Fri Nov 29 04:35:12 UTC 2024 I: starting to build flexbar/experimental/armhf on jenkins on '2024-11-29 04:34' Fri Nov 29 04:35:12 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_14/7699/console.log Fri Nov 29 04:35:12 UTC 2024 I: Downloading source for experimental/flexbar=1:3.5.0-6 --2024-11-29 04:35:12-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/flexbar/flexbar_3.5.0-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2037 (2.0K) [text/prs.lines.tag] Saving to: ‘flexbar_3.5.0-6.dsc’ 0K . 100% 321M=0s 2024-11-29 04:35:12 (321 MB/s) - ‘flexbar_3.5.0-6.dsc’ saved [2037/2037] Fri Nov 29 04:35:12 UTC 2024 I: flexbar_3.5.0-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: flexbar Binary: flexbar Architecture: any Version: 1:3.5.0-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Tony Travis Homepage: https://github.com/seqan/flexbar Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/flexbar Vcs-Git: https://salsa.debian.org/med-team/flexbar.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev (= 2.5.0~rc3+dfsg-1), zlib1g-dev, libbz2-dev Package-List: flexbar deb science optional arch=any Checksums-Sha1: 0c43550b73a08effdd3a7965e916dc9c6b64f8b2 44021 flexbar_3.5.0.orig.tar.gz b1ba8b8dd46d4251f25ac7f2c8747aadb0d08613 14468 flexbar_3.5.0-6.debian.tar.xz Checksums-Sha256: 656168934b6cb367ee6d4adad0c40506bc107c888d129fe191c6f3f3446a4ac9 44021 flexbar_3.5.0.orig.tar.gz 494d9a81d195d894e43189da7c749a709a0ca82dd73571451823d779fc30d5a2 14468 flexbar_3.5.0-6.debian.tar.xz Files: 0e07bf4afebfd731c4718b401383224a 44021 flexbar_3.5.0.orig.tar.gz a9e63945096699faf95aeafef7da32a7 14468 flexbar_3.5.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdF6v0ACgkQPCZ2P2xn 5uKaNA/8Do4W5drn3xRY1JhVK3oTt3JNcjMki/730nhMh+r5xyvxtS4pixl/L38X o04eWkNG+W66KrSoeTsaFMNUQCHCWJFB+9yOyReMeTC/IfEHi+xj1GUgO0wpyRca g5vvQkeyvRxUjDDEU2rCSPt6iL1bGSeqVTNvPtGdHT0Wu1+JEEuRdwncAGbhVQY0 ZLR6Js9TIGIqAWQBEGQDzHS/vDuhV0ICTwt+kdMqHaKilLiEE0sC2kwHvvedafnP qjVqiQHtP72aICPufBxNeAJS6p+Vvwf/+qfg6sh2GSejrfKgng9sTzgUqXAYw2S9 hPpSUewagus+k3+01HFGFu0CZZPx08C2N3JnxDLBR1S1Zj5P7WdLOgYC1fyzofiU Ijo5EZ2FyKT3Q0MFdmhmLHtwV+AV/Y3vhcaFwuaXBSGFa7mEIPck4mJl9Mc+c1HD BDVJSmra9POd8csOlr/VDw67Yx1f/VLVgZFLP1yjtvAaySDMsyCzrjY6c9EfAeLv unWOUpIAxxJOMYB/kENJHoAicUVjVpGjAoiNN9oFLNPJmtaLlHGtdPGYFugRPSSa YSz7IzftP+tlzqF/PZks1FgTyGW2QWN7oIjyDN2YeiQUM95CZXzcQ4G7LbA6E7dY 1VUQTBA54rGzMJdSqlyLveSrns3vwqvPTCN5jvp4cRE2qS9he9g= =2WN7 -----END PGP SIGNATURE----- Fri Nov 29 04:35:12 UTC 2024 I: Checking whether the package is not for us Fri Nov 29 04:35:12 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Fri Nov 29 04:35:12 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Fri Nov 29 04:39:02 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 28 16:35:18 -12 2024 I: pbuilder-time-stamp: 1732854918 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [flexbar_3.5.0-6.dsc] I: copying [./flexbar_3.5.0.orig.tar.gz] I: copying [./flexbar_3.5.0-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 26 15:36:29 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./flexbar_3.5.0-6.dsc: no acceptable signature found dpkg-source: info: extracting flexbar in flexbar-3.5.0 dpkg-source: info: unpacking flexbar_3.5.0.orig.tar.gz dpkg-source: info: unpacking flexbar_3.5.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_march_native.patch dpkg-source: info: applying 195a1ab2c2715b07df5acff58dc2a0396d9cd52d.patch dpkg-source: info: applying 1c872fa10d474f090633fc95d409aa60607a3f96.patch dpkg-source: info: applying 19722f2743c96235ff57948eda82f963cf734131.patch dpkg-source: info: applying a9b0eb87a391aeaf760f8116dca777749c8b4f96.patch dpkg-source: info: applying 0006-Upgrade-to-SeqAn-2.5.0.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22571/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='18d45a3c189845cba48e98b6d418b796' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22571' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kP5MGpUL/pbuilderrc_bKDX --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kP5MGpUL/b1 --logfile b1/build.log flexbar_3.5.0-6.