Wed Dec 11 00:56:10 UTC 2024  I: starting to build r-bioc-gypsum/experimental/amd64 on jenkins on '2024-12-11 00:55'
Wed Dec 11 00:56:10 UTC 2024  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_11/38365/console.log
Wed Dec 11 00:56:10 UTC 2024  I: Downloading source for experimental/r-bioc-gypsum=1.2.0+ds-1
--2024-12-11 00:56:11--  http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-gypsum/r-bioc-gypsum_1.2.0%2bds-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2128 (2.1K) [text/prs.lines.tag]
Saving to: ‘r-bioc-gypsum_1.2.0+ds-1.dsc’

     0K ..                                                    100%  326M=0s

2024-12-11 00:56:11 (326 MB/s) - ‘r-bioc-gypsum_1.2.0+ds-1.dsc’ saved [2128/2128]

Wed Dec 11 00:56:11 UTC 2024  I: r-bioc-gypsum_1.2.0+ds-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-gypsum
Binary: r-bioc-gypsum
Architecture: all
Version: 1.2.0+ds-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Michael R. Crusoe <crusoe@debian.org>
Homepage: https://bioconductor.org/packages/gypsum/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-gypsum
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-gypsum.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr2, r-cran-jsonlite, r-cran-filelock, r-cran-rappdirs
Package-List:
 r-bioc-gypsum deb gnu-r optional arch=all
Checksums-Sha1:
 7dbb2846c07d5e206923bbf4b2a725e040f48cd0 43060 r-bioc-gypsum_1.2.0+ds.orig.tar.xz
 1eccee5dd65f502275bcb3c8ca09439269ddfc0b 3244 r-bioc-gypsum_1.2.0+ds-1.debian.tar.xz
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 4c6b46c83a2555abd95e0dfef7f504bd4ef40f67329a22d26cd316ba001bc463 43060 r-bioc-gypsum_1.2.0+ds.orig.tar.xz
 3b855dea455f49e78496109df8497e755ff44788887a708b8a0ad54e7b675251 3244 r-bioc-gypsum_1.2.0+ds-1.debian.tar.xz
Files:
 55c4badc24c9609e007ee9b00ad1d406 43060 r-bioc-gypsum_1.2.0+ds.orig.tar.xz
 95d516bf2db439b13f07c8c4c8f0c9fa 3244 r-bioc-gypsum_1.2.0+ds-1.debian.tar.xz
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Wed Dec 11 00:56:11 UTC 2024  I: Checking whether the package is not for us
Wed Dec 11 00:56:11 UTC 2024  I: Starting 1st build on remote node ionos1-amd64.debian.net.
Wed Dec 11 00:56:11 UTC 2024  I: Preparing to do remote build '1' on ionos1-amd64.debian.net.
Wed Dec 11 01:00:03 UTC 2024  I: Deleting $TMPDIR on ionos1-amd64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Dec 10 12:56:13 -12 2024
I: pbuilder-time-stamp: 1733878573
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-bioc-gypsum_1.2.0+ds-1.dsc]
I: copying [./r-bioc-gypsum_1.2.0+ds.orig.tar.xz]
I: copying [./r-bioc-gypsum_1.2.0+ds-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Nov 26 08:36:07 2024 
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv:                issuer "crusoe@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-gypsum_1.2.0+ds-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-gypsum in r-bioc-gypsum-1.2.0+ds
dpkg-source: info: unpacking r-bioc-gypsum_1.2.0+ds.orig.tar.xz
dpkg-source: info: unpacking r-bioc-gypsum_1.2.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_jsonvalidate
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2470959/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
  DISTRIBUTION='experimental'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='cca62a155ce047ee96575960eb2f59f5'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2470959'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wKNjcFyU/pbuilderrc_Sp5O --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wKNjcFyU/b1 --logfile b1/build.log r-bioc-gypsum_1.2.0+ds-1.dsc'
  SUDO_GID='110'
  SUDO_UID='105'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://46.16.76.132:3128'
I: uname -a
  Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2470959/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr2, r-cran-jsonlite, r-cran-filelock, r-cran-rappdirs
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19965 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-httr2; however:
  Package r-cran-httr2 is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-jsonlite; however:
  Package r-cran-jsonlite is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-filelock; however:
  Package r-cran-filelock is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-rappdirs; however:
  Package r-cran-rappdirs is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-cran-askpass{a} r-cran-cli{a} r-cran-curl{a} r-cran-filelock{a} r-cran-glue{a} r-cran-httr2{a} r-cran-jsonlite{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-openssl{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rlang{a} r-cran-sys{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-bench r-cran-bit64 r-cran-callr r-cran-clipr r-cran-covr r-cran-crayon r-cran-dbi r-cran-digest r-cran-docopt r-cran-dplyr r-cran-fs r-cran-generics r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-knitr r-cran-later r-cran-lintr r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-processx r-cran-promises r-cran-ps r-cran-r.rsp r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-sodium r-cran-spelling r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-waldo r-cran-webfakes r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 203 newly installed, 0 to remove and 0 not upgraded.
