Wed Nov 27 23:20:27 UTC 2024 I: starting to build porechop/experimental/i386 on jenkins on '2024-11-27 23:20' Wed Nov 27 23:20:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_13/52547/console.log Wed Nov 27 23:20:27 UTC 2024 I: Downloading source for experimental/porechop=0.2.4+dfsg-7 --2024-11-27 23:20:27-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/porechop/porechop_0.2.4%2bdfsg-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2088 (2.0K) [text/prs.lines.tag] Saving to: ‘porechop_0.2.4+dfsg-7.dsc’ 0K .. 100% 182M=0s 2024-11-27 23:20:27 (182 MB/s) - ‘porechop_0.2.4+dfsg-7.dsc’ saved [2088/2088] Wed Nov 27 23:20:27 UTC 2024 I: porechop_0.2.4+dfsg-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: porechop Binary: porechop Architecture: any Version: 0.2.4+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://rrwick.github.io/Porechop Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/porechop Vcs-Git: https://salsa.debian.org/med-team/porechop.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, libseqan2-dev (= 2.5.0~rc3+dfsg-1), python3-dev, python3-setuptools Package-List: porechop deb science optional arch=any Checksums-Sha1: ca42641ad185404433d21282554185aa184bf437 726312 porechop_0.2.4+dfsg.orig.tar.xz 4377cc7a1a607ff5e65d21a0aa6313a244532965 7108 porechop_0.2.4+dfsg-7.debian.tar.xz Checksums-Sha256: 6d018c3c39777b36697cb1182ecaac9f981ee78c3660347fb83e52351cd79a2c 726312 porechop_0.2.4+dfsg.orig.tar.xz 6e53cecf27f4bc5ef3533664e7006cdab86073060164c734a1217def2bdc9a22 7108 porechop_0.2.4+dfsg-7.debian.tar.xz Files: a09d363d707181eb1013200716142ad7 726312 porechop_0.2.4+dfsg.orig.tar.xz 78e20a57be30a10991db9b642cc869cd 7108 porechop_0.2.4+dfsg-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdHRmUACgkQPCZ2P2xn 5uKZ/xAAltuS3aOGEcH+2aKvYwqrpXMc/Acz1SXeJkpaT3guQTcEL5K+XTYw4OVg AHFcTKJd63o2tZkgaC0nMuxg4gFcUEMpWLLklKLXga8uZ8QsTQnBT89M5frpYq2y WEzppymBdyOUIvattO+yhTfKSMv+h5YF3GFXEuFr2l3jb2+NCHfs3+gFrxZ3eVQf ickIkZBZFFNpIbVqiTr2Ut/OD96+BbrEzBrh7IZukLCjvXTnVvRjNFdOI8cDE8ey z5si5qfXdxJ6qrbaV1KS1TqzI9n7YmMnLnJvH8kq+OvWWD5ErOBG8NwMOyk49ps4 36oWX8tm6M91bjdbT4Xlch35ev7orS9+Pc+mbXjoUU/jf6Qp9o7P8WHYSPQmvKO1 yOs6iG6Ag6voaXna/eMekYyoU4qkP/SxWBDVMn+riVRORSDRAQR9uLvIK+UWyBxi As1cay8kkmM2bV0xAs7k4CVHxXl0K/d1FMpSxKfAlgTpnrfJ5ANJCegfgBxQCaFn vwHDy7W04RlURv6C6avh2Dg1OwefP18lfcnfzZFK0IzWC3cCJ1yWT16wL20mbz9c jTSrE81nxXEAm8m7Tjy7ph4vYbU+goZxm00aF64C8alpW6xOE01vbLNgpidqIt+b HyvoBTSEhwcwd01CCEz/tLRqqyB7SyD3E1hsDnwtU7RjC3izlo4= =pw5r -----END PGP SIGNATURE----- Wed Nov 27 23:20:27 UTC 2024 I: Checking whether the package is not for us Wed Nov 27 23:20:27 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Wed Nov 27 23:20:27 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Wed Nov 27 23:21:55 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 27 11:20:30 -12 2024 I: pbuilder-time-stamp: 1732749630 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [porechop_0.2.4+dfsg-7.dsc] I: copying [./porechop_0.2.4+dfsg.orig.tar.xz] I: copying [./porechop_0.2.4+dfsg-7.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 27 16:18:45 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./porechop_0.2.4+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting porechop in porechop-0.2.4+dfsg dpkg-source: info: unpacking porechop_0.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking porechop_0.2.4+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_python_interpreter_line.patch dpkg-source: info: applying no_soname.patch dpkg-source: info: applying define-all-attribute-in-clean.patch dpkg-source: info: applying 0004-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18953/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9861d30391af420490b3656f3389a186' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='18953' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Mtva7fwo/pbuilderrc_eYqm --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Mtva7fwo/b1 --logfile b1/build.log porechop_0.2.4+dfsg-7.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/18953/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libseqan2-dev (= 2.5.0~rc3+dfsg-1), python3-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19957 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 38.3 MB of archives. After unpacking 146 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libseqan2-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.2.0-1 [731 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.6.4-1 [165 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libpython3.12t64 i386 3.12.7-3 [2170 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libpython3.12-dev i386 3.12.7-3 [5282 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.12.7-1 [9988 B] Get: 72 http://deb.debian.org/debian experimental/main i386 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 python3.12-dev i386 3.12.7-3 [505 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 python3-dev i386 3.12.7-1 [26.1 kB] Fetched 39.5 MB in 1s (72.