Sat Jun 27 21:23:00 UTC 2020 I: starting to build python-biopython/buster/i386 on jenkins on '2020-06-27 21:22' Sat Jun 27 21:23:00 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/8645/console.log Sat Jun 27 21:23:00 UTC 2020 I: Downloading source for buster/python-biopython=1.73+dfsg-1 --2020-06-27 21:23:00-- http://deb.debian.org/debian/pool/main/p/python-biopython/python-biopython_1.73+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3070 (3.0K) Saving to: ‘python-biopython_1.73+dfsg-1.dsc’ 0K .. 100% 169M=0s 2020-06-27 21:23:00 (169 MB/s) - ‘python-biopython_1.73+dfsg-1.dsc’ saved [3070/3070] Sat Jun 27 21:23:00 UTC 2020 I: python-biopython_1.73+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-biopython Binary: python-biopython, python3-biopython, python-biopython-doc, python-biopython-sql, python3-biopython-sql Architecture: any all Version: 1.73+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://biopython.org Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/python-biopython Vcs-Git: https://salsa.debian.org/med-team/python-biopython.git Testsuite: autopkgtest Build-Depends: debhelper (>= 12~), dh-python, python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa [any-amd64], clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml [any-amd64 any-i386 arm64 armhf sparc64], prank, probcons, python-mysqldb, python3-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib, python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, python-scipy, python3-scipy, python-setuptools, python3-setuptools, raxml [any-amd64], t-coffee, wise (>= 2.4.1-16) Package-List: python-biopython deb python optional arch=any python-biopython-doc deb doc optional arch=all python-biopython-sql deb python optional arch=all python3-biopython deb python optional arch=any python3-biopython-sql deb python optional arch=all Checksums-Sha1: 67bfa5d819301910c009a8fa7c1210b55bf1fdd7 9182776 python-biopython_1.73+dfsg.orig.tar.xz d613c4ef6521a5e90567fc38cb8ef43e07501f6d 14296 python-biopython_1.73+dfsg-1.debian.tar.xz Checksums-Sha256: b3e223d9e33fcc3a10f4330da482c078279729b99dbb4ffa03059f08449bd548 9182776 python-biopython_1.73+dfsg.orig.tar.xz 5decb298b71447ae498b94328a92c8ddcf3784cecb2ec703bdd2ce34d6dcade4 14296 python-biopython_1.73+dfsg-1.debian.tar.xz Files: 0443f756a4005c18669167c7facf511e 9182776 python-biopython_1.73+dfsg.orig.tar.xz 1ecfe0d400b6f766dfc9604f1e4c049b 14296 python-biopython_1.73+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlw5GzQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEHxg/9GQ1u7qPotPlU4W28pAAMzY/SnhBTv7dH 13g7REwSz8aU5A3HXTTvwnMP6EcdvcjiFJGXePz8rPBdzaq5fJG0NEJ4M8MAGig2 tHqv0V7W9/eyd5WOfJeCELZ5x4C3fO8fdmhUQdTYyoydb9WBMNmTyRPw8+b8xI+J ZWwjIF9BQ6inDSXSjgBQx8KM0XF8HGfWj6GQ8aipeS6lI0rwUNmYHQobpw2qwCK8 bXy4akLEUNRJHAwjb0OJ6MdnFFpRhet4g7efvUCHsujb60hOfODGp5r/CnFRWJi7 vfc9gQvDrFXB+bC/jV1u5JeBbiL/62OrA+6yiWlnes1V4iggCLeBOH4HLZIBaH3+ oTwJPiYQOA+a+ypKJRHkdTCep7nWrZ6tT5QKhiC+mEOraSmKBRxeKtWBOZxUgk50 bIHeDAjeIU+yHtEwzJ3/sekhDVLVh1WXosULkKr1njqS8NT+Fj3XnJRDVXNIfGaz WN0KWSwIn1sEBAm4i/c1a+tCij5cTNgUDYgQVUAltyrJkTYEfJvJMoTV5jgmM/Qh 6LhGICuEIBm0qi+J73V+4xnedsRiHvKIrLJv5PmEWe7rl9pJt3S3T9+QI+Vw5aV/ JCiRYFfJ3DTRvNZt/3KjcIScCLIiDAJ2e6KHOLpNd4WPu9csrdsu2voJyez3yb6g aXKDtHO5/LE= =VwG8 -----END PGP SIGNATURE----- Sat Jun 27 21:23:00 UTC 2020 I: Checking whether the package is not for us Sat Jun 27 21:23:00 UTC 2020 I: Starting 1st build on remote node profitbricks-build6-i386.debian.net. Sat Jun 27 21:23:00 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build6-i386.debian.net. Sat Jun 27 21:33:01 UTC 2020 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 30 15:45:56 -12 2021 I: pbuilder-time-stamp: 1627703156 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-biopython_1.73+dfsg-1.dsc] I: copying [./python-biopython_1.73+dfsg.orig.tar.xz] I: copying [./python-biopython_1.73+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 11 10:39:48 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biopython_1.73+dfsg-1.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.73+dfsg dpkg-source: info: unpacking python-biopython_1.73+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.73+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying reportlab3.5.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3764/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='a52506b3524045e5a99e2876d71ad3bf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3764' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qaGkjToUGL/pbuilderrc_wWKw --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qaGkjToUGL/b1 --logfile b1/build.log python-biopython_1.73+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux profitbricks-build6-i386 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 29 02:47 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/3764/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-python, python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python-mysqldb, python3-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib, python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, python-scipy, python3-scipy, python-setuptools, python3-setuptools, t-coffee, wise (>= 2.4.1-16) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on python-reportlab; however: Package python-reportlab is not installed. pbuilder-satisfydepends-dummy depends on python3-reportlab; however: Package python3-reportlab is not installed. pbuilder-satisfydepends-dummy depends on hevea; however: Package hevea is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on clustalo; however: Package clustalo is not installed. pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on dialign; however: Package dialign is not installed. pbuilder-satisfydepends-dummy depends on dssp; however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on emboss; however: Package emboss is not installed. pbuilder-satisfydepends-dummy depends on fasttree; however: Package fasttree is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on muscle; however: Package muscle is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on phylip; however: Package phylip is not installed. pbuilder-satisfydepends-dummy depends on phyml; however: Package phyml is not installed. pbuilder-satisfydepends-dummy depends on prank; however: Package prank is not installed. pbuilder-satisfydepends-dummy depends on probcons; however: Package probcons is not installed. pbuilder-satisfydepends-dummy depends on python-mysqldb; however: Package python-mysqldb is not installed. pbuilder-satisfydepends-dummy depends on python3-mysqldb; however: Package python3-mysqldb is not installed. pbuilder-satisfydepends-dummy depends on python-matplotlib; however: Package python-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python-pil; however: Package python-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python-rdflib (>= 4); however: Package python-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python-renderpm; however: Package python-renderpm is not installed. pbuilder-satisfydepends-dummy depends on python3-renderpm; however: Package python3-renderpm is not installed. pbuilder-satisfydepends-dummy depends on python-psycopg2; however: Package python-psycopg2 is not installed. pbuilder-satisfydepends-dummy depends on python3-psycopg2; however: Package python3-psycopg2 is not installed. pbuilder-satisfydepends-dummy depends on python-scipy; however: Package python-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on t-coffee; however: Package t-coffee is not installed. pbuilder-satisfydepends-dummy depends on wise (>= 2.4.1-16); however: Package wise is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} clustalo{a} clustalw{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dialign{a} dssp{a} dwz{a} emboss{a} emboss-data{a} emboss-lib{a} fasttree{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-lyx{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} gsfonts{a} hevea{a} intltool-debian{a} libarchive-zip-perl{a} libargtable2-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-atomic1.67.0{a} libboost-program-options1.67.0{a} libboost-thread1.67.0{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdbus-1-3{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgd3{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libhpdf-2.3.0{a} libhwloc-plugins{a} libhwloc5{a} libibverbs1{a} libice6{a} libicu63{a} libidn11{a} libijs-0.35{a} libimagequant0{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} liblmdb0{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmariadb3{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmpdec2{a} libncurses6{a} libnetpbm10{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenjp2-7{a} libopenmpi3{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a} libpng16-16{a} libpotrace0{a} libpq5{a} libpsm-infinipath1{a} libptexenc1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} librdmacm1{a} libreadline7{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} mafft{a} man-db{a} mariadb-common{a} mime-support{a} muscle{a} mysql-common{a} ncbi-blast+{a} ncbi-data{a} netpbm{a} ocaml-base-nox{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} phylip{a} phyml{a} po-debconf{a} poppler-data{a} prank{a} preview-latex-style{a} probcons{a} python{a} python-all{a} python-all-dev{a} python-backports.functools-lru-cache{a} python-cycler{a} python-dateutil{a} python-decorator{a} python-dev{a} python-isodate{a} python-kiwisolver{a} python-matplotlib{a} python-matplotlib-data{a} python-matplotlib2-data{a} python-minimal{a} python-mysqldb{a} python-numpy{a} python-pil{a} python-pkg-resources{a} python-psycopg2{a} python-pyparsing{a} python-rdflib{a} python-renderpm{a} python-reportlab{a} python-reportlab-accel{a} python-scipy{a} python-setuptools{a} python-six{a} python-subprocess32{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-isodate{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-mysqldb{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-psycopg2{a} python3-pyparsing{a} python3-rdflib{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} t-coffee{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} ttf-bitstream-vera{a} ucf{a} wise{a} wise-data{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: amap-align blast2 curl dbus dialign-tx fonts-droid-fallback fsa ibverbs-providers javascript-common kalign krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libopenmpi-dev libsasl2-modules libsoap-lite-perl libwww-perl libx11-protocol-perl libxml-simple-perl lmodern lynx mustang poa primer3 proda python-egenix-mxdatetime python-html5lib python-olefile python-sparqlwrapper python-tk python3-html5lib python3-olefile python3-sparqlwrapper python3-tk ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk tm-align wget x11-utils x11-xserver-utils xauth xdg-user-dirs 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 366 MB of archives. After unpacking 1435 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2+deb10u1 [1381 kB] Get: 9 http://deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2+deb10u1 [1934 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 23 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 24 http://deb.debian.org/debian buster/main i386 flex i386 2.6.4-6.2 [446 kB] Get: 25 http://deb.debian.org/debian buster/main i386 poppler-data all 0.4.9-2 [1473 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u1 [590 kB] Get: 27 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u1 [1745 kB] Get: 28 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u1 [1750 kB] Get: 31 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u1 [330 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 33 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 34 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 35 http://deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB] Get: 36 http://deb.debian.org/debian buster/main i386 tex-common all 6.11 [53.1 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 39 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 40 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 47 http://deb.debian.org/debian buster/main i386 openssh-client i386 1:7.9p1-10+deb10u2 [834 kB] Get: 48 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 49 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 50 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 51 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libargtable2-0 i386 13-1 [18.4 kB] Get: 53 http://deb.debian.org/debian buster/main i386 clustalo i386 1.2.4-2 [270 kB] Get: 54 http://deb.debian.org/debian buster/main i386 clustalw i386 2.1+lgpl-6 [301 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 56 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 59 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 61 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 67 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 68 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 69 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 70 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 71 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 72 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 73 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 74 http://deb.debian.org/debian buster/main i386 dialign i386 2.2.1-10 [141 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libboost-program-options1.67.0 i386 1.67.0-13+deb10u1 [365 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libboost-atomic1.67.0 i386 1.67.0-13+deb10u1 [226 kB] Get: 77 http://deb.debian.org/debian buster/main i386 libboost-thread1.67.0 i386 1.67.0-13+deb10u1 [270 kB] Get: 78 http://deb.debian.org/debian buster/main i386 dssp i386 3.0.0-3+b1 [260 kB] Get: 79 http://deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 80 http://deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3+deb10u1 [395 kB] Get: 81 http://deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 82 http://deb.debian.org/debian buster/main i386 ttf-bitstream-vera all 1.10-8 [352 kB] Get: 83 http://deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB] Get: 84 http://deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB] Get: 85 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 86 http://deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 87 http://deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB] Get: 88 http://deb.debian.org/debian buster/main i386 libtiff5 i386 4.1.0+git191117-2~deb10u1 [284 kB] Get: 89 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 90 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 91 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 92 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB] Get: 93 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB] Get: 94 http://deb.debian.org/debian buster/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get: 95 http://deb.debian.org/debian buster/main i386 libgd3 i386 2.2.5-5.2 [141 kB] Get: 96 http://deb.debian.org/debian buster/main i386 libhpdf-2.3.0 i386 2.3.0+dfsg-1 [360 kB] Get: 97 http://deb.debian.org/debian buster/main i386 mysql-common all 5.8+1.0.5 [7324 B] Get: 98 http://deb.debian.org/debian buster/main i386 mariadb-common all 1:10.3.22-0+deb10u1 [31.9 kB] Get: 99 http://deb.debian.org/debian buster/main i386 libmariadb3 i386 1:10.3.22-0+deb10u1 [169 kB] Get: 100 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB] Get: 101 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB] Get: 102 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 103 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u2 [236 kB] Get: 104 http://deb.debian.org/debian buster/main i386 libpq5 i386 11.7-0+deb10u1 [174 kB] Get: 105 http://deb.debian.org/debian buster/main i386 emboss-lib i386 6.6.0+dfsg-7+b1 [2962 kB] Get: 106 http://deb.debian.org/debian buster/main i386 emboss-data all 6.6.0+dfsg-7 [61.1 MB] Get: 107 http://deb.debian.org/debian buster/main i386 emboss i386 6.6.0+dfsg-7+b1 [1058 kB] Get: 108 http://deb.debian.org/debian buster/main i386 fasttree i386 2.1.10-2 [177 kB] Get: 109 http://deb.debian.org/debian buster/main i386 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 110 http://deb.debian.org/debian buster/main i386 fonts-lyx all 2.3.2-1 [199 kB] Get: 111 http://deb.debian.org/debian buster/main i386 libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 112 http://deb.debian.org/debian buster/main i386 libavahi-common-data i386 0.7-4+b1 [122 kB] Get: 113 http://deb.debian.org/debian buster/main i386 libavahi-common3 i386 0.7-4+b1 [56.2 kB] Get: 114 http://deb.debian.org/debian buster/main i386 libdbus-1-3 i386 1.12.16-1 [226 kB] Get: 115 http://deb.debian.org/debian buster/main i386 libavahi-client3 i386 0.7-4+b1 [60.1 kB] Get: 116 http://deb.debian.org/debian buster/main i386 libcups2 i386 2.2.10-6+deb10u3 [338 kB] Get: 117 http://deb.debian.org/debian buster/main i386 libcupsimage2 i386 2.2.10-6+deb10u3 [133 kB] Get: 118 http://deb.debian.org/debian buster/main i386 libidn11 i386 1.33-2.2 [116 kB] Get: 119 http://deb.debian.org/debian buster/main i386 libijs-0.35 i386 0.35-14 [18.9 kB] Get: 120 http://deb.debian.org/debian buster/main i386 libjbig2dec0 i386 0.16-1 [64.6 kB] Get: 121 http://deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB] Get: 122 http://deb.debian.org/debian buster/main i386 libopenjp2-7 i386 2.3.0-2+deb10u1 [164 kB] Get: 123 http://deb.debian.org/debian buster/main i386 libpaper1 i386 1.1.28 [21.4 kB] Get: 124 http://deb.debian.org/debian buster/main i386 libgs9 i386 9.27~dfsg-2+deb10u3 [2300 kB] Get: 125 http://deb.debian.org/debian buster/main i386 ghostscript i386 9.27~dfsg-2+deb10u3 [94.9 kB] Get: 126 http://deb.debian.org/debian buster/main i386 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3125 kB] Get: 127 http://deb.debian.org/debian buster/main i386 libnetpbm10 i386 2:10.0-15.3+b2 [85.3 kB] Get: 128 http://deb.debian.org/debian buster/main i386 netpbm i386 2:10.0-15.3+b2 [998 kB] Get: 129 http://deb.debian.org/debian buster/main i386 libpaper-utils i386 1.1.28 [18.3 kB] Get: 130 http://deb.debian.org/debian buster/main i386 libkpathsea6 i386 2018.20181218.49446-1 [171 kB] Get: 131 http://deb.debian.org/debian buster/main i386 libptexenc1 i386 2018.20181218.49446-1 [61.6 kB] Get: 132 http://deb.debian.org/debian buster/main i386 libsynctex2 i386 2018.20181218.49446-1 [83.5 kB] Get: 133 http://deb.debian.org/debian buster/main i386 libtexlua52 i386 2018.20181218.49446-1 [121 kB] Get: 134 http://deb.debian.org/debian buster/main i386 libtexlua53 i386 2018.20181218.49446-1 [141 kB] Get: 135 http://deb.debian.org/debian buster/main i386 libtexluajit2 i386 2018.20181218.49446-1 [270 kB] Get: 136 http://deb.debian.org/debian buster/main i386 t1utils i386 1.41-3 [62.2 kB] Get: 137 http://deb.debian.org/debian buster/main i386 libbrotli1 i386 1.0.7-2 [267 kB] Get: 138 http://deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB] Get: 139 http://deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB] Get: 140 http://deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB] Get: 141 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 142 http://deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 143 http://deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB] Get: 144 http://deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB] Get: 145 http://deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB] Get: 146 http://deb.debian.org/debian buster/main i386 libharfbuzz-icu0 i386 2.3.1-1 [834 kB] Get: 147 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 148 http://deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB] Get: 149 http://deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB] Get: 150 http://deb.debian.org/debian buster/main i386 libpotrace0 i386 1.15-1 [25.6 kB] Get: 151 http://deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 152 http://deb.debian.org/debian buster/main i386 libteckit0 i386 2.5.8+ds2-5 [268 kB] Get: 153 http://deb.debian.org/debian buster/main i386 libwoff1 i386 1.0.2-1 [46.0 kB] Get: 154 http://deb.debian.org/debian buster/main i386 libxt6 i386 1:1.1.5-1+b3 [195 kB] Get: 155 http://deb.debian.org/debian buster/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 156 http://deb.debian.org/debian buster/main i386 libxaw7 i386 2:1.0.13-1+b2 [209 kB] Get: 157 http://deb.debian.org/debian buster/main i386 libxi6 i386 2:1.7.9-1 [85.2 kB] Get: 158 http://deb.debian.org/debian buster/main i386 libxxhash0 i386 0.6.5-2 [8788 B] Get: 159 http://deb.debian.org/debian buster/main i386 libzzip-0-13 i386 0.13.62-3.2 [57.3 kB] Get: 160 http://deb.debian.org/debian buster/main i386 texlive-binaries i386 2018.20181218.49446-1 [11.2 MB] Get: 161 http://deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 162 http://deb.debian.org/debian buster/main i386 texlive-base all 2018.20190227-2 [19.7 MB] Get: 163 http://deb.debian.org/debian buster/main i386 ocaml-base-nox i386 4.05.0-11 [618 kB] Get: 164 http://deb.debian.org/debian buster/main i386 hevea all 2.32-2 [904 kB] Get: 165 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 166 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 167 http://deb.debian.org/debian buster/main i386 libevent-2.1-6 i386 2.1.8-stable-4 [191 kB] Get: 168 http://deb.debian.org/debian buster/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4 [137 kB] Get: 169 http://deb.debian.org/debian buster/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4 [48.1 kB] Get: 170 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] Get: 171 http://deb.debian.org/debian buster/main i386 libnl-3-200 i386 3.4.0-1 [65.8 kB] Get: 172 http://deb.debian.org/debian buster/main i386 libnl-route-3-200 i386 3.4.0-1 [170 kB] Get: 173 http://deb.debian.org/debian buster/main i386 libibverbs1 i386 22.1-1 [53.9 kB] Get: 174 http://deb.debian.org/debian buster/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6 [178 kB] Get: 175 http://deb.debian.org/debian buster/main i386 librdmacm1 i386 22.1-1 [68.8 kB] Get: 176 http://deb.debian.org/debian buster/main i386 libfabric1 i386 1.6.2-3 [364 kB] Get: 177 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 178 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] Get: 179 http://deb.debian.org/debian buster/main i386 ocl-icd-libopencl1 i386 2.2.12-2 [37.2 kB] Get: 180 http://deb.debian.org/debian buster/main i386 libnuma1 i386 2.0.12-1 [27.7 kB] Get: 181 http://deb.debian.org/debian buster/main i386 libhwloc5 i386 1.11.12-3 [119 kB] Get: 182 http://deb.debian.org/debian buster/main i386 libhwloc-plugins i386 1.11.12-3 [17.8 kB] Get: 183 http://deb.debian.org/debian buster/main i386 libimagequant0 i386 2.12.2-1.1 [32.4 kB] Get: 184 http://deb.debian.org/debian buster/main i386 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 185 http://deb.debian.org/debian buster/main i386 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 186 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 187 http://deb.debian.org/debian buster/main i386 liblmdb0 i386 0.9.22-1 [46.3 kB] Get: 188 http://deb.debian.org/debian buster/main i386 libmbedcrypto3 i386 2.16.0-1 [222 kB] Get: 189 http://deb.debian.org/debian buster/main i386 libmbedx509-0 i386 2.16.0-1 [93.0 kB] Get: 190 http://deb.debian.org/debian buster/main i386 libmbedtls12 i386 2.16.0-1 [133 kB] Get: 191 http://deb.debian.org/debian buster/main i386 libpmix2 i386 3.1.2-3 [541 kB] Get: 192 http://deb.debian.org/debian buster/main i386 libopenmpi3 i386 3.1.3-11 [2236 kB] Get: 193 http://deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2+deb10u1 [1059 kB] Get: 194 http://deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2+deb10u1 [31.4 MB] Get: 195 http://deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] Get: 196 http://deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] Get: 197 http://deb.debian.org/debian buster/main i386 libpython-all-dev i386 2.7.16-1 [1068 B] Get: 198 http://deb.debian.org/debian buster/main i386 libpython3.7 i386 3.7.3-2+deb10u1 [1506 kB] Get: 199 http://deb.debian.org/debian buster/main i386 libpython3.7-dev i386 3.7.3-2+deb10u1 [47.7 MB] Get: 200 http://deb.debian.org/debian buster/main i386 libpython3-dev i386 3.7.3-1 [20.2 kB] Get: 201 http://deb.debian.org/debian buster/main i386 libpython3-all-dev i386 3.7.3-1 [1068 B] Get: 202 http://deb.debian.org/debian buster/main i386 libwebpdemux2 i386 0.6.1-2 [87.8 kB] Get: 203 http://deb.debian.org/debian buster/main i386 libwebpmux3 i386 0.6.1-2 [99.1 kB] Get: 204 http://deb.debian.org/debian buster/main i386 mafft i386 7.407-2 [908 kB] Get: 205 http://deb.debian.org/debian buster/main i386 muscle i386 1:3.8.1551-2 [232 kB] Get: 206 http://deb.debian.org/debian buster/main i386 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get: 207 http://deb.debian.org/debian buster/main i386 ncbi-blast+ i386 2.8.1-1+deb10u1 [11.7 MB] Get: 208 http://deb.debian.org/debian buster/main i386 openmpi-common all 3.1.3-11 [165 kB] Get: 209 http://deb.debian.org/debian buster/main i386 openmpi-bin i386 3.1.3-11 [200 kB] Get: 210 http://deb.debian.org/debian buster/main i386 phylip i386 1:3.697+dfsg-1 [934 kB] Get: 211 http://deb.debian.org/debian buster/main i386 phyml i386 3:3.3.20180621-2 [1607 kB] Get: 212 http://deb.debian.org/debian buster/main i386 prank i386 0.0.170427+dfsg-2 [392 kB] Get: 213 http://deb.debian.org/debian buster/main i386 preview-latex-style all 11.91-2 [201 kB] Get: 214 http://deb.debian.org/debian buster/main i386 probcons i386 1.12-12 [104 kB] Get: 215 http://deb.debian.org/debian buster/main i386 python-all i386 2.7.16-1 [1044 B] Get: 216 http://deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2+deb10u1 [295 kB] Get: 217 http://deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] Get: 218 http://deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] Get: 219 http://deb.debian.org/debian buster/main i386 python-all-dev i386 2.7.16-1 [1068 B] Get: 220 http://deb.debian.org/debian buster/main i386 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get: 221 http://deb.debian.org/debian buster/main i386 python-six all 1.12.0-1 [15.7 kB] Get: 222 http://deb.debian.org/debian buster/main i386 python-cycler all 0.10.0-1 [7448 B] Get: 223 http://deb.debian.org/debian buster/main i386 python-dateutil all 2.7.3-3 [76.8 kB] Get: 224 http://deb.debian.org/debian buster/main i386 python-decorator all 4.3.0-1.1 [14.4 