Tue Nov 19 19:26:32 UTC 2024 I: starting to build macromoleculebuilder/experimental/i386 on jenkins on '2024-11-19 19:26' Tue Nov 19 19:26:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/45167/console.log Tue Nov 19 19:26:32 UTC 2024 I: Downloading source for experimental/macromoleculebuilder=4.0.0+dfsg-3.1~exp1 --2024-11-19 19:26:32-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/macromoleculebuilder/macromoleculebuilder_4.0.0%2bdfsg-3.1%7eexp1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2473 (2.4K) [text/prs.lines.tag] Saving to: ‘macromoleculebuilder_4.0.0+dfsg-3.1~exp1.dsc’ 0K .. 100% 362M=0s 2024-11-19 19:26:32 (362 MB/s) - ‘macromoleculebuilder_4.0.0+dfsg-3.1~exp1.dsc’ saved [2473/2473] Tue Nov 19 19:26:32 UTC 2024 I: macromoleculebuilder_4.0.0+dfsg-3.1~exp1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macromoleculebuilder Binary: libmmb-dev, libmmb4.0t64, mmb, mmb-common Architecture: any all Version: 4.0.0+dfsg-3.1~exp1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/rnatoolbox Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/macromoleculebuilder Vcs-Git: https://salsa.debian.org/debichem-team/macromoleculebuilder.git Build-Depends: asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev Package-List: libmmb-dev deb libdevel optional arch=any libmmb4.0t64 deb libs optional arch=any mmb deb science optional arch=any mmb-common deb science optional arch=all Checksums-Sha1: c37eccceb961f3e78d5b7145faf79ce425cf104e 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz 7c09bb539e9f08e290cdedf488acb3f32078a7ae 5692 macromoleculebuilder_4.0.0+dfsg-3.1~exp1.debian.tar.xz Checksums-Sha256: 2f50d11c886c36fd18476f942d7521536ded599584e0d83462a63ba5f9ccc449 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz fdb671e8cf827752a40b968c877d51453c110e50c62342b7930a187d01ec919a 5692 macromoleculebuilder_4.0.0+dfsg-3.1~exp1.debian.tar.xz Files: 951370d06adf03fb858edccdee43c075 2567256 macromoleculebuilder_4.0.0+dfsg.orig.tar.xz de37baeffecf0808e4dae5bb4a355683 5692 macromoleculebuilder_4.0.0+dfsg-3.1~exp1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmW9HyQSHGdpbmdnc0Bk ZWJpYW4ub3JnAAoJEK/P7I5mnOHCOHEP/j2xYNysUWEQFBQb79xWO59iaqla5K1W jmY3DlMeuT0JnkuENbX1ZwDvTblo1gZv3kk1P4s3lIdGQ2uKINJn58fWe4LgnIIa WC5q2HEf7dVXqLkcGwp06vDbaU2b02cn2RRXd5qfUAlBMQt7RW7kx7Q/ow8FdtAF T0hA6AnV7DbCFU5ipdbBktnfACWxr+RKs80di/rZ+I7rVP9JZBL4M37jOi4ZkbBy G6TpTkjJWHh2LQQkCpE1uP0RVxM6x7l+lGcqmSauGGdnW15Q7zKOhGCy600a/GJB 8Y3BqO0JtOD8yXgohSRp7Z28UEg8QCOrkdPRU2SrIFPsvuwYAwNannr/mNb5zJ4M hlM1iqPlYo+U+kL7sgwkuThTE179tMdzhe3qJGRzOs0BjoW2PmZOoQVd/sltztAQ p0nPNMrJb+TbuoKP5YCq2sOdxC6RQhUbUcbiU+1mBqtbK93vJCWwFTSdOKr/cbEf ueJc2hRWkMe7sHU7gSxCnQ5O7iVNofJn2j+/tu/uxijGmdNVy5vDY/0teSzMogkc zZ+/2EG49BKycQnw6Ph08vm0WynSbR3T3X6zaC2KB5/OAj9ullQRyyQGJsN6eRqe eoMLANZTkm16ebGMuhbXSyib0JITJP3alqjj0KodIZWNAq65hWoJV6qgQ5eSJv7T VkddMX5u0ZUI =WA+B -----END PGP SIGNATURE----- Tue Nov 19 19:26:32 UTC 2024 I: Checking whether the package is not for us Tue Nov 19 19:26:32 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue Nov 19 19:26:32 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue Nov 19 19:26:53 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 22 13:49:32 -12 2025 I: pbuilder-time-stamp: 1766454572 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [macromoleculebuilder_4.0.0+dfsg-3.1~exp1.dsc] I: copying [./macromoleculebuilder_4.0.0+dfsg.orig.tar.xz] I: copying [./macromoleculebuilder_4.0.0+dfsg-3.1~exp1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Feb 2 16:58:12 2024 gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: issuer "ginggs@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./macromoleculebuilder_4.0.0+dfsg-3.1~exp1.dsc: no acceptable signature found dpkg-source: info: extracting macromoleculebuilder in macromoleculebuilder-4.0.0+dfsg dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking macromoleculebuilder_4.0.0+dfsg-3.1~exp1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch dpkg-source: info: applying 96da444290ab1af4385013c566079d381d8051b4.patch dpkg-source: info: applying bf1ab1ebf49bb9e48f4f133e155f9315cc37079d.