Wed Dec 11 16:56:33 UTC 2024 I: starting to build r-bioc-hdf5array/experimental/amd64 on jenkins on '2024-12-11 16:56' Wed Dec 11 16:56:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/39672/console.log Wed Dec 11 16:56:33 UTC 2024 I: Downloading source for experimental/r-bioc-hdf5array=1.34.0-1 --2024-12-11 16:56:33-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-hdf5array/r-bioc-hdf5array_1.34.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-hdf5array_1.34.0-1.dsc’ 0K .. 100% 338M=0s 2024-12-11 16:56:33 (338 MB/s) - ‘r-bioc-hdf5array_1.34.0-1.dsc’ saved [2379/2379] Wed Dec 11 16:56:33 UTC 2024 I: r-bioc-hdf5array_1.34.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-hdf5array Binary: r-bioc-hdf5array Architecture: any Version: 1.34.0-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller , Charles Plessy Homepage: https://bioconductor.org/packages/HDF5Array/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-hdf5array.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-sparsearray (>= 1.5.42), r-bioc-delayedarray (>= 0.31.8), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.51.2), r-bioc-s4vectors, r-bioc-iranges, r-bioc-s4arrays, r-bioc-rhdf5lib, libhdf5-dev, architecture-is-64-bit Package-List: r-bioc-hdf5array deb gnu-r optional arch=any Checksums-Sha1: 7d0afaffa78caf203077a44f72ad6dea88f4060e 8107009 r-bioc-hdf5array_1.34.0.orig.tar.gz c001ab5a7a7dd884a3d2569da75e929c130f5f36 6560 r-bioc-hdf5array_1.34.0-1.debian.tar.xz Checksums-Sha256: 2072bcba0a5cf788c32f56e77d9b52d51a2b19ba49ac7328d1cc16a76da579ca 8107009 r-bioc-hdf5array_1.34.0.orig.tar.gz 6c040049dcc346719ab48a62e4b281d19f87f30fceebf7d56136befb180683df 6560 r-bioc-hdf5array_1.34.0-1.debian.tar.xz Files: 82321c8a1bad0392f898462a6d8a1d60 8107009 r-bioc-hdf5array_1.34.0.orig.tar.gz a00678f84c25ad6e994f879c50a2817e 6560 r-bioc-hdf5array_1.34.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdJd9kSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+binEAP/ibumytRLkMPCMXh2daF47aO/9eExzVA hRKHuOAPRd3iL5Bbx+/UKgunn7/s+8UbSrq1xCz/0x/yJxRGsBHTi5Cq17pLK8cV gi2m1EUgL/TCCEPhWg9go9qtOXuVmRd8AD7cbI/xy5gzrsJbMoz8g3RMI54RRJ8Y qC27A/91Y3CydlPixvBAtcjAGDcoG0ApYmS+O9kq8X57g4JWuw+m4hJlarEE/VHS QTPkAydPx+jt2q459KQmno4Qdo0GrKAo/JY/kocEl0GIBK2nDgpnn0kotu8O+44a JesUul0YaZEhfavMmKg7mOMrsha7CzJIZ8AjT4jLzxBlV8RS5Sl+HQtQB1OyiQEE EeFhSopv9nY+aYBBceCan9QWmrFxOpHX9dcbvTzQJ1gimX66tGqjixjmz3nsow0H novzFYPbhhUIpTGhWrdfXVLi6+l0XLbezodEmlISZKl8kcPhYnCsLzKD7Men7Tvn N9fhEr0zE3cMqjmpo3rWDx6ddboyHUH0TOENvhAkIP42l4vOL1UYzfGZHv6gpNoW v96DPGF2q4Ho0Ldz4UKHyoUbtaOtENFgsHtt6Gr3fNC+46ZR/8ZrjFjZQsFzKUAY H+pnFQrwRprZRwk1ltJZm0bGd9KnRZjVBFvP1EdqobxnZ/OIe80TOwMTFCN2l31B OBiNWXwNKyOG =isNl -----END PGP SIGNATURE----- Wed Dec 11 16:56:33 UTC 2024 I: Checking whether the package is not for us Wed Dec 11 16:56:33 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Wed Dec 11 16:56:33 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Wed Dec 11 16:58:23 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 13 11:19:35 -12 2026 I: pbuilder-time-stamp: 1768346375 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-hdf5array_1.34.0-1.dsc] I: copying [./r-bioc-hdf5array_1.34.0.orig.tar.gz] I: copying [./r-bioc-hdf5array_1.34.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 29 08:14:17 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-hdf5array_1.34.0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-hdf5array in r-bioc-hdf5array-1.34.0 dpkg-source: info: unpacking r-bioc-hdf5array_1.34.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-hdf5array_1.34.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libhdf5.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/392051/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='57982664dd2f4e7489717d9108de0579' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='392051' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RA8yzH6R/pbuilderrc_h737 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RA8yzH6R/b1 --logfile b1/build.log r-bioc-hdf5array_1.34.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/392051/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-sparsearray (>= 1.5.42), r-bioc-delayedarray (>= 0.31.8), r-bioc-rhdf5, r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.51.2), r-bioc-s4vectors, r-bioc-iranges, r-bioc-s4arrays, r-bioc-rhdf5lib, libhdf5-dev, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sparsearray (>= 1.5.42); however: Package r-bioc-sparsearray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedarray (>= 0.31.8); however: Package r-bioc-delayedarray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5filters; however: Package r-bioc-rhdf5filters is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.51.2); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4arrays; however: Package r-bioc-s4arrays is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5lib; however: Package r-bioc-rhdf5lib