Fri Jun 14 13:22:14 UTC 2019 I: starting to build squizz/buster/i386 on jenkins on '2019-06-14 13:21' Fri Jun 14 13:22:14 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/13/console.log Fri Jun 14 13:22:14 UTC 2019 I: Downloading source for buster/squizz=0.99d+dfsg-2 --2019-06-14 13:22:14-- http://deb.debian.org/debian/pool/main/s/squizz/squizz_0.99d+dfsg-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/s/squizz/squizz_0.99d+dfsg-2.dsc [following] --2019-06-14 13:22:14-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/squizz/squizz_0.99d+dfsg-2.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) Saving to: ‘squizz_0.99d+dfsg-2.dsc’ 0K .. 100% 161M=0s 2019-06-14 13:22:14 (161 MB/s) - ‘squizz_0.99d+dfsg-2.dsc’ saved [2106/2106] Fri Jun 14 13:22:14 UTC 2019 I: squizz_0.99d+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: squizz Binary: squizz, libsquizz, libsquizz-dev Architecture: any Version: 0.99d+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/squizz Vcs-Git: https://salsa.debian.org/med-team/squizz.git Build-Depends: debhelper (>= 11~) Package-List: libsquizz deb libs optional arch=any libsquizz-dev deb libdevel optional arch=any squizz deb science optional arch=any Checksums-Sha1: 5c5f13f94c8e3c8959214d699c37e6bae0039221 638292 squizz_0.99d+dfsg.orig.tar.xz a849457562141288a5c3dab301b73dc551b432ea 4476 squizz_0.99d+dfsg-2.debian.tar.xz Checksums-Sha256: b1b264da5801b5488d5a1a4e3ff6b8a6c0ce396ab34fcedab61271cb5c20e481 638292 squizz_0.99d+dfsg.orig.tar.xz 5ebf53b4d69e172b51ce85de441e76381a60254c606ebaddd979dbba95c2c41f 4476 squizz_0.99d+dfsg-2.debian.tar.xz Files: 9ce5bc629c7420f6cd9de5cbfb3619be 638292 squizz_0.99d+dfsg.orig.tar.xz 126300c24707abf308505cecf25eb58c 4476 squizz_0.99d+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvYRT8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGGJQ//U78LmYhy9LujWQarHlKDMNn8dVc57TNj PnPNnPgZmxZntb71FCX9+Dqz/uzTlrNSqX8oHE04NSMllonO4IhZpTY6diUZH4KL sKcbC+GdO+2N0gSYL/XzNqiLxI/JX1u8yvx0gqX6oET3b3PMd39+bhxaBiKl9GIj G7g+9ZkjoPP8CymK76rTv7R9mdyd+HwFCqHyycXxYszJvhlFQcmcbZ3RQX1eLBYO b7JynWMwp288OUMqamThGvibjEXWbfquJBXf/bTAbEd1cm2PBiP6SVgUjJiMeChS zKF94x8NzH0/YHhcnBAn5yznpt1MaXLe4MvBHiCl3Grg0TxozBC1NuttrU4BXdeo 5Op05n44qT31qs6/HDECuGBRiOso85XSR4GAWU90SsBins5gb2Mli3pxnW6Plc/Y XDCGvTXPxIcoRgSiEQWw5VRgfKY59FLfiwmX8Bh1eHkPz6NC/zg5ARTflptEknNS uzr4wxLtULvRwRoygj/vQ3RNyvq0F72aUtXLIjLlOlWDSqjxPS0zIZbvvillxGTi hJiqOMnYsCr66fEBzGNlYGIZCGyBLWMYNE8gtnLY0a2Xbav/xaSrxG6+77X1YLms 7/Uue6miW7T9tZ/IkZ+XVIghL5nj/3DZHBJCAX6lGBxZhnpZt61qFY/WbrEvsojW LT+Y/Hyu3WU= =l3/p -----END PGP SIGNATURE----- Fri Jun 14 13:22:14 UTC 2019 I: Checking whether the package is not for us Fri Jun 14 13:22:14 UTC 2019 I: Starting 1st build on remote node profitbricks-build16-i386.debian.net. Fri Jun 14 13:22:14 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build16-i386.debian.net. Fri Jun 14 13:22:46 UTC 2019 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 16 07:45:15 -12 2020 I: pbuilder-time-stamp: 1594928715 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [squizz_0.99d+dfsg-2.dsc] I: copying [./squizz_0.99d+dfsg.orig.tar.xz] I: copying [./squizz_0.99d+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 29 23:49:19 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./squizz_0.99d+dfsg-2.dsc dpkg-source: info: extracting squizz in squizz-0.99d+dfsg dpkg-source: info: unpacking squizz_0.99d+dfsg.orig.tar.xz dpkg-source: info: unpacking squizz_0.99d+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying correct-manpages-section.patch dpkg-source: info: applying disable-swissprot-test.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.3 MB in 1s (27.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/squizz-0.99d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package squizz dpkg-buildpackage: info: source version 0.99d+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:12: installing './compile' configure.ac:3: installing './missing' lib/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for bison... no checking for byacc... no checking for flex... no checking for lex... no checking for pod2man... pod2man checking for pod2html... pod2html checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking for inttypes.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for off_t... yes checking for size_t... yes checking size of size_t... 4 checking for uint64_t... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for strftime... yes checking for localtime_r... yes checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating src/Makefile config.status: creating data/Makefile config.status: creating doc/Makefile config.status: creating test/Makefile config.status: creating lib/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j18 make[1]: Entering directory '/build/squizz-0.99d+dfsg' Making all in . make[2]: Entering directory '/build/squizz-0.99d+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/squizz-0.99d+dfsg' Making all in lib make[2]: Entering directory '/build/squizz-0.99d+dfsg/lib' make all-am make[3]: Entering directory '/build/squizz-0.99d+dfsg/lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embl.lo sequence/embl.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embly.lo sequence/embly.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embll.lo sequence/embll.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fasta.lo sequence/fasta.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fastay.lo sequence/fastay.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/fastal.lo sequence/fastal.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbank.lo sequence/genbank.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbanky.lo sequence/genbanky.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbankl.lo sequence/genbankl.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gcg.lo sequence/gcg.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gcgy.lo sequence/gcgy.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat 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-Werror=format-security -c -o sequence/ig.lo sequence/ig.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.c -fPIC -DPIC -o .libs/sequence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align.c -fPIC -DPIC -o .libs/align.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastay.c -fPIC -DPIC -o sequence/.libs/fastay.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdey.c -fPIC -DPIC -o sequence/.libs/gdey.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embl.c -fPIC -DPIC -o sequence/.libs/embl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/ig.c -fPIC -DPIC -o sequence/.libs/ig.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embll.c -fPIC -DPIC -o sequence/.libs/embll.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbanky.c -fPIC -DPIC -o sequence/.libs/genbanky.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcg.c -fPIC -DPIC -o sequence/.libs/gcg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgl.c -fPIC -DPIC -o sequence/.libs/gcgl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embly.c -fPIC -DPIC -o sequence/.libs/embly.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gde.c -fPIC -DPIC -o sequence/.libs/gde.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbank.c -fPIC -DPIC -o sequence/.libs/genbank.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fasta.c -fPIC -DPIC -o sequence/.libs/fasta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/genbankl.c -fPIC -DPIC -o sequence/.libs/genbankl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastal.c -fPIC -DPIC -o sequence/.libs/fastal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgy.c -fPIC -DPIC -o sequence/.libs/gcgy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdel.c -fPIC -DPIC -o sequence/.libs/gdel.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gde.c -o sequence/gde.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fasta.c -o sequence/fasta.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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align/megal.o align/msf.o align/msfy.o align/msfl.o align/nexusi.o align/nexusiy.o align/nexusil.o align/phylipi.o align/phylipiy.o align/phylipil.o align/phylips.o align/phylipsy.o align/phylipsl.o align/stock.o align/stocky.o align/stockl.o align/parse.o align/phylip.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbioali.a libtool: link: ( cd ".libs" && rm -f "libbioali.la" && ln -s "../libbioali.la" "libbioali.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioseq.la -rpath /usr/lib/i386-linux-gnu sequence.lo sequence/embl.lo sequence/embly.lo sequence/embll.lo sequence/fasta.lo sequence/fastay.lo sequence/fastal.lo sequence/genbank.lo sequence/genbanky.lo sequence/genbankl.lo sequence/gcg.lo sequence/gcgy.lo sequence/gcgl.lo sequence/gde.lo sequence/gdey.lo sequence/gdel.lo sequence/ig.lo sequence/igy.lo sequence/igl.lo sequence/nbrf.lo sequence/nbrfy.lo sequence/nbrfl.lo sequence/codata.lo sequence/codatay.lo sequence/codatal.lo sequence/raw.lo sequence/rawy.lo sequence/rawl.lo sequence/sprot.lo sequence/sproty.lo sequence/sprotl.lo sequence/parse.lo sequence/protein.lo sequence/utils.lo extern/text.lo extern/file.lo libtool: link: gcc -shared -fPIC -DPIC .libs/sequence.o sequence/.libs/embl.o sequence/.libs/embly.o sequence/.libs/embll.o sequence/.libs/fasta.o sequence/.libs/fastay.o sequence/.libs/fastal.o sequence/.libs/genbank.o sequence/.libs/genbanky.o sequence/.libs/genbankl.o sequence/.libs/gcg.o sequence/.libs/gcgy.o sequence/.libs/gcgl.o sequence/.libs/gde.o sequence/.libs/gdey.o sequence/.libs/gdel.o sequence/.libs/ig.o sequence/.libs/igy.o sequence/.libs/igl.o sequence/.libs/nbrf.o sequence/.libs/nbrfy.o sequence/.libs/nbrfl.o sequence/.libs/codata.o sequence/.libs/codatay.o sequence/.libs/codatal.o sequence/.libs/raw.o sequence/.libs/rawy.o sequence/.libs/rawl.o sequence/.libs/sprot.o sequence/.libs/sproty.o sequence/.libs/sprotl.o sequence/.libs/parse.o sequence/.libs/protein.o sequence/.libs/utils.o extern/.libs/text.o extern/.libs/file.