Sun Dec 1 23:37:36 UTC 2024 I: starting to build r-bioc-degreport/experimental/i386 on jenkins on '2024-12-01 23:37' Sun Dec 1 23:37:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_20/35070/console.log Sun Dec 1 23:37:36 UTC 2024 I: Downloading source for experimental/r-bioc-degreport=1.42.0+dfsg-1 --2024-12-01 23:37:36-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-degreport/r-bioc-degreport_1.42.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2622 (2.6K) [text/prs.lines.tag] Saving to: ‘r-bioc-degreport_1.42.0+dfsg-1.dsc’ 0K .. 100% 335M=0s 2024-12-01 23:37:36 (335 MB/s) - ‘r-bioc-degreport_1.42.0+dfsg-1.dsc’ saved [2622/2622] Sun Dec 1 23:37:37 UTC 2024 I: r-bioc-degreport_1.42.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-degreport Binary: r-bioc-degreport Architecture: all Version: 1.42.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/DEGreport/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-degreport Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-degreport.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biocgenerics, r-cran-broom, r-cran-circlize, r-bioc-complexheatmap, r-cran-cowplot, r-bioc-consensusclusterplus, r-cran-cluster, r-cran-dendextend, r-bioc-deseq2, r-cran-dplyr, r-bioc-edger, r-cran-ggplot2, r-cran-ggdendro, r-cran-ggrepel, r-cran-knitr, r-cran-logging, r-cran-magrittr, r-cran-psych, r-cran-rcolorbrewer, r-cran-reshape, r-cran-rlang, r-cran-scales, r-cran-stringr, r-cran-stringi, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-cran-tidyr, r-cran-tibble Package-List: r-bioc-degreport deb gnu-r optional arch=all Checksums-Sha1: ecf8f6e971eb9d8a9bb8beeaad35a660a819664a 11200276 r-bioc-degreport_1.42.0+dfsg.orig.tar.xz 43af5cfef65c114ee1836fae544d871299699c80 3848 r-bioc-degreport_1.42.0+dfsg-1.debian.tar.xz Checksums-Sha256: 65babb0e487b616ac08098b4557ca7e2ed6e279beac635be1054f1ce01a6f03d 11200276 r-bioc-degreport_1.42.0+dfsg.orig.tar.xz 7ad81a2ebb88282761ad2fab151b621f55ace0016f24c5f36962a343b85c9b50 3848 r-bioc-degreport_1.42.0+dfsg-1.debian.tar.xz Files: 32c99a3e37668ababb34008321d858ed 11200276 r-bioc-degreport_1.42.0+dfsg.orig.tar.xz 00c557910b713f2e46b71b986e1036d5 3848 r-bioc-degreport_1.42.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdJjLgSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+binLEP+weS4SvGcDfQKAErTaUJIQ/uXkA6vz5l zuFcKb9NeToQc9OGcIwqz4OSV+ZWU2aCUoOhJbVwFkHQaRgSCKR/mquiatokSRak WV1k6Isayu94Rwy2ZM12lO8QrVsmn8jdTxSVYUjSdudGPIuhvgoRQwLe0qLFrbF8 ytvagerQ3lOGTbB/SkbmZZTkdK7qh+NVy9zxmawZvKOGbj4GSoyO9lx5B5neVwi9 b4H6JVTsYFTz+gkHDrrT4vmyMsoJqgC4MzHw8sx4X2H6kpjE1eaRcxBn5udTo1mh 0yrj4OYBGEGvuv9fWCnhL0y90s1gcjN79UskTlszlb41A6zhETgtSVZruvSZsWjX RyTUULAApswDUcoVtBIYnW2jcDa4N1F60boBNc6I1J/IG+IBTfw+U7RW4N/QMAd9 XR4lXnQni4+T9Omz/tKJb2GGRBwKQAiYJGEJwwANvv2kmYgx0ciAdZl4MZ/mPDGx CnLOjfOLT3wOC6shEcTnakhORLbyAZYcuW1csoEzami8IvOO7l9SfTqdhjDwqb9P ArsdUr70/S05rdDxOK5qiozZ52bn+HsUHBji52BIeexYcP/BxKlnJUisqRmMPOje uACQGXJwLB5f3tFRK3kT6RelBwWLBbtcaIpJAv710nOq7CUePMNyRO2KAKZy4Gvm Mjz4uFL/dTbc =UFBW -----END PGP SIGNATURE----- Sun Dec 1 23:37:37 UTC 2024 I: Checking whether the package is not for us Sun Dec 1 23:37:37 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Sun Dec 1 23:37:37 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Sun Dec 1 23:37:56 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 3 18:00:37 -12 2026 I: pbuilder-time-stamp: 1767506437 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-degreport_1.42.0+dfsg-1.dsc] I: copying [./r-bioc-degreport_1.42.0+dfsg.orig.tar.xz] I: copying [./r-bioc-degreport_1.42.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 29 09:43:20 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-degreport_1.42.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-degreport in r-bioc-degreport-1.42.0+dfsg dpkg-source: info: unpacking r-bioc-degreport_1.42.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-degreport_1.42.