Sun Dec 15 20:35:43 UTC 2024 I: starting to build r-bioc-isoformswitchanalyzer/experimental/amd64 on jenkins on '2024-12-15 20:35' Sun Dec 15 20:35:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_11/38923/console.log Sun Dec 15 20:35:43 UTC 2024 I: Downloading source for experimental/r-bioc-isoformswitchanalyzer=2.6.0+ds-1 --2024-12-15 20:35:43-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-isoformswitchanalyzer/r-bioc-isoformswitchanalyzer_2.6.0%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2902 (2.8K) [text/prs.lines.tag] Saving to: ‘r-bioc-isoformswitchanalyzer_2.6.0+ds-1.dsc’ 0K .. 100% 398M=0s 2024-12-15 20:35:43 (398 MB/s) - ‘r-bioc-isoformswitchanalyzer_2.6.0+ds-1.dsc’ saved [2902/2902] Sun Dec 15 20:35:43 UTC 2024 I: r-bioc-isoformswitchanalyzer_2.6.0+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-isoformswitchanalyzer Binary: r-bioc-isoformswitchanalyzer Architecture: any Version: 2.6.0+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/IsoformSwitchAnalyzeR/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-bioc-dexseq, r-bioc-saturn, r-bioc-sva, r-cran-ggplot2 (>= 3.3.5), r-bioc-pfamanalyzer, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings, r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport, r-bioc-tximeta, r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase, r-bioc-summarizedexperiment, r-cran-tidyr, r-bioc-s4vectors, r-bioc-biocparallel, r-bioc-pwalign, architecture-is-64-bit Package-List: r-bioc-isoformswitchanalyzer deb gnu-r optional arch=any Checksums-Sha1: 673a87e9712a73cf553f2535bc64aa99a7a45b99 3121772 r-bioc-isoformswitchanalyzer_2.6.0+ds.orig.tar.xz c4e318eb53db2c0ce16f45c75aa2cdf4548737d4 3320 r-bioc-isoformswitchanalyzer_2.6.0+ds-1.debian.tar.xz Checksums-Sha256: 3390d211b25f001b32650cc0a5f2887f00adaee34121416bef41f4b7ac5ae1b0 3121772 r-bioc-isoformswitchanalyzer_2.6.0+ds.orig.tar.xz a6fb5da7c0e6b5e0d3a1a4dc3e05042db8495774a411ded136bd6ed7a30c01e8 3320 r-bioc-isoformswitchanalyzer_2.6.0+ds-1.debian.tar.xz Files: ce530ee6d92a0ac24177487f6768cf48 3121772 r-bioc-isoformswitchanalyzer_2.6.0+ds.orig.tar.xz 3b4a885a255c1e42f809e4c7a1e0296b 3320 r-bioc-isoformswitchanalyzer_2.6.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdPQQ8SHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+bi4PEQAMNh12acM5GE4ManeLCxyHVU2eAXXTh0 f0rpI0k6hyta4ijrKLO65hBalRcQYjNsLReWMyVBvRPaeMfdgf8wSOvtGKX0ry0q 0cxN7c90Q1Zz3UeSQHi3qbuDL0tZJ+7NDqAorUVS6F5fsPdmQv59R94YRPvjZj6k 0qCCRdLs4INK0RAYC0wn2TBkdvOIc1EG6tPnU/v4T+XzpWemhW2kGWp3du4f97Ma YwopMLdHkO/H2JfT4zp9HnybeiqXnOIhb/jXYJjuvuh3+FZK4IvFBJ182O5/P9ym 9NU85abkUeHc1/BA6BsAvxWQpWob0AMQWgrH+PhY2W+e21RHX4jwVa32q9koRSqH eXqeAsVALUgWVVQ2UFpMbh1a1eCvMLmI0q2JU4TcNdxkaSZsxIfOO1J0NPTzhMrq anLofhGn6fFJ31ECrsjctN51R+bQDIG9JD+eoiGsx6w8w86HuNWVD1/fGFstDEdk TpRgX8MnMI0syBzLtS51ySP9D0Nzpw2AYF2c6oDRSBsWjMhOGH5q/iSe4Nvsn5m9 MH3aQX7gQHcL9Xnvmh/d2pPz0QRzzIZSYCzlwy3y913YtL5y4oIy/utG8eWOutkJ OZcQIAyJaeeOAiWkS+uQtmWm+Sb+sSSV1QYoMhunOaMAvHC2ONJzjyJOohUyu2wg wiNRQRXq133L =KmGZ -----END PGP SIGNATURE----- Sun Dec 15 20:35:43 UTC 2024 I: Checking whether the package is not for us Sun Dec 15 20:35:43 UTC 2024 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sun Dec 15 20:35:43 UTC 2024 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sun Dec 15 20:39:48 UTC 2024 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 15 08:35:45 -12 2024 I: pbuilder-time-stamp: 1734294945 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-isoformswitchanalyzer_2.6.0+ds-1.dsc] I: copying [./r-bioc-isoformswitchanalyzer_2.6.0+ds.orig.tar.xz] I: copying [./r-bioc-isoformswitchanalyzer_2.6.0+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 3 17:34:07 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-isoformswitchanalyzer_2.6.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-isoformswitchanalyzer in r-bioc-isoformswitchanalyzer-2.6.0+ds dpkg-source: info: unpacking r-bioc-isoformswitchanalyzer_2.6.