Fri Jun 14 15:30:59 UTC 2019 I: starting to build tm-align/buster/i386 on jenkins on '2019-06-14 15:30' Fri Jun 14 15:30:59 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/7/console.log Fri Jun 14 15:30:59 UTC 2019 I: Downloading source for buster/tm-align=20170708+dfsg-2 --2019-06-14 15:30:59-- http://deb.debian.org/debian/pool/main/t/tm-align/tm-align_20170708+dfsg-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/t/tm-align/tm-align_20170708+dfsg-2.dsc [following] --2019-06-14 15:30:59-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/tm-align/tm-align_20170708+dfsg-2.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2101 (2.1K) Saving to: ‘tm-align_20170708+dfsg-2.dsc’ 0K .. 100% 14.1M=0s 2019-06-14 15:30:59 (14.1 MB/s) - ‘tm-align_20170708+dfsg-2.dsc’ saved [2101/2101] Fri Jun 14 15:30:59 UTC 2019 I: tm-align_20170708+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tm-align Binary: tm-align Architecture: any Version: 20170708+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Tim Booth , Andreas Tille Homepage: http://zhanglab.ccmb.med.umich.edu/TM-align/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/tm-align Vcs-Git: https://salsa.debian.org/med-team/tm-align.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), gfortran Package-List: tm-align deb science optional arch=any Checksums-Sha1: 2689e5b0b65b49d781ee994b4d996695d7849a6e 20412 tm-align_20170708+dfsg.orig.tar.xz ba2f31036b753b84725df179eb72115c158cc6cf 817808 tm-align_20170708+dfsg-2.debian.tar.xz Checksums-Sha256: e0a833712d0fe99328f902365a0f2410b18d3012bf9e70548c4ff13743365044 20412 tm-align_20170708+dfsg.orig.tar.xz d041a0b9396855ce21385c032c06c3774a710880e805c05e8e7dcb489ea3db34 817808 tm-align_20170708+dfsg-2.debian.tar.xz Files: af49e04120bf2825aa720d94c5942d73 20412 tm-align_20170708+dfsg.orig.tar.xz c6b7f6bb66d2c023ab28da5e3901fa42 817808 tm-align_20170708+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvYOk8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtERkA/9H1GbcIqjfD52w7F5Xnd+BF8ZaI58ISq5 7NPygI36VbGtwGv0RM3gxyRRRq1IRJbLf+70Nxhc7NO1FB4pg69McsPY4NpgLzkP AT0sFQ17dk820vhqVXhptDG4Tnqo8CC8B+vi78mAQ/Svy+HnV1pkiMI3IgseHS+l Abfm8npoSLJSP+lxjLsK8Lzi1Xm2py6jvcygqyp+CCCZ1FDeJdIdRu9bjuDE3ogA Ueh0uGfzta3QBhnuw4oa6gDdlvpM6VDWSadzN8eSQ/lvrxuDj0YplLJCzLlRTEWV ZFL7o8lRnoNUKXYBZXKPiQRQTuPcGs5QdgqYqz+JK7MQ47LQ7WvCkoQe3MVMThzo k/1lE5KjoMd/5B/YJLTtTwimfm86bA7XkPWYDSeq4Uf36KCO90Yj8sna+yYITSFI j3VUXxLFSqUTOa1vRzQVkAwni99d+NeFwXCtObdwvkfDQbYhJRCRhennSRqoOfJK JhWW/u3d/+y5saZtjksvpCNehcIfsgUpTlwaMPHODpxkogOMuYyebcySMSiLiHk6 ywaIOql/Nq90sPqDXnaEVmZ0JTuZypoEuizIxYoi0jSFhdAAjrfKv1iWDOjent2m Chqcfr1jNbdkAb+yTNoMqck94FlJj9cG51kqjjFy0HQHfSY0UGRGs5ovGBSW0uQL S/ThsVHP90E= =ZC4M -----END PGP SIGNATURE----- Fri Jun 14 15:30:59 UTC 2019 I: Checking whether the package is not for us Fri Jun 14 15:30:59 UTC 2019 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Fri Jun 14 15:30:59 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Fri Jun 14 15:43:48 UTC 2019 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 14 03:31:02 -12 2019 I: pbuilder-time-stamp: 1560526262 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tm-align_20170708+dfsg-2.dsc] I: copying [./tm-align_20170708+dfsg.orig.tar.xz] I: copying [./tm-align_20170708+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 29 23:02:39 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tm-align_20170708+dfsg-2.dsc dpkg-source: info: extracting tm-align in tm-align-20170708+dfsg dpkg-source: info: unpacking tm-align_20170708+dfsg.orig.tar.xz dpkg-source: info: unpacking tm-align_20170708+dfsg-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), gfortran dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 105 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran-8-dev i386 8.3.0-6 [603 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 gfortran-8 i386 8.3.0-6 [9465 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 gfortran i386 4:8.3.0-1 [1432 B] Fetched 30.0 MB in 30s (1009 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../33-libgfortran5_8.3.0-6_i386.deb ... Unpacking libgfortran5:i386 (8.3.0-6) ... Selecting previously unselected package libgfortran-8-dev:i386. Preparing to unpack .../34-libgfortran-8-dev_8.3.0-6_i386.deb ... Unpacking libgfortran-8-dev:i386 (8.3.0-6) ... Selecting previously unselected package gfortran-8. Preparing to unpack .../35-gfortran-8_8.3.0-6_i386.deb ... Unpacking gfortran-8 (8.3.0-6) ... Selecting previously unselected package gfortran. Preparing to