting_moc.cpp -o tmp/src/gui/opengl/lighting_moc.o (276/546) [CC] tmp/src/gui/shapes/halfsphere.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/halfsphere.cpp -o tmp/src/gui/shapes/halfsphere.o (277/546) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp moc src/gui/dwi/render_frame.h -o tmp/src/gui/dwi/render_frame_moc.cpp (278/546) [CC] tmp/src/gui/dwi/render_frame_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dwi/render_frame_moc.cpp -o tmp/src/gui/dwi/render_frame_moc.o (279/546) [CC] tmp/src/gui/opengl/shader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/shader.cpp -o tmp/src/gui/opengl/shader.o (280/546) [CC] tmp/src/gui/opengl/gl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl.cpp -o tmp/src/gui/opengl/gl.o (281/546) [CC] tmp/src/gui/dialog/dialog.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/dialog.cpp -o tmp/src/gui/dialog/dialog.o (282/546) [CC] tmp/src/gui/cursor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/cursor.cpp -o tmp/src/gui/cursor.o (283/546) [CC] tmp/src/gui/mrview/combo_box_error.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/combo_box_error.cpp -o tmp/src/gui/mrview/combo_box_error.o (284/546) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/file_data_vector.cpp -o tmp/src/gui/mrview/tool/connectome/file_data_vector.o (285/546) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp moc src/gui/mrview/tool/tractography/track_scalar_file.h -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (286/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (287/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/interprocesscommunicator.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator.o (288/546) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/legacy.cpp -o tmp/src/gui/mrview/tool/fixel/legacy.o (289/546) [CC] tmp/src/gui/mrview/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/volume.cpp -o tmp/src/gui/mrview/volume.o (290/546) [CC] tmp/src/gui/dwi/render_frame.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/render_frame.cpp -o tmp/src/gui/dwi/render_frame.o (291/546) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/connectome.cpp -o tmp/src/gui/mrview/tool/connectome/connectome.o (292/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp moc src/gui/mrview/tool/tractography/tractography.h -o tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (293/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractography_moc.o (294/546) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/model.cpp -o tmp/src/gui/mrview/tool/roi_editor/model.o (295/546) [CC] tmp/src/gui/mrview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/file_open.cpp -o tmp/src/gui/mrview/file_open.o (296/546) [CC] tmp/src/gui/mrview/tool/connectome/edge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/edge.cpp -o tmp/src/gui/mrview/tool/connectome/edge.o (297/546) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp moc src/gui/mrview/tool/odf/preview.h -o tmp/src/gui/mrview/tool/odf/preview_moc.cpp (298/546) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/odf/preview_moc.cpp -o tmp/src/gui/mrview/tool/odf/preview_moc.o (299/546) [CC] tmp/src/gui/mrview/colourmap_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/colourmap_button.cpp -o tmp/src/gui/mrview/colourmap_button.o (300/546) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractography.cpp -o tmp/src/gui/mrview/tool/tractography/tractography.o (301/546) [CC] tmp/src/gui/mrview/tool/odf/preview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/preview.cpp -o tmp/src/gui/mrview/tool/odf/preview.o (302/546) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/item.cpp -o tmp/src/gui/mrview/tool/roi_editor/item.o (303/546) [CC] tmp/src/gui/crosshair.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/crosshair.cpp -o tmp/src/gui/crosshair.o (304/546) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_overlay.cpp -o tmp/src/gui/mrview/tool/connectome/node_overlay.o (305/546) [MOC] tmp/src/gui/mrview/displayable_moc.cpp moc src/gui/mrview/displayable.h -o tmp/src/gui/mrview/displayable_moc.cpp (306/546) [CC] tmp/src/gui/mrview/displayable_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/displayable_moc.cpp -o tmp/src/gui/mrview/displayable_moc.o (307/546) [MOC] tmp/src/gui/lighting_dock_moc.cpp moc src/gui/lighting_dock.h -o tmp/src/gui/lighting_dock_moc.cpp (308/546) [CC] tmp/src/gui/lighting_dock_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/lighting_dock_moc.cpp -o tmp/src/gui/lighting_dock_moc.o (309/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/fixel.cpp -o tmp/src/gui/mrview/tool/fixel/fixel.o (310/546) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp moc src/gui/mrview/sync/interprocesscommunicator.h -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (311/546) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp -o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (312/546) [LB] bin/dwidenoise g++ tmp/src/exec_version.o tmp/cmd/dwidenoise.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwidenoise (313/546) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp moc src/gui/mrview/tool/connectome/selection.h -o tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (314/546) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/connectome/selection_moc.cpp -o tmp/src/gui/mrview/tool/connectome/selection_moc.o (315/546) [CC] tmp/src/gui/opengl/lighting.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/lighting.cpp -o tmp/src/gui/opengl/lighting.o (316/546) [CC] tmp/src/gui/mrview/tool/screen_capture.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/screen_capture.cpp -o tmp/src/gui/mrview/tool/screen_capture.o (317/546) [CC] tmp/src/gui/opengl/font.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/font.cpp -o tmp/src/gui/opengl/font.o (318/546) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp moc src/gui/mrview/mode/ortho.h -o tmp/src/gui/mrview/mode/ortho_moc.cpp (319/546) [CC] tmp/src/gui/mrview/mode/ortho_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/ortho_moc.cpp -o tmp/src/gui/mrview/mode/ortho_moc.o (320/546) [CC] tmp/src/gui/dwi/renderer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dwi/renderer.cpp -o tmp/src/gui/dwi/renderer.o (321/546) [CC] tmp/src/gui/mrview/mode/volume.