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-isoformswitchanalyzer_2.6.0+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/879447/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='8535bc31623146a0ab8b914a1bcd1f4f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='879447' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EYfGJnLL/pbuilderrc_SPLP --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EYfGJnLL/b1 --logfile b1/build.log r-bioc-isoformswitchanalyzer_2.6.0+ds-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/879447/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-bioc-dexseq, r-bioc-saturn, r-bioc-sva, r-cran-ggplot2 (>= 3.3.5), r-bioc-pfamanalyzer, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings, r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport, r-bioc-tximeta, r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase, r-bioc-summarizedexperiment, r-cran-tidyr, r-bioc-s4vectors, r-bioc-biocparallel, r-bioc-pwalign, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-limma; however: Package r-bioc-limma is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dexseq; however: Package r-bioc-dexseq is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-saturn; however: Package r-bioc-saturn is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sva; however: Package r-bioc-sva is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2 (>= 3.3.5); however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-pfamanalyzer; however: Package r-bioc-pfamanalyzer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-bsgenome; however: Package r-bioc-bsgenome is not installed. pbuilder-satisfydepends-dummy depends on r-cran-plyr; however: Package r-cran-plyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridextra; however: Package r-cran-gridextra is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-venndiagram; however: Package r-cran-venndiagram is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dbi; however: Package r-cran-dbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-tximport; however: Package r-bioc-tximport is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-tximeta; however: Package r-bioc-tximeta is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-edger; however: Package r-bioc-edger is not installed. pbuilder-satisfydepends-dummy depends on r-cran-futile.logger; however: Package r-cran-futile.logger is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stringr; however: Package r-cran-stringr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dplyr; however: Package r-cran-dplyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however: Package r-cran-magrittr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-readr; however: Package r-cran-readr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tibble; however: Package r-cran-tibble is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcurl; however: Package r-cran-rcurl is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tidyr; however: Package r-cran-tidyr is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-pwalign; however: Package r-bioc-pwalign is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} node-html5shiv{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-bsgenome{a} r-bioc-delayedarray{a} r-bioc-deseq2{a} r-bioc-dexseq{a} r-bioc-edger{a} r-bioc-genefilter{a} r-bioc-geneplotter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-pfamanalyzer{a} r-bioc-pwalign{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-saturn{a} r-bioc-sparsearray{a} r-bioc-summarizedexperiment{a} r-bioc-sva{a} r-bioc-tximport{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-boot{a} r-cran-cachem{a} r-cran-cli{a} r-cran-clipr{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-hms{a} r-cran-httr{a} r-cran-httr2{a} r-cran-hwriter{a} r-cran-isoband{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfdr{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-pbapply{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpparmadillo{a} r-cran-rcurl{a} r-cran-readr{a} r-cran-reshape2{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-scales{a} r-cran-snow{a} r-cran-statmod{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tzdb{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-venndiagram{a} r-cran-viridislite{a} r-cran-vroom{a} r-cran-withr{a} r-cran-xml{a} r-cran-xml2{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-base64enc r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-docopt r-cran-doparallel r-cran-foreach r-cran-formattable r-cran-fs r-cran-future r-cran-future.apply r-cran-gert r-cran-gh r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-promises r-cran-ps r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-rmariadb