Need to get 111 MB of archives. After unpacking 334 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-4 [256 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0045 [45.2 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 22 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 30 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB]
Get: 39 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B]
Get: 42 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 43 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB]
Get: 47 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB]
Get: 51 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB]
Get: 52 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 54 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 67 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB]
Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 73 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 76 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.3-1 [1502 kB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB]
Get: 80 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.1.0-1 [478 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get: 87 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get: 88 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB]
Get: 94 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 101 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB]
Get: 102 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB]
Get: 103 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB]
Get: 104 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB]
Get: 105 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get: 106 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB]
Get: 107 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB]
Get: 108 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB]
Get: 109 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB]
Get: 110 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB]
Get: 111 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB]
Get: 112 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B]
Get: 113 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B]
Get: 114 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB]
Get: 115 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB]
Get: 116 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB]
Get: 117 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB]
Get: 118 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-5 [153 kB]
Get: 119 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB]
Get: 120 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB]
Get: 121 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-5 [260 kB]
Get: 122 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.44-5 [248 kB]
Get: 123 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.44-5 [60.4 kB]
Get: 124 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.44-5 [790 kB]
Get: 125 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 126 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.44-2 [366 kB]
Get: 127 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB]
Get: 128 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB]
Get: 129 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB]
Get: 130 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB]
Get: 131 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB]
Get: 132 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB]
Get: 133 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get: 134 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get: 135 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get: 136 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB]
Get: 137 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB]
Get: 138 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.2-1 [4516 B]
Get: 139 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 140 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB]
Get: 141 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get: 142 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 143 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 144 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 145 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 146 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 147 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get: 148 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get: 149 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get: 150 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get: 151 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get: 152 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get: 153 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get: 154 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB]
Get: 155 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get: 156 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 157 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 158 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 159 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 160 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get: 161 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB]
Get: 162 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 163 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 164 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 165 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 166 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 167 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 168 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 169 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get: 170 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 171 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 172 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 173 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 174 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB]
Get: 175 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB]
Get: 176 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get: 177 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get: 178 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get: 179 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB]
Get: 180 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 181 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB]
Get: 182 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB]
Get: 183 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB]
Get: 184 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB]
Get: 185 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB]
Get: 186 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get: 187 http://deb.debian.org/debian unstable/main amd64 dh-r all 20231212 [42.2 kB]
Get: 188 http://deb.debian.org/debian unstable/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB]
Get: 189 http://deb.debian.org/debian unstable/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB]
Get: 190 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB]
Get: 191 http://deb.debian.org/debian unstable/main amd64 r-cran-curl amd64 5.2.3+dfsg-1 [178 kB]
Get: 192 http://deb.debian.org/debian unstable/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB]
Get: 193 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB]
Get: 194 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB]
Get: 195 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get: 196 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB]
Get: 197 http://deb.debian.org/debian unstable/main amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [401 kB]
Get: 198 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB]
Get: 199 http://deb.debian.org/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB]
Get: 200 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB]
Get: 201 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get: 202 http://deb.debian.org/debian unstable/main amd64 r-cran-httr2 all 1.0.5-1 [654 kB]
Get: 203 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB]
Fetched 111 MB in 9s (12.4 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package tzdata.
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(Reading database ... 19965 files and directories currently installed.)
Preparing to unpack .../000-tzdata_2024b-4_all.deb ...
Unpacking tzdata (2024b-4) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-6) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-6_amd64.deb ...
Unpacking procps (2:4.0.4-6) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../003-readline-common_8.2-5_all.deb ...
Unpacking readline-common (8.2-5) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package openssl.
Preparing to unpack .../005-openssl_3.3.2-2_amd64.deb ...