kB] Get: 225 http://deb.debian.org/debian buster/main i386 python-isodate all 0.6.0-1 [24.8 kB] Get: 226 http://deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] Get: 227 http://deb.debian.org/debian buster/main i386 python-kiwisolver i386 1.0.1-2+b1 [76.3 kB] Get: 228 http://deb.debian.org/debian buster/main i386 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get: 229 http://deb.debian.org/debian buster/main i386 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 230 http://deb.debian.org/debian buster/main i386 python-tz all 2019.1-1 [33.6 kB] Get: 231 http://deb.debian.org/debian buster/main i386 python-numpy i386 1:1.16.2-1 [2096 kB] Get: 232 http://deb.debian.org/debian buster/main i386 python-subprocess32 i386 3.5.3-1 [30.1 kB] Get: 233 http://deb.debian.org/debian buster/main i386 python-matplotlib i386 2.2.3-6 [5092 kB] Get: 234 http://deb.debian.org/debian buster/main i386 python-matplotlib-data all 3.0.2-2 [4138 kB] Get: 235 http://deb.debian.org/debian buster/main i386 python-mysqldb i386 1.3.10-2 [59.7 kB] Get: 236 http://deb.debian.org/debian buster/main i386 python-pil i386 5.4.1-2+deb10u1 [397 kB] Get: 237 http://deb.debian.org/debian buster/main i386 python-psycopg2 i386 2.7.7-1 [167 kB] Get: 238 http://deb.debian.org/debian buster/main i386 python-rdflib all 4.2.2-2 [260 kB] Get: 239 http://deb.debian.org/debian buster/main i386 python-renderpm i386 3.5.13-1+deb10u1 [79.2 kB] Get: 240 http://deb.debian.org/debian buster/main i386 python-reportlab-accel i386 3.5.13-1+deb10u1 [40.7 kB] Get: 241 http://deb.debian.org/debian buster/main i386 python-reportlab all 3.5.13-1+deb10u1 [545 kB] Get: 242 http://deb.debian.org/debian buster/main i386 python-scipy i386 1.1.0-7 [9280 kB] Get: 243 http://deb.debian.org/debian buster/main i386 python-setuptools all 40.8.0-1 [382 kB] Get: 244 http://deb.debian.org/debian buster/main i386 python3-all i386 3.7.3-1 [1068 B] Get: 245 http://deb.debian.org/debian buster/main i386 python3.7-dev i386 3.7.3-2+deb10u1 [509 kB] Get: 246 http://deb.debian.org/debian buster/main i386 python3-dev i386 3.7.3-1 [1260 B] Get: 247 http://deb.debian.org/debian buster/main i386 python3-all-dev i386 3.7.3-1 [1068 B] Get: 248 http://deb.debian.org/debian buster/main i386 python3-six all 1.12.0-1 [15.7 kB] Get: 249 http://deb.debian.org/debian buster/main i386 python3-cycler all 0.10.0-1 [7556 B] Get: 250 http://deb.debian.org/debian buster/main i386 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 251 http://deb.debian.org/debian buster/main i386 python3-decorator all 4.3.0-1.1 [14.5 kB] Get: 252 http://deb.debian.org/debian buster/main i386 python3-isodate all 0.6.0-1 [24.9 kB] Get: 253 http://deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 254 http://deb.debian.org/debian buster/main i386 python3-kiwisolver i386 1.0.1-2+b1 [73.8 kB] Get: 255 http://deb.debian.org/debian buster/main i386 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 256 http://deb.debian.org/debian buster/main i386 python3-numpy i386 1:1.16.2-1 [2115 kB] Get: 257 http://deb.debian.org/debian buster/main i386 python3-matplotlib i386 3.0.2-2 [5377 kB] Get: 258 http://deb.debian.org/debian buster/main i386 python3-mysqldb i386 1.3.10-2 [56.6 kB] Get: 259 http://deb.debian.org/debian buster/main i386 python3-pil i386 5.4.1-2+deb10u1 [398 kB] Get: 260 http://deb.debian.org/debian buster/main i386 python3-psycopg2 i386 2.7.7-1 [165 kB] Get: 261 http://deb.debian.org/debian buster/main i386 python3-rdflib all 4.2.2-2 [258 kB] Get: 262 http://deb.debian.org/debian buster/main i386 python3-renderpm i386 3.5.13-1+deb10u1 [79.5 kB] Get: 263 http://deb.debian.org/debian buster/main i386 python3-reportlab-accel i386 3.5.13-1+deb10u1 [36.2 kB] Get: 264 http://deb.debian.org/debian buster/main i386 python3-reportlab all 3.5.13-1+deb10u1 [541 kB] Get: 265 http://deb.debian.org/debian buster/main i386 python3-scipy i386 1.1.0-7 [9269 kB] Get: 266 http://deb.debian.org/debian buster/main i386 python3-setuptools all 40.8.0-1 [306 kB] Get: 267 http://deb.debian.org/debian buster/main i386 t-coffee i386 12.00.7fb08c2-4 [1551 kB] Get: 268 http://deb.debian.org/debian buster/main i386 texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 269 http://deb.debian.org/debian buster/main i386 texlive-latex-base all 2018.20190227-2 [984 kB] Get: 270 http://deb.debian.org/debian buster/main i386 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 271 http://deb.debian.org/debian buster/main i386 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 272 http://deb.debian.org/debian buster/main i386 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Get: 273 http://deb.debian.org/debian buster/main i386 wise-data all 2.4.1-21 [109 kB] Get: 274 http://deb.debian.org/debian buster/main i386 wise i386 2.4.1-21 [1079 kB] Fetched 366 MB in 6s (63.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_i386.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_i386.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_i386.deb ... Unpacking libssl1.1:i386 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:i386. Preparing to unpack .../14-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_i386.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:i386. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_i386.deb ... Unpacking libpython2-stdlib:i386 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython2.7-minimal:i386 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20699 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_i386.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20732 files and directories currently installed.) Preparing to unpack .../0-python_2.7.16-1_i386.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../1-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../2-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... 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Selecting previously unselected package wise. Preparing to unpack .../241-wise_2.4.1-21_i386.deb ... Unpacking wise (2.4.1-21) ... Setting up libgs9-common (9.27~dfsg-2+deb10u3) ... Setting up libboost-program-options1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up liblmdb0:i386 (0.9.22-1) ... Setting up libgraphite2-3:i386 (1.3.13-7) ... Setting up liblcms2-2:i386 (2.9-3) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Setting up libpixman-1-0:i386 (0.36.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up mysql-common (5.8+1.0.5) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:i386 (1:1.0.8-1+b2) ... Setting up libkeyutils1:i386 (1.6-6) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.62) ... Setting up libtexlua52:i386 (2018.20181218.49446-1) ... Setting up probcons (1.12-12) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libtexlua53:i386 (2018.20181218.49446-1) ... Setting up mafft (7.407-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.2-1) ... Setting up libijs-0.35:i386 (0.35-14) ... Setting up libtexluajit2:i386 (2018.20181218.49446-1) ... Setting up libbrotli1:i386 (1.0.7-2) ... Setting up phylip (1:3.697+dfsg-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libzzip-0-13:i386 (0.13.62-3.2) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libnetpbm10 (2:10.0-15.3+b2) ... Setting up muscle (1:3.8.1551-2) ... Setting up emboss-data (6.6.0+dfsg-7) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up t-coffee (12.00.7fb08c2-4) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-1+deb10u1) ... Setting up mariadb-common (1:10.3.22-0+deb10u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:i386 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:i386 (1:1.5.2-2+b1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libjbig2dec0:i386 (0.16-1) ... Setting up libidn11:i386 (1.33-2.2) ... Setting up libteckit0:i386 (2.5.8+ds2-5) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Setting up libavahi-common-data:i386 (0.7-4+b1) ... 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Setting up libxxhash0:i386 (0.6.5-2) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libnl-3-200:i386 (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up clustalw (2.1+lgpl-6) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libmbedcrypto3:i386 (2.16.0-1) ... Setting up libopenjp2-7:i386 (2.3.0-2+deb10u1) ... Setting up fasttree (2.1.10-2) ... Setting up libboost-atomic1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libtiff5:i386 (4.1.0+git191117-2~deb10u1) ... Setting up ocaml-base-nox (4.05.0-11) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up python-matplotlib-data (3.0.2-2) ... Setting up libwebpmux3:i386 (0.6.1-2) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up dialign (2.2.1-10) ... Setting up readline-common (7.0-5) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libsynctex2:i386 (2018.20181218.49446-1) ... Setting up libreadline7:i386 (7.0-5) ... Setting up prank (0.0.170427+dfsg-2) ... Setting up libargtable2-0 (13-1) ... Setting up libpotrace0:i386 (1.15-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up libhpdf-2.3.0:i386 (2.3.0+dfsg-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:i386 (3.7.3-2+deb10u1) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libwoff1:i386 (1.0.2-1) ... Setting up libboost-thread1.67.0:i386 (1.67.0-13+deb10u1) ... Setting up libpython3.7:i386 (3.7.3-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up libmbedx509-0:i386 (2.16.0-1) ... Setting up wise (2.4.1-21) ... Setting up libhwloc5:i386 (1.11.12-3) ... Setting up libpython3.7-dev:i386 (3.7.3-2+deb10u1) ... Setting up libwebpdemux2:i386 (0.6.1-2) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up libmbedtls12:i386 (2.16.0-1) ... Setting up libavahi-common3:i386 (0.7-4+b1) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up clustalo (1.2.4-2) ... Setting up dssp (3.0.0-3+b1) ... Setting up libhwloc-plugins:i386 (1.11.12-3) ... Setting up libnl-route-3-200:i386 (3.4.0-1) ... Setting up libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ... Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libptexenc1:i386 (2018.20181218.49446-1) ... Setting up libfreetype6:i386 (2.9.1-3+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up netpbm (2:10.0-15.3+b2) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libharfbuzz0b:i386 (2.3.1-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libavahi-client3:i386 (0.7-4+b1) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:i386 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up libibverbs1:i386 (22.1-1) ... Setting up libpython2.7:i386 (2.7.16-2+deb10u1) ... Setting up flex (2.6.4-6.2) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libpython2.7-dev:i386 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:i386 (2.3.1-1) ... Setting up libpython3-dev:i386 (3.7.3-1) ... Setting up libxpm4:i386 (1:3.5.12-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libpmix2:i386 (3.1.2-3) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libpq5:i386 (11.7-0+deb10u1) ... Setting up libxext6:i386 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-mysqldb (1.3.10-2) ... Setting up python3-six (1.12.0-1) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up python3-isodate (0.6.0-1) ... Setting up python3-pil:i386 (5.4.1-2+deb10u1) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up libpython3-all-dev:i386 (3.7.3-1) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-reportlab-accel:i386 (3.5.13-1+deb10u1) ... Setting up python3-psycopg2 (2.7.7-1) ... Setting up libxt6:i386 (1:1.1.5-1+b3) ... 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Setting up python-pil:i386 (5.4.1-2+deb10u1) ... Setting up libxaw7:i386 (2:1.0.13-1+b2) ... Setting up python-all (2.7.16-1) ... Setting up libcairo2:i386 (1.16.0-4) ... Setting up libcupsimage2:i386 (2.2.10-6+deb10u3) ... Setting up python-decorator (4.3.0-1.1) ... Setting up libpython-dev:i386 (2.7.16-1) ... Setting up python-renderpm:i386 (3.5.13-1+deb10u1) ... Setting up python-six (1.12.0-1) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up python-psycopg2 (2.7.7-1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-dateutil (2.7.3-3) ... Setting up python-subprocess32 (3.5.3-1) ... Setting up python3-dev (3.7.3-1) ... Setting up libgd3:i386 (2.2.5-5.2) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python-isodate (0.6.0-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-backports.functools-lru-cache (1.5-3) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python-tz (2019.1-1) ... Setting up python-kiwisolver (1.0.1-2+b1) ... Setting up emboss-lib (6.6.0+dfsg-7+b1) ... Setting up python-reportlab-accel:i386 (3.5.13-1+deb10u1) ... Setting up python-rdflib (4.2.2-2) ... Setting up python-dev (2.7.16-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libfabric1 (1.6.2-3) ... Setting up python3-matplotlib (3.0.2-2) ... Setting up python3-scipy (1.1.0-7) ... Setting up emboss (6.6.0+dfsg-7+b1) ... Setting up libgs9:i386 (9.27~dfsg-2+deb10u3) ... Setting up libpython-all-dev:i386 (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up libopenmpi3:i386 (3.1.3-11) ... Setting up python-cycler (0.10.0-1) ... Setting up ghostscript (9.27~dfsg-2+deb10u3) ... Setting up python-reportlab (3.5.13-1+deb10u1) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python-all-dev (2.7.16-1) ... Setting up python-scipy (1.1.0-7) ... Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20180621-2) ... Setting up python-matplotlib (2.2.3-6) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up texlive-latex-recommended (2018.20190227-2) ... Setting up hevea (2.32-2) ... Setting up texlive-pictures (2018.20190227-2) ... Setting up texlive-fonts-recommended (2018.20190227-2) ... Setting up texlive-latex-extra (2018.20190227-2) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-biopython-1.73+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.73+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_auto_clean pybuild --clean -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it pybuild --clean -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/build/python-biopython-1.73+dfsg/Doc' make -C install make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. No file Installation.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) LaTeX Warning: Reference `sec:windows_install' on page 1 undefined on input lin e 108. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] LaTeX Warning: Reference `sec:is_working' on page 7 undefined on input line 460 . [7] LaTeX Warning: Reference `sec:unix_install' on page 8 undefined on input line 5 37. Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . LaTeX Warning: Reference `sec:is_working' on page 8 undefined on input line 558 . Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' [8] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) Package rerunfilecheck Warning: File `Installation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 144108 bytes). Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 149864 bytes). Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 150010 bytes). Transcript written on Installation.log. hevea -fix Installation.tex Exclude comment 'comment' ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:108: Warning: Undefined label: 'sec:windows_install' ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:460: Warning: Undefined label: 'sec:is_working' ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:537: Warning: Undefined label: 'sec:unix_install' ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:558: Warning: Undefined label: 'sec:is_working' ./Installation.tex:561: Warning: '_' occurring outside math mode ./Installation.tex:609: Warning: Suppressing nested a element ./Installation.tex:609: Warning: Suppressing nested a element HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Installation.tex:55: Warning: tt_mode is an empty style ./Installation.tex:61: Warning: No date given ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:561: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' ( for f in install ; do make clean -C $f ; done ) make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f Installation.aux rm -f Installation.log rm -f Installation.out rm -f Installation.toc rm -f Installation.haux rm -f Installation.htoc make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in install ; do make distclean -C $f ; done ) make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f Installation.aux rm -f Installation.log rm -f Installation.out rm -f Installation.toc rm -f Installation.haux rm -f Installation.htoc rm -f Installation.pdf rm -f Installation.txt rm -f Installation.html make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python-biopython.substvars debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python-biopython-sql.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python-biopython/ debian/tmp/ debian/python3-biopython/ debian/python-biopython-doc/ debian/python-biopython-sql/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 2.7 I: pybuild base:217: python2.7 setup.py config running config pybuild --configure -i python{version} -p 3.7 I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_auto_build pybuild --build -i python{version} -p 2.7 I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/Index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/kNN.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/triefind.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/Seq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/File.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep copying Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype running egg_info creating biopython.egg-info writing requirements to biopython.egg-info/requires.txt writing biopython.egg-info/PKG-INFO writing top-level names to biopython.egg-info/top_level.txt writing dependency_links to biopython.egg-info/dependency_links.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/trie.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/trie.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer copying Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster copying Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree copying Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-i386-2.7 creating build/temp.linux-i386-2.7/Bio creating build/temp.linux-i386-2.7/Bio/Align i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Align/_aligners.c -o build/temp.linux-i386-2.7/Bio/Align/_aligners.o Bio/Align/_aligners.c: In function 'PathGenerator_length': Bio/Align/_aligners.c:701:22: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized] self->length = length; ~~~~~~~~~~~~~^~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/Align/_aligners.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/_aligners.so building 'Bio.cpairwise2' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-i386-2.7/Bio/cpairwise2module.o In file included from /usr/include/python2.7/Python.h:103, from Bio/cpairwise2module.c:14: Bio/cpairwise2module.c: In function 'cpairwise2__make_score_matrix_fast': /usr/include/python2.7/listobject.h:62:58: warning: 'py_trace_row' may be used uninitialized in this function [-Wmaybe-uninitialized] #define PyList_SET_ITEM(op, i, v) (((PyListObject *)(op))->ob_item[i] = (v)) ^~ Bio/cpairwise2module.c:343:34: note: 'py_trace_row' was declared here PyObject *py_score_row, *py_trace_row; ^~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/cpairwise2module.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/cpairwise2.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-i386-2.7/Bio/Nexus i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.linux-i386-2.7/Bio/Nexus/cnexus.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/Nexus/cnexus.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/cnexus.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-i386-2.7/Bio/PDB creating build/temp.linux-i386-2.7/Bio/PDB/QCPSuperimposer i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-i386-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.so building 'Bio.motifs._pwm' extension creating build/temp.linux-i386-2.7/Bio/motifs i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/motifs/_pwm.c -o build/temp.linux-i386-2.7/Bio/motifs/_pwm.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/motifs/_pwm.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/_pwm.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-i386-2.7/Bio/Cluster i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.linux-i386-2.7/Bio/Cluster/cluster.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-i386-2.7/Bio/Cluster/clustermodule.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/Cluster/cluster.o build/temp.linux-i386-2.7/Bio/Cluster/clustermodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/_cluster.so building 'Bio.PDB.kdtrees' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/PDB/kdtrees.c -o build/temp.linux-i386-2.7/Bio/PDB/kdtrees.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/PDB/kdtrees.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/kdtrees.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-i386-2.7/Bio/KDTree i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.linux-i386-2.7/Bio/KDTree/KDTree.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-i386-2.7/Bio/KDTree/KDTreemodule.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/KDTree/KDTree.o build/temp.linux-i386-2.7/Bio/KDTree/KDTreemodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/_CKDTree.so building 'Bio.trie' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/triemodule.c -o build/temp.linux-i386-2.7/Bio/triemodule.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/trie.c -o build/temp.linux-i386-2.7/Bio/trie.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-EBAgX8/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/Bio/triemodule.o build/temp.linux-i386-2.7/Bio/trie.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.so pybuild --build -i python{version} -p 3.7 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/Index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/kNN.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/triefind.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/Seq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/File.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep copying Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/trie.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/trie.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying 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Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying 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/build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer copying Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster copying Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree copying Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree running build_ext building 'Bio.Align._aligners' extension creating build/temp.linux-i386-3.7 creating build/temp.linux-i386-3.7/Bio creating build/temp.linux-i386-3.7/Bio/Align i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Align/_aligners.c -o build/temp.linux-i386-3.7/Bio/Align/_aligners.o Bio/Align/_aligners.c: In function 'PathGenerator_length': Bio/Align/_aligners.c:701:22: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized] self->length = length; ~~~~~~~~~~~~~^~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/Align/_aligners.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so building 'Bio.cpairwise2' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/cpairwise2module.c -o build/temp.linux-i386-3.7/Bio/cpairwise2module.o In file included from /usr/include/python3.7m/Python.h:108, from Bio/cpairwise2module.c:14: Bio/cpairwise2module.c: In function 'cpairwise2__make_score_matrix_fast': /usr/include/python3.7m/listobject.h:73:58: warning: 'py_trace_row' may be used uninitialized in this function [-Wmaybe-uninitialized] #define PyList_SET_ITEM(op, i, v) (((PyListObject *)(op))->ob_item[i] = (v)) ^~ Bio/cpairwise2module.c:343:34: note: 'py_trace_row' was declared here PyObject *py_score_row, *py_trace_row; ^~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/cpairwise2module.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-i386-3.7/Bio/Nexus i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Nexus/cnexus.c -o build/temp.linux-i386-3.7/Bio/Nexus/cnexus.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/Nexus/cnexus.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-i386-3.7/Bio/PDB creating build/temp.linux-i386-3.7/Bio/PDB/QCPSuperimposer i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-i386-3.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-i386-3.7/Bio/motifs i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/motifs/_pwm.c -o build/temp.linux-i386-3.7/Bio/motifs/_pwm.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/motifs/_pwm.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-i386-3.7/Bio/Cluster i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Cluster/cluster.c -o build/temp.linux-i386-3.7/Bio/Cluster/cluster.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/Cluster/clustermodule.c -o build/temp.linux-i386-3.7/Bio/Cluster/clustermodule.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/Cluster/cluster.o build/temp.linux-i386-3.7/Bio/Cluster/clustermodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so building 'Bio.PDB.kdtrees' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/PDB/kdtrees.c -o build/temp.linux-i386-3.7/Bio/PDB/kdtrees.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/PDB/kdtrees.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-i386-3.7/Bio/KDTree i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/KDTree/KDTree.c -o build/temp.linux-i386-3.7/Bio/KDTree/KDTree.o i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-i386-3.7/Bio/KDTree/KDTreemodule.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/KDTree/KDTree.o build/temp.linux-i386-3.7/Bio/KDTree/KDTreemodule.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so building 'Bio.trie' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.7m -c Bio/triemodule.c -o build/temp.linux-i386-3.7/Bio/triemodule.o Bio/triemodule.c:585:5: warning: initialization of 'Py_hash_t (*)(PyObject *)' {aka 'int (*)(struct _object *)'} from incompatible pointer type 'long int (*)(PyObject *)' {aka 'long int (*)(struct _object *)'} [-Wincompatible-pointer-types] trie_nohash, /*tp_hash */ ^~~~~~~~~~~ Bio/triemodule.c:585:5: note: (near initialization for 'Trie_Type.tp_hash') i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.7m -c Bio/trie.c -o build/temp.linux-i386-3.7/Bio/trie.