is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldap-dev{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-iranges{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-cran-abind{a} r-cran-crayon{a} r-cran-lattice{a} r-cran-matrix{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-mockery r-cran-testthat r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 240 newly installed, 0 to remove and 0 not upgraded. Need to get 134 MB of archives. After unpacking 409 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-sparsearray (>= 1.5.42) but it is not going to be installed Depends: r-bioc-delayedarray (>= 0.31.8) but it is not going to be installed Depends: r-bioc-biocgenerics (>= 0.51.2) but 0.50.0-2 is to be installed The following actions will resolve these dependencies: Install the following packages: 1) r-bioc-biocgenerics [0.52.0-1 (experimental)] 2) r-bioc-delayedarray [0.32.0+dfsg-1 (experimental)] 3) r-bioc-iranges [2.40.0-1 (experimental)] 4) r-bioc-matrixgenerics [1.18.0-1 (experimental)] 5) r-bioc-rhdf5 [2.50.0+dfsg-2 (experimental)] 6) r-bioc-rhdf5filters [1.18.0+dfsg-1 (experimental)] 7) r-bioc-rhdf5lib [1.28.0+dfsg-1 (experimental)] 8) r-bioc-s4arrays [1.6.0+dfsg-1 (experimental)] 9) r-bioc-s4vectors [0.44.0+dfsg-1 (experimental)] 10) r-bioc-sparsearray [1.6.0+dfsg-1 (experimental)] 11) r-bioc-xvector [0.46.0-1 (experimental)] 12) r-bioc-zlibbioc [1.52.0+dfsg-1 (experimental)] 13) r-cran-matrixstats [1.4.1-1 (unstable)] The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldap-dev{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-delayedarray{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-crayon{a} r-cran-lattice{a} r-cran-matrix{a} r-cran-matrixstats{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-r.devices r-cran-r.rsp r-cran-testthat r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 246 newly installed, 0 to remove and 0 not upgraded. Need to get 139 MB of archives. After unpacking 418 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0045 [45.2 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.3 [2184 B] Get: 19 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2~rc1-2 [55.4 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 33 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B] Get: 45 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.3-2 [1501 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.1.0-1 [478 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB] Get: 113 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get: 115 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get: 116 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-5 [153 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-5 [260 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.44-5 [248 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.44-5 [60.4 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.44-5 [790 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.44-3 [366 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.2-1 [4516 B] Get: 141 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 165 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 166 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 170 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 175 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 dh-r all 20231212 [42.2 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.5+repack-1 [26.3 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-3 [59.5 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-3 [41.7 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-3 [42.0 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-3 [53.5 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-3 [126 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 198 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-3 [15.7 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.5.18+dfsg-3+b1 [303 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1 [598 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-2+b1 [208 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.3.2-2 [2742 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-1+b1 [365 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.11.0-1 [461 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5+b1 [1254 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.5+repack-1 [1340 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-1 [133 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-1 [112 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-1 [69.0 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-1 [43.6 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-1 [24.1 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.5+repack-1 [3165 kB] Get: 230 http://deb.debian.org/debian experimental/main amd64 r-bioc-biocgenerics all 0.52.0-1 [627 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 r-cran-matrixstats amd64 1.4.1-1 [510 kB] Get: 234 http://deb.debian.org/debian experimental/main amd64 r-bioc-matrixgenerics all 1.18.0-1 [446 kB] Get: 235 http://deb.debian.org/debian experimental/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-1 [2060 kB] Get: 236 http://deb.debian.org/debian experimental/main amd64 r-bioc-iranges amd64 2.40.0-1 [2310 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 239 http://deb.debian.org/debian experimental/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-1 [702 kB] Get: 240 http://deb.debian.org/debian experimental/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-1 [9940 B] Get: 241 http://deb.debian.org/debian experimental/main amd64 r-bioc-xvector amd64 0.46.0-1 [623 kB] Get: 242 http://deb.debian.org/debian experimental/main amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-1 [1371 kB] Get: 243 http://deb.debian.org/debian experimental/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-1 [2076 kB] Get: 244 http://deb.debian.org/debian experimental/main amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-1 [104 kB] Get: 245 http://deb.debian.org/debian experimental/main amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-1 [139 kB] Get: 246 http://deb.debian.org/debian experimental/main amd64 r-bioc-rhdf5 amd64 2.50.0+dfsg-2 [865 kB] Fetched 139 MB in 2s (65.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../003-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-6_amd64.deb ... Unpacking groff-base (1.23.0-6) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-12_amd64.deb ... Unpacking bsdextrautils (2.40.2-12) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0045_all.deb ... Moving old data out of the way Unpacking ucf (3.0045) ... Selecting previously unselected package architecture-properties:amd64. Preparing to unpack .../017-architecture-properties_0.2.3_amd64.deb ... Unpacking architecture-properties:amd64 (0.2.3) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../023-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../024-comerr-dev_2.1-1.47.2~rc1-2_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2~rc1-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../025-dctrl-tools_2.24-3+b1_amd64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../026-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../027-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../028-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../029-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../030-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../031-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../032-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../033-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../034-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../035-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../036-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../037-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../038-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../039-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zip. Preparing to unpack .../040-zip_3.0-14_amd64.deb ... Unpacking zip (3.0-14) ... Selecting previously unselected package unzip. Preparing to unpack .../041-unzip_6.0-28_amd64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../042-libpaper1_1.1.29+b2_amd64.deb ... Unpacking libpaper1:amd64 (1.1.29+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../043-libpaper-utils_1.1.29+b2_amd64.deb ... Unpacking libpaper-utils (1.1.29+b2) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../044-xdg-utils_1.2.1-2_all.deb ... Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../045-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libexpat1:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../094-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../095-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../102-libxft2_2.3.6-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../103-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../104-libxss1_1%3a1.2.3-1+b2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../105-libtk8.6_8.6.15-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.15-1) ... Selecting previously unselected package libice6:amd64. 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Setting up r-bioc-s4vectors (0.44.0+dfsg-1) ... Setting up libhdf5-dev (1.14.5+repack-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-bioc-iranges (2.40.0-1) ... Setting up r-bioc-s4arrays (1.6.0+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-rhdf5lib (1.28.0+dfsg-1) ... Setting up r-bioc-rhdf5filters (1.18.0+dfsg-1) ... Setting up r-bioc-xvector (0.46.0-1) ... Setting up dh-r (20231212) ... Setting up r-bioc-sparsearray (1.6.0+dfsg-1) ... Setting up r-bioc-rhdf5 (2.50.0+dfsg-2) ... Setting up r-bioc-delayedarray (0.32.0+dfsg-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-hdf5array-1.34.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-hdf5array_1.34.0-1_source.changes dpkg-buildpackage: info: source package r-bioc-hdf5array dpkg-buildpackage: info: source version 1.34.0-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-hdf5array/ -O--buildsystem=R I: R Package: HDF5Array Version: 1.34.