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20188/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='1adc5c988f0b4b648ba56dff2f1a8b52' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20188' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Vkx5bqBD/pbuilderrc_wTQy --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Vkx5bqBD/b1 --logfile b1/build.log r-bioc-degreport_1.42.0+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20188/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biocgenerics, r-cran-broom, r-cran-circlize, r-bioc-complexheatmap, r-cran-cowplot, r-bioc-consensusclusterplus, r-cran-cluster, r-cran-dendextend, r-bioc-deseq2, r-cran-dplyr, r-bioc-edger, r-cran-ggplot2, r-cran-ggdendro, r-cran-ggrepel, r-cran-knitr, r-cran-logging, r-cran-magrittr, r-cran-psych, r-cran-rcolorbrewer, r-cran-reshape, r-cran-rlang, r-cran-scales, r-cran-stringr, r-cran-stringi, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-cran-tidyr, r-cran-tibble dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-cran-broom; however: Package r-cran-broom is not installed. pbuilder-satisfydepends-dummy depends on r-cran-circlize; however: Package r-cran-circlize is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-complexheatmap; however: Package r-bioc-complexheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cowplot; however: Package r-cran-cowplot is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-consensusclusterplus; however: Package r-bioc-consensusclusterplus is not installed. pbuilder-satisfydepends-dummy depends on r-cran-cluster; however: Package r-cran-cluster is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dendextend; however: Package r-cran-dendextend is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-deseq2; however: Package r-bioc-deseq2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-edger; however: Package r-bioc-edger is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggdendro; however: Package r-cran-ggdendro is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-logging; however: Package r-cran-logging is not installed. pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however: Package r-cran-magrittr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-psych; however: Package r-cran-psych is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape; however: Package r-cran-reshape is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rlang; however: Package r-cran-rlang is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringr; however: Package r-cran-stringr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringi; however: Package r-cran-stringi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tidyr; however: Package r-cran-tidyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tibble; however: Package r-cran-tibble is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} 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libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-all{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-consensusclusterplus{a} r-bioc-s4vectors{a} r-cran-backports{a} r-cran-broom{a} r-cran-circlize{a} r-cran-cli{a} r-cran-cluster{a} r-cran-colorspace{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-generics{a} r-cran-ggdendro{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-globaloptions{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-isoband{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-logging{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-mnormt{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-psych{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-reshape{a} r-cran-rlang{a} r-cran-scales{a} r-cran-shape{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-abind r-cran-aer r-cran-ape r-cran-bbmle r-cran-bench r-cran-bit64 r-cran-boot r-cran-brio r-cran-bslib r-cran-cairo r-cran-callr r-cran-car r-cran-cardata r-cran-caret r-cran-cmprsk r-cran-coda r-cran-codetools r-cran-commonmark r-cran-corrplot r-cran-covr r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-doparallel r-cran-dynamictreecut r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-forcats r-cran-foreach r-cran-formatr r-cran-formattable r-cran-fpc r-cran-fs r-cran-gam r-cran-gee r-cran-geepack r-cran-ggbeeswarm r-cran-glmnet r-cran-gmm r-cran-gparotation r-cran-gplots r-cran-gridgraphics r-cran-gridsvg r-cran-heatmaply r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-interp r-cran-irlba r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lintr r-cran-lme4 r-cran-lmtest r-cran-lobstr r-cran-lsmeans r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mclust r-cran-metafor r-cran-microbenchmark r-cran-mime r-cran-mockery r-cran-mockr r-cran-modeldata r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-nnet