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.73+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/Bio/triemodule.o build/temp.linux-i386-3.7/Bio/trie.o -o /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.cpython-37m-i386-linux-gnu.so cd Doc && make make[2]: Entering directory '/build/python-biopython-1.73+dfsg/Doc' hevea -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:110: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:114: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:115: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:116: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:117: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:118: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:119: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:237: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:250: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:converting-alignments' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:35: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:49: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:76: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:83: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_quick_start.tex:154: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:162: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:163: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:173: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:137: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:207: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:209: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:376: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:449: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:564: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:570: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:810: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:871: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick-start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:158: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:216: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:229: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:279: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:282: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:288: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:296: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:528: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:632: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:640: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:679: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:842: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:855: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick-start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:45: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'seq:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:148: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:280: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:283: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:359: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:362: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:375: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:456: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_seqio.tex:491: Warning: Undefined label: 'SeqIO:to_dict' ./Tutorial/chapter_seqio.tex:497: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:501: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:514: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:588: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:704: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:725: Warning: Undefined label: 'seq:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1097: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1154: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1164: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1205: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1224: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:115: Warning: Undefined label: 'sec:alignment-format-method' ./Tutorial/chapter_align.tex:445: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:617: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:792: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:844: Warning: Undefined label: 'sec:pairwise2' ./Tutorial/chapter_align.tex:849: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_align.tex:876: Warning: Undefined label: 'seq:emboss-needle-water' ./Tutorial/chapter_align.tex:884: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1023: Warning: Undefined label: 'sec:Phylo' ./Tutorial/chapter_align.tex:1245: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1550: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1562: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-matchscores' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1644: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1645: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1648: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1649: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1855: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:1982: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 'sec:parsing-blast-deprecated' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_blast.tex:445: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:461: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:22: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:57: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:209: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:213: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:227: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:289: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:314: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:314: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:408: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_entrez.tex:467: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:469: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:550: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:556: Warning: Undefined label: 'subsec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:767: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:767: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:884: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1035: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1038: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1042: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1083: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1128: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1180: 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_seq_annot.tex:282: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:280: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:362: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:884: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 'sec:parsing-blast-deprecated' ./Tutorial/chapter_entrez.tex:1035: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1038: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:769: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:974: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:327: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1346: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1570: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode ./Tutorial/chapter_testing.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:223: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:37: Warning: '_' occurring outside math mode HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... 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math mode ./Tutorial/chapter_contributing.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:37: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:79: Warning: '_' occurring outside math mode ./Tutorial.tex:122: Warning: line too long ./Tutorial.tex:133: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:133: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:137: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:68: Warning: tt_mode is an empty style ./Tutorial.haux:527: Giving up command: \@hevea@cbrace ./Tutorial.tex:68: Giving up command: \input ./Tutorial.tex:68: Warning: Failure while reading .haux ./Tutorial.tex:95: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:110: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:114: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:115: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:116: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:117: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:118: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:119: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:237: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:250: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:converting-alignments' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:35: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:49: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:76: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:83: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:88: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:123: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_quick_start.tex:154: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:162: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:163: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:173: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:137: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:207: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:209: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:376: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:394: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:449: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:564: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:570: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:810: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:871: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick-start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:158: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:216: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:222: Warning: line too long ./Tutorial/chapter_seq_annot.tex:229: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:279: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:282: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:288: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:296: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:528: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:534: Warning: line too long ./Tutorial/chapter_seq_annot.tex:543: Warning: line too long ./Tutorial/chapter_seq_annot.tex:632: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:640: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:657: Warning: line too long ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:679: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:699: Warning: line too long ./Tutorial/chapter_seq_annot.tex:758: Warning: line too long ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 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Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:45: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:45: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:45: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'seq:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:148: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:148: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:195: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:241: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:280: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:283: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:359: Warning: Undefined label: 'sec:SeqIO-index-bgzf' 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./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:268: Warning: Undefined label: 'sec:parsing-blast-deprecated' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:Bio.SeqIO' 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outside math mode ./Tutorial/chapter_entrez.tex:1042: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1083: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1126: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1128: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1215: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1222: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1223: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1275: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_entrez.tex:1299: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1300: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1358: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1389: Warning: Undefined label: 'subsec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1487: Warning: Undefined label: 'subsec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1492: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1516: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:10: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:29: Warning: line too long ./Tutorial/chapter_uniprot.tex:38: Warning: line too long ./Tutorial/chapter_uniprot.tex:41: Warning: Undefined label: 'subsec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:49: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:495: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:18: Warning: Undefined label: 'problem structures' ./Tutorial/chapter_pdb.tex:207: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:216: Warning: Undefined label: 'problem structures' ./Tutorial/chapter_pdb.tex:220: Warning: Image in text ./Tutorial/chapter_pdb.tex:353: Warning: Undefined label: 'hetero problems' ./Tutorial/chapter_pdb.tex:398: Warning: Undefined label: 'point mutations' ./Tutorial/chapter_pdb.tex:415: Warning: Undefined label: 'disordered atoms' ./Tutorial/chapter_pdb.tex:540: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:586: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:769: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:870: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:898: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:933: Warning: Undefined label: 'cap:DSSP-codes' ./Tutorial/chapter_pdb.tex:972: Warning: Undefined label: 'subsec:residue_depth' ./Tutorial/chapter_pdb.tex:974: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1022: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1234: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1235: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:345: Warning: line too long ./Tutorial/chapter_phylo.tex:359: Warning: Image in text ./Tutorial/chapter_phylo.tex:376: Warning: Undefined label: 'fig:phylo-dot' ./Tutorial/chapter_phylo.tex:387: Warning: Image in text ./Tutorial/chapter_phylo.tex:412: Warning: Undefined label: 'fig:phylo-rooted' ./Tutorial/chapter_phylo.tex:421: Warning: Image in text ./Tutorial/chapter_phylo.tex:428: Warning: Undefined label: 'fig:phylo-color' ./Tutorial/chapter_phylo.tex:454: Warning: Image in text ./Tutorial/chapter_phylo.tex:471: Warning: Image in text ./Tutorial/chapter_phylo.tex:473: Warning: Image in text ./Tutorial/chapter_phylo.tex:832: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:903: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:7: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:152: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:153: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:522: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:530: Warning: line too long ./Tutorial/chapter_motifs.tex:532: Warning: line too long ./Tutorial/chapter_motifs.tex:538: Warning: line too long ./Tutorial/chapter_motifs.tex:540: Warning: line too long ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:553: Warning: line too long ./Tutorial/chapter_motifs.tex:555: Warning: line too long ./Tutorial/chapter_motifs.tex:564: Warning: line too long ./Tutorial/chapter_motifs.tex:566: Warning: line too long ./Tutorial/chapter_motifs.tex:567: Warning: 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on 'x' failed ./Tutorial/chapter_cluster.tex:85: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:116: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:116: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:153: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:182: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:263: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:331: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:546: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:594: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:594: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:601: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:605: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:641: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:654: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:662: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:706: Warning: line too long ./Tutorial/chapter_cluster.tex:714: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:806: Warning: Undefined label: 'subsec:distancematrix' ./Tutorial/chapter_cluster.tex:824: Warning: Undefined label: 'subsec:clustercentroids' ./Tutorial/chapter_cluster.tex:847: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:872: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:901: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:923: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:955: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_learning.tex:38: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:38: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:39: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:69: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:69: Warning: line too long ./Tutorial/chapter_learning.tex:69: Warning: line too long ./Tutorial/chapter_learning.tex:69: Warning: line too long ./Tutorial/chapter_learning.tex:74: Warning: Undefined label: 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occurring outside math mode ./Tutorial/chapter_graphics.tex:206: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:300: Warning: Image in text ./Tutorial/chapter_graphics.tex:300: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:300: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:320: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:327: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:371: Warning: Image in text ./Tutorial/chapter_graphics.tex:371: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:406: Warning: Image in text ./Tutorial/chapter_graphics.tex:406: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:406: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:406: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:438: Warning: Image in text ./Tutorial/chapter_graphics.tex:438: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:438: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:438: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:464: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:467: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:530: Warning: Image in text ./Tutorial/chapter_graphics.tex:530: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:530: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:532: Warning: Image in text ./Tutorial/chapter_graphics.tex:532: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:532: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:557: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:562: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:571: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:574: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:576: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:647: Warning: Image in text ./Tutorial/chapter_graphics.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:671: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:678: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:762: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:801: Warning: Image in text ./Tutorial/chapter_graphics.tex:801: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:801: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:828: Warning: '_' occurring outside math mode 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mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:192: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:197: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:317: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:415: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:424: Warning: line too long ./Tutorial/chapter_cookbook.tex:429: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:449: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:519: Warning: line too long ./Tutorial/chapter_cookbook.tex:597: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:600: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:750: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:753: Warning: line too long ./Tutorial/chapter_cookbook.tex:772: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:774: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:788: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:854: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:855: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:967: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:984: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_cookbook.tex:996: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1034: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1034: Warning: '_' occurring outside math mode 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mode ./Tutorial/chapter_cookbook.tex:1350: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_cookbook.tex:1360: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1361: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1362: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1363: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1369: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1470: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1497: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1516: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_cookbook.tex:1570: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1579: Warning: '_' occurring outside math mode 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:68: Warning: tt_mode is an empty style ./Tutorial.haux:527: Giving up command: \@hevea@cbrace ./Tutorial.tex:68: Giving up command: \input ./Tutorial.tex:68: Warning: Failure while reading .haux ./Tutorial.tex:95: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:110: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:114: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:115: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:116: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:117: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:118: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:119: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:237: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:250: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_introduction.tex:292: Warning: Undefined label: 'sec:converting-alignments' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:35: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_quick_start.tex:49: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:76: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:83: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:88: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:123: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_quick_start.tex:149: Warning: Undefined label: 'chapter:Bio.AlignIO' ./Tutorial/chapter_quick_start.tex:154: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:162: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:163: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_quick_start.tex:173: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:137: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:207: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:209: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_objects.tex:376: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:394: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:449: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:564: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:570: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:719: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:810: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:871: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick-start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:158: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:216: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:222: Warning: line too long ./Tutorial/chapter_seq_annot.tex:229: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:279: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:282: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:288: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:296: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:528: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:534: Warning: line too long ./Tutorial/chapter_seq_annot.tex:543: Warning: line too long ./Tutorial/chapter_seq_annot.tex:632: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:640: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:657: Warning: line too long ./Tutorial/chapter_seq_annot.tex:676: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:679: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:699: Warning: line too long ./Tutorial/chapter_seq_annot.tex:758: Warning: line too long ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:842: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:855: Warning: Undefined label: 'chapter:Bio.SeqIO' ./Tutorial/chapter_seq_annot.tex:926: Warning: line too long ./Tutorial/chapter_seq_annot.tex:956: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick-start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:Bio.Seq' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:45: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:45: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:45: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'seq:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:148: Warning: Undefined label: 'chapter:SeqRecord' ./Tutorial/chapter_seqio.tex:148: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:195: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:241: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:280: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:283: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:359: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:362: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:374: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:375: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:451: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:454: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:456: Warning: Undefined label: 'chapter:swiss_prot' ./Tutorial/chapter_seqio.tex:491: Warning: Undefined label: 'SeqIO:to_dict' ./Tutorial/chapter_seqio.tex:497: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:501: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:514: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:588: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:704: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:725: Warning: Undefined label: 'seq:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:771: Warning: line too long ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1009: Warning: line too long ./Tutorial/chapter_seqio.tex:1016: Warning: line too long ./Tutorial/chapter_seqio.tex:1021: Warning: line too long ./Tutorial/chapter_seqio.tex:1097: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1139: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1154: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1164: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1205: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1224: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: 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entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:641: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:654: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:662: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:706: Warning: line too long ./Tutorial/chapter_cluster.tex:714: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_cluster.tex:750: Warning: line too long ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:806: Warning: Undefined label: 'subsec:distancematrix' ./Tutorial/chapter_cluster.tex:824: Warning: Undefined label: 'subsec:clustercentroids' ./Tutorial/chapter_cluster.tex:847: Warning: Undefined label: 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occurring outside math mode ./Tutorial/chapter_graphics.tex:206: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:254: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:300: Warning: Image in text ./Tutorial/chapter_graphics.tex:300: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:300: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:301: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:320: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:327: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:371: Warning: Image in text ./Tutorial/chapter_graphics.tex:371: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:384: Warning: '_' occurring 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./Tutorial/chapter_contributing.tex:79: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:84: Warning: Undefined label: 'sec:regr_test' ./Tutorial/chapter_contributing.tex:100: Warning: Undefined label: 'sec:regr_test' ./Tutorial/chapter_appendix.tex:88: Warning: Undefined label: 'sec:SeqIO_compressed' ./Tutorial.tex:122: Warning: line too long ./Tutorial.tex:133: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:133: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:137: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:202: Warning: Application of '\"' on 'u' failed Fixpoint reached in 3 step(s) pdflatex Tutorial.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Tutorial.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document 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No file Tutorial.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} <./images/biopython_logo.pdf>]pdfTeX warning (ext4): destination with the same identifier (name{page.1}) has been already us ed, duplicate ignored \relax l.97 \include{Tutorial/chapter_introduction} [1] (./Tutorial/chapter_introduction.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [2] LaTeX Warning: Citation `cock2009' on page 3 undefined on input line 110. [3] LaTeX Warning: Citation `chapman2000' on page 4 undefined on input line 114. LaTeX Warning: Citation `hamelryck2003a' on page 4 undefined on input line 115. LaTeX Warning: Citation `dehoon2004' on page 4 undefined on input line 116. LaTeX Warning: Citation `pritchard2006' on page 4 undefined on input line 117. LaTeX Warning: Citation `talevich2012' on page 4 undefined on input line 118. LaTeX Warning: Citation `cock2010' on page 4 undefined on input line 119. Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 141--147 Underfull \hbox (badness 10000) in paragraph at lines 153--155 [4 <./images/biopython_logo_old.jpg>] LaTeX Warning: Reference `sec:seq-comparison' on page 5 undefined on input line 237. [5] Overfull \hbox (2.99303pt too wide) in paragraph at lines 246--248 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . LaTeX Warning: Reference `sec:appendix-handles' on page 6 undefined on input li ne 250. [6] LaTeX Warning: Reference `sec:SeqIO-conversion' on page 7 undefined on input li ne 292. LaTeX Warning: Reference `sec:converting-alignments' on page 7 undefined on inp ut line 292. ) [7] (./Tutorial/chapter_quick_start.tex Chapter 2. LaTeX Warning: Reference `chapter:cookbook' on page 8 undefined on input line 1 4. LaTeX Warning: Reference `chapter:advanced' on page 8 undefined on input line 1 4. LaTeX Warning: Reference `chapter:Bio.Seq' on page 8 undefined on input line 19 . [8] LaTeX Warning: Reference `chapter:Bio.Seq' on page 9 undefined on input line 35 . LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 9 undefined on input line 49. LaTeX Warning: Reference `sec:sequence-parsing' on page 9 undefined on input li ne 69. LaTeX Warning: Reference `chapter:entrez' on page 9 undefined on input line 69. LaTeX Warning: Reference `chapter:swiss_prot' on page 9 undefined on input line 69. LaTeX Warning: Reference `sec:align_clustal' on page 9 undefined on input line 69. [9] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 10 undefined on input line 76. LaTeX Warning: Reference `sec:connecting-with-biological-databases' on page 10 undefined on input line 83. Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGG. ..CGC', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CATTGTTGAGATCACATAATAATTGATCGAGTTAATCTGGAGGATCTGTTTACT. ..GCC', SingleLetterAlphabet())[] [10] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 11 undefined on input line 149. LaTeX Warning: Reference `chapter:Bio.AlignIO' on page 11 undefined on input li ne 149. LaTeX Warning: Reference `chapter:cookbook' on page 11 undefined on input line 154. LaTeX Warning: Reference `chapter:entrez' on page 11 undefined on input line 16 2. LaTeX Warning: Reference `chapter:swiss_prot' on page 11 undefined on input lin e 163. [11] LaTeX Warning: Reference `chapter:cookbook' on page 12 undefined on input line 173. ) [12] (./Tutorial/chapter_seq_objects.tex Chapter 3. LaTeX Warning: Reference `chapter:SeqRecord' on page 13 undefined on input line 5. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 13 undefined on input line 5. [13] [14] LaTeX Warning: Reference `sec:mutable-seq' on page 15 undefined on input line 1 37. [15] LaTeX Warning: Reference `sec:SeqRecord-format' on page 16 undefined on input l ine 207. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 16 undefined on input line 209. [16] Overfull \hbox (39.49054pt too wide) in paragraph at lines 274--274 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] Overfull \hbox (39.49054pt too wide) in paragraph at lines 285--285 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] [17] [18] LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 19 undefined on input line 376. [19] LaTeX Warning: Reference `sec:seq-module-functions' on page 20 undefined on inp ut line 449. [20] [21] LaTeX Warning: Reference `sec:SeqIO-translate' on page 22 undefined on input li ne 564. LaTeX Warning: Reference `sec:seq-module-functions' on page 22 undefined on inp ut line 570. [22] [23] LaTeX Warning: Reference `sec:seq-to-string' on page 24 undefined on input line 719. [24] LaTeX Warning: Reference `sec:seq-to-string' on page 25 undefined on input line 810. [25] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 26 undefined on input line 871. [26]) [27] (./Tutorial/chapter_seq_annot.tex Chapter 4. LaTeX Warning: Reference `chapter:Bio.Seq' on page 28 undefined on input line 4 . LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 28 undefined on input line 4. LaTeX Warning: Reference `chapter:Bio.Seq' on page 28 undefined on input line 2 1. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 28 undefined on input line 21. LaTeX Warning: Reference `sec:FASTQ-filtering-example' on page 28 undefined on input line 34. [28] LaTeX Warning: Reference `sec:seq_features' on page 29 undefined on input line 38. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 29 undefined on input line 48. [29] Overfull \hbox (2.74086pt too wide) in paragraph at lines 129--129 []\OT1/cmtt/m/n/10 >gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence[] LaTeX Warning: Reference `chapter:quick-start' on page 30 undefined on input li ne 131. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 30 undefined on input line 133. Overfull \hbox (34.24059pt too wide) in paragraph at lines 144--144 []\OT1/cmtt/m/n/10 SingleLetterAlphabet()), id='gi|45478711|ref|NC_005816.1|', name='gi|45478711|ref|NC_005816.1|',[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 153--153 []\OT1/cmtt/m/n/10 Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG. ..CTG', SingleLetterAlphabet())[] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 30 undefined on input line 158. Overfull \hbox (7.99081pt too wide) in paragraph at lines 169--169 []\OT1/cmtt/m/n/10 'gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence'[] [30] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 31 undefined on input line 216. Overfull \hbox (7.99081pt too wide) in paragraph at lines 226--226 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 31 undefined on input line 229. [31] LaTeX Warning: Reference `sec:seq_features' on page 32 undefined on input line 279. LaTeX Warning: Reference `sec:locations' on page 32 undefined on input line 288 . LaTeX Warning: Reference `sec:locations' on page 32 undefined on input line 296 . [32] [33] [34] [35] LaTeX Warning: Reference `sec:locations' on page 36 undefined on input line 528 . Overfull \hbox (44.7405pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 >>> example_parent = Seq("ACCGAGACGGCAAAGGCTAGCATAGGTATGAGAC TTCCTTCCTGCCAGTGCTGAGGAACTGGGAGCCTAC")[] Overfull \hbox (128.73976pt too wide) in paragraph at lines 546--546 []\OT1/cmtt/m/n/10 >>> feature_seq = example_parent[example_feature.location.st art:example_feature.location.end].reverse_complement()[] [36] Overfull \hbox (165.48944pt too wide) in paragraph at lines 618--618 []\OT1/cmtt/m/n/10 NotImplementedError: SeqRecord comparison is deliberately no t implemented. Explicitly compare the attributes of interest.[] LaTeX Warning: Reference `sec:seq-comparison' on page 37 undefined on input lin e 632. LaTeX Warning: Reference `sec:locations' on page 37 undefined on input line 640 . [37] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 38 undefined on input line 676. LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 38 undefined on i nput line 679. Overfull \hbox (2.74086pt too wide) in paragraph at lines 703--703 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence',[] [38] Overfull \hbox (7.99081pt too wide) in paragraph at lines 762--762 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [39] LaTeX Warning: Reference `sec:SeqRecord-format' on page 40 undefined on input l ine 833. Overfull \hbox (39.49054pt too wide) in paragraph at lines 839--839 []\OT1/cmtt/m/n/10 >>> sub_record.description = "Yersinia pestis biovar Microtu s str. 91001 plasmid pPCP1, partial."[] LaTeX Warning: Reference `sec:FASTQ-slicing-off-primer' on page 40 undefined on input line 841. LaTeX Warning: Reference `sec:FASTQ-slicing-off-adaptor' on page 40 undefined o n input line 842. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 40 undefined on input line 855. [40] Overfull \hbox (7.99081pt too wide) in paragraph at lines 930--930 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [41] Overfull \hbox (7.99081pt too wide) in paragraph at lines 960--960 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [42] Overfull \hbox (170.7394pt too wide) in paragraph at lines 1032--1032 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (record.id, len(record), len(re cord.features), len(record.dbxrefs), len(record.annotations)))[] Overfull \hbox (65.74031pt too wide) in paragraph at lines 1042--1042 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (rc.id, len(rc), len(rc.feature s), len(rc.dbxrefs), len(rc.annotations)))[] ) [43] (./Tutorial/chapter_seqio.tex Chapter 5. LaTeX Warning: Reference `chapter:quick-start' on page 44 undefined on input li ne 4. LaTeX Warning: Reference `chapter:SeqRecord' on page 44 undefined on input line 4. LaTeX Warning: Reference `chapter:SeqRecord' on page 44 undefined on input line 13. LaTeX Warning: Reference `chapter:Bio.Seq' on page 44 undefined on input line 1 3. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 44 undefined on in put line 15. LaTeX Warning: Reference `sec:SeqIO_Online' on page 44 undefined on input line 23. LaTeX Warning: Reference `sec:appendix-handles' on page 44 undefined on input l ine 23. [44] LaTeX Warning: Reference `sec:sequence-parsing' on page 45 undefined on input l ine 45. Overfull \hbox (7.99081pt too wide) in paragraph at lines 66--66 []\OT1/cmtt/m/n/10 >>> identifiers = [seq_record.id for seq_record in SeqIO.par se("ls_orchid.gbk", "genbank")][] LaTeX Warning: Reference `seq:sequence-parsing-plus-pylab' on page 45 undefined on input line 69. [45] [46] LaTeX Warning: Reference `chapter:SeqRecord' on page 47 undefined on input line 148. [47] [48] LaTeX Warning: Reference `sec:appendix-handles' on page 49 undefined on input l ine 283. [49] LaTeX Warning: Reference `sec:SeqIO-index-bgzf' on page 50 undefined on input l ine 359. LaTeX Warning: Reference `sec:efetch' on page 50 undefined on input line 375. Overfull \hbox (18.49072pt too wide) in paragraph at lines 391--391 []\OT1/cmtt/m/n/10 with Entrez.efetch(db="nucleotide", rettype="fasta", retmode ="text", id="6273291") as handle:[] [50] Overfull \hbox (23.74068pt too wide) in paragraph at lines 438--438 [] \OT1/cmtt/m/n/10 % (len(seq_record), len(seq_record.features), seq_record.annotations["source"]))[] LaTeX Warning: Reference `chapter:entrez' on page 51 undefined on input line 45 1. LaTeX Warning: Reference `sec:entrez-guidelines' on page 51 undefined on input line 451. LaTeX Warning: Reference `chapter:swiss_prot' on page 51 undefined on input lin e 456. Overfull \hbox (18.49072pt too wide) in paragraph at lines 482--482 []\OT1/cmtt/m/n/10 RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Ful l=Naringenin-chalcone synthase 3;[] [51] LaTeX Warning: Reference `SeqIO:to_dict' on page 52 undefined on input line 491 . LaTeX Warning: Reference `sec:SeqIO-index' on page 52 undefined on input line 4 97. LaTeX Warning: Reference `sec:SeqIO-index-db' on page 52 undefined on input lin e 501. LaTeX Warning: Reference `sec:SeqIO-indexing-discussion' on page 52 undefined o n input line 504. LaTeX Warning: Reference `sec:SeqIO-index' on page 52 undefined on input line 5 14. [52] LaTeX Warning: Reference `sec:fasta-parsing' on page 53 undefined on input line 588. Overfull \hbox (34.24059pt too wide) in paragraph at lines 609--609 []\OT1/cmtt/m/n/10 orchid_dict = SeqIO.to_dict(SeqIO.parse("ls_orchid.fasta", " fasta"), key_function=get_accession)[] [53] [54] LaTeX Warning: Reference `sec:fastq-indexing' on page 55 undefined on input lin e 704. LaTeX Warning: Reference `seq:seqio-todict-functionkey' on page 55 undefined on input line 725. Overfull \hbox (9.93459pt too wide) in paragraph at lines 769--774 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / [55] LaTeX Warning: Reference `sec:SeqIO-sort' on page 56 undefined on input line 78 7. Overfull \hbox (4.48064pt too wide) in paragraph at lines 812--815 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , [56] LaTeX Warning: Reference `sec:seqio-index-getraw' on page 57 undefined on input line 869. [57] [58] [59] LaTeX Warning: Reference `sec:seqio-index-getraw' on page 60 undefined on input line 1097. [60] LaTeX Warning: Reference `sec:SeqIO-fastq-conversion' on page 61 undefined on i nput line 1139. LaTeX Warning: Reference `sec:SeqIO-fasta-qual-conversion' on page 61 undefined on input line 1139. LaTeX Warning: Reference `sec:seq-reverse-complement' on page 61 undefined on i nput line 1154. LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 61 undefine d on input line 1164. Overfull \hbox (13.24077pt too wide) in paragraph at lines 1174--1174 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1184--1184 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1192--1192 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] [61] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1203--1203 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] LaTeX Warning: Reference `sec:SeqIO-translate' on page 62 undefined on input li ne 1205. LaTeX Warning: Reference `sec:SeqRecord-format' on page 62 undefined on input l ine 1224. Overfull \hbox (19.46596pt too wide) in paragraph at lines 1240--1242 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [62] Overfull \hbox (21.32593pt too wide) in paragraph at lines 1284--1288 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator LaTeX Warning: Reference `chapter:cookbook' on page 63 undefined on input line 1303. ) [63] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 64 undefined on input l ine 31. LaTeX Warning: Reference `sec:AlignIO-count-argument' on page 64 undefined on i nput line 35. [64] [65] LaTeX Warning: Reference `sec:alignment-format-method' on page 66 undefined on input line 115. [66] [67] [68] [69] [70] [71] Overfull \hbox (5.54102pt too wide) in paragraph at lines 435--436 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/it-er-a-tor. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 72 undefined on input l ine 445. Overfull \hbox (39.68698pt too wide) in paragraph at lines 443--448 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() [72] [73] [74] LaTeX Warning: Reference `sec:SeqRecord-format' on page 75 undefined on input l ine 617. Overfull \hbox (16.49278pt too wide) in paragraph at lines 619--622 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . [75] [76] LaTeX Warning: Reference `sec:SeqRecord-addition' on page 77 undefined on input line 792. [77] LaTeX Warning: Reference `sec:pairwise2' on page 78 undefined on input line 844 . LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 78 undefined on input line 849. LaTeX Warning: Reference `seq:emboss-needle-water' on page 78 undefined on inpu t line 876. [78] [79] LaTeX Warning: Reference `sec:Phylo' on page 80 undefined on input line 1023. [80] Overfull \hbox (8.40039pt too wide) in paragraph at lines 1057--1061 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO [81] [82] LaTeX Warning: Reference `sec:appendix-handles' on page 83 undefined on input l ine 1245. [83] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1316--1316 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [84] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1364--1364 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [85] [86] LaTeX Warning: Citation `durbin1998' on page 87 undefined on input line 1550. [87] LaTeX Warning: Reference `sec:pairwise-aligner' on page 88 undefined on input l ine 1562. [88] LaTeX Warning: Reference `sec:pairwise-matchscores' on page 89 undefined on inp ut line 1644. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 89 undefined o n input line 1644. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 89 undefined on input line 1644. LaTeX Warning: Reference `sec:pairwise-basic' on page 89 undefined on input lin e 1645. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 89 undefined o n input line 1648. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 89 undefined on input line 1649. [89] Overfull \hbox (175.46193pt too wide) in paragraph at lines 1776--1813 [][] [90] [91] [92] LaTeX Warning: Reference `sec:pairwise-examples' on page 93 undefined on input line 1855. [93] [94] LaTeX Warning: Citation `kent2002' on page 95 undefined on input line 1982. Overfull \hbox (19.80069pt too wide) in paragraph at lines 2013--2014 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) [95] [96]) [97] (./Tutorial/chapter_blast.tex Chapter 7. LaTeX Warning: Reference `chapter:searchio' on page 98 undefined on input line 18. [98] LaTeX Warning: Reference `sec:parsing-blast' on page 99 undefined on input line 58. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 99 undefined on input line 119. LaTeX Warning: Reference `sec:parsing-blast' on page 99 undefined on input line 124. [99] LaTeX Warning: Reference `sec:parsing-blast' on page 100 undefined on input lin e 146. LaTeX Warning: Reference `sec:parsing-blast' on page 100 undefined on input lin e 155. LaTeX Warning: Reference `sec:running-www-blast' on page 100 undefined on input line 164. LaTeX Warning: Reference `sec:alignment-tools' on page 100 undefined on input l ine 192. [100] LaTeX Warning: Reference `sec:parsing-blast' on page 101 undefined on input lin e 236. LaTeX Warning: Reference `sec:parsing-blast-deprecated' on page 101 undefined o n input line 268. LaTeX Warning: Reference `sec:running-www-blast' on page 101 undefined on input line 282. LaTeX Warning: Reference `sec:running-local-blast' on page 101 undefined on inp ut line 284. [101] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 102 undefined on input lin e 335. LaTeX Warning: Reference `chapter:Bio.AlignIO' on page 102 undefined on input l ine 335. [102] Overfull \hbox (55.2404pt too wide) in paragraph at lines 436--436 []\OT1/cmtt/m/n/10 sequence: >gb|AF283004.1|AF283004 Arabidopsis thaliana cold acclimation protein WCOR413-like protein[] [103] LaTeX Warning: Reference `fig:blastrecord' on page 104 undefined on input line 445. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:psiblastrecord' on page 104 undefined on input li ne 461. Excluding 'htmlonly' comment.) [104] [105 <./images/BlastRecord.png>] [106 <./i mages/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. [107] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult [108] [109] [110] [111] [112] Overfull \hbox (44.7405pt too wide) in paragraph at lines 462--462 []\OT1/cmtt/m/n/10 ... hit.id = hit.id.split("|")[3] # renames "gi|301171 322|ref|NR_035857.1|" to "NR_035857.1"[] [113] [114] [115] [116] Overfull \hbox (469.98679pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='42291', name='aligned query sequence' , description='mystery_seq', dbxrefs=[])[] Overfull \hbox (769.23418pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] LaTeX Warning: Reference `chapter:SeqRecord' on page 117 undefined on input lin e 734. Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment [117] [118] Overfull \hbox (65.74031pt too wide) in paragraph at lines 870--870 []\OT1/cmtt/m/n/10 >>> blat_hsp2.hit_inter_ranges # start and end coordinates of intervening regions in the hit sequence[] [119] Overfull \hbox (769.23418pt too wide) in paragraph at lines 962--962 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] [120] Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , LaTeX Warning: Reference `sec:SeqIO-index' on page 121 undefined on input line 1082. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . [121] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 >>> idx = SearchIO.index("tab_2226_tblastn_001.txt", "blast- tab", key_function=key_function)[] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse [122]) [123] (./Tutorial/chapter_entrez.tex Chapter 9. LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 124 undefined on input line 22. [124] LaTeX Warning: Reference `sec:entrez-webenv' on page 125 undefined on input lin e 57. LaTeX Warning: Reference `sec:BioSQL' on page 125 undefined on input line 60. [125] [126] [127] LaTeX Warning: Reference `sec:efetch' on page 128 undefined on input line 209. LaTeX Warning: Reference `sec:entrez-einfo' on page 128 undefined on input line 213. Overfull \hbox (70.99026pt too wide) in paragraph at lines 224--224 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae[Orgn] AND matK[Gene]", idtype="acc")[] LaTeX Warning: Reference `sec:efetch' on page 128 undefined on input line 227. [128] LaTeX Warning: Reference `sec:entrez-webenv' on page 129 undefined on input lin e 289. [129] LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 130 undefined on in put line 314. LaTeX Warning: Reference `sec:efetch' on page 130 undefined on input line 314. [130] [131] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 132 undefined on input lin e 408. Overfull \hbox (13.24077pt too wide) in paragraph at lines 450--450 [] \OT1/cmtt/m/n/10 net_handle = Entrez.efetch(db="nucleotide", id="EU490707 ", rettype="gb", retmode="text")[] [132] LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 133 undefined on input line 467. LaTeX Warning: Reference `sec:entrez-webenv' on page 133 undefined on input lin e 469. [133] LaTeX Warning: Reference `sec:elink-citations' on page 134 undefined on input l ine 550. LaTeX Warning: Reference `subsec:entrez_example_genbank' on page 134 undefined on input line 556. [134] [135] Overfull \hbox (312.48816pt too wide) in paragraph at lines 677--677 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.NotXMLError: Failed to parse the XML data (syntax error: line 1, column 0). Please make sure that the input data are in X ML format.