Thu Jul 2 10:37:54 UTC 2020 I: starting to build tree-puzzle/buster/i386 on jenkins on '2020-07-02 10:37' Thu Jul 2 10:37:54 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/2529/console.log Thu Jul 2 10:37:54 UTC 2020 I: Downloading source for buster/tree-puzzle=5.2-11 --2020-07-02 10:37:54-- http://deb.debian.org/debian/pool/main/t/tree-puzzle/tree-puzzle_5.2-11.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2137 (2.1K) Saving to: ‘tree-puzzle_5.2-11.dsc’ 0K .. 100% 208M=0s 2020-07-02 10:37:54 (208 MB/s) - ‘tree-puzzle_5.2-11.dsc’ saved [2137/2137] Thu Jul 2 10:37:54 UTC 2020 I: tree-puzzle_5.2-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tree-puzzle Binary: tree-puzzle, tree-ppuzzle, tree-puzzle-doc Architecture: any all Version: 5.2-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Charles Plessy Homepage: http://www.tree-puzzle.de Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/tree-puzzle Vcs-Git: https://salsa.debian.org/med-team/tree-puzzle.git Build-Depends: debhelper (>= 11~), libopenmpi-dev, libsprng2-dev Package-List: tree-ppuzzle deb science optional arch=any tree-puzzle deb science optional arch=any tree-puzzle-doc deb doc optional arch=all Checksums-Sha1: fd52a9f04dc871b765d9f7464f68bdb8edc22e37 875142 tree-puzzle_5.2.orig.tar.gz ea4dd9256880f32c8eb246a43462220f71d387a6 67040 tree-puzzle_5.2-11.debian.tar.xz Checksums-Sha256: 3396d3b80b03b0600afb479dc33f0bd3e5631298337295a4fa454211ac44c3fb 875142 tree-puzzle_5.2.orig.tar.gz f0e786507c3fdcc5c6650a517548515d947a9c6e001eab5f6b9f2dfb27958133 67040 tree-puzzle_5.2-11.debian.tar.xz Files: 20fa9606434ddc789670e681d98fe68f 875142 tree-puzzle_5.2.orig.tar.gz 6b64109d321dcecce5cb5eeec408e613 67040 tree-puzzle_5.2-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvFqzwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFzJw/+JvW6xyLIofVKBChqCwWyPJcvgDUJO44F LVwKIaA6Z4acSFxdbQLyyPm1WgJ8XTaf8mSsA3Lk/HH5UjVyupPOM50S/FM5YBEm zeBY9+Ev2oghMJWgUWK8i+v9BQss19ILmaA0ihxEM2364e81I3cuIkOR83bcmqUT BLAi59j/bTwtOvjQsx30HNMrb/KYUOxqXi6N1nLTU0+rhRJRIEJsBpWyA66ZKKRp 8sY2D1ambdzmOTTjTntdQb4JySxmzcVBY8jtMbhKvIqDzH1RCHXHqf5E6r2cFu/5 R6hZu/EKe9277UI8jnVedJZ3tlSEcrWmxmlESEFKD8G7tXUnmXcO92FgYborOq4l spYHRO3C6dn72Oprd4bfL7n6DMUwgiFbswmSshqG4DgyvvjeeOc6lRn9TKzGr+bA 6JgB1XYBfAkq0Idj7YsCyuTqC9XvqlMPNldYqLcixbSnr1MkMxcih71DsGQR6d5D 0b4N1j+6BhHJ+OfFgFrA0r6wPP64VVWqOoi4xFTNriD6KCpn/v4OioQrZ5oki67o yGVNaDWBFpMDQV2JDd90M1HN7wnI+7KySPlbmluScldTNPMcKkjjq4wjqdbsSohs rnRNzTEhKNAYbyf5Uq1eYOw+njDCqBW34erBy0u7GldUqvAqNp8odhzTjAcs0J/Z KUoRYmMizsQ= =YrzR -----END PGP SIGNATURE----- Thu Jul 2 10:37:54 UTC 2020 I: Checking whether the package is not for us Thu Jul 2 10:37:54 UTC 2020 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Thu Jul 2 10:37:54 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Thu Jul 2 10:43:34 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 1 22:37:57 -12 2020 I: pbuilder-time-stamp: 1593686277 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tree-puzzle_5.2-11.dsc] I: copying [./tree-puzzle_5.2.orig.tar.gz] I: copying [./tree-puzzle_5.2-11.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 15 21:11:24 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tree-puzzle_5.2-11.dsc dpkg-source: info: extracting tree-puzzle in tree-puzzle-5.2 dpkg-source: info: unpacking tree-puzzle_5.2.orig.tar.gz dpkg-source: info: unpacking tree-puzzle_5.2-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_no_copy_of_sprng.patch dpkg-source: info: applying tests-need-bash.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10546/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='d5bb841084824b418631ff5a22953eaf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10546' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.j8G3ZxSUop/pbuilderrc_IfYz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.j8G3ZxSUop/b1 --logfile b1/build.log tree-puzzle_5.2-11.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux profitbricks-build12-i386 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) i686 GNU/Linux I: ls -l /bin total 5480 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 1 20:25 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/10546/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libopenmpi-dev, libsprng2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libsprng2-dev; however: Package libsprng2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libpsm-infinipath1{a} librdmacm1{a} libsigsegv2{a} libsprng2{a} libsprng2-dev{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 31.3 MB of archives. After unpacking 113 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 14 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 17 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 19 http://deb.debian.org/debian buster/main i386 openssh-client i386 1:7.9p1-10+deb10u2 [834 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 21 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 22 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 23 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 24 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 25 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 27 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 30 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 32 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 38 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 39 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 40 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 41 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libnl-3-200 i386 3.4.0-1 [65.8 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libnl-route-3-200 i386 3.4.0-1 [170 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libibverbs1 i386 22.1-1 [53.9 kB] Get: 45 http://deb.debian.org/debian buster/main i386 ibverbs-providers i386 22.1-1 [201 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libevent-2.1-6 i386 2.1.8-stable-4 [191 kB] Get: 47 http://deb.debian.org/debian buster/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4 [137 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4 [48.1 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6 [178 kB] Get: 50 http://deb.debian.org/debian buster/main i386 librdmacm1 i386 22.1-1 [68.8 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libfabric1 i386 1.6.2-3 [364 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libgmpxx4ldbl i386 2:6.1.2+dfsg-4 [23.2 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libgmp-dev i386 2:6.1.2+dfsg-4 [648 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 56 http://deb.debian.org/debian buster/main i386 libnuma1 i386 2.0.12-1 [27.7 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libhwloc5 i386 1.11.12-3 [119 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libnuma-dev i386 2.0.12-1 [40.9 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libltdl-dev i386 2.4.6-9 [164 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libhwloc-dev i386 1.11.12-3 [185 kB] Get: 61 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] Get: 62 http://deb.debian.org/debian buster/main i386 ocl-icd-libopencl1 i386 2.2.12-2 [37.2 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libhwloc-plugins i386 1.11.12-3 [17.8 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libnl-3-dev i386 3.4.0-1 [107 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libnl-route-3-dev i386 3.4.0-1 [193 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libibverbs-dev i386 22.1-1 [385 kB] Get: 67 http://deb.debian.org/debian buster/main i386 libpmix2 i386 3.1.2-3 [541 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libopenmpi3 i386 3.1.3-11 [2236 kB] Get: 69 http://deb.debian.org/debian buster/main i386 openmpi-common all 3.1.3-11 [165 kB] Get: 70 http://deb.debian.org/debian buster/main i386 openmpi-bin i386 3.1.3-11 [200 kB] Get: 71 http://deb.debian.org/debian buster/main i386 libopenmpi-dev i386 3.1.3-11 [963 kB] Get: 72 http://deb.debian.org/debian buster/main i386 libsprng2 i386 2.0a-12 [80.0 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libsprng2-dev i386 2.0a-12 [83.5 kB] Fetched 31.3 MB in 7s (4279 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../11-libedit2_3.1-20181209-1_i386.deb ... Unpacking libedit2:i386 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../12-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../13-libkrb5support0_1.17-3_i386.deb ... Unpacking libkrb5support0:i386 (1.17-3) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../14-libk5crypto3_1.17-3_i386.deb ... Unpacking libk5crypto3:i386 (1.17-3) ... 