Mon Dec 2 09:51:29 UTC 2024 I: starting to build r-bioc-dropletutils/experimental/amd64 on jenkins on '2024-12-02 09:51' Mon Dec 2 09:51:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/40981/console.log Mon Dec 2 09:51:29 UTC 2024 I: Downloading source for experimental/r-bioc-dropletutils=1.26.0+ds-1 --2024-12-02 09:51:29-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-dropletutils/r-bioc-dropletutils_1.26.0%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2607 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-dropletutils_1.26.0+ds-1.dsc’ 0K .. 100% 339M=0s 2024-12-02 09:51:29 (339 MB/s) - ‘r-bioc-dropletutils_1.26.0+ds-1.dsc’ saved [2607/2607] Mon Dec 2 09:51:29 UTC 2024 I: r-bioc-dropletutils_1.26.0+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-dropletutils Binary: r-bioc-dropletutils Architecture: any Version: 1.26.0+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/DropletUtils/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-dropletutils Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-dropletutils.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-cran-matrix, r-cran-rcpp, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-sparsearray (>= 1.5.18), r-bioc-delayedarray (>= 0.31.9), r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-rhdf5, r-bioc-edger, r-cran-r.utils, r-cran-dqrng, r-bioc-beachmat, r-bioc-scuttle, r-bioc-rhdf5lib, r-cran-bh, libhdf5-dev, libpcg-cpp-dev, architecture-is-64-bit Package-List: r-bioc-dropletutils deb gnu-r optional arch=any Checksums-Sha1: c70c1a234685d149c5c996e656c6ae6ff86e59f7 85496 r-bioc-dropletutils_1.26.0+ds.orig.tar.xz 3d386e2918e7d58ab01d3b6fb398095f494dc69a 3844 r-bioc-dropletutils_1.26.0+ds-1.debian.tar.xz Checksums-Sha256: 6c2680613b020a8510ac147e043c5584ba9d4e541bf326eaffbd87f2b70a052a 85496 r-bioc-dropletutils_1.26.0+ds.orig.tar.xz 50da4810c409e9b764734f60e3a51a1e850fd621c3db534847c7558942bba48a 3844 r-bioc-dropletutils_1.26.0+ds-1.debian.tar.xz Files: c747698dad540046a23519af1f086a87 85496 r-bioc-dropletutils_1.26.0+ds.orig.tar.xz 70f166cd9899b03bcd810f023c8c68e2 3844 r-bioc-dropletutils_1.26.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdJr3cSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+bi/hwQAJyepJB0j/Ux/vzd9L9LAIISLH3cBeJU 0K18UN61KnsP2/WfuI2pZBIh4ZapJfw5EmondXwIUGfr0Ssh9IpeHATa+QNt1STp 0JOCYg52LvkRFwNgg1hlzC1bpz0ajZ7Foky8zw4ezUFfKR0VNfPKWk+YGS4d/lcU mMtX8X4ia23SGD+GO50Boa3wPmAZ39c5/qvXrd1tVSFaF1J8MBFlddvP7InCAB3w /CnW7UdUV8vPAXhLBhhPpm6vRdC/PtYp47xgmC4rDh08ZC4yOKPBXacCi6rf+0Id nZR/OnARLTljF2kc+JqrNGq4ZzDRJcBvuQiDzt93YPsnb6QgeZh3xYNBFYvsH3RB qts4m+7MzERiF9AlhOlZZ2uy6pMPyVWQvF0LqoSjKXpNRN9Xlwrd6DIffcr0DOdm QqSdrJIo8eqSRUYhfe13QRU9dtkBY5BbNumT1Thj8yK18C0rWnt/Klse1oF7nmVY N/XIkfLulq2A+FLTa/QGSnfG3FGIpk3rNgq5MAvvRMXIeqAtQ6/ELebHGs8JWFXf i7958kJ2ku2wfJ3noGZBd2+6HcNF1isOnHMxg8g9fGV4VxRkgNpDTbPT830BjJTw ovobDGrisQognc0FV9TxMbeM0UxuxQcA+EStliLrOw45XVFkWwFfniXeV0E27Luj uhqI/dTfBBWf =gnQd -----END PGP SIGNATURE----- Mon Dec 2 09:51:29 UTC 2024 I: Checking whether the package is not for us Mon Dec 2 09:51:29 UTC 2024 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Dec 2 09:51:29 UTC 2024 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Dec 2 09:51:56 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 4 04:14:29 -12 2026 I: pbuilder-time-stamp: 1767543269 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-dropletutils_1.26.0+ds-1.dsc] I: copying [./r-bioc-dropletutils_1.26.0+ds.orig.tar.xz] I: copying [./r-bioc-dropletutils_1.26.0+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 29 12:11:35 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: issuer "crusoe@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-dropletutils_1.26.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-dropletutils in r-bioc-dropletutils-1.26.0+ds dpkg-source: info: unpacking r-bioc-dropletutils_1.26.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-dropletutils_1.26.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying equal.patch dpkg-source: info: applying use_debian_packaged_libhdf5.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4182378/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1195aad983514354b6bd7a3b91975a43' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4182378' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cf6D575l/pbuilderrc_zjD6 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cf6D575l/b1 --logfile b1/build.log r-bioc-dropletutils_1.26.0+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4182378/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-cran-matrix, r-cran-rcpp, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-sparsearray (>= 1.5.18), r-bioc-delayedarray (>= 