[] [136] Overfull \hbox (249.48871pt too wide) in paragraph at lines 698--698 []\OT1/cmtt/m/n/10 [] Overfull \hbox (370.23766pt too wide) in paragraph at lines 705--705 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.CorruptedXMLError: Failed to parse the XML data (no element found: line 16, column 0). Please make sure that the input da ta are not corrupted.[] Overfull \hbox (249.48871pt too wide) in paragraph at lines 736--736 []\OT1/cmtt/m/n/10 [] [137] Overfull \hbox (585.48578pt too wide) in paragraph at lines 748--748 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.ValidationError: Failed to find tag 'Docsu mList' in the DTD. To skip all tags that are not represented in the DTD, please call Bio.Entrez.read or Bio.Entrez.parse with validate=False.[] LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 138 undefined on in put line 767. LaTeX Warning: Reference `sec:efetch' on page 138 undefined on input line 767. [138] [139] LaTeX Warning: Reference `sec:entrez-webenv' on page 140 undefined on input lin e 884. [140] Overfull \hbox (133.98972pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 EXPRESS bone| connective tissue| intestine| liver| live r tumor| normal| soft tissue/muscle tissue tumor| adult[] Overfull \hbox (102.48999pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 SEQUENCE ACC=BG569293.1; NID=g13576946; CLONE=IMAGE:47225 96; END=5'; LID=6989; SEQTYPE=EST; TRACE=44157214[] [141] Overfull \hbox (160.23949pt too wide) in paragraph at lines 992--992 []\OT1/cmtt/m/n/10 ['bone', 'connective tissue', 'intestine', 'liver', 'liver t umor', 'normal', 'soft tissue/muscle tissue tumor', 'adult'][] [142] LaTeX Warning: Reference `sec:orchids' on page 143 undefined on input line 1042 . LaTeX Warning: Reference `sec:entrez-webenv' on page 143 undefined on input lin e 1083. [143] LaTeX Warning: Reference `sec:orchids' on page 144 undefined on input line 1128 . Overfull \hbox (23.74068pt too wide) in paragraph at lines 1152--1152 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae", retmax=814, idtype="acc")[] [144] LaTeX Warning: Reference `sec:entrez-webenv' on page 145 undefined on input lin e 1180. [145] LaTeX Warning: Reference `sec:entrez-webenv' on page 146 undefined on input lin e 1215. LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 146 undefined on in put line 1222. LaTeX Warning: Reference `sec:entrez-webenv' on page 146 undefined on input lin e 1223. [146] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 147 undefined on input lin e 1275. LaTeX Warning: Reference `sec:entrez-guidelines' on page 147 undefined on input line 1299. LaTeX Warning: Reference `sec:entrez-webenv' on page 147 undefined on input lin e 1300. [147] LaTeX Warning: Reference `sec:entrez-search-fetch-genbank' on page 148 undefine d on input line 1358. [148] LaTeX Warning: Reference `subsec:entrez_example_genbank' on page 149 undefined on input line 1389. [149] LaTeX Warning: Reference `subsec:entrez-and-medline' on page 150 undefined on i nput line 1487. LaTeX Warning: Reference `sec:elink' on page 150 undefined on input line 1492. [150] LaTeX Warning: Reference `sec:entrez-webenv' on page 151 undefined on input lin e 1516. ) [151] (./Tutorial/chapter_uniprot.tex Chapter 10. LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 152 undefined on input line 10. Overfull \hbox (216.73924pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserc ontent.com/biopython/biopython/master/Tests/SwissProt/F2CXE6.txt"))[] Overfull \hbox (137.98993pt too wide) in paragraph at lines 39--39 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/bio python/biopython/master/Tests/SwissProt/F2CXE6.txt")[] LaTeX Warning: Reference `subsec:expasy_swissprot' on page 152 undefined on inp ut line 41. [152] LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 153 undefined on input line 49. Overfull \hbox (270.48853pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 SubName: Full=Plasma membrane intrinsic protein {ECO:0000313 |EMBL:BAN04711.1}; SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ87517.1 };[] Overfull \hbox (359.73775pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 authors: Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamo ri H., Kurita K., Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K ., Itoh T., Sato K.[] Overfull \hbox (86.74013pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Comprehensive sequence analysis of 24,783 barley full -length cDNAs derived from 12 clone libraries.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (7.99081pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Functional characterization of a novel plasma membran e intrinsic protein2 in barley.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] [153] [154] [155] [156] [157] LaTeX Warning: Reference `sec:orchids' on page 158 undefined on input line 347. [158] Overfull \hbox (24.29903pt too wide) in paragraph at lines 366--367 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) Overfull \hbox (65.93893pt too wide) in paragraph at lines 409--410 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord [159] Overfull \hbox (133.98972pt too wide) in paragraph at lines 493--493 []\OT1/cmtt/m/n/10 {'signature_ac': u'PS50948', 'level': u'0', 'stop': 98, 'seq uence_ac': u'USERSEQ1', 'start': 16, 'score': u'8.873'}[] [160]) [161] (./Tutorial/chapter_pdb.tex Chapter 11. LaTeX Warning: Reference `problem structures' on page 162 undefined on input li ne 18. [162] [163] Overfull \hbox (13.022pt too wide) in paragraph at lines 194--196 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/-Mod-el/Chain/Residue/A tom) [164] LaTeX Warning: Reference `fig:smcra' on page 165 undefined on input line 207. LaTeX Warning: Reference `problem structures' on page 165 undefined on input li ne 216. Excluding 'htmlonly' comment. [165] [166 <./images/smcra.png (PNG copy)>] [167] LaTeX Warning: Reference `hetero problems' on page 168 undefined on input line 353. LaTeX Warning: Reference `point mutations' on page 168 undefined on input line 398. LaTeX Warning: Reference `disordered atoms' on page 168 undefined on input line 415. [168] [169] LaTeX Warning: Reference `fig:smcra' on page 170 undefined on input line 540. [170] LaTeX Warning: Reference `fig:smcra' on page 171 undefined on input line 586. [171] [172] [173] [174] LaTeX Warning: Citation `golub1989' on page 175 undefined on input line 870. [175] LaTeX Warning: Citation `hamelryck2005' on page 176 undefined on input line 898 . LaTeX Warning: Command \r invalid in math mode on input line 901. LaTeX Warning: Reference `cap:DSSP-codes' on page 176 undefined on input line 9 33. LaTeX Warning: Reference `subsec:residue_depth' on page 176 undefined on input line 972. [176] LaTeX Warning: Citation `hamelryck2003a' on page 177 undefined on input line 10 22. [177] [178] [179] LaTeX Warning: Citation `hamelryck2003b' on page 180 undefined on input line 12 34. LaTeX Warning: Citation `majumdar2005' on page 180 undefined on input line 1235 . [180]) [181] (./Tutorial/chapter_popgen.tex Chapter 12. [182]) [183] (./Tutorial/chapter_phylo.tex Chapter 13. LaTeX Warning: Citation `talevich2012' on page 184 undefined on input line 9. [184] LaTeX Warning: Reference `fig:phylo-simple-draw' on page 185 undefined on input line 96. Excluding 'htmlonly' comment. [185] Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor LaTeX Warning: Reference `fig:phylo-color-draw' on page 186 undefined on input line 192. [186 <./images/phylo-simple-draw.png>] Excluding 'htmlonly' comment. [187 <./im ages/phylo-color-draw.png>] [188] Overfull \hbox (406.98734pt too wide) in paragraph at lines 328--328 []\OT1/cmtt/m/n/10 Phylogeny(description='phyloXML allows to use either a "bran ch_length" attribute...', name='example from Prof. Joe Felsenstein's book "Infe rring Phyl...', rooted=True)[] Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-dot' on page 189 undefined on input line 37 6. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-rooted' on page 189 undefined on input line 412. Excluding 'htmlonly' comment. 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That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [194] [195] Overfull \hbox (4.04672pt too wide) in paragraph at lines 825--828 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- LaTeX Warning: Reference `sec:alignment-tools' on page 196 undefined on input l ine 832. [196] LaTeX Warning: Reference `sec:PhyloXML' on page 197 undefined on input line 903 . [197]) [198] (./Tutorial/chapter_motifs.tex Chapter 14. LaTeX Warning: Reference `sec:links' on page 199 undefined on input line 7. [199] [200] LaTeX Warning: Citation `cornish1985' on page 201 undefined on input line 152. LaTeX Warning: Citation `cavener1987' on page 201 undefined on input line 153. [201] [202] Overfull \hbox (128.73976pt too wide) in paragraph at lines 270--270 []\OT1/cmtt/m/n/10 [Seq('CACGTG', IUPACUnambiguousDNA()), Seq('CACGTG', IUPACUn ambiguousDNA()), Seq('CACGTG', IUPACUnambiguousDNA())][] [203] [204] [205] [206] [207] LaTeX Warning: Citation `bailey1994' on page 208 undefined on input line 522. [208] Overfull \hbox (13.10551pt too wide) in paragraph at lines 582--586 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . [209] [210] LaTeX Warning: Citation `matys2003' on page 211 undefined on input line 658. [211] LaTeX Warning: Reference `table:transfaccodes' on page 212 undefined on input l ine 733. LaTeX Warning: `h' float specifier changed to `ht'. [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223]) [224] (./Tutorial/chapter_cluster.tex Chapter 15. LaTeX Warning: Citation `dehoon2004' on page 225 undefined on input line 5. LaTeX Warning: Citation `lecuyer1988' on page 225 undefined on input line 29. LaTeX Warning: Citation `kachitvichyanukul1988' on page 225 undefined on input line 29. [225] [226] [227] LaTeX Warning: Citation `snedecor1989' on page 228 undefined on input line 153. [228] LaTeX Warning: Reference `sec:distancefunctions' on page 229 undefined on input line 182. [229] Overfull \hbox (78.60634pt too wide) in paragraph at lines 230--231 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ [230] LaTeX Warning: Reference `sec:distancefunctions' on page 231 undefined on input line 263. [231] [232] LaTeX Warning: Reference `sec:distancefunctions' on page 233 undefined on input line 331. [233] [234] Overfull \hbox (16.73593pt too wide) in paragraph at lines 413--414 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, [235] [236] LaTeX Warning: Reference `sec:distancefunctions' on page 237 undefined on input line 546. [237] LaTeX Warning: Citation `kohonen1997' on page 238 undefined on input line 594. LaTeX Warning: Citation `tamayo1999' on page 238 undefined on input line 594. [238] [239] LaTeX Warning: Reference `sec:distancefunctions' on page 240 undefined on input line 641. Overfull \hbox (106.77225pt too wide) in paragraph at lines 648--650 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ LaTeX Warning: Citation `yeung2001' on page 240 undefined on input line 654. LaTeX Warning: Citation `golub1971' on page 240 undefined on input line 662. [240] Overfull \hbox (175.98935pt too wide) in paragraph at lines 707--707 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserco ntent.com/biopython/biopython/master/Tests/Cluster/cyano.txt"))[] Overfull \hbox (97.24004pt too wide) in paragraph at lines 715--715 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/biop ython/biopython/master/Tests/Cluster/cyano.txt")[] [241] Overfull \hbox (25.39864pt too wide) in paragraph at lines 740--751 [] [242] LaTeX Warning: Reference `sec:distancefunctions' on page 243 undefined on input line 803. LaTeX Warning: Reference `subsec:distancematrix' on page 243 undefined on input line 806. LaTeX Warning: Reference `subsec:clustercentroids' on page 243 undefined on inp ut line 824. [243] LaTeX Warning: Reference `sec:distancefunctions' on page 244 undefined on input line 847. LaTeX Warning: Reference `sec:distancefunctions' on page 244 undefined on input line 872. [244] LaTeX Warning: Reference `sec:distancefunctions' on page 245 undefined on input line 901. [245] LaTeX Warning: Reference `sec:distancefunctions' on page 246 undefined on input line 923. Overfull \hbox (106.77225pt too wide) in paragraph at lines 930--932 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [246] LaTeX Warning: Citation `hihara2001' on page 247 undefined on input line 955. ) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--111 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [247] (./Tutorial/chapter_learning.tex Chapter 16. [248] LaTeX Warning: Reference `eq:OP' on page 249 undefined on input line 39. LaTeX Warning: Reference `eq:NOP' on page 249 undefined on input line 39. 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LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 271 undefined on inpu t line 658. LaTeX Warning: Citation `proux2002' on page 271 undefined on input line 678. [271 <./images/three_track_simple.png>] [272] Overfull \hbox (28.99063pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 color = colors.linearlyInterpolatedColor(colors.whit e, colors.firebrick, 0, 100, score)[] Overfull \hbox (2.65141pt too wide) in paragraph at lines 784--790 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 273 undefined on input li ne 805. LaTeX Warning: Reference `sec:gd_cross_links' on page 273 undefined on input li ne 812. LaTeX Warning: Reference `sec:gd_cross_links' on page 273 undefined on input li ne 812. Excluding 'htmlonly' comment. 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[284] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['A12']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['B01'], WellReco rd['C01'], ..., WellRecord['H01']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['C03']')[] [285] [286] [287]) [288] (./Tutorial/chapter_cookbook.tex Chapter 20. LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 289 undefined on input lin e 22. [289] LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 290 undefined on i nput line 58. [290] LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 291 undefined on input line 146. LaTeX Warning: Reference `sec:translation' on page 291 undefined on input line 192. 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[309 <./images/SRR001666.png>] [310] Overfull \hbox (49.0755pt too wide) in paragraph at lines 1460--1461 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . [311] LaTeX Warning: Reference `sec:summary_info' on page 312 undefined on input line 1497. LaTeX Warning: Reference `sec:freq_table' on page 312 undefined on input line 1 516. [312] LaTeX Warning: Reference `sec:align_clustal' on page 313 undefined on input lin e 1603. LaTeX Warning: Reference `sec:summary_info' on page 313 undefined on input line 1603. [313] LaTeX Warning: Reference `chapter:Bio.SeqIO' on page 314 undefined on input lin e 1701. [314]) [315] (./Tutorial/chapter_testing.tex Chapter 21. LaTeX Warning: Reference `section:doctest' on page 316 undefined on input line 49. [316] [317] [318] [319] [320] [321] LaTeX Warning: Reference `section:doctest' on page 322 undefined on input line 409. [322] (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd)) [323] (./Tutorial/chapter_advanced.tex Chapter 22. [324] [325] LaTeX Warning: Reference `sec:freq_table' on page 326 undefined on input line 1 63. Overfull \hbox (30.74179pt too wide) in paragraph at lines 198--199 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor [326] [327]) [328] (./Tutorial/chapter_contributing.tex Chapter 23. LaTeX Warning: Reference `chapter:cookbook' on page 329 undefined on input line 31. [329] LaTeX Warning: Reference `sec:regr_test' on page 330 undefined on input line 84 . LaTeX Warning: Reference `sec:regr_test' on page 330 undefined on input line 10 0. [330]) [331] (./Tutorial/chapter_appendix.tex Chapter 24. 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Transcript written on Tutorial.log. pdflatex Tutorial.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Tutorial.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 65. 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Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{33}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 141--147 Underfull \hbox (badness 10000) in paragraph at lines 153--155 [11 <./images/biopython_logo_old.jpg>] [12] Overfull \hbox (2.99303pt too wide) in paragraph at lines 246--248 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [13]) [14] (./Tutorial/chapter_quick_start.tex Chapter 2. [15] [16] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGG. ..CGC', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CATTGTTGAGATCACATAATAATTGATCGAGTTAATCTGGAGGATCTGTTTACT. ..GCC', SingleLetterAlphabet())[] [17] [18]) [19] (./Tutorial/chapter_seq_objects.tex Chapter 3. [20] [21] [22] [23] Overfull \hbox (39.49054pt too wide) in paragraph at lines 274--274 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] Overfull \hbox (39.49054pt too wide) in paragraph at lines 285--285 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33]) [34] (./Tutorial/chapter_seq_annot.tex Chapter 4. [35] [36] Overfull \hbox (2.74086pt too wide) in paragraph at lines 129--129 []\OT1/cmtt/m/n/10 >gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence[] Overfull \hbox (34.24059pt too wide) in paragraph at lines 144--144 []\OT1/cmtt/m/n/10 SingleLetterAlphabet()), id='gi|45478711|ref|NC_005816.1|', name='gi|45478711|ref|NC_005816.1|',[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 153--153 []\OT1/cmtt/m/n/10 Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG. ..CTG', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 169--169 []\OT1/cmtt/m/n/10 'gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence'[] [37] Overfull \hbox (7.99081pt too wide) in paragraph at lines 226--226 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [38] [39] [40] [41] [42] Overfull \hbox (44.7405pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 >>> example_parent = Seq("ACCGAGACGGCAAAGGCTAGCATAGGTATGAGAC TTCCTTCCTGCCAGTGCTGAGGAACTGGGAGCCTAC")[] Overfull \hbox (128.73976pt too wide) in paragraph at lines 546--546 []\OT1/cmtt/m/n/10 >>> feature_seq = example_parent[example_feature.location.st art:example_feature.location.end].reverse_complement()[] [43] Overfull \hbox (165.48944pt too wide) in paragraph at lines 618--618 []\OT1/cmtt/m/n/10 NotImplementedError: SeqRecord comparison is deliberately no t implemented. Explicitly compare the attributes of interest.[] [44] Overfull \hbox (2.74086pt too wide) in paragraph at lines 703--703 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence',[] [45] Overfull \hbox (7.99081pt too wide) in paragraph at lines 762--762 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [46] Overfull \hbox (39.49054pt too wide) in paragraph at lines 839--839 []\OT1/cmtt/m/n/10 >>> sub_record.description = "Yersinia pestis biovar Microtu s str. 91001 plasmid pPCP1, partial."[] [47] Overfull \hbox (7.99081pt too wide) in paragraph at lines 930--930 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [48] Overfull \hbox (7.99081pt too wide) in paragraph at lines 960--960 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [49] Overfull \hbox (170.7394pt too wide) in paragraph at lines 1032--1032 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (record.id, len(record), len(re cord.features), len(record.dbxrefs), len(record.annotations)))[] Overfull \hbox (65.74031pt too wide) in paragraph at lines 1042--1042 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (rc.id, len(rc), len(rc.feature s), len(rc.dbxrefs), len(rc.annotations)))[] ) [50] (./Tutorial/chapter_seqio.tex Chapter 5. [51] Overfull \hbox (7.99081pt too wide) in paragraph at lines 66--66 []\OT1/cmtt/m/n/10 >>> identifiers = [seq_record.id for seq_record in SeqIO.par se("ls_orchid.gbk", "genbank")][] [52] [53] [54] [55] [56] Overfull \hbox (18.49072pt too wide) in paragraph at lines 391--391 []\OT1/cmtt/m/n/10 with Entrez.efetch(db="nucleotide", rettype="fasta", retmode ="text", id="6273291") as handle:[] [57] Overfull \hbox (23.74068pt too wide) in paragraph at lines 438--438 [] \OT1/cmtt/m/n/10 % (len(seq_record), len(seq_record.features), seq_record.annotations["source"]))[] Overfull \hbox (18.49072pt too wide) in paragraph at lines 482--482 []\OT1/cmtt/m/n/10 RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Ful l=Naringenin-chalcone synthase 3;[] [58] [59] Overfull \hbox (34.24059pt too wide) in paragraph at lines 609--609 []\OT1/cmtt/m/n/10 orchid_dict = SeqIO.to_dict(SeqIO.parse("ls_orchid.fasta", " fasta"), key_function=get_accession)[] [60] [61] Overfull \hbox (9.93459pt too wide) in paragraph at lines 769--774 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / [62] Overfull \hbox (4.48064pt too wide) in paragraph at lines 812--815 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , [63] [64] [65] [66] [67] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1174--1174 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1184--1184 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1192--1192 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] [68] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1203--1203 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (19.46596pt too wide) in paragraph at lines 1240--1242 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [69] Overfull \hbox (21.32593pt too wide) in paragraph at lines 1284--1288 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator ) [70] (./Tutorial/chapter_align.tex Chapter 6. [71] [72] [73] [74] [75] [76] [77] [78] Overfull \hbox (5.54102pt too wide) in paragraph at lines 435--436 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/it-er-a-tor. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 443--448 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() [79] [80] [81] Overfull \hbox (16.49278pt too wide) in paragraph at lines 619--622 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . [82] [83] [84] [85] [86] [87] Overfull \hbox (8.40039pt too wide) in paragraph at lines 1057--1061 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO [88] [89] [90] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1316--1316 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [91] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1364--1364 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [92] [93] [94] [95] [96] Overfull \hbox (175.46193pt too wide) in paragraph at lines 1776--1813 [][] [97] [98] [99] [100] [101] Overfull \hbox (19.80069pt too wide) in paragraph at lines 2013--2014 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) [102] [103]) [104] (./Tutorial/chapter_blast.tex Chapter 7. [105] [106] [107] LaTeX Warning: Reference `sec:parsing-blast-deprecated' on page 108 undefined o n input line 268. [108] [109] Overfull \hbox (55.2404pt too wide) in paragraph at lines 436--436 []\OT1/cmtt/m/n/10 sequence: >gb|AF283004.1|AF283004 Arabidopsis thaliana cold acclimation protein WCOR413-like protein[] [110] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment.) [111] [112 <./images/BlastRecord.png>] [113 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. [114] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult [115] [116] [117] [118] [119] Overfull \hbox (44.7405pt too wide) in paragraph at lines 462--462 []\OT1/cmtt/m/n/10 ... hit.id = hit.id.split("|")[3] # renames "gi|301171 322|ref|NR_035857.1|" to "NR_035857.1"[] [120] [121] [122] [123] Overfull \hbox (469.98679pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='42291', name='aligned query sequence' , description='mystery_seq', dbxrefs=[])[] Overfull \hbox (769.23418pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment [124] [125] Overfull \hbox (65.74031pt too wide) in paragraph at lines 870--870 []\OT1/cmtt/m/n/10 >>> blat_hsp2.hit_inter_ranges # start and end coordinates of intervening regions in the hit sequence[] [126] Overfull \hbox (769.23418pt too wide) in paragraph at lines 962--962 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] [127] Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . [128] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 >>> idx = SearchIO.index("tab_2226_tblastn_001.txt", "blast- tab", key_function=key_function)[] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse [129]) [130] (./Tutorial/chapter_entrez.tex Chapter 9. [131] [132] [133] [134] Overfull \hbox (70.99026pt too wide) in paragraph at lines 224--224 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae[Orgn] AND matK[Gene]", idtype="acc")[] [135] [136] [137] [138] Overfull \hbox (13.24077pt too wide) in paragraph at lines 450--450 [] \OT1/cmtt/m/n/10 net_handle = Entrez.efetch(db="nucleotide", id="EU490707 ", rettype="gb", retmode="text")[] [139] [140] [141] [142] Overfull \hbox (312.48816pt too wide) in paragraph at lines 677--677 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.NotXMLError: Failed to parse the XML data (syntax error: line 1, column 0). Please make sure that the input data are in X ML format.[] [143] Overfull \hbox (249.48871pt too wide) in paragraph at lines 698--698 []\OT1/cmtt/m/n/10 [] Overfull \hbox (370.23766pt too wide) in paragraph at lines 705--705 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.CorruptedXMLError: Failed to parse the XML data (no element found: line 16, column 0). Please make sure that the input da ta are not corrupted.[] Overfull \hbox (249.48871pt too wide) in paragraph at lines 736--736 []\OT1/cmtt/m/n/10 [] [144] Overfull \hbox (585.48578pt too wide) in paragraph at lines 748--748 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.ValidationError: Failed to find tag 'Docsu mList' in the DTD. To skip all tags that are not represented in the DTD, please call Bio.Entrez.read or Bio.Entrez.parse with validate=False.