Unpacking openssl (3.3.2-2) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../006-ca-certificates_20240203_all.deb ...
Unpacking ca-certificates (20240203) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../009-file_1%3a5.45-3+b1_amd64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../010-gettext-base_0.22.5-2_amd64.deb ...
Unpacking gettext-base (0.22.5-2) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../012-groff-base_1.23.0-6_amd64.deb ...
Unpacking groff-base (1.23.0-6) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../013-bsdextrautils_2.40.2-12_amd64.deb ...
Unpacking bsdextrautils (2.40.2-12) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../015-man-db_2.13.0-1_amd64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../016-ucf_3.0045_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0045) ...
Selecting previously unselected package m4.
Preparing to unpack .../017-m4_1.4.19-4_amd64.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../018-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../019-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
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Current default time zone: 'Etc/UTC'
Local time is now:      Wed Dec 11 00:58:48 UTC 2024.
Universal Time is now:  Wed Dec 11 00:58:48 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ...
Setting up libtool (2.4.7-8) ...
Setting up fontconfig-config (2.15.0-1.1+b1) ...
Setting up libpng-dev:amd64 (1.6.44-2) ...
Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b2) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ...
Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ...
Setting up pkgconf:amd64 (1.8.1-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-2+b1) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up liblapack-dev:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up ucf (3.0045) ...
Setting up libreadline8t64:amd64 (8.2-5) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up xauth (1:1.1.2-1.1) ...
Setting up groff-base (1.23.0-6) ...
Setting up libharfbuzz0b:amd64 (10.1.0-1) ...
Setting up libxss1:amd64 (1:1.2.3-1+b2) ...
Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up gfortran-14 (14.2.0-8) ...
Setting up libsm6:amd64 (2:1.2.4-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:amd64 (1.1.29+b2) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.15.0-1.1+b1) ...
Regenerating fonts cache... done.
Setting up libxft2:amd64 (2.3.6-1+b2) ...
Setting up libcurl4t64:amd64 (8.11.0-1) ...
Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:amd64 (8.6.15-1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ...
Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ...
Setting up libwww-curl-perl:amd64 (4.17-11) ...
Setting up libpaper-utils (1.1.29+b2) ...
Setting up libreadline-dev:amd64 (8.2-5) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ...
Setting up gfortran (4:14.2.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:amd64 (1.18.2-2) ...
Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ...
Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.20) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.4.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b4) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up libb-hooks-endofscope-perl (0.28-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-filelock (1.0.3-1) ...
Setting up r-cran-curl (5.2.3+dfsg-1) ...
Setting up r-cran-rlang (1.1.4-1) ...
Setting up r-base-dev (4.4.2-1) ...
Setting up r-cran-sys (3.4.3-1) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up libmoose-perl:amd64 (2.2207-1+b2) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-cli (3.6.3-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-askpass (1.2.1-1) ...
Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-openssl (2.2.0+dfsg-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-cran-httr2 (1.0.5-1) ...
Setting up dh-r (20231212) ...
Processing triggers for libc-bin (2.40-4) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/r-bioc-gypsum-1.2.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../r-bioc-gypsum_1.2.0+ds-1_source.changes
dpkg-buildpackage: info: source package r-bioc-gypsum
dpkg-buildpackage: info: source version 1.2.0+ds-1
dpkg-buildpackage: info: source distribution experimental
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-gypsum/ -O--buildsystem=R
I: R Package: gypsum Version: 1.2.0
I: Building using R version 4.4.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 26 Nov 2024 09:35:01 +0100
	mkdir -p /build/reproducible-path/r-bioc-gypsum-1.2.0\+ds/debian/r-bioc-gypsum/usr/lib/R/site-library
	R CMD INSTALL -l /build/reproducible-path/r-bioc-gypsum-1.2.0\+ds/debian/r-bioc-gypsum/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 26 Nov 2024 09:35:01 +0100'"
* installing *source* package 'gypsum' ...