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Selecting previously unselected package libicu63:i386. Preparing to unpack .../33-libicu63_63.1-6+deb10u1_i386.deb ... Unpacking libicu63:i386 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../34-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../35-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../36-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../37-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../38-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../39-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../40-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libnl-3-200:i386. Preparing to unpack .../41-libnl-3-200_3.4.0-1_i386.deb ... Unpacking libnl-3-200:i386 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-200:i386. Preparing to unpack .../42-libnl-route-3-200_3.4.0-1_i386.deb ... Unpacking libnl-route-3-200:i386 (3.4.0-1) ... Selecting previously unselected package libibverbs1:i386. Preparing to unpack .../43-libibverbs1_22.1-1_i386.deb ... Unpacking libibverbs1:i386 (22.1-1) ... Selecting previously unselected package ibverbs-providers:i386. Preparing to unpack .../44-ibverbs-providers_22.1-1_i386.deb ... Unpacking ibverbs-providers:i386 (22.1-1) ... Selecting previously unselected package libevent-2.1-6:i386. Preparing to unpack .../45-libevent-2.1-6_2.1.8-stable-4_i386.deb ... Unpacking libevent-2.1-6:i386 (2.1.8-stable-4) ... Selecting previously unselected package libevent-core-2.1-6:i386. Preparing to unpack .../46-libevent-core-2.1-6_2.1.8-stable-4_i386.deb ... Unpacking libevent-core-2.1-6:i386 (2.1.8-stable-4) ... Selecting previously unselected package libevent-pthreads-2.1-6:i386. Preparing to unpack .../47-libevent-pthreads-2.1-6_2.1.8-stable-4_i386.deb ... Unpacking libevent-pthreads-2.1-6:i386 (2.1.8-stable-4) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../48-libpsm-infinipath1_3.3+20.604758e7-6_i386.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6) ... Selecting previously unselected package librdmacm1:i386. Preparing to unpack .../49-librdmacm1_22.1-1_i386.deb ... Unpacking librdmacm1:i386 (22.1-1) ... Selecting previously unselected package libfabric1. 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Preparing to unpack .../56-libhwloc5_1.11.12-3_i386.deb ... Unpacking libhwloc5:i386 (1.11.12-3) ... Selecting previously unselected package libnuma-dev:i386. Preparing to unpack .../57-libnuma-dev_2.0.12-1_i386.deb ... Unpacking libnuma-dev:i386 (2.0.12-1) ... Selecting previously unselected package libltdl-dev:i386. Preparing to unpack .../58-libltdl-dev_2.4.6-9_i386.deb ... Unpacking libltdl-dev:i386 (2.4.6-9) ... Selecting previously unselected package libhwloc-dev:i386. Preparing to unpack .../59-libhwloc-dev_1.11.12-3_i386.deb ... Unpacking libhwloc-dev:i386 (1.11.12-3) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../60-libpciaccess0_0.14-1_i386.deb ... Unpacking libpciaccess0:i386 (0.14-1) ... Selecting previously unselected package ocl-icd-libopencl1:i386. Preparing to unpack .../61-ocl-icd-libopencl1_2.2.12-2_i386.deb ... Unpacking ocl-icd-libopencl1:i386 (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:i386. Preparing to unpack .../62-libhwloc-plugins_1.11.12-3_i386.deb ... Unpacking libhwloc-plugins:i386 (1.11.12-3) ... Selecting previously unselected package libnl-3-dev:i386. Preparing to unpack .../63-libnl-3-dev_3.4.0-1_i386.deb ... Unpacking libnl-3-dev:i386 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:i386. Preparing to unpack .../64-libnl-route-3-dev_3.4.0-1_i386.deb ... Unpacking libnl-route-3-dev:i386 (3.4.0-1) ... Selecting previously unselected package libibverbs-dev:i386. Preparing to unpack .../65-libibverbs-dev_22.1-1_i386.deb ... Unpacking libibverbs-dev:i386 (22.1-1) ... Selecting previously unselected package libpmix2:i386. Preparing to unpack .../66-libpmix2_3.1.2-3_i386.deb ... Unpacking libpmix2:i386 (3.1.2-3) ... Selecting previously unselected package libopenmpi3:i386. Preparing to unpack .../67-libopenmpi3_3.1.3-11_i386.deb ... Unpacking libopenmpi3:i386 (3.1.3-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../68-openmpi-common_3.1.3-11_all.deb ... Unpacking openmpi-common (3.1.3-11) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../69-openmpi-bin_3.1.3-11_i386.deb ... Unpacking openmpi-bin (3.1.3-11) ... Selecting previously unselected package libopenmpi-dev:i386. Preparing to unpack .../70-libopenmpi-dev_3.1.3-11_i386.deb ... Unpacking libopenmpi-dev:i386 (3.1.3-11) ... Selecting previously unselected package libsprng2. Preparing to unpack .../71-libsprng2_2.0a-12_i386.deb ... Unpacking libsprng2 (2.0a-12) ... Selecting previously unselected package libsprng2-dev. Preparing to unpack .../72-libsprng2-dev_2.0a-12_i386.deb ... Unpacking libsprng2-dev (2.0a-12) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libkeyutils1:i386 (1.6-6) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:i386 (1.1.1d-0+deb10u3) ... Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up autotools-dev (20180224.1) ... Setting up libgmpxx4ldbl:i386 (2:6.1.2+dfsg-4) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:i386 (1.17-3) ... Setting up libltdl7:i386 (2.4.6-9) ... Setting up libevent-core-2.1-6:i386 (2.1.8-stable-4) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up libevent-2.1-6:i386 (2.1.8-stable-4) ... Setting up libnuma1:i386 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:i386 (2.2.12-2) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libnl-3-200:i386 (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libsprng2 (2.0a-12) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4) ... Setting up libgmp-dev:i386 (2:6.1.2+dfsg-4) ... Setting up libtool (2.4.6-9) ... Setting up libhwloc5:i386 (1.11.12-3) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:i386 (1.11.12-3) ... Setting up libnuma-dev:i386 (2.0.12-1) ... Setting up libnl-route-3-200:i386 (3.4.0-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:i386 (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libsprng2-dev (2.0a-12) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:i386 (22.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:i386 (3.1.2-3) ... Setting up ibverbs-providers:i386 (22.1-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:i386 (3.4.0-1) ... Setting up libltdl-dev:i386 (2.4.6-9) ... Setting up libhwloc-dev:i386 (1.11.12-3) ... Setting up librdmacm1:i386 (22.1-1) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:i386 (22.1-1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libopenmpi3:i386 (3.1.3-11) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (3.1.3-11) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/tree-puzzle-5.