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 01 Nov 2024 08:46:18 +0100 mkdir -p /build/reproducible-path/r-bioc-hdf5array-1.34.0/debian/r-bioc-hdf5array/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-hdf5array-1.34.0/debian/r-bioc-hdf5array/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 01 Nov 2024 08:46:18 +0100'" * installing *source* package 'HDF5Array' ... file 'src/Makevars' has the wrong MD5 checksum ** using staged installation ** libs using C compiler: 'gcc (Debian 14.2.0-8) 14.2.0' make[1]: Entering directory '/build/reproducible-path/r-bioc-hdf5array-1.34.0/src' gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c H5File.c -o H5File.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c global_errmsg_buf.c -o global_errmsg_buf.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c H5DSetDescriptor.c -o H5DSetDescriptor.o H5DSetDescriptor.c: In function 'C_show_H5DSetDescriptor_xp': H5DSetDescriptor.c:1192:30: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'hsize_t' {aka 'long unsigned int'} [-Wformat=] 1192 | Rprintf(" %llu", h5dset->h5dim[h5along]); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | | hsize_t {aka long unsigned int} | long long unsigned int | %lu H5DSetDescriptor.c:1202:38: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'hsize_t' {aka 'long unsigned int'} [-Wformat=] 1202 | Rprintf(" %llu", | ~~~^ | | | long long unsigned int | %lu 1203 | h5dset->h5chunkdim[h5along]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | hsize_t {aka long unsigned int} gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c h5dimscales.c -o h5dimscales.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c uaselection.c -o uaselection.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_helpers.c -o h5mread_helpers.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_startscounts.c -o h5mread_startscounts.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c ChunkIterator.c -o ChunkIterator.o In file included from ChunkIterator.c:7: ChunkIterator.c: In function 'read_h5chunk': ChunkIterator.c:309:37: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'hsize_t' {aka 'long unsigned int'} [-Wformat=] 309 | PRINT_TO_ERRMSG_BUF("chunk storage size (%llu) bigger " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 | "than expected (%llu + %d)", 311 | chunk_storage_size, | ~~~~~~~~~~~~~~~~~~ | | | hsize_t {aka long unsigned int} global_errmsg_buf.h:9:69: note: in definition of macro 'PRINT_TO_ERRMSG_BUF' 9 | snprintf(_HDF5Array_global_errmsg_buf(), ERRMSG_BUF_LENGTH, __VA_ARGS__) | ^~~~~~~~~~~ ChunkIterator.c:309:61: note: format string is defined here 309 | PRINT_TO_ERRMSG_BUF("chunk storage size (%llu) bigger " | ~~~^ | | | long long unsigned int | %lu ChunkIterator.c: In function '_print_tchunk_info': ChunkIterator.c:474:35: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 3 has type 'hsize_t' {aka 'long unsigned int'} [-Wformat=] 474 | Rprintf("#%lld=%llu:%llu", tchunkidx + 1, | ~~~^ | | | long long unsigned int | %lu 475 | chunk_iter->h5dset_vp.h5off[h5along] + 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | hsize_t {aka long unsigned int} ChunkIterator.c:474:40: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'hsize_t' {aka 'long unsigned int'} [-Wformat=] 474 | Rprintf("#%lld=%llu:%llu", tchunkidx + 1, | ~~~^ | | | long long unsigned int | %lu 475 | chunk_iter->h5dset_vp.h5off[h5along] + 1, 476 | chunk_iter->h5dset_vp.h5off[h5along] + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | hsize_t {aka long unsigned int} 477 | chunk_iter->h5dset_vp.h5dim[h5along]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_index.c -o h5mread_index.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread_sparse.c -o h5mread_sparse.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c h5mread.c -o h5mread.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c h5summarize.c -o h5summarize.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/Rhdf5lib/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_HDF5Array.c -o R_init_HDF5Array.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o HDF5Array.so S4Vectors_stubs.o H5File.o global_errmsg_buf.o H5DSetDescriptor.o h5dimscales.o uaselection.o h5mread_helpers.o h5mread_startscounts.o ChunkIterator.o h5mread_index.o h5mread_sparse.o h5mread.o h5summarize.o R_init_HDF5Array.o /usr/lib/R/site-library/Rhdf5lib/libs/Rhdf5lib.so -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -lhdf5 -lhdf5_hl -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-hdf5array-1.34.0/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-hdf5array-1.34.0/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-hdf5array-1.34.0/src' installing to /build/reproducible-path/r-bioc-hdf5array-1.34.0/debian/r-bioc-hdf5array/usr/lib/R/site-library/00LOCK-r-bioc-hdf5array-1.34.0/00new/HDF5Array/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HDF5Array) W: Ignoring specified R dependency: R (>= 3.4) I: Using r-bioc-sparsearray for Depends:SparseArray (>= 1.5.42) I: Using