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19957 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20277 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_i386.deb ... 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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_i386.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:i386. 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Unpacking libpython3.12-dev:i386 (3.12.7-3) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../49-libpython3-dev_3.12.7-1_i386.deb ... Unpacking libpython3-dev:i386 (3.12.7-1) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../50-libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb ... Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../51-python3.12-dev_3.12.7-3_i386.deb ... Unpacking python3.12-dev (3.12.7-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../52-python3-dev_3.12.7-1_i386.deb ... Unpacking python3-dev (3.12.7-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Nov 27 23:21:12 UTC 2024. Universal Time is now: Wed Nov 27 23:21:12 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:i386 (2.6.4-1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:i386 (3.12.7-3) ... Setting up libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:i386 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3.12-dev (3.12.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:i386 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/porechop-0.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../porechop_0.2.4+dfsg-7_source.changes dpkg-buildpackage: info: source package porechop dpkg-buildpackage: info: source version 0.2.4+dfsg-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean Deleting directory: /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_clean # Removing left .so files. find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop copying porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop copying porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop copying porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop copying porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop copying porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop copying porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop copying porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/adapter_align.o porechop/src/alignment.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/adapter_align.o porechop/src/alignment.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/porechop/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/adapter_align.o porechop/src/alignment.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/adapter_align.o porechop/src/alignment.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' running install_lib creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.12/build/porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop/cpp_function_wrappers.py to cpp_function_wrappers.cpython-312.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop/nanopore_read.py to nanopore_read.cpython-312.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop/porechop.py to porechop.cpython-312.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop/adapters.py to adapters.cpython-312.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop/misc.py to misc.cpython-312.pyc /usr/lib/python3.12/dist-packages/porechop/misc.py:261: SyntaxWarning: invalid escape sequence '\[' byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop/version.py to version.cpython-312.pyc running install_egg_info running egg_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop.egg-info/dependency_links.txt writing entry points to porechop.egg-info/entry_points.txt writing top-level names to porechop.egg-info/top_level.txt writing manifest file 'porechop.egg-info/SOURCES.txt' reading manifest file 'porechop.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'porechop.egg-info/SOURCES.txt' Copying porechop.egg-info to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.12/dist-packages/porechop-0.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing porechop script to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_install mv -v debian/porechop/usr/bin/porechop-runner.py debian/porechop/usr/bin/porechop renamed 'debian/porechop/usr/bin/porechop-runner.py' -> 'debian/porechop/usr/bin/porechop' make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_python3 --no-ext-rename I: dh_python3 tools:113: replacing shebang in debian/porechop/usr/bin/porechop make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'porechop-dbgsym' in '../porechop-dbgsym_0.2.4+dfsg-7_i386.deb'. dpkg-deb: building package 'porechop' in '../porechop_0.2.4+dfsg-7_i386.deb'. dpkg-genbuildinfo --build=binary -O../porechop_0.2.4+dfsg-7_i386.buildinfo dpkg-genchanges --build=binary -O../porechop_0.2.4+dfsg-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18953 and its subdirectories I: Current time: Wed Nov 