0.31.9), r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-rhdf5, r-bioc-edger, r-cran-r.utils, r-cran-dqrng, r-bioc-beachmat, r-bioc-scuttle, r-bioc-rhdf5lib, r-cran-bh, libhdf5-dev, libpcg-cpp-dev, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment; however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sparsearray (>= 1.5.18); however: Package r-bioc-sparsearray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedarray (>= 0.31.9); however: Package r-bioc-delayedarray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedmatrixstats; however: Package r-bioc-delayedmatrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-hdf5array; however: Package r-bioc-hdf5array is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5; however: Package r-bioc-rhdf5 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-edger; however: Package r-bioc-edger is not installed. pbuilder-satisfydepends-dummy depends on r-cran-r.utils; however: Package r-cran-r.utils is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dqrng; however: Package r-cran-dqrng is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-beachmat; however: Package r-bioc-beachmat is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-scuttle; however: Package r-bioc-scuttle is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5lib; however: Package r-bioc-rhdf5lib is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libpcg-cpp-dev; however: Package libpcg-cpp-dev is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldap-dev{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcg-cpp-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-edger{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-hdf5array{a} r-bioc-iranges{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-scuttle{a} r-bioc-singlecellexperiment{a} r-bioc-sparsearray{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-bh{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dqrng{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-littler{a} r-cran-locfit{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pkgkitten{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-sitmo{a} r-cran-snow{a} r-cran-statmod{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-bench r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc r-cran-digest r-cran-ggplot2 r-cran-glue r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-lobstr r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-mvtnorm r-cran-png r-cran-progress r-cran-r.devices r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-rstudioapi r-cran-scales r-cran-sf r-cran-shiny r-cran-sodium r-cran-spelling r-cran-survival r-cran-testit r-cran-testthat r-cran-tibble r-cran-vctrs r-cran-webutils r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 288 newly installed, 0 to remove and 0 not upgraded. Need to get 193 MB of archives. After unpacking 654 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-sparsearray (>= 1.5.18) but 1.4.8+dfsg-1 is to be installed Depends: r-bioc-delayedarray (>= 0.31.9) but 0.30.1+dfsg-1 is to be installed Unable to resolve dependencies! Giving up... The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldap-dev{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcg-cpp-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-edger{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-hdf5array{a} r-bioc-iranges{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-scuttle{a} r-bioc-singlecellexperiment{a} r-bioc-sparsearray{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-bh{a} r-cran-codetools{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dqrng{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-littler{a} r-cran-locfit{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pkgkitten{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-sitmo{a} r-cran-snow{a} r-cran-statmod{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-bench r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc r-cran-digest r-cran-ggplot2 r-cran-glue r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-lobstr r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-mvtnorm r-cran-png r-cran-progress r-cran-r.devices r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-rstudioapi r-cran-scales r-cran-sf r-cran-shiny r-cran-sodium r-cran-spelling r-cran-survival r-cran-testit r-cran-testthat r-cran-tibble r-cran-vctrs r-cran-webutils r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 288 newly installed, 0 to remove and 0 not upgraded. Need to get 193 MB of archives. After unpacking 654 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4182378 and its subdirectories Mon Dec 2 09:51:56 UTC 2024 W: No second build log, what happened? Mon Dec 2 09:51:56 UTC 2024 W: Downloading the build dependencies failed Mon Dec 2 09:51:56 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Dec 2 09:51:56 UTC 2024 W: Network problems are automatically rescheduled after some hours.