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package tree-puzzle dpkg-buildpackage: info: source version 5.2-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --no-parallel dh_auto_clean -O--no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules build dh build --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel configure.ac:27: warning: underquoted definition of AC_TEST_MPICC configure.ac:27: run info Automake 'Extending aclocal' configure.ac:27: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:11: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:11: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:17: installing './compile' src/Makefile.am:45: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' dh_auto_configure -O--no-parallel ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking whether gcc and cc understand -c and -o together... yes checking whether make sets $(MAKE)... (cached) yes checking for mpcc... no checking for hcc... no checking for mpicc... /usr/bin/mpicc checking for mpicc_lam... no checking for mpicc_mpich... no checking for cc... /usr/bin/cc checking whether /usr/bin/mpicc works as MPI compiler... yes checking whether /usr/bin/mpicc handles quotes correctly... yes checking whether gcc handles quotes correctly... yes checking for main in -lm... yes checking for main in -lsprng... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating data/Makefile config.status: creating tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -O--no-parallel make -j1 make[1]: Entering directory '/build/tree-puzzle-5.2' Making all in src make[2]: Entering directory '/build/tree-puzzle-5.2/src' make all-am make[3]: Entering directory '/build/tree-puzzle-5.2/src' gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o sgamma.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o sml1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o sml2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o smlparam.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o smodel1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o smodel2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o spuzzle1.o ./puzzle1.c: In function 'readallquarts': ./puzzle1.c:294:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function 'setoptions': ./puzzle1.c:718:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function 'setfilenames': ./puzzle1.c:5283:28: warning: '%s' directive writing 6 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTFILE ,"%s.%s", FILEPREFIX, OUTFILEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 2055 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5284:28: warning: '%s' directive writing 4 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(TREEFILE ,"%s.%s", FILEPREFIX, TREEFILEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2053 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5285:28: warning: '%s' directive writing 4 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(DISTANCES ,"%s.%s", FILEPREFIX, DISTANCESEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2053 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5286:28: warning: '%s' directive writing 3 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(TRIANGLE ,"%s.%s", FILEPREFIX, TRIANGLEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 2052 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5287:28: warning: '%s' directive writing 5 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(UNRESOLVED ,"%s.%s", FILEPREFIX, UNRESOLVEDEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 2054 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5288:28: warning: '%s' directive writing 8 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(ALLQUART ,"%s.%s", FILEPREFIX, ALLQUARTEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 10 and 2057 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5289:28: warning: '%s' directive writing 10 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(ALLQUARTLH ,"%s.%s", FILEPREFIX, ALLQUARTLHEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 12 and 2059 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5290:28: warning: '%s' directive writing 6 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITELH ,"%s.%s", FILEPREFIX, SITELHEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 2055 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5291:28: warning: '%s' directive writing 7 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITELHB ,"%s.%s", FILEPREFIX, SITELHBEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 2056 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5292:28: warning: '%s' directive writing 8 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITERATE ,"%s.%s", FILEPREFIX, SITERATEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 10 and 2057 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5293:28: warning: '%s' directive writing 9 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITERATEB ,"%s.%s", FILEPREFIX, SITERATEBEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 11 and 2058 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5294:28: warning: '%s' directive writing 5 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTPARAM ,"%s.%s", FILEPREFIX, OUTPARAMEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 2054 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5295:28: warning: '%s' directive writing 10 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SUBSET ,"%s.%s", FILEPREFIX, SUBSETEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 12 and 2059 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5296:28: warning: '%s' directive writing 5 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTPTLIST ,"%s.%s", FILEPREFIX, OUTPTLISTEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 2054 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5297:28: warning: '%s' directive writing 7 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTPTORDER ,"%s.%s", FILEPREFIX, OUTPTORDEREXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 2056 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o spuzzle2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o spstep.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o sutil.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o sconsensus.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o streesort.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o streetest.o gcc -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o -lsprng -lm -o puzzle /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o pgamma.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o pml1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o pml2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o pmlparam.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o pmodel1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o pmodel2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o ppuzzle1.o ./puzzle1.c: In function 'readallquarts': ./puzzle1.c:294:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function 'setoptions': ./puzzle1.c:718:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function 'setfilenames': ./puzzle1.c:5283:28: warning: '%s' directive writing 6 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTFILE ,"%s.%s", FILEPREFIX, OUTFILEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 2055 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5284:28: warning: '%s' directive writing 4 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(TREEFILE ,"%s.%s", FILEPREFIX, TREEFILEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2053 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5285:28: warning: '%s' directive writing 4 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(DISTANCES ,"%s.%s", FILEPREFIX, DISTANCESEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2053 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5286:28: warning: '%s' directive writing 3 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(TRIANGLE ,"%s.