r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-runit r-cran-rvest r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webfakes r-cran-webutils r-cran-whoami r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 330 newly installed, 0 to remove and 0 not upgraded. Need to get 264 MB of archives. After unpacking 724 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-tximeta but it is not installable The following actions will resolve these dependencies: Install the following packages: 1) r-bioc-annotate [1.84.0+dfsg-1 (experimental)] 2) r-bioc-annotationdbi [1.68.0-1 (experimental)] 3) r-bioc-annotationfilter [1.30.0+dfsg-1 (experimental)] 4) r-bioc-annotationhub [3.14.0+dfsg-1 (experimental)] 5) r-bioc-biobase [2.66.0-1 (experimental)] 6) r-bioc-biocfilecache [2.14.0+dfsg-1 (experimental)] 7) r-bioc-biocgenerics [0.52.0-1 (experimental)] 8) r-bioc-biocio [1.16.0+dfsg-1 (experimental)] 9) r-bioc-biocparallel [1.40.0-1 (experimental)] 10) r-bioc-biocversion [3.20.0-1~0exp0 (experimental)] 11) r-bioc-biomart [2.62.0+dfsg-1 (experimental)] 12) r-bioc-biostrings [2.74.0+dfsg-1 (experimental)] 13) r-bioc-bsgenome [1.74.0-1 (experimental)] 14) r-bioc-delayedarray [0.32.0+dfsg-1 (experimental)] 15) r-bioc-deseq2 [1.46.0+dfsg-1 (experimental)] 16) r-bioc-dexseq [1.52.0+dfsg-1 (experimental)] 17) r-bioc-edger [4.4.1+dfsg-1 (experimental)] 18) r-bioc-ensembldb [2.30.0+dfsg-1 (experimental)] 19) r-bioc-genefilter [1.88.0-1 (experimental)] 20) r-bioc-geneplotter [1.84.0+dfsg-1 (experimental)] 21) r-bioc-genomeinfodb [1.42.1+dfsg-1 (experimental)] 22) r-bioc-genomicalignments [1.42.0-1 (experimental)] 23) r-bioc-genomicfeatures [1.58.0+dfsg-1 (experimental)] 24) r-bioc-genomicranges [1.58.0+dfsg-1 (experimental)] 25) r-bioc-iranges [2.40.0-1 (experimental)] 26) r-bioc-keggrest [1.46.0+dfsg-1 (experimental)] 27) r-bioc-limma [3.62.1+dfsg-1 (experimental)] 28) r-bioc-matrixgenerics [1.18.0-1 (experimental)] 29) r-bioc-pfamanalyzer [1.6.0+dfsg-1 (experimental)] 30) r-bioc-protgenerics [1.38.0-1 (experimental)] 31) r-bioc-pwalign [1.2.0-1 (experimental)] 32) r-bioc-rhtslib [3.2.0+dfsg-1 (experimental)] 33) r-bioc-rsamtools [2.22.0+dfsg-1 (experimental)] 34) r-bioc-rtracklayer [1.66.0-1 (experimental)] 35) r-bioc-s4arrays [1.6.0+dfsg-1 (experimental)] 36) r-bioc-s4vectors [0.44.0+dfsg-1 (experimental)] 37) r-bioc-saturn [1.14.0+dfsg-1 (experimental)] 38) r-bioc-sparsearray [1.6.0+dfsg-1 (experimental)] 39) r-bioc-summarizedexperiment [1.36.0+dfsg-1 (experimental)] 40) r-bioc-sva [3.54.0-1 (experimental)] 41) r-bioc-txdbmaker [1.2.1+ds-1 (experimental)] 42) r-bioc-tximeta [1.24.0+dfsg-1 (experimental)] 43) r-bioc-tximport [1.34.0+dfsg-1 (experimental)] 44) r-bioc-ucsc.utils [1.2.0+ds-1 (experimental)] 45) r-bioc-xvector [0.46.0-1 (experimental)] 46) r-bioc-zlibbioc [1.52.0+dfsg-1 (experimental)] 47) r-cran-biocmanager [1.30.25+dfsg-1 (unstable)] 48) r-cran-lazyeval [0.2.2-1+b1 (unstable)] The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} node-html5shiv{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-annotationfilter{a} r-bioc-annotationhub{a} r-bioc-biobase{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biocversion{a} r-bioc-biomart{a} r-bioc-biostrings{a} r-bioc-bsgenome{a} r-bioc-delayedarray{a} r-bioc-deseq2{a} r-bioc-dexseq{a} r-bioc-edger{a} r-bioc-ensembldb{a} r-bioc-genefilter{a} r-bioc-geneplotter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicfeatures{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-pfamanalyzer{a} r-bioc-protgenerics{a} r-bioc-pwalign{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-saturn{a} r-bioc-sparsearray{a} r-bioc-summarizedexperiment{a} r-bioc-sva{a} r-bioc-txdbmaker{a} r-bioc-tximeta{a} r-bioc-tximport{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-bh{a} r-cran-biocmanager{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-boot{a} r-cran-cachem{a} r-cran-cli{a} r-cran-clipr{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-hms{a} r-cran-httr{a} r-cran-httr2{a} r-cran-hwriter{a} r-cran-isoband{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfdr{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-pbapply{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-plyr{a} r-cran-png{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpparmadillo{a} r-cran-rcurl{a} r-cran-readr{a} r-cran-reshape2{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-scales{a} r-cran-snow{a} r-cran-statmod{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tzdb{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-venndiagram{a} r-cran-viridislite{a} r-cran-vroom{a} r-cran-withr{a} r-cran-xml{a} r-cran-xml2{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage javascript-common krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-base64enc r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-docopt r-cran-doparallel r-cran-foreach r-cran-formattable r-cran-fs r-cran-future r-cran-future.apply r-cran-gert r-cran-gh r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-pkgload r-cran-processx r-cran-profvis r-cran-promises r-cran-ps r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-remotes r-cran-rmariadb r-cran-rmarkdown r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-runit r-cran-rvest r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webfakes r-cran-webutils r-cran-whoami r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 340 newly installed, 0 to remove and 0 not upgraded. Need to get 271 MB of archives. After unpacking 736 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0045 [45.2 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.3 [2184 B] Get: 19 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 31 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get: 43 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 68 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.4-1 [1501 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.1.0-1 [478 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 112 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 114 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 115 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-6 [153 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-5 [260 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.44-5 [248 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.44-5 [60.4 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.44-5 [790 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.44-3 [366 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.2-1 [4516 B] Get: 140 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 164 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 165 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 169 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 174 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 dh-r all 20231212 [42.2 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 191 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 r-cran-littler amd64 0.3.20-2 [103 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 littler all 0.3.20-2 [16.0 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 195 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocgenerics all 0.52.0-1 [627 kB] Get: 196 http://deb.debian.org/debian experimental/main amd64 r-bioc-biobase amd64 2.66.0-1 [2316 kB] Get: 197 http://deb.debian.org/debian experimental/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-1 [2060 kB] Get: 198 http://deb.debian.org/debian experimental/main amd64 r-bioc-iranges amd64 2.40.0-1 [2310 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 r-cran-dbi all 1.2.3-1 [852 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 r-cran-rsqlite amd64 2.3.7-2 [1187 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 r-cran-curl amd64 5.2.3+dfsg-1 [178 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [401 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get: 224 http://deb.debian.org/debian experimental/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-1 [9940 B] Get: 225 http://deb.debian.org/debian experimental/main amd64 r-bioc-xvector amd64 0.46.0-1 [623 kB] Get: 226 http://deb.debian.org/debian experimental/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-1 [77.3 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 228 http://deb.debian.org/debian experimental/main amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-1 [3844 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 230 http://deb.debian.org/debian experimental/main amd64 r-bioc-biostrings amd64 2.74.0+dfsg-1 [13.4 MB] Get: 231 http://deb.debian.org/debian experimental/main amd64 r-bioc-keggrest all 1.46.0+dfsg-1 [184 kB] Get: 232 