[] [145] [146] [147] Overfull \hbox (133.98972pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 EXPRESS bone| connective tissue| intestine| liver| live r tumor| normal| soft tissue/muscle tissue tumor| adult[] Overfull \hbox (102.48999pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 SEQUENCE ACC=BG569293.1; NID=g13576946; CLONE=IMAGE:47225 96; END=5'; LID=6989; SEQTYPE=EST; TRACE=44157214[] [148] Overfull \hbox (160.23949pt too wide) in paragraph at lines 992--992 []\OT1/cmtt/m/n/10 ['bone', 'connective tissue', 'intestine', 'liver', 'liver t umor', 'normal', 'soft tissue/muscle tissue tumor', 'adult'][] [149] [150] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1152--1152 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae", retmax=814, idtype="acc")[] [151] [152] [153] [154] [155] [156] [157]) [158] (./Tutorial/chapter_uniprot.tex Chapter 10. Overfull \hbox (216.73924pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserc ontent.com/biopython/biopython/master/Tests/SwissProt/F2CXE6.txt"))[] Overfull \hbox (137.98993pt too wide) in paragraph at lines 39--39 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/bio python/biopython/master/Tests/SwissProt/F2CXE6.txt")[] [159] Overfull \hbox (270.48853pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 SubName: Full=Plasma membrane intrinsic protein {ECO:0000313 |EMBL:BAN04711.1}; SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ87517.1 };[] Overfull \hbox (359.73775pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 authors: Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamo ri H., Kurita K., Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K ., Itoh T., Sato K.[] Overfull \hbox (86.74013pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Comprehensive sequence analysis of 24,783 barley full -length cDNAs derived from 12 clone libraries.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (7.99081pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Functional characterization of a novel plasma membran e intrinsic protein2 in barley.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] [160] [161] [162] [163] [164] [165] Overfull \hbox (24.29903pt too wide) in paragraph at lines 366--367 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) Overfull \hbox (65.93893pt too wide) in paragraph at lines 409--410 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord [166] Overfull \hbox (133.98972pt too wide) in paragraph at lines 493--493 []\OT1/cmtt/m/n/10 {'signature_ac': u'PS50948', 'level': u'0', 'stop': 98, 'seq uence_ac': u'USERSEQ1', 'start': 16, 'score': u'8.873'}[] [167]) [168] (./Tutorial/chapter_pdb.tex Chapter 11. [169] [170] Overfull \hbox (13.022pt too wide) in paragraph at lines 194--196 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/-Mod-el/Chain/Residue/A tom) [171] Excluding 'htmlonly' comment. [172] [173 <./images/smcra.png (PNG copy)>] [174] [175] [176] [177] [178] [179] [180] [181] [182] LaTeX Warning: Command \r invalid in math mode on input line 901. [183] [184] [185] [186] [187]) [188] (./Tutorial/chapter_popgen.tex Chapter 12. [189]) [190] (./Tutorial/chapter_phylo.tex Chapter 13. [191] Excluding 'htmlonly' comment. [192] Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor [193 <./images/phylo-simple-draw.png>] Excluding 'htmlonly' comment. [194 <./im ages/phylo-color-draw.png>] [195] Overfull \hbox (406.98734pt too wide) in paragraph at lines 328--328 []\OT1/cmtt/m/n/10 Phylogeny(description='phyloXML allows to use either a "bran ch_length" attribute...', name='example from Prof. Joe Felsenstein's book "Infe rring Phyl...', rooted=True)[] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [196] [197 <./images/phylo-draw-example.png> <./i mages/phylo-dot.png>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [198 <./images/phylo-rooted.png> <./images/phylo- color.png>] [199 <./images/phylo-apaf.png> <./images/phylo-apaf-zoom.png>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 559--566 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [200] Overfull \hbox (13.48741pt too wide) in paragraph at lines 614--617 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [201] [202] Overfull \hbox (4.04672pt too wide) in paragraph at lines 825--828 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [203] [204]) [205] (./Tutorial/chapter_motifs.tex Chapter 14. [206] [207] [208] [209] Overfull \hbox (128.73976pt too wide) in paragraph at lines 270--270 []\OT1/cmtt/m/n/10 [Seq('CACGTG', IUPACUnambiguousDNA()), Seq('CACGTG', IUPACUn ambiguousDNA()), Seq('CACGTG', IUPACUnambiguousDNA())][] [210] [211] [212] [213] [214] [215] Overfull \hbox (13.10551pt too wide) in paragraph at lines 582--586 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . [216] [217] [218] LaTeX Warning: `h' float specifier changed to `ht'. [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230]) [231] (./Tutorial/chapter_cluster.tex Chapter 15. [232] [233] [234] [235] [236] Overfull \hbox (78.60634pt too wide) in paragraph at lines 230--231 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ [237] [238] [239] [240] [241] Overfull \hbox (16.73593pt too wide) in paragraph at lines 413--414 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, [242] [243] [244] [245] [246] Overfull \hbox (106.77225pt too wide) in paragraph at lines 648--650 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [247] Overfull \hbox (175.98935pt too wide) in paragraph at lines 707--707 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserco ntent.com/biopython/biopython/master/Tests/Cluster/cyano.txt"))[] Overfull \hbox (97.24004pt too wide) in paragraph at lines 715--715 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/biop ython/biopython/master/Tests/Cluster/cyano.txt")[] [248] Overfull \hbox (25.39864pt too wide) in paragraph at lines 740--751 [] [249] [250] [251] [252] Overfull \hbox (106.77225pt too wide) in paragraph at lines 930--932 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [253]) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--111 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [254] (./Tutorial/chapter_learning.tex Chapter 16. [255] [256] [257] [258] [259] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. [260] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. [261] [262]) [263] (./Tutorial/chapter_graphics.tex Chapter 17. [264] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [265] [266 <./images/plasmid_linear.png (PNG copy)> <./images/plasmid_circular.png (P NG copy)>] [267] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [268] [269 <./images/GD_sigil_labels.png (PNG copy)>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [270] [271 <./images/GD_sigils.png>] [272 <./imag es/GD_sigil_arrow_shafts.png>] Excluding 'htmlonly' comment. [273 <./images/GD_ sigil_arrow_heads.png>] [274] Excluding 'htmlonly' comment. [275 <./images/plas mid_linear_nice.png (PNG copy)>] [276 <./images/plasmid_circular_nice.png>] Overfull \hbox (2.74086pt too wide) in paragraph at lines 605--605 []\OT1/cmtt/m/n/10 A_colors = [red]*5 + [grey]*7 + [orange]*2 + [grey]*2 + [ora nge] + [grey]*11 + [green]*4 \[] [277] Excluding 'htmlonly' comment. [278 <./images/three_track_simple.png>] [279] Overfull \hbox (28.99063pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 color = colors.linearlyInterpolatedColor(colors.whit e, colors.firebrick, 0, 100, score)[] Overfull \hbox (2.65141pt too wide) in paragraph at lines 784--790 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [280] [281 <./image s/three_track_cl.png>] [282 <./images/three_track_cl2a.png>] [283] [284 <./imag es/simple_chrom.pdf> <./images/tRNA_chrom.pdf>] [285] Excluding 'htmlonly' comment. [286] Excluding 'htmlonly' comment.) [287] (./Tutorial/chapter_kegg.tex Chapter 18. [288] [289]) [290] (./Tutorial/chapter_phenotype.tex Chapter 19. [291] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['A12']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['B01'], WellReco rd['C01'], ..., WellRecord['H01']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['C03']')[] [292] [293] [294]) [295] (./Tutorial/chapter_cookbook.tex Chapter 20. [296] [297] [298] [299] [300] [301] Overfull \hbox (5.83499pt too wide) in paragraph at lines 426--430 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator Overfull \hbox (4.57849pt too wide) in paragraph at lines 444--446 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [302] [303] [304] [305] Overfull \hbox (7.99081pt too wide) in paragraph at lines 765--765 []\OT1/cmtt/m/n/10 Seq('GTCCCAGTATTCGGATTTGTCTGCCAAAACAATGAAATTGACACAGTTTACAAC. ..CCG', SingleLetterAlphabet())[] [306] [307] [308] [309] Excluding 'htmlonly' comment. Overfull \hbox (4.00363pt too wide) in paragraph at lines 1057--1060 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) [310] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [311 <./image s/hist_plot.png>] [312 <./images/gc_plot.png>] Excluding 'htmlonly' comment. [313 <./images/dot_plot.png>] Excluding 'htmlonly' comment. [314] Excluding 'htmlonly' comment. [315 <./images/dot_plot_scatter.png>] [316 <./ima ges/SRR001666.png>] [317] Overfull \hbox (49.0755pt too wide) in paragraph at lines 1460--1461 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . [318] [319] [320] [321]) [322] (./Tutorial/chapter_testing.tex Chapter 21. [323] [324] [325] [326] [327] [328] [329] (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd)) [330] (./Tutorial/chapter_advanced.tex Chapter 22. [331] [332] Overfull \hbox (30.74179pt too wide) in paragraph at lines 198--199 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor [333] [334]) [335] (./Tutorial/chapter_contributing.tex Chapter 23. [336] [337]) [338] (./Tutorial/chapter_appendix.tex Chapter 24. [339]) [340] [341] [342] [343] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on Tutorial.pdf (344 pages, 2486423 bytes). Transcript written on Tutorial.log. pdflatex Tutorial.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Tutorial.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 65. 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Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{40}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 141--147 Underfull \hbox (badness 10000) in paragraph at lines 153--155 [11 <./images/biopython_logo_old.jpg>] [12] Overfull \hbox (2.99303pt too wide) in paragraph at lines 246--248 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [13]) [14] (./Tutorial/chapter_quick_start.tex Chapter 2. [15] [16] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGG. ..CGC', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 117--117 []\OT1/cmtt/m/n/10 Seq('CATTGTTGAGATCACATAATAATTGATCGAGTTAATCTGGAGGATCTGTTTACT. ..GCC', SingleLetterAlphabet())[] [17] [18]) [19] (./Tutorial/chapter_seq_objects.tex Chapter 3. [20] [21] [22] [23] Overfull \hbox (39.49054pt too wide) in paragraph at lines 274--274 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] Overfull \hbox (39.49054pt too wide) in paragraph at lines 285--285 []\OT1/cmtt/m/n/10 >>> list_of_seqs = [Seq("ACGT", generic_dna), Seq("AACC", ge neric_dna), Seq("GGTT", generic_dna)][] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33]) [34] (./Tutorial/chapter_seq_annot.tex Chapter 4. [35] [36] Overfull \hbox (2.74086pt too wide) in paragraph at lines 129--129 []\OT1/cmtt/m/n/10 >gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence[] Overfull \hbox (34.24059pt too wide) in paragraph at lines 144--144 []\OT1/cmtt/m/n/10 SingleLetterAlphabet()), id='gi|45478711|ref|NC_005816.1|', name='gi|45478711|ref|NC_005816.1|',[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 153--153 []\OT1/cmtt/m/n/10 Seq('TGTAACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGG. ..CTG', SingleLetterAlphabet())[] Overfull \hbox (7.99081pt too wide) in paragraph at lines 169--169 []\OT1/cmtt/m/n/10 'gi|45478711|ref|NC_005816.1| Yersinia pestis biovar Microtu s ... pPCP1, complete sequence'[] [37] Overfull \hbox (7.99081pt too wide) in paragraph at lines 226--226 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [38] [39] [40] [41] [42] Overfull \hbox (44.7405pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 >>> example_parent = Seq("ACCGAGACGGCAAAGGCTAGCATAGGTATGAGAC TTCCTTCCTGCCAGTGCTGAGGAACTGGGAGCCTAC")[] Overfull \hbox (128.73976pt too wide) in paragraph at lines 546--546 []\OT1/cmtt/m/n/10 >>> feature_seq = example_parent[example_feature.location.st art:example_feature.location.end].reverse_complement()[] [43] Overfull \hbox (165.48944pt too wide) in paragraph at lines 618--618 []\OT1/cmtt/m/n/10 NotImplementedError: SeqRecord comparison is deliberately no t implemented. Explicitly compare the attributes of interest.[] [44] Overfull \hbox (2.74086pt too wide) in paragraph at lines 703--703 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence',[] [45] Overfull \hbox (7.99081pt too wide) in paragraph at lines 762--762 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [46] Overfull \hbox (39.49054pt too wide) in paragraph at lines 839--839 []\OT1/cmtt/m/n/10 >>> sub_record.description = "Yersinia pestis biovar Microtu s str. 91001 plasmid pPCP1, partial."[] [47] Overfull \hbox (7.99081pt too wide) in paragraph at lines 930--930 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [48] Overfull \hbox (7.99081pt too wide) in paragraph at lines 960--960 []\OT1/cmtt/m/n/10 description='Yersinia pestis biovar Microtus str. 91001 plas mid pPCP1, complete sequence.',[] [49] Overfull \hbox (170.7394pt too wide) in paragraph at lines 1032--1032 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (record.id, len(record), len(re cord.features), len(record.dbxrefs), len(record.annotations)))[] Overfull \hbox (65.74031pt too wide) in paragraph at lines 1042--1042 []\OT1/cmtt/m/n/10 >>> print("%s %i %i %i %i" % (rc.id, len(rc), len(rc.feature s), len(rc.dbxrefs), len(rc.annotations)))[] ) [50] (./Tutorial/chapter_seqio.tex Chapter 5. [51] Overfull \hbox (7.99081pt too wide) in paragraph at lines 66--66 []\OT1/cmtt/m/n/10 >>> identifiers = [seq_record.id for seq_record in SeqIO.par se("ls_orchid.gbk", "genbank")][] [52] [53] [54] [55] [56] Overfull \hbox (18.49072pt too wide) in paragraph at lines 391--391 []\OT1/cmtt/m/n/10 with Entrez.efetch(db="nucleotide", rettype="fasta", retmode ="text", id="6273291") as handle:[] [57] Overfull \hbox (23.74068pt too wide) in paragraph at lines 438--438 [] \OT1/cmtt/m/n/10 % (len(seq_record), len(seq_record.features), seq_record.annotations["source"]))[] Overfull \hbox (18.49072pt too wide) in paragraph at lines 482--482 []\OT1/cmtt/m/n/10 RecName: Full=Chalcone synthase 3; EC=2.3.1.74; AltName: Ful l=Naringenin-chalcone synthase 3;[] [58] [59] Overfull \hbox (34.24059pt too wide) in paragraph at lines 609--609 []\OT1/cmtt/m/n/10 orchid_dict = SeqIO.to_dict(SeqIO.parse("ls_orchid.fasta", " fasta"), key_function=get_accession)[] [60] [61] Overfull \hbox (9.93459pt too wide) in paragraph at lines 769--774 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / [62] Overfull \hbox (4.48064pt too wide) in paragraph at lines 812--815 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , [63] [64] [65] [66] [67] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1174--1174 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1184--1184 []\OT1/cmtt/m/n/10 >>> records = [rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1192--1192 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] [68] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1203--1203 []\OT1/cmtt/m/n/10 >>> records = (rec.reverse_complement(id="rc_"+rec.id, descr iption = "reverse complement") \[] Overfull \hbox (19.46596pt too wide) in paragraph at lines 1240--1242 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [69] Overfull \hbox (21.32593pt too wide) in paragraph at lines 1284--1288 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator ) [70] (./Tutorial/chapter_align.tex Chapter 6. [71] [72] [73] [74] [75] [76] [77] [78] Overfull \hbox (5.54102pt too wide) in paragraph at lines 435--436 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/it-er-a-tor. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 443--448 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() [79] [80] [81] Overfull \hbox (16.49278pt too wide) in paragraph at lines 619--622 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . [82] [83] [84] [85] [86] [87] Overfull \hbox (8.40039pt too wide) in paragraph at lines 1057--1061 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO [88] [89] [90] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1316--1316 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [91] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1364--1364 []\OT1/cmtt/m/n/10 needle -outfile=needle.txt -asequence=alpha.faa -bsequence=b eta.faa -gapopen=10 -gapextend=0.5[] [92] [93] [94] [95] [96] Overfull \hbox (175.46193pt too wide) in paragraph at lines 1776--1813 [][] [97] [98] [99] [100] [101] Overfull \hbox (19.80069pt too wide) in paragraph at lines 2013--2014 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) [102] [103]) [104] (./Tutorial/chapter_blast.tex Chapter 7. [105] [106] [107] LaTeX Warning: Reference `sec:parsing-blast-deprecated' on page 108 undefined o n input line 268. [108] [109] Overfull \hbox (55.2404pt too wide) in paragraph at lines 436--436 []\OT1/cmtt/m/n/10 sequence: >gb|AF283004.1|AF283004 Arabidopsis thaliana cold acclimation protein WCOR413-like protein[] [110] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment.) [111] [112 <./images/BlastRecord.png>] [113 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. [114] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult [115] [116] [117] [118] [119] Overfull \hbox (44.7405pt too wide) in paragraph at lines 462--462 []\OT1/cmtt/m/n/10 ... hit.id = hit.id.split("|")[3] # renames "gi|301171 322|ref|NR_035857.1|" to "NR_035857.1"[] [120] [121] [122] [123] Overfull \hbox (469.98679pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='42291', name='aligned query sequence' , description='mystery_seq', dbxrefs=[])[] Overfull \hbox (769.23418pt too wide) in paragraph at lines 731--731 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment [124] [125] Overfull \hbox (65.74031pt too wide) in paragraph at lines 870--870 []\OT1/cmtt/m/n/10 >>> blat_hsp2.hit_inter_ranges # start and end coordinates of intervening regions in the hit sequence[] [126] Overfull \hbox (769.23418pt too wide) in paragraph at lines 962--962 []\OT1/cmtt/m/n/10 SeqRecord(seq=Seq('CCCTCTACAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGA AAGTGCTTCCTTT...GGG', DNAAlphabet()), id='gi|262205317|ref|NR_030195.1|', name= 'aligned hit sequence', description='Homo sapiens microRNA 520b (MIR520B), micr oRNA', dbxrefs=[])[] [127] Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . [128] Overfull \hbox (13.24077pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 >>> idx = SearchIO.index("tab_2226_tblastn_001.txt", "blast- tab", key_function=key_function)[] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse [129]) [130] (./Tutorial/chapter_entrez.tex Chapter 9. [131] [132] [133] [134] Overfull \hbox (70.99026pt too wide) in paragraph at lines 224--224 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae[Orgn] AND matK[Gene]", idtype="acc")[] [135] [136] [137] [138] Overfull \hbox (13.24077pt too wide) in paragraph at lines 450--450 [] \OT1/cmtt/m/n/10 net_handle = Entrez.efetch(db="nucleotide", id="EU490707 ", rettype="gb", retmode="text")[] [139] [140] [141] [142] Overfull \hbox (312.48816pt too wide) in paragraph at lines 677--677 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.NotXMLError: Failed to parse the XML data (syntax error: line 1, column 0). Please make sure that the input data are in X ML format.[] [143] Overfull \hbox (249.48871pt too wide) in paragraph at lines 698--698 []\OT1/cmtt/m/n/10 [] Overfull \hbox (370.23766pt too wide) in paragraph at lines 705--705 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.CorruptedXMLError: Failed to parse the XML data (no element found: line 16, column 0). Please make sure that the input da ta are not corrupted.[] Overfull \hbox (249.48871pt too wide) in paragraph at lines 736--736 []\OT1/cmtt/m/n/10 [] [144] Overfull \hbox (585.48578pt too wide) in paragraph at lines 748--748 []\OT1/cmtt/m/n/10 Bio.Entrez.Parser.ValidationError: Failed to find tag 'Docsu mList' in the DTD. To skip all tags that are not represented in the DTD, please call Bio.Entrez.read or Bio.Entrez.parse with validate=False.[] [145] [146] [147] Overfull \hbox (133.98972pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 EXPRESS bone| connective tissue| intestine| liver| live r tumor| normal| soft tissue/muscle tissue tumor| adult[] Overfull \hbox (102.48999pt too wide) in paragraph at lines 970--970 []\OT1/cmtt/m/n/10 SEQUENCE ACC=BG569293.1; NID=g13576946; CLONE=IMAGE:47225 96; END=5'; LID=6989; SEQTYPE=EST; TRACE=44157214[] [148] Overfull \hbox (160.23949pt too wide) in paragraph at lines 992--992 []\OT1/cmtt/m/n/10 ['bone', 'connective tissue', 'intestine', 'liver', 'liver t umor', 'normal', 'soft tissue/muscle tissue tumor', 'adult'][] [149] [150] Overfull \hbox (23.74068pt too wide) in paragraph at lines 1152--1152 []\OT1/cmtt/m/n/10 >>> handle = Entrez.esearch(db="nucleotide", term="Cypripedi oideae", retmax=814, idtype="acc")[] [151] [152] [153] [154] [155] [156] [157]) [158] (./Tutorial/chapter_uniprot.tex Chapter 10. Overfull \hbox (216.73924pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserc ontent.com/biopython/biopython/master/Tests/SwissProt/F2CXE6.txt"))[] Overfull \hbox (137.98993pt too wide) in paragraph at lines 39--39 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/bio python/biopython/master/Tests/SwissProt/F2CXE6.txt")[] [159] Overfull \hbox (270.48853pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 SubName: Full=Plasma membrane intrinsic protein {ECO:0000313 |EMBL:BAN04711.1}; SubName: Full=Predicted protein {ECO:0000313|EMBL:BAJ87517.1 };[] Overfull \hbox (359.73775pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 authors: Matsumoto T., Tanaka T., Sakai H., Amano N., Kanamo ri H., Kurita K., Kikuta A., Kamiya K., Yamamoto M., Ikawa H., Fujii N., Hori K ., Itoh T., Sato K.[] Overfull \hbox (86.74013pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Comprehensive sequence analysis of 24,783 barley full -length cDNAs derived from 12 clone libraries.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (7.99081pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 title: Functional characterization of a novel plasma membran e intrinsic protein2 in barley.[] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] Overfull \hbox (553.98605pt too wide) in paragraph at lines 79--79 []\OT1/cmtt/m/n/10 ['Eukaryota', 'Viridiplantae', 'Streptophyta', 'Embryophyta' , 'Tracheophyta', 'Spermatophyta', 'Magnoliophyta', 'Liliopsida', 'Poales', 'Po aceae', 'BEP clade', 'Pooideae', 'Triticeae', 'Hordeum'][] [160] [161] [162] [163] [164] [165] Overfull \hbox (24.29903pt too wide) in paragraph at lines 366--367 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) Overfull \hbox (65.93893pt too wide) in paragraph at lines 409--410 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord [166] Overfull \hbox (133.98972pt too wide) in paragraph at lines 493--493 []\OT1/cmtt/m/n/10 {'signature_ac': u'PS50948', 'level': u'0', 'stop': 98, 'seq uence_ac': u'USERSEQ1', 'start': 16, 'score': u'8.873'}[] [167]) [168] (./Tutorial/chapter_pdb.tex Chapter 11. [169] [170] Overfull \hbox (13.022pt too wide) in paragraph at lines 194--196 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/-Mod-el/Chain/Residue/A tom) [171] Excluding 'htmlonly' comment. [172] [173 <./images/smcra.png (PNG copy)>] [174] [175] [176] [177] [178] [179] [180] [181] [182] LaTeX Warning: Command \r invalid in math mode on input line 901. [183] [184] [185] [186] [187]) [188] (./Tutorial/chapter_popgen.tex Chapter 12. [189]) [190] (./Tutorial/chapter_phylo.tex Chapter 13. [191] Excluding 'htmlonly' comment. [192] Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor [193 <./images/phylo-simple-draw.png>] Excluding 'htmlonly' comment. [194 <./im ages/phylo-color-draw.png>] [195] Overfull \hbox (406.98734pt too wide) in paragraph at lines 328--328 []\OT1/cmtt/m/n/10 Phylogeny(description='phyloXML allows to use either a "bran ch_length" attribute...', name='example from Prof. Joe Felsenstein's book "Infe rring Phyl...', rooted=True)[] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [196] [197 <./images/phylo-draw-example.png> <./i mages/phylo-dot.png>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [198 <./images/phylo-rooted.png> <./images/phylo- color.png>] [199 <./images/phylo-apaf.png> <./images/phylo-apaf-zoom.png>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 559--566 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [200] Overfull \hbox (13.48741pt too wide) in paragraph at lines 614--617 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [201] [202] Overfull \hbox (4.04672pt too wide) in paragraph at lines 825--828 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [203] [204]) [205] (./Tutorial/chapter_motifs.tex Chapter 14. [206] [207] [208] [209] Overfull \hbox (128.73976pt too wide) in paragraph at lines 270--270 []\OT1/cmtt/m/n/10 [Seq('CACGTG', IUPACUnambiguousDNA()), Seq('CACGTG', IUPACUn ambiguousDNA()), Seq('CACGTG', IUPACUnambiguousDNA())][] [210] [211] [212] [213] [214] [215] Overfull \hbox (13.10551pt too wide) in paragraph at lines 582--586 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . [216] [217] [218] LaTeX Warning: `h' float specifier changed to `ht'. [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230]) [231] (./Tutorial/chapter_cluster.tex Chapter 15. [232] [233] [234] [235] [236] Overfull \hbox (78.60634pt too wide) in paragraph at lines 230--231 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ [237] [238] [239] [240] [241] Overfull \hbox (16.73593pt too wide) in paragraph at lines 413--414 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, [242] [243] [244] [245] [246] Overfull \hbox (106.77225pt too wide) in paragraph at lines 648--650 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [247] Overfull \hbox (175.98935pt too wide) in paragraph at lines 707--707 []\OT1/cmtt/m/n/10 >>> handle = TextIOWrapper(urlopen("https://raw.githubuserco ntent.com/biopython/biopython/master/Tests/Cluster/cyano.txt"))[] Overfull \hbox (97.24004pt too wide) in paragraph at lines 715--715 []\OT1/cmtt/m/n/10 >>> handle = urlopen("https://raw.githubusercontent.com/biop ython/biopython/master/Tests/Cluster/cyano.txt")[] [248] Overfull \hbox (25.39864pt too wide) in paragraph at lines 740--751 [] [249] [250] [251] [252] Overfull \hbox (106.77225pt too wide) in paragraph at lines 930--932 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ [253]) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--111 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [254] (./Tutorial/chapter_learning.tex Chapter 16. [255] [256] [257] [258] [259] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 278. [260] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 286. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 298. [261] [262]) [263] (./Tutorial/chapter_graphics.tex Chapter 17. [264] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [265] [266 <./images/plasmid_linear.png (PNG copy)> <./images/plasmid_circular.png (P NG copy)>] [267] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [268] [269 <./images/GD_sigil_labels.png (PNG copy)>] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [270] [271 <./images/GD_sigils.png>] [272 <./imag es/GD_sigil_arrow_shafts.png>] Excluding 'htmlonly' comment. [273 <./images/GD_ sigil_arrow_heads.png>] [274] Excluding 'htmlonly' comment. [275 <./images/plas mid_linear_nice.png (PNG copy)>] [276 <./images/plasmid_circular_nice.png>] Overfull \hbox (2.74086pt too wide) in paragraph at lines 605--605 []\OT1/cmtt/m/n/10 A_colors = [red]*5 + [grey]*7 + [orange]*2 + [grey]*2 + [ora nge] + [grey]*11 + [green]*4 \[] [277] Excluding 'htmlonly' comment. [278 <./images/three_track_simple.png>] [279] Overfull \hbox (28.99063pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 color = colors.linearlyInterpolatedColor(colors.whit e, colors.firebrick, 0, 100, score)[] Overfull \hbox (2.65141pt too wide) in paragraph at lines 784--790 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [280] [281 <./image s/three_track_cl.png>] [282 <./images/three_track_cl2a.png>] [283] [284 <./imag es/simple_chrom.pdf> <./images/tRNA_chrom.pdf>] [285] Excluding 'htmlonly' comment. [286] Excluding 'htmlonly' comment.) [287] (./Tutorial/chapter_kegg.tex Chapter 18. [288] [289]) [290] (./Tutorial/chapter_phenotype.tex Chapter 19. [291] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['A12']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['B01'], WellReco rd['C01'], ..., WellRecord['H01']')[] Overfull \hbox (48.7407pt too wide) in paragraph at lines 102--102 []\OT1/cmtt/m/n/10 PlateRecord('WellRecord['A01'], WellRecord['A02'], WellReco rd['A03'], ..., WellRecord['C03']')[] [292] [293] [294]) [295] (./Tutorial/chapter_cookbook.tex Chapter 20. [296] [297] [298] [299] [300] [301] Overfull \hbox (5.83499pt too wide) in paragraph at lines 426--430 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator Overfull \hbox (4.57849pt too wide) in paragraph at lines 444--446 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [302] [303] [304] [305] Overfull \hbox (7.99081pt too wide) in paragraph at lines 765--765 []\OT1/cmtt/m/n/10 Seq('GTCCCAGTATTCGGATTTGTCTGCCAAAACAATGAAATTGACACAGTTTACAAC. ..CCG', SingleLetterAlphabet())[] [306] [307] [308] [309] Excluding 'htmlonly' comment. Overfull \hbox (4.00363pt too wide) in paragraph at lines 1057--1060 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) [310] Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [311 <./image s/hist_plot.png>] [312 <./images/gc_plot.png>] Excluding 'htmlonly' comment. [313 <./images/dot_plot.png>] Excluding 'htmlonly' comment. [314] Excluding 'htmlonly' comment. [315 <./images/dot_plot_scatter.png>] [316 <./ima ges/SRR001666.png>] [317] Overfull \hbox (49.0755pt too wide) in paragraph at lines 1460--1461 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . [318] [319] [320] [321]) [322] (./Tutorial/chapter_testing.tex Chapter 21. [323] [324] [325] [326] [327] [328] [329] (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd)) [330] (./Tutorial/chapter_advanced.tex Chapter 22. [331] [332] Overfull \hbox (30.74179pt too wide) in paragraph at lines 198--199 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor [333] [334]) [335] (./Tutorial/chapter_contributing.tex Chapter 23. [336] [337]) [338] (./Tutorial/chapter_appendix.tex Chapter 24. [339]) [340] [341] [342] [343] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb> Output written on Tutorial.pdf (344 pages, 2486417 bytes). Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. 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[9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 805. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 960--964 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 968--973 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide LaTeX Warning: Reference `cap:DSSP-codes' on page 11 undefined on input line 99 0. [11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1097--1098 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1118--1123 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1280--1288 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. 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The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1097--1098 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1118--1123 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1280--1288 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 163990 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (./biopdb_faq.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 257--262 \T1/pbk/l/n/10 file to their val-ues. 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The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1097--1098 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1118--1123 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1280--1288 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 163990 bytes). Transcript written on biopdb_faq.log. make -C install make[3]: Entering directory '/build/python-biopython-1.73+dfsg/Doc/install' pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. 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Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . LaTeX Warning: Reference `sec:is_working' on page 8 undefined on input line 558 . Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' [8] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) Package rerunfilecheck Warning: File `Installation.out' has changed. 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Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 149864 bytes). Transcript written on Installation.log. pdflatex Installation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./Installation.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 52. (./Installation.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./Installation.out) (./Installation.out) (./Installation.toc) [1{/var/lib/texm f/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] [4] [5] [6] [7] Overfull \hbox (9.0224pt too wide) in paragraph at lines 540--541 []\OT1/cmr/m/n/10 For Python 2.6 we cur-rently use Mi-crosoft's free VC++ 2008 Ex-press Edi-tion from [][]$\OT1/cmtt/m/n/10 http : / / www . microsoft . [8] Overfull \hbox (27.57379pt too wide) in paragraph at lines 563--565 [][]\OT1/cmtt/m/n/10 PYTHONPATH []\OT1/cmr/m/n/10 with some-thing like [][]\OT1 /cmtt/m/n/10 export PYTHONPATH = $PYTHONPATH':/directory/where/you/put/Biopytho n' (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (9.6602pt too wide) in paragraph at lines 600--601 []\OT1/cmr/m/n/10 NCBI Stan-dalone BLAST, which can used with the [][]\OT1/cmtt /m/n/10 Bio.Blast []\OT1/cmr/m/n/10 mod-ule and parsed with the [][]\OT1/cmtt/m /n/10 Bio.SearchIO [9] [10] (./Installation.aux) ) (see the transcript file for additional information) Output written on Installation.pdf (10 pages, 150010 bytes). Transcript written on Installation.log. hevea -fix Installation.tex Exclude comment 'comment' ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:108: Warning: Undefined label: 'sec:windows_install' ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:460: Warning: Undefined label: 'sec:is_working' ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:537: Warning: Undefined label: 'sec:unix_install' ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:558: Warning: Undefined label: 'sec:is_working' ./Installation.tex:561: Warning: '_' occurring outside math mode ./Installation.tex:609: Warning: Suppressing nested a element ./Installation.tex:609: Warning: Suppressing nested a element HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:67: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:114: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:140: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:218: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:230: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:255: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:314: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:317: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:387: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:400: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:406: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:413: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:419: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:421: Warning: Suppressing nested a element ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:456: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:467: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:497: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:516: Warning: Suppressing nested a element ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:540: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:548: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:556: Warning: Suppressing nested a element ./Installation.tex:561: Warning: '_' occurring outside math mode ./Installation.tex:609: Warning: Suppressing nested a element ./Installation.tex:609: Warning: Suppressing nested a element Fixpoint reached in 2 step(s) hevea -fix -text Installation.tex Exclude comment 'comment' ./Installation.tex:55: Warning: tt_mode is an empty style ./Installation.tex:61: Warning: No date given ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:561: Warning: '_' occurring outside math mode HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Installation.tex:55: Warning: tt_mode is an empty style ./Installation.tex:61: Warning: No date given ./Installation.tex:430: Warning: '_' occurring outside math mode ./Installation.tex:535: Warning: '_' occurring outside math mode ./Installation.tex:561: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc/install' make[2]: Leaving directory '/build/python-biopython-1.73+dfsg/Doc' make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python-biopython.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-biopython-1.73+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_DFDist PopGen_FDist PopGen_GenePop PopGen_GenePop_EasyController PopGen_SimCoal XXmotif_tool BWA_tool raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 phyml_tool \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_PopGen_DFDist.py': No such file or directory mv: cannot stat 'Tests/test_PopGen_FDist.py': No such file or directory mv: cannot stat 'Tests/test_PopGen_SimCoal.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 2.7 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:217: set -e; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/home; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc; \ cp -a Doc/Tutorial /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc; \ cp -a Doc/examples /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc; \ cp -a Tests /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build; \ cd /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/home python2.7 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_FSSP ... ok test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GenomeDiagram ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ makeblastdb and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -blastdb_version) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -subject_besthit) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) ok test_NCBI_qblast ... skipping. internet not available test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... ok test_PDBList ... skipping. internet not available test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFParser ... ok test_PDB_Polypetide ... ok test_PDB_ResidueDepth ... skipping. Install MSMS if you want to use it in Biopython. test_PDB_StructureAlignment ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 13298. PDBConstructionWarning) /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 13344. PDBConstructionWarning) ok test_PDB_Superimposer ... ok test_PDB_vectors ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... skipping. Under Python 2 this test needs the unittest2 library test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_mmtf ... skipping. Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_mmtf_online ... skipping. Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise_aligner ... ok test_phenotype ... ok test_phenotype_fit ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython test_seq ... skipping. Under Python 2 this test needs the unittest2 library test_translate ... ok test_trie ... ok Bio.Align docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Alphabet.Reduced docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonalphabet docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqFeature docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.py:2609: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future. BiopythonWarning) ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.SwissProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.SVDSuperimposer docstring test ... ok ---------------------------------------------------------------------- Ran 259 tests in 228.895 seconds Skipping any tests requiring internet access Python version: 2.7.16 (default, Oct 10 2019, 22:02:15) [GCC 8.3.0] Operating system: posix linux2 pybuild --test -i python{version} -p 3.7 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:217: set -e; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/home; \ mkdir -p /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc; \ cp -a Doc/Tutorial /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc; \ cp -a Doc/examples /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc; \ cp -a Tests /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build; \ cd /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/home python3.7 run_tests.py --offline x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_FSSP ... ok test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GenomeDiagram ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ makeblastdb and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -blastdb_version) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -subject_besthit) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py:401: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-subject_besthit,-taxidlist,-taxids) ",".join(sorted(missing)))) ok test_NCBI_qblast ... skipping. internet not available test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... ok test_PDBList ... skipping. internet not available test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFParser ... ok test_PDB_Polypetide ... ok test_PDB_ResidueDepth ... skipping. Install MSMS if you want to use it in Biopython. test_PDB_StructureAlignment ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 13298. PDBConstructionWarning) /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureBuilder.py:91: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 13344. PDBConstructionWarning) ok test_PDB_Superimposer ... ok test_PDB_vectors ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/Scanner.py:287: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? BiopythonParserWarning) ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_mmtf ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_mmtf_online ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise_aligner ... ok test_phenotype ... ok test_phenotype_fit ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython test_seq ... ok test_translate ... ok test_trie ... ok Bio.Align docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Alphabet.Reduced docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonalphabet docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.Seq docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2589: BiopythonWarning: This table contains 2 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TGA' -> 'W' or STOP). Such codons will be translated as amino acid. BiopythonWarning) ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqFeature docstring test ... /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py:2609: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future. BiopythonWarning) ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.SwissProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.SVDSuperimposer docstring test ... ok ---------------------------------------------------------------------- Ran 260 tests in 188.436 seconds Skipping any tests requiring internet access Python version: 3.7.3 (default, Dec 20 2019, 18:57:59) [GCC 8.3.0] Operating system: posix linux mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python-biopython.substvars debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python-biopython-sql.substvars debian/python3-biopython-sql.substvars rm -fr -- debian/.debhelper/generated/python-biopython/ debian/python-biopython/ debian/tmp/ debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/.debhelper/generated/python-biopython-doc/ debian/python-biopython-doc/ debian/.debhelper/generated/python-biopython-sql/ debian/python-biopython-sql/ debian/.debhelper/generated/python3-biopython-sql/ debian/python3-biopython-sql/ rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python-biopython.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_auto_install install -d /build/python-biopython-1.73\+dfsg/debian/tmp pybuild --install -i python{version} -p 2.7 --dest-dir /build/python-biopython-1.73\+dfsg/debian/tmp I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-biopython-1.73+dfsg/debian/tmp running install running build running build_py running egg_info writing requirements to biopython.egg-info/requires.txt writing biopython.egg-info/PKG-INFO writing top-level names to biopython.egg-info/top_level.txt writing dependency_links to biopython.egg-info/dependency_links.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ACT_example.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/opuntia.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/fasta_dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/nmr/simplepredict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/nmr/noed.xpk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/PF05371_seed.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/my_blat.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ec_5.4.2.2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/simple.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/swissprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/opuntia.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/my_blast.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/fasta_iterator.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/m_cold.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/make_subsmat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/beta.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/alpha.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/www_blast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/ls_orchid.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/clustal_run.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/examples/getgene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_contributing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_graphics.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_testing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_learning.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seqio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_blast.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_introduction.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cookbook.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_advanced.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_kegg.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phenotype.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_entrez.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_uniprot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_uniprot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_motifs.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_align.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_learning.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_pdb.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_appendix.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_searchio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_pdb.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_appendix.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cluster.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_quick_start.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_advanced.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_blast.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cluster.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_popgen.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_cookbook.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_testing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_motifs.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phylo.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_quick_start.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phenotype.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_graphics.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_align.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_searchio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_popgen.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_entrez.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_seqio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_introduction.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_kegg.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_phylo.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Doc/Tutorial/chapter_contributing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/Tutorial creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/InsdcIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/TabIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/IgIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SffIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SwissIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/UniprotIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AceIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/_convert.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SeqXmlIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/Interfaces.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/AbiIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PdbIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/QualityIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PhdIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqIO/PirIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Scanner.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Record.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/IUPAC.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/Reduced.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/TogoWS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/Record.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/File.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Superimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Polypeptide.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Chain.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Entity.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Residue.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NeighborSearch.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBExceptions.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureAlignment.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Vector.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/parse_pdb_header.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/kdtrees.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Dice.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Selection.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureBuilder.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/vectors.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmcifio.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Structure.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Atom.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/FragmentMapper.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/AbstractPropertyMap.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/HSExposure.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/ResidueDepth.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Model.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIFParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/DSSP.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/PDBIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/NACCESS.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/MMCIF2Dict.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/lowess.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/cpairwise2.