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioseq.so.0 -o .libs/libbioseq.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libbioseq.so.0" && ln -s "libbioseq.so.0.0.0" "libbioseq.so.0") libtool: link: (cd ".libs" && rm -f "libbioseq.so" && ln -s "libbioseq.so.0.0.0" "libbioseq.so") libtool: link: ar cru .libs/libbioseq.a sequence.o sequence/embl.o sequence/embly.o sequence/embll.o sequence/fasta.o sequence/fastay.o sequence/fastal.o sequence/genbank.o sequence/genbanky.o sequence/genbankl.o sequence/gcg.o sequence/gcgy.o sequence/gcgl.o sequence/gde.o sequence/gdey.o sequence/gdel.o sequence/ig.o sequence/igy.o sequence/igl.o sequence/nbrf.o sequence/nbrfy.o sequence/nbrfl.o sequence/codata.o sequence/codatay.o sequence/codatal.o sequence/raw.o sequence/rawy.o sequence/rawl.o sequence/sprot.o sequence/sproty.o sequence/sprotl.o sequence/parse.o sequence/protein.o sequence/utils.o extern/text.o extern/file.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbioseq.a libtool: link: ( cd ".libs" && rm -f "libbioseq.la" && ln -s "../libbioseq.la" "libbioseq.la" ) make[3]: Leaving directory '/build/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/lib' Making all in src make[2]: Entering directory '/build/squizz-0.99d+dfsg/src' gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o squizz.o squizz.c gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o format.o format.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la libtool: link: gcc -g -O2 -ffile-prefix-map=/build/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/squizz squizz.o format.o ../lib/.libs/libbioali.so ../lib/.libs/libbioseq.so make[2]: Leaving directory '/build/squizz-0.99d+dfsg/src' Making all in data make[2]: Entering directory '/build/squizz-0.99d+dfsg/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/squizz-0.99d+dfsg/data' Making all in doc make[2]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/squizz-0.99d+dfsg/doc' Making all in test make[2]: Entering directory '/build/squizz-0.99d+dfsg/test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/squizz-0.99d+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/squizz-0.99d+dfsg' dh_auto_test --no-parallel make -j1 check VERBOSE=1 make[2]: Entering directory '/build/squizz-0.99d+dfsg' Making check in . make[3]: Entering directory '/build/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg' Making check in lib make[3]: Entering directory '/build/squizz-0.99d+dfsg/lib' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/lib' Making check in src make[3]: Entering directory '/build/squizz-0.99d+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg/src' Making check in data make[3]: Entering directory '/build/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg/data' Making check in doc make[3]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg/doc' Making check in test make[3]: Entering directory '/build/squizz-0.99d+dfsg/test' make check-TESTS make[4]: Entering directory '/build/squizz-0.99d+dfsg/test' make[5]: Entering directory '/build/squizz-0.99d+dfsg/test' PASS: squizz.sh PASS: fmtseq.sh PASS: fmtali.sh PASS: convseq.sh PASS: convali.sh PASS: embl.sh PASS: genbank.sh PASS: ig.sh PASS: nbrf.sh PASS: raw.sh PASS: align.sh PASS: clustal.sh PASS: mega.sh PASS: msf.sh PASS: nexusi.sh PASS: phylipi.sh PASS: phylips.sh PASS: stockholm.sh PASS: count.sh ============================================================================ Testsuite summary for squizz 0.99d ============================================================================ # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/squizz-0.99d+dfsg/test' make[4]: Leaving directory '/build/squizz-0.99d+dfsg/test' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/squizz-0.99d+dfsg' make[1]: Leaving directory '/build/squizz-0.99d+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/squizz-0.99d\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/squizz-0.99d+dfsg' Making install in . make[2]: Entering directory '/build/squizz-0.99d+dfsg' make[3]: Entering directory '/build/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg' make[2]: Leaving directory '/build/squizz-0.99d+dfsg' Making install in lib make[2]: Entering directory '/build/squizz-0.99d+dfsg/lib' make[3]: Entering directory '/build/squizz-0.99d+dfsg/lib' /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libbioseq.so.0.0.0 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.so.0.0.0 libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so.0 || { rm -f libbioseq.so.0 && ln -s libbioseq.so.0.0.0 libbioseq.so.0; }; }) libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so || { rm -f libbioseq.so && ln -s libbioseq.so.0.0.0 libbioseq.