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/22571/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev (= 2.5.0~rc3+dfsg-1), zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libtbb-dev; however: Package libtbb-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhwloc15{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libssl3 linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 31.9 MB of archives. After unpacking 118 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhwloc15{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libssl3 linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-6 [864 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.31.1-1 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.11.0-1 [303 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.31.1-1 [5747 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libhwloc15 armhf 2.11.2-1 [134 kB] Get: 56 http://deb.debian.org/debian experimental/main armhf libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libtbbmalloc2 armhf 2021.12.0-1 [42.4 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libtbbbind-2-5 armhf 2021.12.0-1 [13.0 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libtbb12 armhf 2021.12.0-1 [74.1 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libtbb-dev armhf 2021.12.0-1 [193 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Fetched 33.1 MB in 0s (75.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_armhf.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/flexbar-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../flexbar_3.5.0-6_source.changes dpkg-buildpackage: info: source package flexbar dpkg-buildpackage: info: source version 1:3.5.0-6 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/flexbar-3.5.0' dh_auto_clean rm -f test/result_*fast[aq] test/result_*.log make[1]: Leaving directory '/build/reproducible-path/flexbar-3.5.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Performing Test COMPILER_SUPPORTS_CXX17 -- Performing Test COMPILER_SUPPORTS_CXX17 - Success -- Flexbar 32 bit architecture -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3.1") -- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Configuring done (2.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/flexbar-3.5.0 -B/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/depend make[3]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/flexbar-3.5.0 /build/reproducible-path/flexbar-3.5.0/src /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf/src /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/build make[3]: Entering directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' [ 50%] Building CXX object src/CMakeFiles/flexbar.dir/Flexbar.cpp.o cd /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -I/build/reproducible-path/flexbar-3.5.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/flexbar-3.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -MD -MT src/CMakeFiles/flexbar.dir/Flexbar.cpp.o -MF CMakeFiles/flexbar.dir/Flexbar.cpp.o.d -o CMakeFiles/flexbar.dir/Flexbar.cpp.o -c /build/reproducible-path/flexbar-3.5.0/src/Flexbar.cpp [100%] Linking CXX executable ../flexbar cd /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/flexbar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/flexbar-3.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/flexbar.dir/link.d CMakeFiles/flexbar.dir/Flexbar.cpp.o -o ../flexbar -lpthread /usr/lib/arm-linux-gnueabihf/libtbb.so.12.12 -lz -lbz2 make[3]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' [100%] Built target flexbar make[2]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/flexbar-3.5.0' cd test ; \ export PATH="/build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf:$PATH" ; \ echo $PATH ; \ export HOME=/tmp ; \ which flexbar ; \ ./flexbar_test.sh /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games /build/reproducible-path/flexbar-3.5.0/obj-arm-linux-gnueabihf/flexbar Testing fasta: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing fastq: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing decompression: Test gzip OK Test bzip2 OK rm -f test/result_*fast[aq] test/result_*.log make[1]: Leaving directory '/build/reproducible-path/flexbar-3.5.