r-cran-ordinal r-cran-patchwork r-cran-pkgdown r-cran-pkgload r-cran-plm r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-psychtools r-cran-pvclust r-cran-quantreg r-cran-ragg r-cran-rcsdp r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmarkdown r-cran-rmysql r-cran-robust r-cran-robustbase r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sandwich r-cran-sass r-cran-seriation r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-spatialreg r-cran-spdep r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-systemfit r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-tikzdevice r-cran-tinytex r-cran-tseries r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-venndiagram r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 263 newly installed, 0 to remove and 0 not upgraded. Need to get 187 MB of archives. After unpacking 487 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-complexheatmap but it is not installable Depends: r-bioc-deseq2 which is a virtual package and is not provided by any available package Depends: r-bioc-edger which is a virtual package and is not provided by any available package Depends: r-bioc-summarizedexperiment but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-all{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-consensusclusterplus{a} r-bioc-s4vectors{a} r-cran-backports{a} r-cran-broom{a} r-cran-circlize{a} r-cran-cli{a} r-cran-cluster{a} r-cran-colorspace{a} r-cran-cowplot{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-generics{a} r-cran-ggdendro{a} r-cran-ggplot2{a} r-cran-ggrepel{a} r-cran-globaloptions{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-isoband{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-logging{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-mnormt{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-png{a} r-cran-psych{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-reshape{a} r-cran-rlang{a} r-cran-scales{a} r-cran-shape{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-abind r-cran-aer r-cran-ape r-cran-bbmle r-cran-bench r-cran-bit64 r-cran-boot r-cran-brio r-cran-bslib r-cran-cairo r-cran-callr r-cran-car r-cran-cardata r-cran-caret r-cran-cmprsk r-cran-coda r-cran-codetools r-cran-commonmark r-cran-corrplot r-cran-covr r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-doparallel r-cran-dynamictreecut r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-forcats r-cran-foreach r-cran-formatr r-cran-formattable r-cran-fpc r-cran-fs r-cran-gam r-cran-gee r-cran-geepack r-cran-ggbeeswarm r-cran-glmnet r-cran-gmm r-cran-gparotation r-cran-gplots r-cran-gridgraphics r-cran-gridsvg r-cran-heatmaply r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-interp r-cran-irlba r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lintr r-cran-lme4 r-cran-lmtest r-cran-lobstr r-cran-lsmeans r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-mclust r-cran-metafor r-cran-microbenchmark r-cran-mime r-cran-mockery r-cran-mockr r-cran-modeldata r-cran-multcomp r-cran-mvtnorm r-cran-network r-cran-nnet r-cran-ordinal r-cran-patchwork r-cran-pkgdown r-cran-pkgload r-cran-plm r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-psychtools r-cran-pvclust r-cran-quantreg r-cran-ragg r-cran-rcsdp r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmarkdown r-cran-rmysql r-cran-robust r-cran-robustbase r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-sandwich r-cran-sass r-cran-seriation r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-spatialreg r-cran-spdep r-cran-spelling r-cran-survey r-cran-survival r-cran-svglite r-cran-systemfit r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-tikzdevice r-cran-tinytex r-cran-tseries r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-venndiagram r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 263 newly installed, 0 to remove and 0 not upgraded. Need to get 187 MB of archives. After unpacking 487 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20188 and its subdirectories Sun Dec 1 23:37:57 UTC 2024 W: No second build log, what happened? Sun Dec 1 23:37:57 UTC 2024 W: Downloading the build dependencies failed Sun Dec 1 23:37:57 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sun Dec 1 23:37:57 UTC 2024 W: Network problems are automatically rescheduled after some hours.