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioseq.lai /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.la libtool: install: /usr/bin/install -c .libs/libbioali.so.0.0.0 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.so.0.0.0 libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioali.so.0.0.0 libbioali.so.0 || { rm -f libbioali.so.0 && ln -s libbioali.so.0.0.0 libbioali.so.0; }; }) libtool: install: (cd /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioali.so.0.0.0 libbioali.so || { rm -f libbioali.so && ln -s libbioali.so.0.0.0 libbioali.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioali.lai /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.la libtool: install: /usr/bin/install -c .libs/libbioseq.a /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.a libtool: install: chmod 644 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.a libtool: install: ranlib /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.a libtool: install: /usr/bin/install -c .libs/libbioali.a /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: install: chmod 644 /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: install: ranlib /build/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/install -c -m 644 align/clustal.h align/fasta2.h align/mega.h align/msf.h align/nexusi.h align/phylipi.h align/phylips.h align/stock.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence/embl.h sequence/fasta.h sequence/genbank.h sequence/gcg.h sequence/gde.h sequence/ig.h sequence/nbrf.h sequence/codata.h sequence/raw.h sequence/sprot.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence.h align.h '/build/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/.' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/lib' Making install in src make[2]: Entering directory '/build/squizz-0.99d+dfsg/src' make[3]: Entering directory '/build/squizz-0.99d+dfsg/src' /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c squizz '/build/squizz-0.99d+dfsg/debian/tmp/usr/bin' libtool: warning: '../lib/libbioali.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: warning: '../lib/libbioseq.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/squizz /build/squizz-0.99d+dfsg/debian/tmp/usr/bin/squizz make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg/src' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/src' Making install in data make[2]: Entering directory '/build/squizz-0.99d+dfsg/data' make[3]: Entering directory '/build/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg/data' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/data' Making install in doc make[2]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[3]: Entering directory '/build/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/install -c -m 644 seqfmt.html alifmt.html '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'squizz.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1/squizz.1' /bin/mkdir -p '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' /usr/bin/install -c -m 644 'seqfmt.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/seqfmt.5' /usr/bin/install -c -m 644 'alifmt.man' '/build/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/alifmt.5' make[3]: Leaving directory '/build/squizz-0.99d+dfsg/doc' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/doc' Making install in test make[2]: Entering directory '/build/squizz-0.99d+dfsg/test' make[3]: Entering directory '/build/squizz-0.99d+dfsg/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/squizz-0.99d+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: symbol fasta_print used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_free used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol xstrdup used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol gcg_crc used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_new used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_type used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_fixnam used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol text_strupd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_check used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libsquizz-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'squizz' in '../squizz_0.99d+dfsg-2_i386.deb'. dpkg-deb: building package 'squizz-dbgsym' in '../squizz-dbgsym_0.99d+dfsg-2_i386.deb'. dpkg-deb: building package 'libsquizz' in '../libsquizz_0.99d+dfsg-2_i386.deb'. dpkg-deb: building package 'libsquizz-dev' in '../libsquizz-dev_0.99d+dfsg-2_i386.deb'. dpkg-deb: building package 'libsquizz-dbgsym' in '../libsquizz-dbgsym_0.99d+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../squizz_0.99d+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29510 and its subdirectories I: Current time: Thu Jul 16 07:45:45 -12 2020 I: pbuilder-time-stamp: 1594928745 Fri Jun 14 13:22:46 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build2-i386.debian.net. Fri Jun 14 13:22:46 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build2-i386.debian.net. Fri Jun 14 13:35:17 UTC 2019 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. Fri Jun 14 13:35:17 UTC 2019 I: squizz_0.99d+dfsg-2_i386.changes: Format: 1.8 Date: Tue, 30 Oct 2018 12:01:25 +0100 Source: squizz Binary: libsquizz libsquizz-dbgsym libsquizz-dev squizz squizz-dbgsym Architecture: i386 Version: 0.99d+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libsquizz - Conversion libs used by squizz genetic sequence converter libsquizz-dev - development tools for squizz genetic sequence converter squizz - Converter for genetic sequences and alignments Changes: squizz (0.99d+dfsg-2) unstable; urgency=medium . * debhelper 11 (+ dh_auto_test --no-parallel) * Update README.source * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/copyright Checksums-Sha1: bdf346fd3cbe63bb52567f053b3aeee09b6b9c6f 200176 libsquizz-dbgsym_0.99d+dfsg-2_i386.deb 86a58c75bb703fdb75eb80977d8ff13c8d91ca55 274508 libsquizz-dev_0.99d+dfsg-2_i386.deb d35be80be794be825e093521e8067892af41a098 263104 libsquizz_0.99d+dfsg-2_i386.deb e2840d8bd47aabc7aaa453957988f4035ccbef8c 10860 squizz-dbgsym_0.99d+dfsg-2_i386.deb 7f95a7b324baa2fc19a7948ec5f53d1931c9b52a 5300 squizz_0.99d+dfsg-2_i386.buildinfo d3f92ae86854e9eb67626da6845b3107f4ac46e4 32096 squizz_0.99d+dfsg-2_i386.deb Checksums-Sha256: 2dbb9c42e3a81378c590b4cceaf5b3d7475117eb781c2008298c1d0f5bbcb5d5 200176 libsquizz-dbgsym_0.99d+dfsg-2_i386.deb 3c66afb6f5b3d054530c00542e3737d6b6c17918924c66b23a29949bc187e47a 274508 libsquizz-dev_0.99d+dfsg-2_i386.deb 91b17b5f1db438d4bd2382e25a26ccc338cf86213111b3e2cf198fb2eff80521 263104 libsquizz_0.99d+dfsg-2_i386.deb 3e004b32151981eb3a69ed6c6d044f97c723ce24496f2d67abc6a5d01b200f22 10860 squizz-dbgsym_0.99d+dfsg-2_i386.deb ad0360a29a63335ab5017d983af01ce915646bf2f2d685275101ade44fe2fa42 5300 squizz_0.99d+dfsg-2_i386.buildinfo bce44817fbac555708e5dc1f195d56f6df59d35686dc379e0a0df49210eddaff 32096 squizz_0.99d+dfsg-2_i386.deb Files: 6b3e18d24d6716d9b153915dad8b8dd3 200176 debug optional libsquizz-dbgsym_0.99d+dfsg-2_i386.deb 0e2404f1649dcfeba3aed92f7be3ee50 274508 libdevel optional libsquizz-dev_0.99d+dfsg-2_i386.deb 876f7a85b5af41e2474a172974c9a1ec 263104 libs optional libsquizz_0.99d+dfsg-2_i386.deb c31558f9708f1149c7f3c0047e85ec49 10860 debug optional squizz-dbgsym_0.99d+dfsg-2_i386.deb 0474fb007212106fbf1c0f532f25155d 5300 science optional squizz_0.99d+dfsg-2_i386.buildinfo ad9d7cb7ae9aa9016040b8f9a2b023eb 32096 science optional squizz_0.99d+dfsg-2_i386.deb Fri Jun 14 13:35:18 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.kC47IxA20A/squizz_0.99d+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.kC47IxA20A/squizz_0.99d+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.kC47IxA20A/squizz_0.99d+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.kC47IxA20A/b1/squizz_0.99d+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.kC47IxA20A/b2/squizz_0.99d+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.268s) 0.268s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.036s) 0.036s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Jun 14 13:35:20 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 14 13:35:20 UTC 2019 I: squizz from buster built successfully and reproducibly on i386. Fri Jun 14 13:35:22 UTC 2019 I: Submitting .buildinfo files to external archives: Fri Jun 14 13:35:22 UTC 2019 I: Submitting 8.0K b1/squizz_0.99d+dfsg-2_i386.buildinfo.asc Fri Jun 14 13:35:50 UTC 2019 I: Submitting 8.0K b2/squizz_0.99d+dfsg-2_i386.buildinfo.asc Fri Jun 14 13:36:20 UTC 2019 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Fri Jun 14 13:36:20 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 14 13:36:20 UTC 2019 I: Done submitting .buildinfo files. Fri Jun 14 13:36:20 UTC 2019 I: Removing signed squizz_0.99d+dfsg-2_i386.buildinfo.asc files: removed './b1/squizz_0.99d+dfsg-2_i386.buildinfo.asc' removed './b2/squizz_0.99d+dfsg-2_i386.buildinfo.asc'