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/flexbar/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/flexbar/usr/bin/flexbar contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'flexbar-dbgsym' in '../flexbar-dbgsym_3.5.0-6_armhf.deb'. dpkg-deb: building package 'flexbar' in '../flexbar_3.5.0-6_armhf.deb'. dpkg-genbuildinfo --build=binary -O../flexbar_3.5.0-6_armhf.buildinfo dpkg-genchanges --build=binary -O../flexbar_3.5.0-6_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22571 and its subdirectories I: Current time: Thu Nov 28 16:38:35 -12 2024 I: pbuilder-time-stamp: 1732855115 Fri Nov 29 04:39:06 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net. Fri Nov 29 04:39:06 UTC 2024 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net. Fri Nov 29 05:13:27 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. Fri Nov 29 05:13:30 UTC 2024 I: flexbar_3.5.0-6_armhf.changes: Format: 1.8 Date: Tue, 26 Nov 2024 16:04:46 +0100 Source: flexbar Binary: flexbar flexbar-dbgsym Architecture: armhf Version: 1:3.5.0-6 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Enrico Seiler Description: flexbar - flexible barcode and adapter removal for sequencing platforms Changes: flexbar (1:3.5.0-6) experimental; urgency=medium . * Team upload. * d/control: Experimental rebuild using the 3rd release candidate of SeqAn 2.5.0 * Added patch for the explicit seqan2 namespace. * salsa ci: allow reprotest to fail Checksums-Sha1: cb9d232236760fb40788cae5893bf5234f72aa9a 4188584 flexbar-dbgsym_3.5.0-6_armhf.deb 88a097697cbd980edfcfb11749bb9571e6ea87cc 6101 flexbar_3.5.0-6_armhf.buildinfo d7d9ff353057298534794b91b4b3c4a51cce9d48 333852 flexbar_3.5.0-6_armhf.deb Checksums-Sha256: b6cfa0d8e42fb50ed1f909b0dc84d9bbffa206efb26cb63cf48aac4661bbe1bd 4188584 flexbar-dbgsym_3.5.0-6_armhf.deb e226bd05199199d40331fa0537bf3bae0aa16ca06bcb4fb380dbc663eed15628 6101 flexbar_3.5.0-6_armhf.buildinfo 2e8d3194adab25838d1ee25b1bba0f58c4761adddbebdfbc5b0d091a3ac55347 333852 flexbar_3.5.0-6_armhf.deb Files: 40271c2f83c2d8c8ed93e2cca32989f1 4188584 debug optional flexbar-dbgsym_3.5.0-6_armhf.deb 94574668e58f5b7a4f2fc802c63b5a5a 6101 science optional flexbar_3.5.0-6_armhf.buildinfo 0f79b0d7ef82bb70e36c322d03519e05 333852 science optional flexbar_3.5.0-6_armhf.deb Fri Nov 29 05:13:31 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_14-7699.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.kP5MGpUL/flexbar_3.5.0-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.kP5MGpUL/flexbar_3.5.0-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.kP5MGpUL/flexbar_3.5.0-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.kP5MGpUL/b1/flexbar_3.5.0-6_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.kP5MGpUL/b2/flexbar_3.5.0-6_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.373s) 0.373s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.054s) 0.054s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 687ms CPU time consumed: 685ms Fri Nov 29 05:14:52 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 29 05:14:52 UTC 2024 I: flexbar from experimental built successfully and reproducibly on armhf. Fri Nov 29 05:14:54 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 29 05:14:54 UTC 2024 I: Submitting 8.0K b1/flexbar_3.5.0-6_armhf.buildinfo.asc Fri Nov 29 05:15:01 UTC 2024 I: Submitting 8.0K b2/flexbar_3.5.0-6_armhf.buildinfo.asc Fri Nov 29 05:15:09 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 29 05:15:09 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 29 05:15:09 UTC 2024 I: Removing signed flexbar_3.5.0-6_armhf.buildinfo.asc files: removed './b1/flexbar_3.5.0-6_armhf.buildinfo.asc' removed './b2/flexbar_3.5.0-6_armhf.buildinfo.asc'