Mon Dec 16 03:18:02 UTC 2024  I: starting to build r-bioc-rcwl/experimental/i386 on jenkins on '2024-12-16 03:17'
Mon Dec 16 03:18:02 UTC 2024  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/51575/console.log
Mon Dec 16 03:18:02 UTC 2024  I: Downloading source for experimental/r-bioc-rcwl=1.22.0+ds-1
--2024-12-16 03:18:02--  http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.22.0%2bds-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2176 (2.1K) [text/prs.lines.tag]
Saving to: ‘r-bioc-rcwl_1.22.0+ds-1.dsc’

     0K ..                                                    100%  360M=0s

2024-12-16 03:18:02 (360 MB/s) - ‘r-bioc-rcwl_1.22.0+ds-1.dsc’ saved [2176/2176]

Mon Dec 16 03:18:02 UTC 2024  I: r-bioc-rcwl_1.22.0+ds-1.dsc
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Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-rcwl
Binary: r-bioc-rcwl
Architecture: all
Version: 1.22.0+ds-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Michael R. Crusoe <crusoe@debian.org>
Homepage: https://rcwl.org/Rcwl/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-rcwl
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-rcwl.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-yaml, r-bioc-s4vectors, r-bioc-biocparallel, r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool
Package-List:
 r-bioc-rcwl deb gnu-r optional arch=all
Checksums-Sha1:
 d14316fe28fc33690d03eb46c1ebfa6f79961c3b 99116 r-bioc-rcwl_1.22.0+ds.orig.tar.xz
 f10bea789c512259cf03a68c3d71320d17dfcacf 4684 r-bioc-rcwl_1.22.0+ds-1.debian.tar.xz
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 4ecf1a70c1aa9f9acd1e85fa79f1de055efa485efb175659d3713490d3c2c464 4684 r-bioc-rcwl_1.22.0+ds-1.debian.tar.xz
Files:
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 88feae632892d5b9970eefa28e0686a9 4684 r-bioc-rcwl_1.22.0+ds-1.debian.tar.xz
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Mon Dec 16 03:18:02 UTC 2024  I: Checking whether the package is not for us
Mon Dec 16 03:18:02 UTC 2024  I: Starting 1st build on remote node ionos12-i386.debian.net.
Mon Dec 16 03:18:02 UTC 2024  I: Preparing to do remote build '1' on ionos12-i386.debian.net.
Mon Dec 16 03:18:38 UTC 2024  I: Deleting $TMPDIR on ionos12-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Dec 15 15:18:04 -12 2024
I: pbuilder-time-stamp: 1734319084
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [r-bioc-rcwl_1.22.0+ds-1.dsc]
I: copying [./r-bioc-rcwl_1.22.0+ds.orig.tar.xz]
I: copying [./r-bioc-rcwl_1.22.0+ds-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Nov 26 17:18:32 2024 
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv:                issuer "crusoe@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-rcwl_1.22.0+ds-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-rcwl in r-bioc-rcwl-1.22.0+ds
dpkg-source: info: unpacking r-bioc-rcwl_1.22.0+ds.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rcwl_1.22.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_packaged_software
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/5661/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
  DISTRIBUTION='experimental'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='674cb4e8764549e9aaa2b130d15b5972'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='5661'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YuU69Zoh/pbuilderrc_C3pO --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YuU69Zoh/b1 --logfile b1/build.log r-bioc-rcwl_1.22.0+ds-1.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://46.16.76.132:3128'
I: uname -a
  Linux ionos12-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/5661/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-yaml, r-bioc-s4vectors, r-bioc-biocparallel, r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19952 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-yaml; however:
  Package r-cran-yaml is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however:
  Package r-bioc-s4vectors is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however:
  Package r-bioc-biocparallel is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-batchtools; however:
  Package r-cran-batchtools is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-diagrammer; however:
  Package r-cran-diagrammer is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-shiny; however:
  Package r-cran-shiny is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-r.utils; however:
  Package r-cran-r.utils is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-codetools; however:
  Package r-cran-codetools is not installed.
 pbuilder-satisfydepends-dummy depends on cwltool; however:
  Package cwltool is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
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libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libyuv0{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-arcp{a} python3-argcomplete{a} python3-autocommand{a} python3-cachecontrol{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-coloredlogs{a} python3-cwl-utils{a} python3-dateutil{a} python3-filelock{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-lxml{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-msgpack{a} python3-mypy-extensions{a} python3-networkx{a} python3-packaging{a} python3-pkg-resources{a} python3-prov{a} python3-psutil{a} 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x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  black bzip2-doc cme curl devscripts fonts-liberation git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx node-highlight.js node-jquery nodejs psmisc publicsuffix python3-bs4 python3-cssselect python3-gdal python3-html5lib python3-html5rdf python3-matplotlib python3-numpy python3-pygraphviz python3-scipy python3-yaml r-cran-ape r-cran-bench r-cran-brio r-cran-broom r-cran-cairo r-cran-callr r-cran-covr r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-fastmatch r-cran-formatr r-cran-formattable r-cran-future r-cran-ggplot2 r-cran-gridsvg r-cran-httr r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-markdown r-cran-mass r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-mvtnorm r-cran-nleqslv r-cran-openssl r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-ps r-cran-r.rsp r-cran-ragg r-cran-ranger r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rsvg r-cran-runit r-cran-sf r-cran-shinyjs r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tinytest r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 390 newly installed, 0 to remove and 0 not upgraded.
Need to get 255 MB of archives. After unpacking 982 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: r-bioc-biocparallel which is a virtual package and is not provided by any available package

Unable to resolve dependencies!  Giving up...
The following NEW packages will be installed:
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libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libimagequant0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libltdl7{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnuma1{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} 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r-cran-igraph{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mime{a} r-cran-munsell{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-promises{a} r-cran-purrr{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-readr{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rstudioapi{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-tzdb{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-visnetwork{a} r-cran-vroom{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  black bzip2-doc cme curl devscripts fonts-liberation git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx node-highlight.js node-jquery nodejs psmisc publicsuffix python3-bs4 python3-cssselect python3-gdal python3-html5lib python3-html5rdf python3-matplotlib python3-numpy python3-pygraphviz python3-scipy python3-yaml r-cran-ape r-cran-bench r-cran-brio r-cran-broom r-cran-cairo r-cran-callr r-cran-covr r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-fastmatch r-cran-formatr r-cran-formattable r-cran-future r-cran-ggplot2 r-cran-gridsvg r-cran-httr r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-markdown r-cran-mass r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-mvtnorm r-cran-nleqslv r-cran-openssl r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-ps r-cran-r.rsp r-cran-ragg r-cran-ranger r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rsvg r-cran-runit r-cran-sf r-cran-shinyjs r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tinytest r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 390 newly installed, 0 to remove and 0 not upgraded.
Need to get 255 MB of archives. After unpacking 982 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/5661 and its subdirectories
Mon Dec 16 03:18:38 UTC 2024  W: No second build log, what happened?
Mon Dec 16 03:18:38 UTC 2024  W: Downloading the build dependencies failed
Mon Dec 16 03:18:38 UTC 2024  W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case.
Mon Dec 16 03:18:38 UTC 2024  W: Network problems are automatically rescheduled after some hours.