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/45778/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='fddf184aee1b40c38921b7e602cb57bb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='45778' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h8qPP2aX/pbuilderrc_Bbpk --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h8qPP2aX/b1 --logfile b1/build.log macromoleculebuilder_4.0.0+dfsg-3.1~exp1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/45778/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on asciidoc-base; however: Package asciidoc-base is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on docbook-xml; however: Package docbook-xml is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev (>= 0.6.2+ds-2); however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-dev; however: Package libopenmm-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimbody-dev; however: Package libsimbody-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-dev (>= 3.1.0); however: Package libsimtkmolmodel-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimtkmolmodel-plugins; however: Package libsimtkmolmodel-plugins is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas-dev{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libopengl-dev{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1t64{a} libstb-dev{a} libstb0t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} tao-pegtl-dev{a} tzdata{a} uuid-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix wget xmlto 0 packages upgraded, 171 newly installed, 0 to remove and 0 not upgraded. Need to get 123 MB of archives. After unpacking 517 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libopenmm-dev which is a virtual package and is not provided by any available package Depends: libsimtkmolmodel-dev (>= 3.1.0) which is a virtual package and is not provided by any available package Depends: libsimtkmolmodel-plugins which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: asciidoc-base{a} asciidoc-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docbook-xml{a} docbook-xsl{a} dwz{a} file{a} freeglut3-dev{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas-dev{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libice-dev{a} libice6{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libopengl-dev{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsimbody-dev{a} libsimbody3.7{a} libsm-dev{a} libsm6{a} libssh2-1t64{a} libstb-dev{a} libstb0t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxml2-utils{a} libxmu-dev{a} libxmu-headers{a} libxmu6{a} libxshmfence1{a} libxslt1.1{a} libxt-dev{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sgml-data{a} tao-pegtl-dev{a} tzdata{a} uuid-dev{a} x11-common{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xsltproc{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix wget xmlto 0 packages upgraded, 171 newly installed, 0 to remove and 0 not upgraded. Need to get 123 MB of archives. After unpacking 517 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/45778 and its subdirectories Tue Nov 19 19:26:54 UTC 2024 W: No second build log, what happened? Tue Nov 19 19:26:54 UTC 2024 W: Downloading the build dependencies failed Tue Nov 19 19:26:54 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Tue Nov 19 19:26:54 UTC 2024 W: Network problems are automatically rescheduled after some hours.