http://deb.debian.org/debian experimental/main amd64 r-bioc-annotationdbi all 1.68.0-1 [4701 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 r-cran-xml amd64 3.99-0.17-1 [1761 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 235 http://deb.debian.org/debian experimental/main amd64 r-bioc-annotate all 1.84.0+dfsg-1 [1865 kB] Get: 236 http://deb.debian.org/debian experimental/main amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-1 [2094 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB] Get: 238 http://deb.debian.org/debian experimental/main amd64 r-bioc-annotationfilter all 1.30.0+dfsg-1 [246 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 r-cran-stringi amd64 1.8.4-1 [895 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1247 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB] Get: 254 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocfilecache all 2.14.0+dfsg-1 [302 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] Get: 256 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocversion all 3.20.0-1~0exp0 [11.0 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Get: 259 http://deb.debian.org/debian experimental/main amd64 r-bioc-annotationhub all 3.14.0+dfsg-1 [446 kB] Get: 260 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocio all 1.16.0+dfsg-1 [210 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get: 268 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocparallel amd64 1.40.0-1 [1326 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 r-cran-hms all 1.1.3-1 [104 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 r-cran-httr2 all 1.0.5-1 [654 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 r-cran-xml2 amd64 1.3.6-1 [320 kB] Get: 275 http://deb.debian.org/debian experimental/main amd64 r-bioc-biomart all 2.62.0+dfsg-1 [461 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 r-cran-bitops amd64 1.0-8-1 [30.7 kB] Get: 277 http://deb.debian.org/debian experimental/main amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-1 [1334 kB] Get: 278 http://deb.debian.org/debian experimental/main amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-1 [3599 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 r-cran-matrixstats amd64 1.4.1-1 [510 kB] Get: 280 http://deb.debian.org/debian experimental/main amd64 r-bioc-matrixgenerics all 1.18.0-1 [446 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 284 http://deb.debian.org/debian experimental/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-1 [702 kB] Get: 285 http://deb.debian.org/debian experimental/main amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-1 [1371 kB] Get: 286 http://deb.debian.org/debian experimental/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-1 [2076 kB] Get: 287 http://deb.debian.org/debian experimental/main amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-1 [1119 kB] Get: 288 http://deb.debian.org/debian experimental/main amd64 r-bioc-genomicalignments amd64 1.42.0-1 [2162 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [799 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 r-cran-rjson amd64 0.2.23-1 [100.0 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 r-cran-restfulr amd64 0.0.15-1 [382 kB] Get: 292 http://deb.debian.org/debian experimental/main amd64 r-bioc-rtracklayer amd64 1.66.0-1 [5211 kB] Get: 293 http://deb.debian.org/debian experimental/main amd64 r-bioc-bsgenome all 1.74.0-1 [7014 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 r-cran-locfit amd64 1.5-9.10-1 [515 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 r-cran-nlme amd64 3.1.166-1 [2330 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] Get: 311 http://deb.debian.org/debian experimental/main amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-1 [1286 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 r-cran-hwriter all 1.3.2.1-1 [110 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] Get: 314 http://deb.debian.org/debian experimental/main amd64 r-bioc-geneplotter all 1.84.0+dfsg-1 [1511 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 r-cran-survival amd64 3.7-0-1 [6305 kB] Get: 316 http://deb.debian.org/debian experimental/main amd64 r-bioc-genefilter amd64 1.88.0-1 [1232 kB] Get: 317 http://deb.debian.org/debian experimental/main amd64 r-bioc-dexseq all 1.52.0+dfsg-1 [455 kB] Get: 318 