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/volume.cpp -o tmp/src/gui/mrview/mode/volume.o (322/546) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp moc src/gui/dialog/image_properties.h -o tmp/src/gui/dialog/image_properties_moc.cpp (323/546) [CC] tmp/src/gui/dialog/image_properties_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/dialog/image_properties_moc.cpp -o tmp/src/gui/dialog/image_properties_moc.o (324/546) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp moc src/gui/mrview/mode/lightbox.h -o tmp/src/gui/mrview/mode/lightbox_moc.cpp (325/546) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/mode/lightbox_moc.cpp -o tmp/src/gui/mrview/mode/lightbox_moc.o (326/546) [CC] tmp/src/gui/lighting_dock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/lighting_dock.cpp -o tmp/src/gui/lighting_dock.o (327/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/tractogram.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram.o (328/546) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp moc src/gui/mrview/spin_box.h -o tmp/src/gui/mrview/spin_box_moc.cpp (329/546) [CC] tmp/src/gui/mrview/spin_box_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/spin_box_moc.cpp -o tmp/src/gui/mrview/spin_box_moc.o (330/546) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp moc src/gui/mrview/tool/view.h -o tmp/src/gui/mrview/tool/view_moc.cpp (331/546) [CC] tmp/src/gui/mrview/tool/view_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/view_moc.cpp -o tmp/src/gui/mrview/tool/view_moc.o (332/546) [CC] tmp/src/gui/mrview/sync/syncmanager.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/syncmanager.cpp -o tmp/src/gui/mrview/sync/syncmanager.o (333/546) [CC] tmp/src/gui/mrview/mode/lightbox.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/lightbox.cpp -o tmp/src/gui/mrview/mode/lightbox.o (334/546) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/colourmap_observers.cpp -o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (335/546) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp moc src/gui/mrview/tool/fixel/fixel.h -o tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (336/546) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp -o tmp/src/gui/mrview/tool/fixel/fixel_moc.o (337/546) [CC] tmp/src/gui/shapes/cylinder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cylinder.cpp -o tmp/src/gui/shapes/cylinder.o (338/546) [CC] tmp/src/gui/mrview/tool/odf/odf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/odf/odf.cpp -o tmp/src/gui/mrview/tool/odf/odf.o (339/546) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp moc src/gui/mrview/tool/tractography/tractogram.h -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (340/546) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp -o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (341/546) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp moc src/gui/mrview/tool/transform.h -o tmp/src/gui/mrview/tool/transform_moc.cpp (342/546) [CC] tmp/src/gui/mrview/tool/transform_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/transform_moc.cpp -o tmp/src/gui/mrview/tool/transform_moc.o (343/546) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp moc src/gui/mrview/colourmap_button.h -o tmp/src/gui/mrview/colourmap_button_moc.cpp (344/546) [CC] tmp/src/gui/mrview/colourmap_button_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/colourmap_button_moc.cpp -o tmp/src/gui/mrview/colourmap_button_moc.o (345/546) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp moc src/gui/mrview/sync/syncmanager.h -o tmp/src/gui/mrview/sync/syncmanager_moc.cpp (346/546) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/sync/syncmanager_moc.cpp -o tmp/src/gui/mrview/sync/syncmanager_moc.o (347/546) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/shaders.cpp -o tmp/src/gui/mrview/tool/connectome/shaders.o (348/546) [CC] tmp/src/gui/mrview/mode/ortho.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/mode/ortho.cpp -o tmp/src/gui/mrview/mode/ortho.o (349/546) [CC] tmp/src/gui/shapes/cube.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shapes/cube.cpp -o tmp/src/gui/shapes/cube.o (350/546) [CC] tmp/src/gui/dialog/opengl.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/dialog/opengl.cpp -o tmp/src/gui/dialog/opengl.o (351/546) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp moc src/gui/mrview/combo_box_error.h -o tmp/src/gui/mrview/combo_box_error_moc.cpp (352/546) [CC] tmp/src/gui/mrview/combo_box_error_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/combo_box_error_moc.cpp -o tmp/src/gui/mrview/combo_box_error_moc.o (353/546) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp moc src/gui/mrview/tool/roi_editor/roi.h -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (354/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (355/546) [CC] tmp/src/gui/opengl/gl_core_3_3.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/opengl/gl_core_3_3.cpp -o tmp/src/gui/opengl/gl_core_3_3.o (356/546) [CC] tmp/src/gui/mrview/sync/processlock.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/sync/processlock.cpp -o tmp/src/gui/mrview/sync/processlock.o (357/546) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/image4D.cpp -o tmp/src/gui/mrview/tool/fixel/image4D.o (358/546) [CC] tmp/src/gui/mrview/tool/fixel/directory.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/fixel/directory.cpp -o tmp/src/gui/mrview/tool/fixel/directory.o (359/546) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/tractography/track_scalar_file.cpp -o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (360/546) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/connectome/node_list.cpp -o tmp/src/gui/mrview/tool/connectome/node_list.o (361/546) [CC] tmp/src/gui/color_button.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/color_button.cpp -o tmp/src/gui/color_button.o (362/546) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/mrview/tool/roi_editor/roi.cpp -o tmp/src/gui/mrview/tool/roi_editor/roi.o (363/546) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o (364/546) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2response.cpp -o tmp/cmd/amp2response.o (365/546) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o (366/546) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o (367/546) [CC] tmp/cmd/peaks2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o (368/546) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o (369/546) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: 'virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const' was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by 'virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const' 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (370/546) [LB] bin/connectomeedit g++ tmp/src/connectome/connectome.o tmp/src/stats/tfce.o tmp/src/connectome/enhance.o tmp/src/exec_version.o tmp/cmd/connectomeedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/connectomeedit (371/546) [CC] tmp/src/gui/shview/file_open.