%s", FILEPREFIX, TRIANGLEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 2052 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5287:28: warning: '%s' directive writing 5 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(UNRESOLVED ,"%s.%s", FILEPREFIX, UNRESOLVEDEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 2054 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5288:28: warning: '%s' directive writing 8 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(ALLQUART ,"%s.%s", FILEPREFIX, ALLQUARTEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 10 and 2057 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5289:28: warning: '%s' directive writing 10 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(ALLQUARTLH ,"%s.%s", FILEPREFIX, ALLQUARTLHEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 12 and 2059 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5290:28: warning: '%s' directive writing 6 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITELH ,"%s.%s", FILEPREFIX, SITELHEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 2055 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5291:28: warning: '%s' directive writing 7 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITELHB ,"%s.%s", FILEPREFIX, SITELHBEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 2056 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5292:28: warning: '%s' directive writing 8 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITERATE ,"%s.%s", FILEPREFIX, SITERATEEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 10 and 2057 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5293:28: warning: '%s' directive writing 9 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SITERATEB ,"%s.%s", FILEPREFIX, SITERATEBEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 11 and 2058 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5294:28: warning: '%s' directive writing 5 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTPARAM ,"%s.%s", FILEPREFIX, OUTPARAMEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 2054 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5295:28: warning: '%s' directive writing 10 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(SUBSET ,"%s.%s", FILEPREFIX, SUBSETEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 12 and 2059 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5296:28: warning: '%s' directive writing 5 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTPTLIST ,"%s.%s", FILEPREFIX, OUTPTLISTEXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 2054 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:5297:28: warning: '%s' directive writing 7 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] sprintf(OUTPTORDER ,"%s.%s", FILEPREFIX, OUTPTORDEREXT); ^~ In file included from /usr/include/stdio.h:873, from ./puzzle.h:32, from ./puzzle1.c:32: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 2056 bytes into a destination of size 2048 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o ppuzzle2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o ppstep.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./sched.c && mv sched.o psched.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o putil.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o pconsensus.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o ptreesort.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o ptreetest.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ppuzzle.c ./ppuzzle.c: In function 'PP_Update_EEI': ./ppuzzle.c:300:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:302:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:304:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:306:2: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(3, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_Final_Update': ./ppuzzle.c:344:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(DMVector[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:346:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:348:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(fracinv), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:350:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:352:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:354:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:356:2: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(6, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_SendSizes': ./ppuzzle.c:722:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:723:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:725:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_RecvSizes': ./ppuzzle.c:800:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:801:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:803:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_RecvData': ./ppuzzle.c:892:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:894:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:896:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:898:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:900:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:902:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:904:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:906:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:908:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:910:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr[9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:912:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:914:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:916:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_SendData': ./ppuzzle.c:987:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:989:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:991:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:993:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:995:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:997:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:999:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1001:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1003:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1005:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr [9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1007:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1009:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1011:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_SendQuart': ./ppuzzle.c:1153:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1154:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1156:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_RecvQuart': ./ppuzzle.c:1204:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1205:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1207:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_SendQuartBlock': ./ppuzzle.c:1371:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1372:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1374:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1387:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1390:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes + 1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1392:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_RecvQuartBlock': ./ppuzzle.c:1458:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1459:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1461:2: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1489:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1494:2: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1495:2: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_SendAllQuarts': ./ppuzzle.c:1640:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1641:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_RecvAllQuarts': ./ppuzzle.c:1689:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1690:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_SendSplitsBlock': ./ppuzzle.c:1751:5: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(biparts[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1757:5: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address((*pstptr).tree, &(Dtypeaddr[(int)blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1767:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[((int)blocksize + pstnum)])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1769:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)blocksize + pstnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_RecvSplitsBlock': ./ppuzzle.c:1846:5: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&((*bip)[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1852:5: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstarr[n][0]), &(Dtypeaddr[(int)*blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1857:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[(int)*blocksize + pstlistnum])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1859:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)*blocksize + pstlistnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_SendDone': ./ppuzzle.c:2056:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2057:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2059:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function 'PP_RecvDone': ./ppuzzle.c:2176:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2177:3: warning: 'MPI_Address' is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1186:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2179:3: warning: 'MPI_Type_struct' is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1801:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ /usr/bin/mpicc -g -O2 -ffile-prefix-map=/build/tree-puzzle-5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now pgamma.o pml1.o pml2.o pmlparam.o pmodel1.o pmodel2.o ppuzzle1.o ppuzzle2.o ppstep.o psched.o putil.o pconsensus.o ptreesort.o ptreetest.o ppuzzle.o -lsprng -lm -o ppuzzle make[3]: Leaving directory '/build/tree-puzzle-5.2/src' make[2]: Leaving directory '/build/tree-puzzle-5.2/src' Making all in doc make[2]: Entering directory '/build/tree-puzzle-5.2/doc' make[3]: Entering directory '/build/tree-puzzle-5.2/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/tree-puzzle-5.2/doc' make[2]: Leaving directory '/build/tree-puzzle-5.2/doc' Making all in data make[2]: Entering directory '/build/tree-puzzle-5.2/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/tree-puzzle-5.2/data' Making all in tests make[2]: Entering directory '/build/tree-puzzle-5.2/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/tree-puzzle-5.2/tests' make[2]: Entering directory '/build/tree-puzzle-5.2' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/tree-puzzle-5.2' make[1]: Leaving directory '/build/tree-puzzle-5.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/tree-puzzle-5.2' # unfortunately most tests are failing for the moment # the issue is documented in # debian/patches/patch_test_results.patch # and needs to be discussed with upstream dh_auto_test || true make -j1 check VERBOSE=1 make[2]: Entering directory '/build/tree-puzzle-5.2' Making check in src make[3]: Entering directory '/build/tree-puzzle-5.2/src' make[3]: Leaving directory '/build/tree-puzzle-5.2/src' Making check in doc make[3]: Entering directory '/build/tree-puzzle-5.2/doc' make[4]: Entering directory '/build/tree-puzzle-5.2/doc' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/tree-puzzle-5.2/doc' make[3]: Leaving directory '/build/tree-puzzle-5.2/doc' Making check in data make[3]: Entering directory '/build/tree-puzzle-5.2/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/tree-puzzle-5.2/data' Making check in tests make[3]: Entering directory '/build/tree-puzzle-5.2/tests' make check-TESTS make[4]: Entering directory '/build/tree-puzzle-5.2/tests' make[5]: Entering directory '/build/tree-puzzle-5.2/tests' SKIP: build-puzzle FAIL: qp-pure-bin.test FAIL: qp-pure-nucl.test FAIL: qp-tn-nucl.test FAIL: qp-hky-clock-nucl.test FAIL: qp-hky-rhet-nucl.test FAIL: qp-hky-rhet-clock-nucl.test FAIL: qp-pure-prot.test FAIL: qp-mtrev-prot.test FAIL: qp-vt-prot.test FAIL: qp-wag-prot.test FAIL: qp-clock.test FAIL: qp-jtt-prot.test FAIL: qp-jtt-rhet-prot.test FAIL: qp-jtt-rhet-clock-prot.test FAIL: lm-pure-prot.test FAIL: ut-pure-prot.test PASS: cons-pure-prot.test SKIP: build-remark ============================ : tests/test-suite.log ============================ # TOTAL: 19 # PASS: 1 # SKIP: 2 # XFAIL: 0 # FAIL: 16 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 SKIP: build-puzzle ================== SKIP build-puzzle (exit status: 77) FAIL: qp-pure-bin ================= Testing: binary data, quartet puzzling (qp-pure-bin) 171d170 < *...* : 1000 172a172 > *...* : 1000 FAIL qp-pure-bin.test (exit status: 1) FAIL: qp-pure-nucl ================== Testing: nucleotide data, default model, quartet puzzling (qp-pure-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); FAIL qp-pure-nucl.test (exit status: 1) FAIL: qp-tn-nucl ================ Testing: nucleotide data, TN, quartet puzzling (qp-tn-nucl) 24c24 < Transition/transversion parameter (estimated from data set): 1.24 (S.E. 0.40) --- > Transition/transversion parameter (estimated from data set): 1.24 (S.E. 0.61) 102c102 < Thylacinus 0.00000 0.25968 0.22378 0.26 0.26619 0.25302 0.22610 --- > Thylacinus 0.00000 0.25968 0.22378 0.25026 0.26619 0.25302 0.22610 108c108 < Echymipera 0.26 0.27376 0.20328 0.00000 0.30289 0.34430 0.23479 --- > Echymipera 0.25026 0.27376 0.20328 0.00000 0.30289 0.34430 0.23479 113c113 < 0.33 --- > 0.33582 116c116 < Bos 0.24162 0.30169 0.24235 0.27773 0.27782 0.33 0.22749 --- > Bos 0.24162 0.30169 0.24235 0.27773 0.27782 0.33582 0.22749 186c186 < :-----93: --- > :-----94: 193,194c193,194 < :-67: :---Philander < : :-66: --- > :-63: :---Philander > : :-67: 204,205c204,205 < (Thylacinus,(Trichosuru,Phalanger)93,((Sarcophilu,Dasyurus)98, < (Philander,Bos)66,Echymipera)67); --- > (Thylacinus,(Trichosuru,Phalanger)94,((Sarcophilu,Dasyurus)98, > (Philander,Bos)67,Echymipera)63); 215,218c215,218 < *..***** : 981 < ****..** : 929 < *...**.. : 667 < ******.. : 655 --- > *..***** : 979 > ****..** : 935 > ******.. : 666 > *...**.. : 629 224c224 < *...**** : 399 --- > *...**** : 422 229,248c229,248 < ***.**.. : 267 < *..***.. : 153 < *...**.* : 142 < ***.**.* : 113 < *..*..** : 98 < ****..*. : 91 < *.....** : 71 < *....*.. : 69 < ****.... : 61 < *..*.... : 49 < ***.***. : 34 < *..***.* : 34 < ***..... : 32 < ***...** : 26 < *..*..*. : 25 < *.....*. : 24 < *......* : 21 < **..**** : 18 < *...***. : 15 < *..****. : 14 --- > ***.**.. : 271 > *..***.. : 132 > *...**.* : 122 > ***.**.* : 112 > *..*..** : 94 > *.....** : 88 > ****.... : 83 > ****..*. : 79 > *..*.... : 65 > *....*.. : 56 > *..***.* : 49 > ***.***. : 40 > ***..... : 36 > **..**** : 21 > *..*..*. : 21 > *.....*. : 20 > *......* : 19 > *...***. : 17 > ***...** : 13 > ****.