http://deb.debian.org/debian experimental/main amd64 r-bioc-limma amd64 3.62.1+dfsg-1 [2022 kB] Get: 319 http://deb.debian.org/debian experimental/main amd64 r-bioc-edger amd64 4.4.1+dfsg-1 [1116 kB] Get: 320 http://deb.debian.org/debian experimental/main amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-1 [930 kB] Get: 321 http://deb.debian.org/debian experimental/main amd64 r-bioc-protgenerics all 1.38.0-1 [239 kB] Get: 322 http://deb.debian.org/debian experimental/main amd64 r-bioc-ensembldb all 2.30.0+dfsg-1 [1510 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 r-cran-clipr all 0.8.0-1 [53.0 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 r-cran-tzdb amd64 0.4.0-2 [499 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 r-cran-vroom amd64 1.6.5-1 [830 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 r-cran-readr amd64 2.1.5-1 [759 kB] Get: 327 http://deb.debian.org/debian experimental/main amd64 r-bioc-pfamanalyzer all 1.6.0+dfsg-1 [32.7 kB] Get: 328 http://deb.debian.org/debian experimental/main amd64 r-bioc-pwalign amd64 1.2.0-1 [755 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 r-cran-locfdr all 1.1-8-2 [307 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 r-cran-pbapply all 1.7-2-1 [103 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 r-cran-boot all 1.3-31-1 [639 kB] Get: 332 http://deb.debian.org/debian experimental/main amd64 r-bioc-saturn all 1.14.0+dfsg-1 [3019 kB] Get: 333 http://deb.debian.org/debian experimental/main amd64 r-bioc-sva amd64 3.54.0-1 [455 kB] Get: 334 http://deb.debian.org/debian experimental/main amd64 r-bioc-txdbmaker all 1.2.1+ds-1 [740 kB] Get: 335 http://deb.debian.org/debian experimental/main amd64 r-bioc-tximport all 1.34.0+dfsg-1 [91.2 kB] Get: 336 http://deb.debian.org/debian experimental/main amd64 r-bioc-tximeta all 1.24.0+dfsg-1 [539 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 r-cran-venndiagram all 1.7.3-1 [266 kB] Fetched 271 MB in 12s (23.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../003-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-6_amd64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-12_amd64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. 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Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../092-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../093-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. 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Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../100-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../101-libxft2_2.3.6-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../102-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../103-libxss1_1%3a1.2.3-1+b2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:amd64. 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Setting up r-cran-tzdb (0.4.0-2) ... Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.2.0+dfsg-1) ... Setting up r-bioc-s4arrays (1.6.0+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-bioc-biocparallel (1.40.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-edger (4.4.1+dfsg-1) ... Setting up r-bioc-rhtslib (3.2.0+dfsg-1) ... Setting up r-cran-venndiagram (1.7.3-1) ... Setting up r-cran-xml2 (1.3.6-1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-survival (3.7-0-1) ... Setting up r-bioc-biocio (1.16.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-cran-httr2 (1.0.5-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.46.0-1) ... Setting up r-cran-dplyr (1.1.4-4) ... Setting up dh-r (20231212) ... Setting up r-cran-rsqlite (2.3.7-2) ... Setting up r-cran-progress (1.2.3-1) ... Setting up r-cran-vroom (1.6.5-1) ... Setting up r-bioc-ucsc.utils (1.2.0+ds-1) ... Setting up r-bioc-sparsearray (1.6.0+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.42.1+dfsg-1) ... Setting up r-cran-readr (2.1.5-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.32.0+dfsg-1) ... Setting up r-bioc-biocfilecache (2.14.0+dfsg-1) ... Setting up r-bioc-genomicranges (1.58.0+dfsg-1) ... Setting up r-bioc-biostrings (2.74.0+dfsg-1) ... Setting up r-bioc-annotationfilter (1.30.0+dfsg-1) ... Setting up r-bioc-pfamanalyzer (1.6.0+dfsg-1) ... Setting up r-bioc-rsamtools (2.22.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-1) ... Setting up r-bioc-pwalign (1.2.0-1) ... Setting up r-bioc-keggrest (1.46.0+dfsg-1) ... Setting up r-bioc-deseq2 (1.46.