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/file_open.cpp -o tmp/src/gui/shview/file_open.o (372/546) [LB] bin/mrcentroid g++ tmp/src/exec_version.o tmp/cmd/mrcentroid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcentroid (373/546) [CC] tmp/cmd/shview.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ cmd/shview.cpp -o tmp/cmd/shview.o (374/546) [RCC] tmp/src/gui/shview/icons.cpp rcc icons/shview.qrc -o tmp/src/gui/shview/icons.cpp (375/546) [CC] tmp/src/gui/shview/icons.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/icons.cpp -o tmp/src/gui/shview/icons.o (376/546) [CC] tmp/src/gui/shview/render_window.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ src/gui/shview/render_window.cpp -o tmp/src/gui/shview/render_window.o (377/546) [LB] bin/tsfdivide g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfdivide.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfdivide (378/546) [MOC] tmp/src/gui/shview/render_window_moc.cpp moc src/gui/shview/render_window.h -o tmp/src/gui/shview/render_window_moc.cpp (379/546) [CC] tmp/src/gui/shview/render_window_moc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -idirafter /usr/include/x86_64-linux-gnu/qt5 -idirafter /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -idirafter /usr/include/x86_64-linux-gnu/qt5/QtSvg -idirafter /usr/include/x86_64-linux-gnu/qt5/QtWidgets -idirafter /usr/include/x86_64-linux-gnu/qt5/QtGui -idirafter /usr/include/x86_64-linux-gnu/qt5/QtNetwork -idirafter /usr/include/x86_64-linux-gnu/qt5/QtCore -idirafter /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ tmp/src/gui/shview/render_window_moc.cpp -o tmp/src/gui/shview/render_window_moc.o (380/546) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o (381/546) [LB] bin/peaks2fixel g++ tmp/src/exec_version.o tmp/cmd/peaks2fixel.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2fixel (382/546) [CC] tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o (383/546) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o (384/546) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mredit.cpp -o tmp/cmd/mredit.o (385/546) [LB] bin/mrview g++ tmp/src/gui/color_button_moc.o tmp/src/gui/mrview/tool/base.o tmp/src/dwi/tractography/seeding/list.o tmp/src/gui/mrview/colourbars.o tmp/src/gui/mrview/icons.o tmp/src/gui/mrview/tool/connectome/selection.o tmp/src/dwi/tractography/properties.o tmp/src/gui/mrview/tool/overlay_moc.o tmp/src/gui/mrview/tool/fixel/base_fixel.o tmp/src/gui/projection.o tmp/src/gui/mrview/window.o tmp/src/gui/mrview/sync/client.o tmp/src/gui/dialog/progress.o tmp/src/gui/dialog/dicom.o tmp/src/gui/mrview/mode/slice.o tmp/src/gui/dialog/list.o tmp/src/gui/mrview/tool/odf/odf_moc.o tmp/src/gui/mrview/tool/connectome/connectome_moc.o tmp/src/gui/dialog/image_properties.o tmp/src/gui/mrview/sync/localsocketreader_moc.o tmp/src/dwi/directions/set.o tmp/src/gui/mrview/mode/base.o tmp/src/gui/dialog/report_exception.o tmp/src/gui/mrview/adjust_button.o tmp/cmd/mrview.o tmp/src/gui/mrview/tool/overlay.o tmp/src/gui/mrview/tool/screen_capture_moc.o tmp/src/gui/mrview/colourmap_menu.o tmp/src/gui/mrview/displayable.o tmp/src/gui/mrview/tool/odf/model.o tmp/src/gui/mrview/tool/odf/item.o tmp/src/gui/mrview/window_moc.o tmp/src/gui/mrview/gui_image.o tmp/src/gui/dialog/file.o tmp/src/gui/mrview/tool/connectome/matrix_list.o tmp/src/gui/mrview/tool/connectome/node_list_moc.o tmp/src/gui/mrview/tool/transform.o tmp/src/gui/gui.o tmp/src/gui/mrview/tool/connectome/node.o tmp/src/exec_version.o tmp/src/gui/shapes/sphere.o tmp/src/gui/mrview/tool/roi_editor/undoentry.o tmp/src/gui/mrview/adjust_button_moc.o tmp/src/gui/mrview/sync/localsocketreader.o tmp/src/gui/mrview/tool/view.o tmp/src/gui/opengl/lighting_moc.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/opengl/shader.o tmp/src/gui/opengl/gl.o tmp/src/gui/dialog/dialog.o tmp/src/gui/cursor.o tmp/src/gui/mrview/combo_box_error.o tmp/src/gui/mrview/tool/connectome/file_data_vector.o tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o tmp/src/gui/mrview/sync/interprocesscommunicator.o tmp/src/gui/mrview/tool/fixel/legacy.o tmp/src/surface/scalar.o tmp/src/gui/mrview/volume.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/mrview/tool/connectome/connectome.o tmp/src/gui/mrview/tool/tractography/tractography_moc.o tmp/src/gui/mrview/tool/roi_editor/model.o tmp/src/gui/mrview/file_open.o tmp/src/gui/mrview/tool/connectome/edge.o tmp/src/gui/mrview/tool/odf/preview_moc.o tmp/src/gui/mrview/colourmap_button.o tmp/src/gui/mrview/tool/tractography/tractography.o tmp/src/surface/mesh_multi.o tmp/src/gui/mrview/tool/odf/preview.o tmp/src/gui/mrview/tool/roi_editor/item.o tmp/src/gui/crosshair.o tmp/src/gui/mrview/tool/connectome/node_overlay.o tmp/src/connectome/connectome.o tmp/src/gui/mrview/displayable_moc.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/mrview/tool/fixel/fixel.o tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o tmp/src/gui/mrview/tool/connectome/selection_moc.o tmp/src/gui/opengl/lighting.o tmp/src/gui/mrview/tool/screen_capture.o tmp/src/dwi/tractography/rng.o tmp/src/gui/opengl/font.o tmp/src/gui/mrview/mode/ortho_moc.o tmp/src/gui/dwi/renderer.o tmp/src/gui/mrview/mode/volume.o tmp/src/gui/dialog/image_properties_moc.o tmp/src/gui/mrview/mode/lightbox_moc.o tmp/src/gui/lighting_dock.o tmp/src/gui/mrview/tool/tractography/tractogram.o tmp/src/gui/mrview/spin_box_moc.o tmp/src/gui/mrview/tool/view_moc.o tmp/src/gui/mrview/sync/syncmanager.o tmp/src/gui/mrview/mode/lightbox.o tmp/src/gui/mrview/tool/connectome/colourmap_observers.o tmp/src/gui/mrview/tool/fixel/fixel_moc.o tmp/src/gui/shapes/cylinder.o tmp/src/gui/mrview/tool/odf/odf.o tmp/src/gui/mrview/tool/tractography/tractogram_moc.o tmp/src/gui/mrview/tool/transform_moc.o tmp/src/gui/mrview/colourmap_button_moc.o tmp/src/gui/mrview/sync/syncmanager_moc.o tmp/src/dwi/tractography/file_base.o tmp/src/gui/mrview/tool/connectome/shaders.o tmp/src/gui/mrview/mode/ortho.o tmp/src/surface/mesh.o tmp/src/gui/shapes/cube.o tmp/src/gui/dialog/opengl.o tmp/src/dwi/directions/predefined.o tmp/src/gui/mrview/combo_box_error_moc.o tmp/src/surface/freesurfer.o tmp/src/gui/mrview/tool/roi_editor/roi_moc.o tmp/src/colourmap.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/mrview/sync/processlock.o tmp/src/gui/mrview/tool/fixel/image4D.o tmp/src/gui/mrview/tool/fixel/directory.o tmp/src/gui/mrview/tool/tractography/track_scalar_file.o tmp/src/connectome/lut.o tmp/src/gui/mrview/tool/connectome/node_list.o tmp/src/surface/polygon.o tmp/src/gui/color_button.o tmp/src/gui/mrview/tool/roi_editor/roi.