**. : 7 250c250 < (3 other less frequent bipartitions not shown) --- > (9 other less frequent bipartitions not shown) 277c277 < Thylacinus 1 0.11472 0.03957 9 0.04 0.03453 --- > Thylacinus 1 0.11472 0.03957 9 0.05924 0.03453 280c280 < Echymipera 4 0.14312 0.04216 12 0.09 0.03071 --- > Echymipera 4 0.14312 0.04216 12 0.05429 0.03071 290c290 < (Thylacinus:0.11472,(Trichosuru:0.10849,Phalanger:0.12332)93:0.04, --- > (Thylacinus:0.11472,(Trichosuru:0.10849,Phalanger:0.12332)94:0.05924, 292c292 < Bos:0.13724)66:0.04411,Echymipera:0.14312)67:0.09); --- > Bos:0.13724)67:0.04411,Echymipera:0.14312)63:0.05429); FAIL qp-tn-nucl.test (exit status: 1) FAIL: qp-hky-clock-nucl ======================= Testing: nucleotide data, HKY, clock, quartet puzzling (qp-hky-clock-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-hky-clock-nucl.test (exit status: 1) FAIL: qp-hky-rhet-nucl ====================== Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling (qp-hky-rhet-nucl) 24c24 < Transition/transversion parameter (estimated from data set): 2.95 (S.E. 0.81) --- > Transition/transversion parameter (estimated from data set): 2.95 (S.E. 0.84) 29c29 < A-G rate: 5.85080 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85080 --- > C-T rate: 5.85063 101,115c101,115 < Thylacinus 0.00000 0.52942 0.37901 0.38 0.58924 0.56152 0.43934 < 0.93 < Sarcophilu 0.52942 0.00000 0.17838 0.62534 0.69895 0.93607 0.62330 < 0.78600 < Dasyurus 0.37901 0.17838 0.00000 0.39034 0.53433 0.60372 0.31920 < 0.22 < Echymipera 0.38 0.62534 0.39034 0.00000 0.70232 0.94287 0.42017 < 0.66066 < Trichosuru 0.58924 0.69895 0.53433 0.70232 0.00000 0.39417 0.70020 < 0.62699 < Phalanger 0.56152 0.93607 0.60372 0.94287 0.39417 0.00000 0.78661 < 0.98926 < Philander 0.43934 0.62330 0.31920 0.42017 0.70020 0.78661 0.00000 < 0.49266 < Bos 0.93 0.78600 0.22 0.66066 0.62699 0.98926 0.49266 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59099 < minimum : 0.17838, maximum : 0.98926 < variance : 0.03, std.dev. : 0.18926 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 139c139 < 8 4.9548 0.1250 --- > 8 4.9547 0.1250 141c141 < Categories 1-8 approximate a continuous Gamma-distribution with expectation 1 --- > Categories 1-8 approximate a continous Gamma-distribution with expectation 1 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,304c300,303 < Thylacinus 1 0.23363 0.10248 9 0.19928 0.09576 < Sarcophilu 2 0.18905 0.06713 10 0.22291 0.13094 < Dasyurus 3 0.00001 0.00158 < Echymipera 4 0.27842 0.11691 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 306,308c305,307 < Phalanger 6 0.27520 0.12613 < Philander 7 0.22534 0.10270 10 iterations until convergence < Bos 8 0.38508 0.14566 log L: -570.33 --- > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)92:0.19928, < (Trichosuru:0.17822,Phalanger:0.27520)86:0.22291,Echymipera:0.27842, < Philander:0.22534,Bos:0.38508); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); FAIL qp-hky-rhet-nucl.test (exit status: 1) FAIL: qp-hky-rhet-clock-nucl ============================ Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling (qp-hky-rhet-clock-nucl) 24c24 < Transition/transversion parameter (estimated from data set): 2.95 (S.E. 0.81) --- > Transition/transversion parameter (estimated from data set): 2.95 (S.E. 0.84) 29c29 < A-G rate: 5.85080 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85080 --- > C-T rate: 5.85063 101,115c101,115 < Thylacinus 0.00000 0.52942 0.37901 0.38 0.58924 0.56152 0.43934 < 0.93 < Sarcophilu 0.52942 0.00000 0.17838 0.62534 0.69895 0.93607 0.62330 < 0.78600 < Dasyurus 0.37901 0.17838 0.00000 0.39034 0.53433 0.60372 0.31920 < 0.22 < Echymipera 0.38 0.62534 0.39034 0.00000 0.70232 0.94287 0.42017 < 0.66066 < Trichosuru 0.58924 0.69895 0.53433 0.70232 0.00000 0.39417 0.70020 < 0.62699 < Phalanger 0.56152 0.93607 0.60372 0.94287 0.39417 0.00000 0.78661 < 0.98926 < Philander 0.43934 0.62330 0.31920 0.42017 0.70020 0.78661 0.00000 < 0.49266 < Bos 0.93 0.78600 0.22 0.66066 0.62699 0.98926 0.49266 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59099 < minimum : 0.17838, maximum : 0.98926 < variance : 0.03, std.dev. : 0.18926 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 139c139 < 8 4.9548 0.1250 --- > 8 4.9547 0.1250 141c141 < Categories 1-8 approximate a continuous Gamma-distribution with expectation 1 --- > Categories 1-8 approximate a continous Gamma-distribution with expectation 1 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,304c300,303 < Thylacinus 1 0.23363 0.10248 9 0.19928 0.09576 < Sarcophilu 2 0.18905 0.06713 10 0.22291 0.13094 < Dasyurus 3 0.00001 0.00158 < Echymipera 4 0.27842 0.11691 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 306,308c305,307 < Phalanger 6 0.27520 0.12613 < Philander 7 0.22534 0.10270 10 iterations until convergence < Bos 8 0.38508 0.14566 log L: -570.33 --- > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)92:0.19928, < (Trichosuru:0.17822,Phalanger:0.27520)86:0.22291,Echymipera:0.27842, < Philander:0.22534,Bos:0.38508); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); 352,353c351,352 < Thylacinus 1 0.29777 0.785 9 0.20357 0.979 < Sarcophilu 2 0.09420 2.007 10 0.22847 0.976 --- > Thylacinus 1 0.29776 0.785 9 0.20356 0.979 > Sarcophilu 2 0.09420 2.007 10 0.22846 0.976 355,359c354,358 < Echymipera 4 0.29777 0.935 < Trichosuru 5 0.23473 0.759 < Phalanger 6 0.23473 1.172 < Philander 7 0.29777 0.757 16 iterations until convergence < Bos 8 0.29777 1.293 log L: -573.89 --- > Echymipera 4 0.29776 0.935 > Trichosuru 5 0.23472 0.759 > Phalanger 6 0.23472 1.172 > Philander 7 0.29776 0.757 16 iterations until convergence > Bos 8 0.29776 1.293 log L: -573.89 362c361 < 0.23473 0.07631 10 5 6 --- > 0.23472 0.07631 10 5 6 364,365c363,364 < 0.29777 0.05401 10 4 7 8 1 9 < 0.38048 0.07031 of root at branch 10 --- > 0.29776 0.05401 10 4 7 8 1 9 > 0.38047 0.07031 of root at branch 10 371,373c370,372 < ((Trichosuru:0.23473,Phalanger:0.23473)86:0.14576,(Echymipera:0.29777, < Philander:0.29777,Bos:0.29777,Thylacinus:0.29777,(Sarcophilu:0.09420, < Dasyurus:0.09420)92:0.20357):0.08271); --- > ((Trichosuru:0.23472,Phalanger:0.23472)87:0.14575,(Echymipera:0.29776, > Philander:0.29776,Bos:0.29776,Thylacinus:0.29776,(Sarcophilu:0.09420, > Dasyurus:0.09420)90:0.20356):0.08271); 383c382 < Critical significance level: 30.98% --- > Critical significance level: 30.97% FAIL qp-hky-rhet-clock-nucl.test (exit status: 1) FAIL: qp-pure-prot ================== Testing: protein data, default model, quartet puzzling (qp-pure-prot) 177,185c177,185 < :---GLB5_PETMA < :-56: < :100: :---LGB2_LUPLU < : : < :100: :-------MYG_PHYCA < : : < : : :---HBA_HUMAN < : :----100: < : :---HBA_HORSE --- > :---HBA_HUMAN > :----100: > : :---HBA_HORSE > :100: > : : :---GLB5_PETMA > : : :-54: > : :100: :---LGB2_LUPLU > : : > : :-------MYG_PHYCA 194,195c194,195 < (HBB_HUMAN,(((GLB5_PETMA,LGB2_LUPLU)56,MYG_PHYCA)100,(HBA_HUMAN, < HBA_HORSE)100)100,HBB_HORSE); --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,((GLB5_PETMA,LGB2_LUPLU)54, > MYG_PHYCA)100)100,HBB_HORSE); 205,206d204 < ****... : 1000 < **..*** : 1000 208c206,208 < *****.. : 563 --- > **..*** : 1000 > ****... : 1000 > *****.. : 544 219,220c219,220 < ****..* : 221 < ****.*. : 216 --- > ****.*. : 234 > ****..* : 222 229,233c229,231 < :------6 GLB5_PETMA < :---8 < : :----------------7 LGB2_LUPLU < :-----9 < : :-------------5 MYG_PHYCA --- > :-3 HBA_HUMAN > :----8 > : :-4 HBA_HORSE 235,237c233,237 < : : :-3 HBA_HUMAN < : :---10 < : :-4 HBA_HORSE --- > : : :------6 GLB5_PETMA > : : :---9 > : : : :----------------7 LGB2_LUPLU > : :----10 > : :-------------5 MYG_PHYCA 245,251c245,251 < HBB_HUMAN 1 0.04915 0.03158 8 0.18155 0.13086 < HBB_HORSE 2 0.12604 0.03871 9 0.34694 0.12 < HBA_HUMAN 3 0.02555 0.02185 10 0.28345 0.08777 < HBA_HORSE 4 0.09 0.03153 11 0.60239 0.11261 < MYG_PHYCA 5 1.33162 0.21116 < GLB5_PETMA 6 0.57465 0.13843 10 iterations until convergence < LGB2_LUPLU 7 1.71330 0.27644 log L: -1699.00 --- > HBB_HUMAN 1 0.04915 0.03158 8 0.28345 0.08777 > HBB_HORSE 2 0.12603 0.03871 9 0.18154 0.13086 > HBA_HUMAN 3 0.02555 0.02185 10 0.34694 0.12552 > HBA_HORSE 4 0.09542 0.03153 11 0.60239 0.11261 > MYG_PHYCA 5 1.33166 0.21117 > GLB5_PETMA 6 0.57466 0.13843 10 iterations until convergence > LGB2_LUPLU 7 1.71333 0.27645 log L: -1699.00 257,259c257,259 < (HBB_HUMAN:0.04915,(((GLB5_PETMA:0.57465,LGB2_LUPLU:1.71330)56:0.18155, < MYG_PHYCA:1.33162)100:0.34694,(HBA_HUMAN:0.02555,HBA_HORSE:0.09) < 100:0.28345)100:0.60239,HBB_HORSE:0.12604); --- > (HBB_HUMAN:0.04915,((HBA_HUMAN:0.02555,HBA_HORSE:0.09542)100:0.28345, > ((GLB5_PETMA:0.57466,LGB2_LUPLU:1.71333)54:0.18154,MYG_PHYCA:1.33166) > 100:0.34694)100:0.60239,HBB_HORSE:0.12603); FAIL qp-pure-prot.test (exit status: 1) FAIL: qp-mtrev-prot =================== Testing: protein data, mtREV, quartet puzzling (qp-mtrev-prot) 107c107 < HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55 3.05140 --- > HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55582 3.05140 109c109 < GLB5_PETMA 2.15305 2.18071 1.43785 1.55 2.62256 0.00000 2.97722 --- > GLB5_PETMA 2.15305 2.18071 1.43785 1.55582 2.62256 0.00000 2.97722 183c183 < : :-96:---GLB5_PETMA --- > : :-97:---GLB5_PETMA 194c194 < (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)96)100, --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)97)100, 205d204 < **..