r-bioc-delayedarray for Depends:DelayedArray (>= 0.31.8) I: Using r-bioc-rhdf5 for Depends:rhdf5 (>= 2.31.6) I: Using r-bioc-biocparallel for Suggests:BiocParallel I: Using r-bioc-genomicranges for Suggests:GenomicRanges I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment (>= 1.15.1) W: Cannot find a debian package for Suggests:h5vcData I: Using r-bioc-experimenthub for Suggests:ExperimentHub W: Cannot find a debian package for Suggests:TENxBrainData W: Cannot find a debian package for Suggests:zellkonverter I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-singlecellexperiment for Suggests:SingleCellExperiment I: Using r-bioc-delayedmatrixstats for Suggests:DelayedMatrixStats I: Using r-bioc-genefilter for Suggests:genefilter I: Using r-cran-matrix by changing version to for Imports:Matrix I: Using r-bioc-rhdf5filters for Imports:rhdf5filters I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.51.2) I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-s4arrays for Imports:S4Arrays (>= 1.1.1) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors (>= 0.27.13) I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-hdf5array as Debian binary package for variables substitution debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/r-bioc-hdf5array-1.34.0' find debian -name test_H5ADMatrixSeed-class.R -delete make[1]: Leaving directory '/build/reproducible-path/r-bioc-hdf5array-1.34.0' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-hdf5array-dbgsym' in '../r-bioc-hdf5array-dbgsym_1.34.0-1_amd64.deb'. dpkg-deb: building package 'r-bioc-hdf5array' in '../r-bioc-hdf5array_1.34.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-hdf5array_1.34.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-hdf5array_1.34.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/392051 and its subdirectories I: Current time: Tue Jan 13 11:21:22 -12 2026 I: pbuilder-time-stamp: 1768346482 Wed Dec 11 16:58:24 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Wed Dec 11 16:58:24 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Wed Dec 11 17:06:55 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Wed Dec 11 17:06:56 UTC 2024 I: r-bioc-hdf5array_1.34.0-1_amd64.changes: Format: 1.8 Date: Fri, 01 Nov 2024 08:46:18 +0100 Source: r-bioc-hdf5array Binary: r-bioc-hdf5array r-bioc-hdf5array-dbgsym Architecture: amd64 Version: 1.34.0-1 Distribution: experimental Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-hdf5array - HDF5 backend for DelayedArray objects Changes: r-bioc-hdf5array (1.34.0-1) experimental; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: 8a7279162c2e75911ba9f537221a42ae86f3fe1a 184116 r-bioc-hdf5array-dbgsym_1.34.0-1_amd64.deb 66b5c57443076c51ee6d5c5a7c79d39598b1281a 12291 r-bioc-hdf5array_1.34.0-1_amd64.buildinfo a44213b8b8a19a49498172ec27904e1c2a790fda 8792200 r-bioc-hdf5array_1.34.0-1_amd64.deb Checksums-Sha256: 3e73612e8ee08610e2c779bfa614ef978878c958e9aaa579158e1afe16154b98 184116 r-bioc-hdf5array-dbgsym_1.34.0-1_amd64.deb b0a8198f7d1a8aef7efb3f02f28324facfc6da6a2e49cc3fff63f69a128b5e0a 12291 r-bioc-hdf5array_1.34.0-1_amd64.buildinfo e3b60ce20a75c1582fbd54e56be82cee367df2963472a218f9c023f2e45103e3 8792200 r-bioc-hdf5array_1.34.0-1_amd64.deb Files: e0b89a33f29e171e63edbc10f388aa63 184116 debug optional r-bioc-hdf5array-dbgsym_1.34.0-1_amd64.deb bcfbccb1f81f9269c86431e768a7ca8b 12291 gnu-r optional r-bioc-hdf5array_1.34.0-1_amd64.buildinfo d86871802eddf370c7aa2691ea52ec44 8792200 gnu-r optional r-bioc-hdf5array_1.34.0-1_amd64.deb Wed Dec 11 17:06:57 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-amd64_34-39672.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RA8yzH6R/r-bioc-hdf5array_1.34.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RA8yzH6R/r-bioc-hdf5array_1.34.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RA8yzH6R/r-bioc-hdf5array_1.34.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RA8yzH6R/b1/r-bioc-hdf5array_1.34.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RA8yzH6R/b2/r-bioc-hdf5array_1.34.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.410s) 0.410s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.092s) 0.092s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 705ms CPU time consumed: 706ms Wed Dec 11 17:06:59 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Wed Dec 11 17:06:59 UTC 2024 I: r-bioc-hdf5array from experimental built successfully and reproducibly on amd64. Wed Dec 11 17:07:00 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Dec 11 17:07:00 UTC 2024 I: Submitting 16K b1/r-bioc-hdf5array_1.34.0-1_amd64.buildinfo.asc Wed Dec 11 17:07:01 UTC 2024 I: Submitting 16K b2/r-bioc-hdf5array_1.34.0-1_amd64.buildinfo.asc Wed Dec 11 17:07:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Dec 11 17:07:02 UTC 2024 I: Done submitting .buildinfo files. Wed Dec 11 17:07:02 UTC 2024 I: Removing signed r-bioc-hdf5array_1.34.0-1_amd64.buildinfo.asc files: removed './b1/r-bioc-hdf5array_1.34.0-1_amd64.buildinfo.asc' removed './b2/r-bioc-hdf5array_1.34.0-1_amd64.buildinfo.asc'