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/mrview (386/546) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o (387/546) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o (388/546) [LB] bin/shview g++ tmp/src/gui/color_button_moc.o tmp/src/gui/shview/file_open.o tmp/src/gui/gui.o tmp/src/exec_version.o tmp/src/gui/crosshair.o tmp/src/gui/projection.o tmp/src/gui/opengl/lighting_moc.o tmp/cmd/shview.o tmp/src/gui/lighting_dock_moc.o tmp/src/gui/dialog/progress.o tmp/src/gui/dialog/dicom.o tmp/src/gui/dialog/list.o tmp/src/gui/shview/icons.o tmp/src/gui/shapes/halfsphere.o tmp/src/gui/dwi/render_frame_moc.o tmp/src/gui/opengl/shader.o tmp/src/gui/opengl/gl.o tmp/src/gui/shview/render_window.o tmp/src/gui/opengl/lighting.o tmp/src/gui/dialog/dialog.o tmp/src/dwi/directions/set.o tmp/src/gui/dialog/report_exception.o tmp/src/dwi/directions/predefined.o tmp/src/gui/opengl/font.o tmp/src/gui/opengl/gl_core_3_3.o tmp/src/gui/dwi/render_frame.o tmp/src/gui/dwi/renderer.o tmp/src/gui/lighting_dock.o tmp/src/gui/shview/render_window_moc.o tmp/src/gui/color_button.o tmp/src/gui/dialog/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so /usr/lib/x86_64-linux-gnu/libQt5Svg.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so /usr/lib/x86_64-linux-gnu/libQt5Gui.so /usr/lib/x86_64-linux-gnu/libQt5Network.so /usr/lib/x86_64-linux-gnu/libQt5Core.so -lGL -lpthread -o bin/shview (389/546) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o (390/546) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o (391/546) [LB] bin/mrgrid g++ tmp/src/exec_version.o tmp/cmd/mrgrid.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrgrid (392/546) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o (393/546) [LB] bin/tsfsmooth g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfsmooth.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfsmooth (394/546) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o (395/546) [LB] bin/mredit g++ tmp/src/exec_version.o tmp/cmd/mredit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mredit (396/546) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o (397/546) [LB] bin/amp2response g++ tmp/src/exec_version.o tmp/cmd/amp2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2response (398/546) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o (399/546) [LB] bin/tcktransform g++ tmp/src/dwi/tractography/rng.o tmp/cmd/tcktransform.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcktransform (400/546) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcat.cpp -o tmp/cmd/mrcat.o (401/546) [LB] bin/5ttedit g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o tmp/cmd/5ttedit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5ttedit (402/546) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o (403/546) [CC] tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o (404/546) [LB] bin/meshfilter g++ tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/base.o tmp/src/surface/filter/smooth.o tmp/src/exec_version.o tmp/cmd/meshfilter.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o tmp/src/surface/mesh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/meshfilter (405/546) [CC] tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2response.cpp -o tmp/cmd/sh2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:548, from /usr/include/c++/15/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function 'void* memcpy(void*, const void*, size_t)', inlined from 'static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:527:11, inlined from 'void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:517:65, inlined from 'Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]' at /usr/include/eigen3/Eigen/src/Core/DenseStorage.h:593:27, inlined from 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]' at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'DWI2ADC::DWI2ADC(const DWI2ADC&)' at cmd/dwi2adc.cpp:50:7, inlined from 'MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]' at ./core/algo/threaded_loop.h:276:11, inlined from 'void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]' at ./core/algo/threaded_loop.h:376:19, inlined from 'void run()' at cmd/dwi2adc.cpp:109:10: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: '*(__int128 unsigned*)result' may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (406/546) [LB] bin/dwi2adc g++ tmp/cmd/dwi2adc.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2adc (407/546) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o (408/546) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o (409/546) [LB] bin/fixelreorient g++ tmp/src/exec_version.o tmp/cmd/fixelreorient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelreorient (410/546) [CC] tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o (411/546) [CC] tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckedit.cpp -o tmp/cmd/tckedit.o (412/546) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksample.cpp -o tmp/cmd/tcksample.o (413/546) [LB] bin/fixel2tsf g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2tsf (414/546) [LB] bin/sh2response g++ tmp/src/exec_version.o tmp/cmd/sh2response.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2response (415/546) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o (416/546) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o (417/546) [LB] bin/warpconvert g++ tmp/src/exec_version.o tmp/cmd/warpconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpconvert (418/546) [CC] tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o (419/546) [LB] bin/amp2sh g++ tmp/src/exec_version.o tmp/cmd/amp2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/amp2sh (420/546) [LB] bin/tckedit g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/editing/editing.o tmp/src/dwi/tractography/editing/worker.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/editing/receiver.o tmp/cmd/tckedit.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckedit (421/546) [CC] tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o (422/546) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o (423/546) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o (424/546) [LB] bin/mrthreshold g++ tmp/src/exec_version.o tmp/cmd/mrthreshold.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrthreshold (425/546) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o (426/546) [LB] bin/mrcat g++ tmp/cmd/mrcat.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcat (427/546) [CC] tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o (428/546) [LB] bin/tsfinfo g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfinfo.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfinfo (429/546) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o (430/546) [LB] bin/peaks2amp g++ tmp/src/exec_version.o tmp/cmd/peaks2amp.