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.68.0-1) ... Setting up r-bioc-annotationhub (3.14.0+dfsg-1) ... Setting up r-bioc-annotate (1.84.0+dfsg-1) ... Setting up r-bioc-biomart (2.62.0+dfsg-1) ... Setting up r-bioc-saturn (1.14.0+dfsg-1) ... Setting up r-bioc-genefilter (1.88.0-1) ... Setting up r-bioc-genomicalignments (1.42.0-1) ... Setting up r-bioc-geneplotter (1.84.0+dfsg-1) ... Setting up r-bioc-rtracklayer (1.66.0-1) ... Setting up r-bioc-genomicfeatures (1.58.0+dfsg-1) ... Setting up r-bioc-dexseq (1.52.0+dfsg-1) ... Setting up r-bioc-sva (3.54.0-1) ... Setting up r-bioc-bsgenome (1.74.0-1) ... Setting up r-bioc-txdbmaker (1.2.1+ds-1) ... Setting up r-bioc-ensembldb (2.30.0+dfsg-1) ... Setting up r-bioc-tximeta (1.24.0+dfsg-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-isoformswitchanalyzer_2.6.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-isoformswitchanalyzer dpkg-buildpackage: info: source version 2.6.0+ds-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds' dh_auto_install I: R Package: IsoformSwitchAnalyzeR Version: 2.6.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 03 Dec 2024 18:31:37 +0100 mkdir -p /build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0\+ds/debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0\+ds/debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 03 Dec 2024 18:31:37 +0100'" * installing *source* package 'IsoformSwitchAnalyzeR' ... file 'inst/doc/IsoformSwitchAnalyzeR.html' is missing ** using staged installation ** libs using C compiler: 'gcc (Debian 14.2.0-8) 14.2.0' make[2]: Entering directory '/build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds/src' gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o IsoformSwitchAnalyzeR.so utils.o -L/usr/lib/R/lib -lR make[2]: Leaving directory '/build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds/src' make[2]: Entering directory '/build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds/src' make[2]: Leaving directory '/build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds/src' installing to /build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds/debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/00LOCK-r-bioc-isoformswitchanalyzer-2.6.0+ds/00new/IsoformSwitchAnalyzeR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsoformSwitchAnalyzeR) W: Ignoring specified R dependency: R (>= 4.2) I: Using r-bioc-limma for Depends:limma I: Using r-bioc-dexseq for Depends:DEXSeq I: Using r-bioc-saturn for Depends:satuRn (>= 1.7.0) I: Using r-bioc-sva for Depends:sva I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 3.3.5) I: Using r-bioc-pfamanalyzer for Depends:pfamAnalyzeR I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-bsgenome for Imports:BSgenome I: Using r-cran-plyr for Imports:plyr I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-cran-gridextra for Imports:gridExtra I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.50.0) I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-genomicranges for Imports:GenomicRanges I: Using r-cran-rcolorbrewer by changing version to for Imports:RColorBrewer I: Using r-bioc-rtracklayer for Imports:rtracklayer I: Using r-cran-venndiagram for Imports:VennDiagram I: Using r-cran-dbi for Imports:DBI I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb I: Using r-bioc-tximport for Imports:tximport (>= 1.7.1) I: Using r-bioc-tximeta for Imports:tximeta (>= 1.7.12) I: Using r-bioc-edger for Imports:edgeR I: Using r-cran-futile.logger for Imports:futile.logger I: Using r-cran-stringr for Imports:stringr I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-magrittr for Imports:magrittr I: Using r-cran-readr for Imports:readr I: Using r-cran-tibble for Imports:tibble I: Using r-bioc-xvector for Imports:XVector I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-cran-rcurl for Imports:RCurl I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-cran-tidyr for Imports:tidyr I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-biocparallel for Imports:BiocParallel I: Using r-bioc-pwalign for Imports:pwalign I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-isoformswitchanalyzer as Debian binary package for variables substitution # upstream's file is not gzipped mv debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example_isoform_nt.fasta.gz \ debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example_isoform_nt.fasta gzip debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example_isoform_nt.fasta make[1]: Leaving directory '/build/reproducible-path/r-bioc-isoformswitchanalyzer-2.6.0+ds' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dpkg-gencontrol: warning: Depends field of package r-bioc-isoformswitchanalyzer: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package r-bioc-isoformswitchanalyzer: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-isoformswitchanalyzer-dbgsym' in '../r-bioc-isoformswitchanalyzer-dbgsym_2.6.0+ds-1_amd64.deb'. dpkg-deb: building package 'r-bioc-isoformswitchanalyzer' in '../r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/879447 and its subdirectories I: Current time: Sun Dec 15 08:39:47 -12 2024 I: pbuilder-time-stamp: 1734295187 Sun Dec 15 20:39:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun Dec 15 20:39:48 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun Dec 15 20:43:11 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun Dec 15 20:43:12 UTC 2024 I: r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.changes: Format: 1.8 Date: Tue, 03 Dec 2024 18:31:37 +0100 Source: r-bioc-isoformswitchanalyzer Binary: r-bioc-isoformswitchanalyzer r-bioc-isoformswitchanalyzer-dbgsym Architecture: amd64 Version: 2.6.0+ds-1 Distribution: experimental Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-isoformswitchanalyzer - Identify, Annotate and Visualize Alternative Splicing and Changes: r-bioc-isoformswitchanalyzer (2.6.0+ds-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: 86e951831235cace83c03313e38fe729dd4e4c22 3392 r-bioc-isoformswitchanalyzer-dbgsym_2.6.0+ds-1_amd64.deb e73fd44b64562f11712c5f92c0019f70a0f951a9 15231 r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo c6e7225f328e6f55c255168f435d4ab6ac37a56d 4117412 r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.deb Checksums-Sha256: a45baa8129aa085ec135f39c575ecb1decd728485175a864ed64c01a17fe1ffd 3392 r-bioc-isoformswitchanalyzer-dbgsym_2.6.0+ds-1_amd64.deb 240713116151f932db67d935859696a67357865b4ff9fddd514332528b195345 15231 r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo c61493baca001de7c155849e6a957afa53de4c6d77172ce87bd12a22c24bddf4 4117412 r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.deb Files: 35628a0f9499f54c30700b0b04315dd6 3392 debug optional r-bioc-isoformswitchanalyzer-dbgsym_2.6.0+ds-1_amd64.deb 789a4e387dfea1d1a782199bdae199f9 15231 gnu-r optional r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo c1be85442960fc8bee5fe19085058198 4117412 gnu-r optional r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.deb Sun Dec 15 20:43:13 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_11-38923.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.EYfGJnLL/r-bioc-isoformswitchanalyzer_2.6.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.EYfGJnLL/r-bioc-isoformswitchanalyzer_2.6.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.EYfGJnLL/r-bioc-isoformswitchanalyzer_2.6.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.EYfGJnLL/b1/r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.EYfGJnLL/b2/r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.379s) 0.379s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.052s) 0.052s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 709ms CPU time consumed: 708ms Sun Dec 15 20:43:14 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Sun Dec 15 20:43:14 UTC 2024 I: r-bioc-isoformswitchanalyzer from experimental built successfully and reproducibly on amd64. Sun Dec 15 20:43:15 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Dec 15 20:43:15 UTC 2024 I: Submitting 16K b1/r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo.asc Sun Dec 15 20:43:16 UTC 2024 I: Submitting 16K b2/r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo.asc Sun Dec 15 20:43:17 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Dec 15 20:43:17 UTC 2024 I: Done submitting .buildinfo files. Sun Dec 15 20:43:17 UTC 2024 I: Removing signed r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo.asc files: removed './b1/r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo.asc' removed './b2/r-bioc-isoformswitchanalyzer_2.6.0+ds-1_amd64.buildinfo.asc'