*** : 1000 207c206,207 < ****... : 959 --- > **..*** : 1000 > ****... : 971 213c213 < *****.. : 444 --- > ****.*. : 462 218,221c218,222 < ****.*. : 442 < ****..* : 113 < **..*.. : 24 < **..*.* : 18 --- > *****.. : 436 > ****..* : 100 > **..*.* : 15 > **..*.. : 14 > **....* : 2 259c260 < (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)96:0.34149) --- > (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)97:0.34149) FAIL qp-mtrev-prot.test (exit status: 1) FAIL: qp-vt-prot ================ Testing: protein data, VT, quartet puzzling (qp-vt-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 246c246 < HBA_HUMAN 3 0.03150 0.02213 10 0.96 0.10035 --- > HBA_HUMAN 3 0.03150 0.02213 10 0.54296 0.10035 257c257 < 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.96, --- > 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.54296, FAIL qp-vt-prot.test (exit status: 1) FAIL: qp-wag-prot ================= Testing: protein data, WAG, quartet puzzling (qp-wag-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 244c244 < HBB_HUMAN 1 0.08 0.03102 8 0.44299 0.11946 --- > HBB_HUMAN 1 0.05028 0.03102 8 0.44299 0.11946 256c256 < (HBB_HUMAN:0.08,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) --- > (HBB_HUMAN:0.05028,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) FAIL qp-wag-prot.test (exit status: 1) FAIL: qp-clock ============== Testing: default data, default model, clock, quartet puzzling (qp-clock) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-clock.test (exit status: 1) FAIL: qp-jtt-prot ================= Testing: protein data, JTT, quartet puzzling (qp-jtt-prot) 106,107c106,107 < HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.26 2.51688 < HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47 --- > HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.25126 2.51688 > HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47562 109,110c109,110 < GLB5_PETMA 1.74159 1.75271 1.26 1.34817 2.04426 0.00000 2.23399 < LGB2_LUPLU 2.60857 2.65715 2.51688 2.47 2.69086 2.23399 0.00000 --- > GLB5_PETMA 1.74159 1.75271 1.25126 1.34817 2.04426 0.00000 2.23399 > LGB2_LUPLU 2.60857 2.65715 2.51688 2.47562 2.69086 2.23399 0.00000 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < *****.. : 396 --- > *****.. : 393 218,219c218,219 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 245c245 < HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08 --- > HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08572 FAIL qp-jtt-prot.test (exit status: 1) FAIL: qp-jtt-rhet-prot ====================== Testing: protein data, JTT, rate heterogeneity, quartet puzzling (qp-jtt-rhet-prot) 135c135 < Categories 1-8 approximate a continuous Gamma-distribution with expectation 1 --- > Categories 1-8 approximate a continous Gamma-distribution with expectation 1 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 270c270 < HBB_HUMAN 1 0.04933 0.03410 8 0.50700 0.17282 --- > HBB_HUMAN 1 0.04933 0.03409 8 0.50700 0.17281 FAIL qp-jtt-rhet-prot.test (exit status: 1) FAIL: qp-jtt-rhet-clock-prot ============================ Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling (qp-jtt-rhet-clock-prot) 135c135 < Categories 1-8 approximate a continuous Gamma-distribution with expectation 1 --- > Categories 1-8 approximate a continous Gamma-distribution with expectation 1 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 270c270 < HBB_HUMAN 1 0.04933 0.03410 8 0.50700 0.17282 --- > HBB_HUMAN 1 0.04933 0.03409 8 0.50700 0.17281 316c316 < HBB_HUMAN 1 0.08775 0. 8 0.58020 0.874 --- > HBB_HUMAN 1 0.08775 0.562 8 0.58020 0.874 FAIL qp-jtt-rhet-clock-prot.test (exit status: 1) FAIL: lm-pure-prot ================== Testing: protein data, default model, likelihood mapping (lm-pure-prot) 148c148 < Number of quartets in region 1: 17 (= 48.6%) --- > Number of quartets in region 1: 14 (= 40.0%) 150c150 < Number of quartets in region 3: 7 (= 20.0%) --- > Number of quartets in region 3: 10 (= 28.6%) 165,167c165,167 < Number of quartets in region 1: 16 (= 45.7%) left: 7 right: 9 < Number of quartets in region 2: 9 (= 25.7%) bottom: 3 top: 6 < Number of quartets in region 3: 7 (= 20.0%) bottom: 2 top: 5 --- > Number of quartets in region 1: 12 (= 34.3%) left: 3 right: 9 > Number of quartets in region 2: 11 (= 31.4%) bottom: 3 top: 8 > Number of quartets in region 3: 9 (= 25.7%) bottom: 4 top: 5 FAIL lm-pure-prot.test (exit status: 1) FAIL: ut-pure-prot ================== Testing: protein data, default model, user tree evaluation (ut-pure-prot) 151c151 < HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00163 --- > HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00141 192,193c192,193 < HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13086 < HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12 --- > HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13088 > HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12552 196c196 < GLB5_PETMA 6 0.57473 0.13844 9 iterations until convergence --- > GLB5_PETMA 6 0.57473 0.13845 9 iterations until convergence 231c231 < HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15660 --- > HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15661 289,292c289,292 < 1 -1699.50 0.49 1.0266 0.3220 + 0.4870 + 0.1918 + + < 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3601 + best < 3 -1699.32 0.32 1.3440 0.3930 + 0.4610 + 0.2563 + + < 4 -1699.50 0.49 1.0267 0.2960 + 0.4870 + 0.1918 + + --- > 1 -1699.50 0.49 1.0266 0.3020 + 0.4700 + 0.1881 + + > 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3650 + best > 3 -1699.32 0.32 1.3440 0.4030 + 0.4690 + 0.2588 + + > 4 -1699.50 0.49 1.0267 0.3070 + 0.4700 + 0.1881 + + FAIL ut-pure-prot.test (exit status: 1) SKIP: build-remark ================== *** *** !!! Important remark !!! *** *** Please note that only the output file *.puzzle is checked *** for identity. The overall precision reached in the program *** is heavily dependent on the compiler as well as the optimization *** level (-O) used to compile the executable. *** Hence, even if tests are marked as failed this might just be *** due to differences in less significant digits caused by rounding *** errors from less acurate computations for the sake of faster *** running times. (If you want to be sure about this please refer *** to your compiler's manual!) *** *** Please check the output file differences which are printed during the tests. *** The template files which the results are checked against have been *** generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226 *** and default compiler flags '-g -O2' and using the SPRNG random number *** generator. *** SKIP build-remark (exit status: 77) ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 19 # PASS: 1 # SKIP: 2 # XFAIL: 0 # FAIL: 16 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log ============================================================================ make[5]: *** [Makefile:564: test-suite.log] Error 1 make[5]: Leaving directory '/build/tree-puzzle-5.2/tests' make[4]: *** [Makefile:672: check-TESTS] Error 2 make[4]: Leaving directory '/build/tree-puzzle-5.2/tests' make[3]: *** [Makefile:752: check-am] Error 2 make[3]: Leaving directory '/build/tree-puzzle-5.2/tests' make[2]: *** [Makefile:380: check-recursive] Error 1 make[2]: Leaving directory '/build/tree-puzzle-5.2' dh_auto_test: make -j1 check VERBOSE=1 returned exit code 2 make[1]: Leaving directory '/build/tree-puzzle-5.2' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --no-parallel dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_installdirs -O--no-parallel dh_auto_install -O--no-parallel make -j1 install DESTDIR=/build/tree-puzzle-5.2/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/tree-puzzle-5.2' Making install in src make[2]: Entering directory '/build/tree-puzzle-5.2/src' make[3]: Entering directory '/build/tree-puzzle-5.2/src' /bin/mkdir -p '/build/tree-puzzle-5.2/debian/tmp/usr/bin' /usr/bin/install -c puzzle ppuzzle '/build/tree-puzzle-5.2/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/tree-puzzle-5.2/src' make[2]: Leaving directory '/build/tree-puzzle-5.2/src' Making install in doc make[2]: Entering directory '/build/tree-puzzle-5.2/doc' make[3]: Entering directory '/build/tree-puzzle-5.2/doc' make[4]: Entering directory '/build/tree-puzzle-5.2/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/tree-puzzle-5.2/doc' make[3]: Leaving directory '/build/tree-puzzle-5.2/doc' make[2]: Leaving directory '/build/tree-puzzle-5.2/doc' Making install in data make[2]: Entering directory '/build/tree-puzzle-5.2/data' make[3]: Entering directory '/build/tree-puzzle-5.2/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/tree-puzzle-5.2/data' make[2]: Leaving directory '/build/tree-puzzle-5.2/data' Making install in tests make[2]: Entering directory '/build/tree-puzzle-5.2/tests' make[3]: Entering directory '/build/tree-puzzle-5.2/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/tree-puzzle-5.2/tests' make[2]: Leaving directory '/build/tree-puzzle-5.2/tests' make[2]: Entering directory '/build/tree-puzzle-5.2' make[3]: Entering directory '/build/tree-puzzle-5.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/tree-puzzle-5.2' make[2]: Leaving directory '/build/tree-puzzle-5.2' make[1]: Leaving directory '/build/tree-puzzle-5.2' debian/rules override_dh_install-arch make[1]: Entering directory '/build/tree-puzzle-5.2' dh_install -a # The binary has to be renamed because of the generic name mv `pwd`/debian/tmp/usr/bin/puzzle `pwd`/debian/tree-puzzle/usr/bin/tree-puzzle mv `pwd`/debian/tmp/usr/bin/ppuzzle `pwd`/debian/tree-ppuzzle/usr/bin/tree-ppuzzle make[1]: Leaving directory '/build/tree-puzzle-5.2' dh_install -O--no-parallel -Ntree-puzzle -Ntree-ppuzzle dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installinit -O--no-parallel dh_installmenu -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel debian/rules override_dh_compress make[1]: Entering directory '/build/tree-puzzle-5.2' dh_compress --exclude=.pdf --exclude .phy --exclude trees --exclude .b make[1]: Leaving directory '/build/tree-puzzle-5.2' dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tree-ppuzzle/usr/bin/tree-ppuzzle was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'tree-puzzle-doc' in '../tree-puzzle-doc_5.2-11_all.deb'. dpkg-deb: building package 'tree-ppuzzle-dbgsym' in '../tree-ppuzzle-dbgsym_5.2-11_i386.deb'. dpkg-deb: building package 'tree-puzzle-dbgsym' in '../tree-puzzle-dbgsym_5.2-11_i386.deb'. dpkg-deb: building package 'tree-puzzle' in '../tree-puzzle_5.2-11_i386.deb'. dpkg-deb: building package 'tree-ppuzzle' in '../tree-ppuzzle_5.2-11_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tree-puzzle_5.2-11_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10546 and its subdirectories I: Current time: Wed Jul 1 22:43:33 -12 2020 I: pbuilder-time-stamp: 1593686613 Thu Jul 2 10:43:34 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Thu Jul 2 10:43:34 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Thu Jul 2 10:44:19 UTC 2020 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Thu Jul 2 10:44:19 UTC 2020 I: tree-puzzle_5.2-11_i386.changes: Format: 1.8 Date: Tue, 16 Oct 2018 11:06:43 +0200 Source: tree-puzzle Binary: tree-ppuzzle tree-ppuzzle-dbgsym tree-puzzle tree-puzzle-dbgsym tree-puzzle-doc Architecture: i386 all Version: 5.2-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tree-ppuzzle - Parallelized reconstruction of phylogenetic trees by maximum like tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood tree-puzzle-doc - Reconstruction of phylogenetic trees by maximum likelihood (doc) Changes: tree-puzzle (5.2-11) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Fix some spelling issues Checksums-Sha1: 4f1d54341618ccfdd157c50f48069d6ca37e7751 283300 tree-ppuzzle-dbgsym_5.2-11_i386.deb eb748af0225a49ee7a46ca93a4bc335541921fec 153736 tree-ppuzzle_5.2-11_i386.deb 3cf2b61e3cbe74f571cd255defbf0b9d6cdf168e 238652 tree-puzzle-dbgsym_5.2-11_i386.deb 792a466abe60b2f86dfbb2b1e062a7c2910457ea 401004 tree-puzzle-doc_5.2-11_all.deb 0fe86e4b703c574136b8cb90eeec963e5586ca01 6754 tree-puzzle_5.2-11_i386.buildinfo 12dad80284f1713e9fd078f9ab934c6bd51b99ce 137304 tree-puzzle_5.2-11_i386.deb Checksums-Sha256: 7f7d32998b31a592a73c7c5b6ff6d3a3b625145f2a91785ab1bdc93cedc6b2b9 283300 tree-ppuzzle-dbgsym_5.2-11_i386.deb 0b898429e0612f9688558738d217d96d9c9a917d5e2123a3b610eb005efcac24 153736 tree-ppuzzle_5.2-11_i386.deb d9bacc360690dc13e7b5da727f7f3883eb8c3a5a5888588d025310fe10e7fae2 238652 tree-puzzle-dbgsym_5.2-11_i386.deb f710451fea363461c027a6548d97a8c423cd96856f6282f59a571097d1c96184 401004 tree-puzzle-doc_5.2-11_all.deb fb0891800ab80b3ed39588ebe3d0507573a015e200b4e759ebcba68c876e2147 6754 tree-puzzle_5.2-11_i386.buildinfo 52a21c6495618279dcc112fad2629d3e901227c80af1fb69ecea9574725d5525 137304 tree-puzzle_5.2-11_i386.deb Files: 3be3ef8517a6c458f20ba2bfa78fb9c6 283300 debug optional tree-ppuzzle-dbgsym_5.2-11_i386.deb 145d5e027364f007715210b213f2d13d 153736 science optional tree-ppuzzle_5.2-11_i386.deb a3cd8b564fbb23d85eaa49f00511be5c 238652 debug optional tree-puzzle-dbgsym_5.2-11_i386.deb 7537aaf434b4f8be182dcb940c95fa92 401004 doc optional tree-puzzle-doc_5.2-11_all.deb 588e2a8d4ed0426bca37fe5af91a44fd 6754 science optional tree-puzzle_5.2-11_i386.buildinfo 817bf3f1bea8409c2768726962e894d1 137304 science optional tree-puzzle_5.2-11_i386.deb Thu Jul 2 10:44:20 UTC 2020 I: diffoscope 149 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.j8G3ZxSUop/tree-puzzle_5.2-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.j8G3ZxSUop/tree-puzzle_5.2-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.j8G3ZxSUop/tree-puzzle_5.2-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.j8G3ZxSUop/b1/tree-puzzle_5.2-11_i386.changes /srv/reproducible-results/rbuild-debian/tmp.j8G3ZxSUop/b2/tree-puzzle_5.2-11_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.269s) 0.269s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 2 10:44:22 UTC 2020 I: diffoscope 149 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 2 10:44:22 UTC 2020 I: tree-puzzle from buster built successfully and reproducibly on i386. Thu Jul 2 10:44:23 UTC 2020 I: Submitting .buildinfo files to external archives: Thu Jul 2 10:44:24 UTC 2020 I: Submitting 8.0K b1/tree-puzzle_5.2-11_i386.buildinfo.asc Thu Jul 2 10:44:25 UTC 2020 I: Submitting 8.0K b2/tree-puzzle_5.2-11_i386.buildinfo.asc Thu Jul 2 10:44:26 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 2 10:44:26 UTC 2020 I: Done submitting .buildinfo files. Thu Jul 2 10:44:26 UTC 2020 I: Removing signed tree-puzzle_5.2-11_i386.buildinfo.asc files: removed './b1/tree-puzzle_5.2-11_i386.buildinfo.asc' removed './b2/tree-puzzle_5.2-11_i386.buildinfo.asc'