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/peaks2amp (431/546) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o (432/546) [LB] bin/fixel2voxel g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2voxel (433/546) [CC] tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirflip.cpp -o tmp/cmd/dirflip.o (434/546) [LB] bin/transformcalc g++ tmp/src/exec_version.o tmp/cmd/transformcalc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformcalc (435/546) [LB] bin/voxel2fixel g++ tmp/cmd/voxel2fixel.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/voxel2fixel (436/546) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o (437/546) [CC] tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckresample.cpp -o tmp/cmd/tckresample.o (438/546) [LB] bin/fixel2sh g++ tmp/cmd/fixel2sh.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2sh (439/546) [CC] tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/label2colour.cpp -o tmp/cmd/label2colour.o (440/546) [LB] bin/mrregister g++ tmp/src/registration/transform/convergence_check.o tmp/src/dwi/directions/predefined.o tmp/src/registration/linear.o tmp/src/registration/transform/affine.o tmp/src/exec_version.o tmp/cmd/mrregister.o tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o tmp/src/registration/nonlinear.o tmp/src/registration/transform/initialiser.o tmp/src/registration/transform/initialiser_helpers.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrregister (441/546) [LB] bin/dirflip g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirflip.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirflip (442/546) [LB] bin/tcksample g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/cmd/tcksample.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksample (443/546) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirorder.cpp -o tmp/cmd/dirorder.o (444/546) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function 'void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]': ./core/math/SH.h:604:33: warning: '*AL.658[0]' may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (445/546) [LB] bin/sh2peaks g++ tmp/cmd/sh2peaks.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2peaks (446/546) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/labelstats.cpp -o tmp/cmd/labelstats.o (447/546) [LB] bin/5tt2gmwmi g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5tt2gmwmi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2gmwmi (448/546) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirstat.cpp -o tmp/cmd/dirstat.o (449/546) [LB] bin/tckresample g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tckresample.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckresample (450/546) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o (451/546) [LB] bin/label2colour g++ tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/cmd/label2colour.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/label2colour (452/546) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o (453/546) [LB] bin/tensor2metric g++ tmp/src/exec_version.o tmp/cmd/tensor2metric.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tensor2metric (454/546) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o (455/546) [LB] bin/sh2amp g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/sh2amp.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/sh2amp (456/546) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/shconv.cpp -o tmp/cmd/shconv.o (457/546) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o (458/546) [LB] bin/labelconvert g++ tmp/cmd/labelconvert.o tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/src/connectome/lut.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelconvert (459/546) [LB] bin/labelstats g++ tmp/src/connectome/connectome.o tmp/src/exec_version.o tmp/cmd/labelstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/labelstats (460/546) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o (461/546) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o (462/546) [LB] bin/fixelconvert g++ tmp/src/exec_version.o tmp/cmd/fixelconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelconvert (463/546) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckmap.cpp -o tmp/cmd/tckmap.o (464/546) [LB] bin/tck2fixel g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/cmd/tck2fixel.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tck2fixel (465/546) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o (466/546) [LB] bin/mrmetric g++ tmp/cmd/mrmetric.o tmp/src/registration/transform/convergence_check.o tmp/src/exec_version.o tmp/src/registration/transform/rigid.o tmp/src/registration/multi_contrast.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmetric (467/546) [CC] tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o (468/546) [LB] bin/shconv g++ tmp/cmd/shconv.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/shconv (469/546) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o (470/546) [LB] bin/dirorder g++ tmp/cmd/dirorder.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirorder (471/546) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o (472/546) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o (473/546) [CC] tmp/cmd/dwiextract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o (474/546) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o (475/546) [LB] bin/tsfmult g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/cmd/tsfmult.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tsfmult (476/546) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o (477/546) [LB] bin/dirstat g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirstat.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirstat (478/546) [LB] bin/5tt2vis g++ tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/cmd/5tt2vis.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/5tt2vis (479/546) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o (480/546) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o (481/546) [LB] bin/mrcalc g++ tmp/src/exec_version.o tmp/cmd/mrcalc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcalc (482/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'BoundsCheck::BoundsCheck(const BoundsCheck&)' at cmd/warpcorrect.cpp:53:7, inlined from 'MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]' at ./core/algo/threaded_loop.h:276:11, inlined from 'void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]' at ./core/algo/threaded_loop.h:376:19, inlined from 'void run()' at cmd/warpcorrect.cpp:113:10: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function 'void run()': cmd/warpcorrect.cpp:110:8: note: 'func' declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ (483/546) [LB] bin/warpcorrect g++ tmp/cmd/warpcorrect.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/warpcorrect (484/546) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o (485/546) [LB] bin/tckconvert g++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/tckconvert.