file 'inst/doc/userguide.html' is missing
files 'DESCRIPTION', 'R/validateMetadata.R', 'tests/testthat/test-metadata.R' have the wrong MD5 checksums
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gypsum)
	rm -f /build/reproducible-path/r-bioc-gypsum-1.2.0\+ds/debian/r-bioc-gypsum/usr/lib/R/site-library/gypsum/LICENSE
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-digest for Suggests:digest
I: Using r-cran-dbi for Suggests:DBI
I: Using r-cran-rsqlite for Suggests:RSQLite
I: Using r-bioc-s4vectors for Suggests:S4Vectors
I: Using r-cran-httr2 for Imports:httr2
I: Using r-cran-jsonlite for Imports:jsonlite
I: Using r-cran-filelock for Imports:filelock
I: Using r-cran-rappdirs for Imports:rappdirs
I: BioConductor API version: r-api-bioc-3.20
I: Use r-bioc-gypsum as Debian binary package for variables substitution
   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installsystemduser -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   dh_fixperms -O--buildsystem=R
   dh_missing -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-gypsum' in '../r-bioc-gypsum_1.2.0+ds-1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo
 dpkg-genchanges --build=binary -O../r-bioc-gypsum_1.2.0+ds-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2470959 and its subdirectories
I: Current time: Tue Dec 10 13:00:02 -12 2024
I: pbuilder-time-stamp: 1733878802
Wed Dec 11 01:00:03 UTC 2024  I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net.
Wed Dec 11 01:00:03 UTC 2024  I: Preparing to do remote build '2' on ionos15-amd64.debian.net.
Wed Dec 11 01:01:16 UTC 2024  I: Deleting $TMPDIR on ionos15-amd64.debian.net.
Wed Dec 11 01:01:16 UTC 2024  I: r-bioc-gypsum_1.2.0+ds-1_amd64.changes:
Format: 1.8
Date: Tue, 26 Nov 2024 09:35:01 +0100
Source: r-bioc-gypsum
Binary: r-bioc-gypsum
Architecture: all
Version: 1.2.0+ds-1
Distribution: experimental
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 r-bioc-gypsum - Interface to the gypsum REST API
Changes:
 r-bioc-gypsum (1.2.0+ds-1) experimental; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.7.0 (routine-update)
   * Refreshed the jsonvalidate avoidance patch.
   * dh-update-R to update Build-Depends (routine-update)
Checksums-Sha1:
 9f7525277d926a8861571116fe452e9661b36911 215172 r-bioc-gypsum_1.2.0+ds-1_all.deb
 a101f5166e170818e78e4f0d2ac228ce40af9a26 10398 r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo
Checksums-Sha256:
 c01fd485f292fc48a41b9b050293edc2580b66681436908292cbe3a21e108bed 215172 r-bioc-gypsum_1.2.0+ds-1_all.deb
 b3a538824c378b427a156534491a30d9d3024586b39973496b7c77537993a244 10398 r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo
Files:
 2a03a679d967f2e655d7ab8378ef5251 215172 gnu-r optional r-bioc-gypsum_1.2.0+ds-1_all.deb
 ebd1dfa18d5378ad7a281894afc04117 10398 gnu-r optional r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo
Wed Dec 11 01:01:17 UTC 2024  I: diffoscope 284 will be used to compare the two builds:
Running as unit: rb-diffoscope-amd64_11-38365.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.wKNjcFyU/r-bioc-gypsum_1.2.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.wKNjcFyU/r-bioc-gypsum_1.2.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.wKNjcFyU/r-bioc-gypsum_1.2.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.wKNjcFyU/b1/r-bioc-gypsum_1.2.0+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.wKNjcFyU/b2/r-bioc-gypsum_1.2.0+ds-1_amd64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.338s)
       0.338s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.017s)
       0.017s     12 calls    diffoscope.comparators.binary.FilesystemFile

## specialize (total time: 0.000s)
       0.000s      1 call     specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 646ms
CPU time consumed: 646ms
Wed Dec 11 01:02:17 UTC 2024  I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists.
Wed Dec 11 01:02:17 UTC 2024  I: r-bioc-gypsum from experimental built successfully and reproducibly on amd64.
Wed Dec 11 01:02:18 UTC 2024  I: Submitting .buildinfo files to external archives:
Wed Dec 11 01:02:18 UTC 2024  I: Submitting 12K	b1/r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo.asc
Wed Dec 11 01:02:23 UTC 2024  I: Submitting 12K	b2/r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo.asc
Wed Dec 11 01:02:35 UTC 2024  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Dec 11 01:02:35 UTC 2024  I: Done submitting .buildinfo files.
Wed Dec 11 01:02:35 UTC 2024  I: Removing signed r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo.asc files:
removed './b1/r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo.asc'
removed './b2/r-bioc-gypsum_1.2.0+ds-1_amd64.buildinfo.asc'