unpack .../36-gfortran_4%3a8.3.0-1_i386.deb ... Unpacking gfortran (4:8.3.0-1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgfortran-8-dev:i386 (8.3.0-6) ... Setting up libtool (2.4.6-9) ... Setting up gfortran-8 (8.3.0-6) ... Setting up m4 (1.4.18-2) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/tm-align-20170708+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package tm-align dpkg-buildpackage: info: source version 20170708+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/tm-align-20170708+dfsg' for src in `ls *.f` ; do \ rm -f `basename ${src} .f` ; \ done dh_clean make[1]: Leaving directory '/build/tm-align-20170708+dfsg' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/tm-align-20170708+dfsg' for src in `ls *.f` ; do \ gfortran -O3 -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -o `basename ${src} .f` ${src} ; \ done make[1]: Leaving directory '/build/tm-align-20170708+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tm-align/usr/bin/TMalign debian/tm-align/usr/bin/TMscore were not linked against libgcc_s.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tm-align/usr/bin/TMalign debian/tm-align/usr/bin/TMscore were not linked against libquadmath.so.0 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'tm-align' in '../tm-align_20170708+dfsg-2_i386.deb'. dpkg-deb: building package 'tm-align-dbgsym' in '../tm-align-dbgsym_20170708+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tm-align_20170708+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10314 and its subdirectories I: Current time: Fri Jun 14 03:43:47 -12 2019 I: pbuilder-time-stamp: 1560527027 Fri Jun 14 15:43:48 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Fri Jun 14 15:43:48 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Fri Jun 14 15:44:13 UTC 2019 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Fri Jun 14 15:44:14 UTC 2019 I: tm-align_20170708+dfsg-2_i386.changes: Format: 1.8 Date: Tue, 30 Oct 2018 11:56:31 +0100 Source: tm-align Binary: tm-align tm-align-dbgsym Architecture: i386 Version: 20170708+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tm-align - structural alignment of proteins Changes: tm-align (20170708+dfsg-2) unstable; urgency=medium . * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright Checksums-Sha1: cd82967990e7b76a3d9f635df6498c5d37435466 7488 tm-align-dbgsym_20170708+dfsg-2_i386.deb e95af54ac9cf8041532181b47eb8a90e175d4881 4619 tm-align_20170708+dfsg-2_i386.buildinfo 1aed2117aee5f3d13a44ad3a4181f3c277d2be6e 860504 tm-align_20170708+dfsg-2_i386.deb Checksums-Sha256: ff65ba6367dfcd30e4d6056f10a9f755d6977bf39d39b4cfec203aecca3e0c28 7488 tm-align-dbgsym_20170708+dfsg-2_i386.deb 9f511007b5e151b2eb920ef2d224190bc6306f33a6aa38a8a0f436332da72235 4619 tm-align_20170708+dfsg-2_i386.buildinfo 62827fb751593b0e74cb491ba50d4f16aa6332575b841d2f1992cfb56764da55 860504 tm-align_20170708+dfsg-2_i386.deb Files: a39307c11a3278d90b7291f5d1ec5726 7488 debug optional tm-align-dbgsym_20170708+dfsg-2_i386.deb cbcd7dfab260c97175f10484f2596dbe 4619 science optional tm-align_20170708+dfsg-2_i386.buildinfo b2032c1d565ade4f6f289b663359bc83 860504 science optional tm-align_20170708+dfsg-2_i386.deb Fri Jun 14 15:44:15 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.nFdmjePd4r/tm-align_20170708+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.nFdmjePd4r/tm-align_20170708+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.nFdmjePd4r/tm-align_20170708+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.nFdmjePd4r/b1/tm-align_20170708+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.nFdmjePd4r/b2/tm-align_20170708+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.210s) 0.210s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Jun 14 15:44:16 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 14 15:44:16 UTC 2019 I: tm-align from buster built successfully and reproducibly on i386. Fri Jun 14 15:44:17 UTC 2019 I: Submitting .buildinfo files to external archives: Fri Jun 14 15:44:18 UTC 2019 I: Submitting 8.0K b1/tm-align_20170708+dfsg-2_i386.buildinfo.asc Fri Jun 14 15:44:45 UTC 2019 I: Submitting 8.0K b2/tm-align_20170708+dfsg-2_i386.buildinfo.asc Fri Jun 14 15:45:08 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 14 15:45:08 UTC 2019 I: Done submitting .buildinfo files. Fri Jun 14 15:45:08 UTC 2019 I: Removing signed tm-align_20170708+dfsg-2_i386.buildinfo.asc files: removed './b1/tm-align_20170708+dfsg-2_i386.buildinfo.asc' removed './b2/tm-align_20170708+dfsg-2_i386.buildinfo.asc'