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckconvert (486/546) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o (487/546) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o (488/546) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o (489/546) [LB] bin/dwiextract g++ tmp/cmd/dwiextract.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwiextract (490/546) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o (491/546) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o (492/546) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o (493/546) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o (494/546) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o (495/546) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o (496/546) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (497/546) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o (498/546) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o (499/546) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (500/546) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o (501/546) [CC] tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (502/546) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (503/546) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o (504/546) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o (505/546) [LB] bin/transformconvert g++ tmp/src/exec_version.o tmp/cmd/transformconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/transformconvert (506/546) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o (507/546) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrmath.cpp -o tmp/cmd/mrmath.o (508/546) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o (509/546) [LB] bin/dwi2fod g++ tmp/src/dwi/directions/predefined.o tmp/cmd/dwi2fod.o tmp/src/dwi/sdeconv/msmt_csd.o tmp/src/dwi/sdeconv/csd.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2fod g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (510/546) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o (511/546) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o (512/546) [LB] bin/dwi2mask g++ tmp/src/exec_version.o tmp/cmd/dwi2mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2mask (513/546) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (514/546) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o (515/546) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o (516/546) [LB] bin/vectorstats g++ tmp/src/exec_version.o tmp/src/stats/permtest.o tmp/cmd/vectorstats.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/vectorstats (517/546) [LB] bin/dirsplit g++ tmp/src/dwi/directions/file.o tmp/src/exec_version.o tmp/cmd/dirsplit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dirsplit (518/546) [LB] bin/mrconvert g++ tmp/src/exec_version.o tmp/cmd/mrconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrconvert (519/546) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o (520/546) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o (521/546) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o (522/546) [LB] bin/dcminfo g++ tmp/src/exec_version.o tmp/cmd/dcminfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dcminfo (523/546) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o (524/546) [LB] bin/tckinfo g++ tmp/src/dwi/tractography/rng.o tmp/cmd/tckinfo.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckinfo (525/546) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)' at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:123:21, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from 'void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/SIFT/model.h:228:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function 'void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]': src/dwi/tractography/SIFT/model.h:228:31: note: '' declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (526/546) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o (527/546) [LB] bin/fixelcrop g++ tmp/src/exec_version.o tmp/cmd/fixelcrop.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcrop (528/546) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o (529/546) [LB] bin/mrhistogram g++ tmp/src/exec_version.o tmp/cmd/mrhistogram.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrhistogram (530/546) [LB] bin/mrcheckerboardmask g++ tmp/src/exec_version.o tmp/cmd/mrcheckerboardmask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrcheckerboardmask (531/546) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o (532/546) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mrdump.cpp -o tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (533/546) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)' at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:117:30, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from 'MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/fixel_map.h:47:28, inlined from 'MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from 'MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from 'MR::DWI::Tractography::SIFT::Model::Model(Set&, const MR::DWI::Directions::FastLookupSet&) [with Set = MR::Image; Fixel = MR::DWI::Tractography::SIFT2::Fixel]' at src/dwi/tractography/SIFT/model.h:68:42, inlined from 'MR::DWI::Tractography::SIFT2::TckFactor::TckFactor(MR::Image&, const MR::DWI::Directions::FastLookupSet&)' at src/dwi/tractography/SIFT2/tckfactor.h:74:35, inlined from 'void run()' at cmd/tcksift2.cpp:165:36: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function 'void run()': src/dwi/fixel_map.h:47:29: note: '' declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (534/546) [LB] bin/tcksift2 g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/SIFT2/tckfactor.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/SIFT2/fixel_updater.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/SIFT2/reg_calculator.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/SIFT2/line_search.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tcksift2.o tmp/src/dwi/tractography/SIFT2/streamline_stats.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift2 (535/546) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o (536/546) [LB] bin/fixel2peaks g++ tmp/src/exec_version.o tmp/cmd/fixel2peaks.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixel2peaks (537/546) [LB] bin/dwi2tensor g++ tmp/src/exec_version.o tmp/cmd/dwi2tensor.