27 11:21:54 -12 2024 I: pbuilder-time-stamp: 1732749714 Wed Nov 27 23:21:56 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom08-i386.debian.net. Wed Nov 27 23:21:56 UTC 2024 I: Preparing to do remote build '2' on infom08-i386.debian.net. Wed Nov 27 23:22:41 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. Wed Nov 27 23:22:42 UTC 2024 I: porechop_0.2.4+dfsg-7_i386.changes: Format: 1.8 Date: Wed, 27 Nov 2024 14:52:55 +0100 Source: porechop Binary: porechop porechop-dbgsym Architecture: i386 Version: 0.2.4+dfsg-7 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Enrico Seiler Description: porechop - adapter trimmer for Oxford Nanopore reads Changes: porechop (0.2.4+dfsg-7) experimental; urgency=medium . [ Enrico Seiler ] * Team upload. * d/control: Experimental rebuild using the 3rd release candidate of SeqAn 2.5.0 * Added patch for the explicit seqan2 namespace. . [ Michael R. Crusoe ] * Added patch for CPPFLAGS & LDFLAGS Checksums-Sha1: 4aa5672ba52cd2c6508410c793999465a1b5c18c 389884 porechop-dbgsym_0.2.4+dfsg-7_i386.deb 27df55867997c519d83e010d996708700e562601 6506 porechop_0.2.4+dfsg-7_i386.buildinfo fe0972942f446ea83e89b99edb59c93879b999bd 58776 porechop_0.2.4+dfsg-7_i386.deb Checksums-Sha256: 169dd8a77def00d98731dc4056bae1c080c55518d99e1a207a17e8430c15c4cf 389884 porechop-dbgsym_0.2.4+dfsg-7_i386.deb b124c1cbf2a68184cb726b96444140ea52d01c50eb5cac7c50cf94daa010da02 6506 porechop_0.2.4+dfsg-7_i386.buildinfo 292c1d9ca700a09ea5265d7e029b5848f78e4c43b00388e32a176bc3d7961597 58776 porechop_0.2.4+dfsg-7_i386.deb Files: 349ffdbbd7bd6f20f95a0c7ce7c63a63 389884 debug optional porechop-dbgsym_0.2.4+dfsg-7_i386.deb 584bb073212f895321c7081be4f1f408 6506 science optional porechop_0.2.4+dfsg-7_i386.buildinfo 123f3c5ba427201e0054e5d745d273b7 58776 science optional porechop_0.2.4+dfsg-7_i386.deb Wed Nov 27 23:22:43 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_13-52547.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Mtva7fwo/porechop_0.2.4+dfsg-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Mtva7fwo/porechop_0.2.4+dfsg-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Mtva7fwo/porechop_0.2.4+dfsg-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Mtva7fwo/b1/porechop_0.2.4+dfsg-7_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.Mtva7fwo/b2/porechop_0.2.4+dfsg-7_i386.changes ## close_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 5.688s) 2.600s 57 calls diff 1.548s 88 calls objdump 0.782s 427 calls readelf 0.522s 2 calls objcopy 0.231s 18 calls xz 0.003s 11 calls strings 0.002s 19 calls cmp (internal) ## compare_files (cumulative) (total time: 31.263s) 5.903s 1 call abc.DotChangesFile 5.862s 2 calls abc.DebFile 5.696s 4 calls abc.XzFile 5.229s 2 calls abc.DebDataTarFile 4.980s 1 call abc.ElfFile 2.927s 5 calls diffoscope.comparators.elf.ElfCodeSection 0.321s 2 calls abc.TarFile 0.262s 12 calls diffoscope.comparators.elf.ElfSection 0.047s 2 calls abc.Md5sumsFile 0.019s 1 call abc.TextFile 0.015s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 0.326s) 0.234s 18 calls diffoscope.comparators.xz.XzContainer 0.036s 22 calls diffoscope.comparators.deb.DebContainer 0.033s 20 calls diffoscope.comparators.tar.TarContainer 0.023s 38 calls diffoscope.comparators.deb.DebTarContainer ## diff (total time: 1.049s) 1.049s 340 calls linediff ## has_same_content_as (total time: 0.004s) 0.001s 6 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.001s 4 calls abc.XzFile 0.001s 2 calls abc.DebDataTarFile 0.000s 2 calls abc.TarFile 0.000s 2 calls abc.DebFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.ElfFile 0.000s 12 calls diffoscope.comparators.elf.ElfSection 0.000s 5 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 16.833s) 16.832s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 10.445s) 10.346s 1 call html 0.069s 1 call text 0.030s 1 call json ## recognizes (total time: 0.612s) 0.412s 1674 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.148s 780 calls diffoscope.comparators.utils.archive.ArchiveMember 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile 0.026s 216 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.255s) 0.255s 41 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 17.264s CPU time consumed: 16.294s Wed Nov 27 23:23:01 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Wed Nov 27 23:23:01 UTC 2024 E: porechop failed to build reproducibly in experimental on i386. Wed Nov 27 23:23:03 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Nov 27 23:23:03 UTC 2024 I: Submitting 8.0K b1/porechop_0.2.4+dfsg-7_i386.buildinfo.asc Wed Nov 27 23:23:04 UTC 2024 I: Submitting 8.0K b2/porechop_0.2.4+dfsg-7_i386.buildinfo.asc Wed Nov 27 23:23:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Nov 27 23:23:04 UTC 2024 I: Done submitting .buildinfo files. Wed Nov 27 23:23:04 UTC 2024 I: Removing signed porechop_0.2.4+dfsg-7_i386.buildinfo.asc files: removed './b1/porechop_0.2.4+dfsg-7_i386.buildinfo.asc' removed './b2/porechop_0.2.4+dfsg-7_i386.buildinfo.asc'