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/dwi2tensor g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from 'class MR::DWI::Tractography::SIFT::Model' 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)' at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:123:21, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from 'void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/tractography/SIFT/model.h:228:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function 'void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]': src/dwi/tractography/SIFT/model.h:228:31: note: '' declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor 'Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]', inlined from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)' at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from 'MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)' at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:117:30, inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1434:21, inlined from 'MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/fixel_map.h:47:28, inlined from 'MR::DWI::Tractography::Mapping::Fixel_TD_map::Fixel_TD_map(const MR::Header&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/tractography/mapping/fixel_td_map.h:48:31, inlined from 'MR::DWI::Tractography::SIFT::ModelBase::ModelBase(MR::Image&, const MR::DWI::Directions::FastLookupSet&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/tractography/SIFT/model_base.h:137:39, inlined from 'MR::DWI::Tractography::SIFT::Model::Model(Set&, const MR::DWI::Directions::FastLookupSet&) [with Set = MR::Image; Fixel = MR::DWI::Tractography::SIFT::Fixel]' at src/dwi/tractography/SIFT/model.h:68:42, inlined from 'MR::DWI::Tractography::SIFT::SIFTer::SIFTer(MR::Image&, const MR::DWI::Directions::FastLookupSet&)' at src/dwi/tractography/SIFT/sifter.h:64:39, inlined from 'void run()' at cmd/tcksift.cpp:91:30: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: '.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In function 'void run()': src/dwi/fixel_map.h:47:29: note: '' declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (538/546) [LB] bin/tcksift g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/SIFT/track_index_range.o tmp/src/dwi/tractography/SIFT/gradient_sort.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/SIFT/sift.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/SIFT/sifter.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/SIFT/track_contribution.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/cmd/tcksift.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tcksift g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with openmp" -pthread -fPIC -mmmx -msse -msse2 -mfpmath=sse -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/mrtrix3-3.0.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -mmmx -msse -msse2 -mfpmath=sse -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -idirafter /usr/include/x86_64-linux-gnu -idirafter /usr/include/webp -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -idirafter /usr/include/eigen3 cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of 'class MR::DWI::Tractography::Mapping::Fixel_TD_map': src/dwi/tractography/SIFT/model_base.h:124:15: required from 'class MR::DWI::Tractography::SIFT::ModelBase' 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: 'bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by 'bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]' 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function 'void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]': ./core/math/SH.h:604:33: warning: '*AL.2087[0]' may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (539/546) [LB] bin/tckgen g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/seeding/dynamic.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/tracking/shared.o tmp/src/dwi/tractography/tracking/tractography.o tmp/cmd/tckgen.o tmp/src/dwi/tractography/algorithms/iFOD1.o tmp/src/dwi/fmls.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/seeding/basic.o tmp/src/dwi/tractography/tracking/early_exit.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/tracking/write_kernel.o tmp/src/dwi/tractography/tracking/method.o tmp/src/dwi/tractography/seeding/seeding.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/algorithms/iFOD2.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/ACT/gmwmi.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/seeding/gmwmi.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckgen (540/546) [LB] bin/tckmap g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/writer.o tmp/cmd/tckmap.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/gaussian/mapper.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckmap (541/546) [LB] bin/mesh2voxel g++ tmp/src/surface/scalar.o tmp/src/surface/freesurfer.o tmp/src/surface/mesh_multi.o tmp/src/surface/algo/mesh2image.o tmp/src/surface/filter/base.o tmp/src/exec_version.o tmp/src/surface/filter/vertex_transform.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/surface/polygon.o tmp/cmd/mesh2voxel.o tmp/src/surface/mesh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mesh2voxel (542/546) [LB] bin/tckdfc g++ tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/resampling.o tmp/cmd/tckdfc.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/tckdfc (543/546) [LB] bin/fixelcfestats g++ tmp/src/fixel/matrix.o tmp/src/dwi/tractography/seeding/list.o tmp/src/fixel/index_remapper.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/properties.o tmp/src/stats/cfe.o tmp/src/stats/permtest.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/fixel/filter/smooth.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/cmd/fixelcfestats.o tmp/src/exec_version.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/file_base.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/roi.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/fixelcfestats (544/546) [LB] bin/mrdump g++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrdump (545/546) [LB] bin/mrmath g++ tmp/src/exec_version.o tmp/cmd/mrmath.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrmath (546/546) [LB] bin/mrtransform g++ tmp/cmd/mrtransform.o tmp/src/exec_version.o tmp/src/registration/multi_contrast.o tmp/src/dwi/directions/predefined.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,-z,relro -Wl,-z,now -lz -ltiff -lfftw3 -fopenmp -Wl,-rpath,$ORIGIN/../lib -L./lib -o bin/mrtransform make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_install # Remove __pycache__ dirs that were created in build time tests find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_installdocs dh_installchangelogs dh_installman dh_perl debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' cp debian/mrtrix3.links.in debian/mrtrix3.links : # Generate symlinks for all the mr* commands for f in debian/mrtrix3/usr/lib/mrtrix3/bin/*; do \ bn=$(basename $f); \ if [ "$bn" = "dirsplit" ]; then \ continue; \ fi; \ echo "usr/lib/mrtrix3/bin/$bn usr/bin/$bn" >> debian/mrtrix3.links; \ echo "/usr/share/man/man1/mrtrix3.1.gz /usr/share/man/man1/$bn.1.gz" >> debian/mrtrix3.links; \ done echo "/usr/share/mrtrix3/matlab /usr/share/matlab/site/m/mrtrix" >> debian/mrtrix3.links echo "/usr/share/mrtrix3/matlab /usr/share/octave/site/m/mrtrix" >> debian/mrtrix3.links dh_link make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_compress -X.html make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/mrtrix3-3.0.4' dh_shlibdeps -l /build/reproducible-path/mrtrix3-3.0.4/lib dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged make[1]: Leaving directory '/build/reproducible-path/mrtrix3-3.0.4' dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mrtrix3-dbgsym' in '../mrtrix3-dbgsym_3.0.4-1_amd64.deb'. dpkg-deb: building package 'mrtrix3-doc' in '../mrtrix3-doc_3.0.4-1_all.deb'. dpkg-deb: building package 'mrtrix3' in '../mrtrix3_3.0.4-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mrtrix3_3.0.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../mrtrix3_3.0.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2618479 and its subdirectories I: Current time: Thu Nov 27 06:41:46 -12 2025 I: pbuilder-time-stamp: 1764268906 Thu Nov 27 18:41:51 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Thu Nov 27 18:41:51 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Thu Nov 27 19:06:52 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Thu Nov 27 19:06:52 UTC 2025 I: mrtrix3_3.0.4-1_amd64.changes: Format: 1.8 Date: Fri, 11 Aug 2023 16:34:05 +0200 Source: mrtrix3 Binary: mrtrix3 mrtrix3-dbgsym mrtrix3-doc Architecture: amd64 all Version: 3.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: mrtrix3 - diffusion-weighted MRI white matter tractography mrtrix3-doc - documentation for mrtrix3 Changes: mrtrix3 (3.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * eigen-3.4.patch: delete; applied upstream. * debian_build_cfg patch: unfuzz. * mrtrix_version.patch: unfuzz. * python3.patch: unfuzz. Checksums-Sha1: a88fa54cf7a6fadb50324a2d0ce4e8fc262578fb 492244640 mrtrix3-dbgsym_3.0.4-1_amd64.deb f6b55ff023cd5a57654487da983a3b03c3da3843 48512 mrtrix3-doc_3.0.4-1_all.deb 57a31a94561cd474e5f98a397784197a1c13bd43 15511 mrtrix3_3.0.4-1_amd64.buildinfo 1074e0947d8ee4c8adc2db9e27e67bb26cd830b4 10217672 mrtrix3_3.0.4-1_amd64.deb Checksums-Sha256: 0f0ab98c1820e22d117dea565ecc39b700a6bfa18f3b76d65971e5bb67ce25d8 492244640 mrtrix3-dbgsym_3.0.4-1_amd64.deb 7dad89bc09006c43b071b86f2a03d79ffa283d1976861bea425fcc2591fddfec 48512 mrtrix3-doc_3.0.4-1_all.deb e4ce1a074c466a98ff146109bcdaf551401c6127ab4f619ac2dc3e1439a7d5dc 15511 mrtrix3_3.0.4-1_amd64.buildinfo 569275d4f5feaa01f4964ccd7fee28349ccd1a5e3128bb209c9a53c1d2111af6 10217672 mrtrix3_3.0.4-1_amd64.deb Files: de0d975ac4437ccc71c3d3faf10a4c49 492244640 debug optional mrtrix3-dbgsym_3.0.4-1_amd64.deb 89f77b0fe35d1cdea3dcadf00264bbb4 48512 doc optional mrtrix3-doc_3.0.4-1_all.deb 3de66cb434bac073556836d98b3b2442 15511 science optional mrtrix3_3.0.4-1_amd64.buildinfo ada721ef136f2983a811ed33bff5a2d8 10217672 science optional mrtrix3_3.0.4-1_amd64.deb Thu Nov 27 19:06:53 UTC 2025 I: diffoscope 309 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_37-94886.service; invocation ID: cba391b837b54913b302b2c5c5009862 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Vp1P3yo9/mrtrix3_3.0.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Vp1P3yo9/mrtrix3_3.0.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Vp1P3yo9/mrtrix3_3.0.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Vp1P3yo9/b1/mrtrix3_3.0.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Vp1P3yo9/b2/mrtrix3_3.0.4-1_amd64.changes ## close_archive (total time: 0.001s) 0.001s 152 calls diffoscope.comparators.xz.XzContainer 0.000s 142 calls diffoscope.comparators.deb.DebTarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 10 calls diffoscope.comparators.tar.TarContainer ## command (total time: 1295.121s) 338.858s 32098 calls readelf 295.577s 3487 calls diff 283.352s 140 calls objcopy 209.938s 6494 calls objdump 165.492s 152 calls xz 1.861s 770 calls strings 0.020s 15 calls cmp 0.019s 15 calls cmp (external) 0.004s 65 calls cmp (internal) ## compare_files (cumulative) (total time: 42904.250s) 7205.258s 1 call abc.DotChangesFile 7205.233s 1 call abc.DebFile 7205.182s 2 calls abc.XzFile 7204.627s 1 call abc.DebDataTarFile 7203.848s 70 calls abc.ElfFile 6816.060s 349 calls diffoscope.comparators.elf.ElfCodeSection 62.491s 1051 calls diffoscope.comparators.elf.ElfSection 1.502s 69 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.032s 1 call abc.TarFile 0.010s 1 call abc.TextFile 0.007s 1 call abc.Md5sumsFile ## container_extract (total time: 254.899s) 165.498s 152 calls diffoscope.comparators.xz.XzContainer 88.073s 600 calls diffoscope.comparators.deb.DebTarContainer 1.322s 154 calls diffoscope.comparators.deb.DebContainer 0.005s 12 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 43.016s) 43.016s 34019 calls linediff ## has_same_content_as (total time: 0.034s) 0.027s 70 calls abc.ElfFile 0.004s 1051 calls diffoscope.comparators.elf.ElfSection 0.002s 349 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 69 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 2 calls abc.DebFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.TextFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 1 call abc.DotChangesFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.DebDataTarFile ## main (total time: 8011.943s) 8011.937s 2 calls outputs 0.006s 1 call cleanup ## open_archive (total time: 0.002s) 0.001s 142 calls diffoscope.comparators.deb.DebTarContainer 0.001s 152 calls diffoscope.comparators.xz.XzContainer 0.000s 10 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## output (total time: 803.378s) 796.615s 1 call html 3.620s 1 call text 3.144s 1 call json ## recognizes (total time: 260.900s) 165.481s 2030 calls diffoscope.comparators.utils.archive.ArchiveMember 92.296s 18100 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 3.067s 12 calls diffoscope.comparators.binary.FilesystemFile 0.055s 270 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 3.576s) 3.576s 1550 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 2h 13min 32.222s CPU time consumed: 2h 42min 38.992s Memory peak: 13.8G (swap: 0B) Thu Nov 27 21:20:29 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Thu Nov 27 21:20:29 UTC 2025 E: mrtrix3 failed to build reproducibly in forky on amd64. Thu Nov 27 21:21:49 UTC 2025 I: Removing signed mrtrix3_3.0.4-1_amd64.buildinfo.asc files: removed './b1/mrtrix3_3.0.4-1_amd64.buildinfo.asc' removed './b2/mrtrix3_3.0.4-1_amd64.buildinfo.asc'