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/pairwise2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/GOA.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/_cluster.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/MatrixInfo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SubsMat/FreqTable.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/triefind.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/xpktools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Seq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/Parser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SwissProt/KeyWList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/psw.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Utilities.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/DynamicProgramming.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/MarkovModel.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/Trainer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prosite.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Enzyme.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/cellosaurus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/ExPASy/Prodoc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MaxEntropy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/FileParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAOIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Consensus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_io.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/TreeConstruction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXMLIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/CDAO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_cdao_owl.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NexusIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXMLIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Newick.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Fasttree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Raxml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Phyml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/BaseTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/NewickIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_codeml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/baseml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/codeml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_yn00.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_baseml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_paml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/yn00.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/chi2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqRecord.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/LogisticRegression.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/REST.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Map copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Map copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Map copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_parser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/KGML/KGML_pathway.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Record.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/NCBIWWW.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/Applications.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/_CKDTree.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/ParserSupport.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/NCBIStandalone.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/InterproscanIO/interproscan_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/_base.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlatIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlastIO/blast_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hit.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hsp.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/_base.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/query.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer2_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/_base.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction_Dictionary.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/RanaConfig.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Restriction/PrintFormat.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/phen_micro.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/pm_fitting.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/IUPACData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/SCOPData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/CodonTable.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/bgzf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Raf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Cla.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Residues.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Dom.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Hie.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SCOP/Des.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/trie.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/MultiGraph.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/Graph.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Primer3.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/PrimerSearch.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Emboss/Applications.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/thresholds.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/alignace.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/transfac.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/_xxmotif.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/mast.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/_pwm.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/meme.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/minimal.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/motifs/matrix.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MarkovModel.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/triefind.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/DisplayRepresentation.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Distribution.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Diagram.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Graph.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Colors.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_GraphSet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Feature.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Track.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CrossLink.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_FeatureSet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/BasicChromosome.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Comparative.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/KGML_vis.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/ColorSpiral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/NaiveBayes.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonseq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalphabet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/codonalignment.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/codonalign/chisq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/CelFile.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MauveIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/ClustalIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/StockholmIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/PhylipIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/NexusIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/Interfaces.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/EmbossIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/AlignIO/MafIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqFeature.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/FSSPTools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/fssp_rec.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_utils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/AlignInfo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_TCoffee.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_MSAProbs.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_ClustalOmega.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Dialign.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Probcons.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Muscle.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Clustalw.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Prank.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Mafft.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Align/_aligners.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsageIndices.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/IsoelectricPoint.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParam.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/ProtParamData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/lcc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CodonUsage.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/MeltingTemp.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/SeqUtils/CheckSum.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nexus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Trees.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/cnexus.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nodes.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Nexus/StandardData.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/kNN.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Phd.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Ace.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_bwa.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_samtools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/Applications/_Novoalign.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/mcoffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/plugins creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/plugins/linux creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/methods creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.t_coffee/cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.config/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache/matplotlib copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/home/.cache/matplotlib/fontList.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/home/.cache/matplotlib/tex.cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_convert.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_EmbossIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Crystal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00107.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00165.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00546.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00488.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00432.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Prosite/ps00159.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_FragmentMapper.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsGeneral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_NeXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/dbsource_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.ffn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/negative_location.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.tsv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/KF527485.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/cor6_6.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/protein_refseq2.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/one_of.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/pBAD30.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/cor6_6.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_000932.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/empty_accession.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/HM138502_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_origin_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/noref.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NP_416719.gbwithparts -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NT_019265.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/EU851978_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/blank_seq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/protein_refseq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_000932.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/KF527485_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/HM138502.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/invalid_misc_feature.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/DS830848.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/pri1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/no_end_marker.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/iro.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/arab1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/invalid_product.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/EU851978.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/origin_line.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/gbvrl1_start.seq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_000932.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/1MRR_A.gp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/empty_version.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/no_origin_no_end.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/bad_loc_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/extra_keywords.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/NC_005816.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_align.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Emboss.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Chi2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Compass/comtest1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Compass/comtest2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_RCSBFormats.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise_aligner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeuralNetwork/enolase.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeuralNetwork/repeat.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CAPS.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_internet.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Prank_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TreeConstruction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_short_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_tab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example_dos.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_no_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/zero_length.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_double_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_del.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_space.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example_dos.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_null.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fastq.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_long_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_spaces.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_double_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_vtab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/tricky.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_93.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_tabs.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_diff_ids.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_in_title.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_qual_escape.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/longreads_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/illumina_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/sanger_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Quality/example.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/biosql.ini.appveyor -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/run_tests.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Location.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_internet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/clustalw.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/DMB_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/DMA_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/Cw_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NBRF/B_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Consensus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Registry/EDD_RAT.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Registry/bt001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Registry/seqs.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM700.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_series.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_dual.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_family.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_platform.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM804.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM691.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSM645.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/GSE16.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_affy.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_lowess.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Stockholm/funny.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Stockholm/simple.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_networkx.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_trie.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/3JQH.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2XHE.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/ions.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4Q9R_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.rsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/alignment_file.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/Miller_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1SSU_mod.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4ZHL.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG_noheader.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/Sander_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1LCD.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/a_structure.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4CUP.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2XHE.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4ZHL.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/lib_10_z_5.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2OFG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/4CUP.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/a_structure.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.asa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1AS5.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1SSU_mod.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1MOM_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1A8O.xyzr -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/1LCD.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/2BEG.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/occupancy.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PDB/Wilke_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SubsMat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_features.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_KDTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SwissProt.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Nexus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SwissProt.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_text_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_GFF2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_SearchIO_legacy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_property_manager -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_PDB -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_GenBank -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_translate -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_NCBI_qblast -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_HMMCasino -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_GFF -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_File -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_SubsMat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_AlignIO_MauveIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_align -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_SeqIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Location -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_geo -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Clustalw_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_KEGG -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_FSSP -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_CodonUsage -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_ClustalOmega_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_AlignIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Fasttree_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output/test_Clustalw -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/output creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Motif/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank_unittest.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_matplotlib.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ClustalOmega_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_DSSP_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIFParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniProt/goa_yeast.gaf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Uniprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cluster/cyano.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cluster/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Seq_objs.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_vectors.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Tutorial.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output.best.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TCoffee_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmpdirprankmsavWO065 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/redAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/redAltAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/protein_count.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/protein_freq.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/aaDistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SubsMat/acc_rep_mat.pik -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_bgzf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_QCPSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Compass.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_FSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Superimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Saf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Saf/saf1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Saf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Cla.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Muscle_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_convert.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_PdbIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ExPASy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/egquery1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/nucleotide1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/efetch_schemas.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/espell.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/ncbi_mim.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/egquery2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/epost2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/epost1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/taxonomy.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed3.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/epost3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/pubmed6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/nucleotide2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/einfo4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/journals.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esearch1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/esummary8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/elink3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Entrez/protein.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Des.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Fasttree_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/paired.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/greek.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/triple_sff.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_vulgar_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMCasino.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/F2CXE6.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/Q13639.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp016 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp015 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp008 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/keywlist2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp013 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp009 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/P84001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.gff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.list -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp007 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp012 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp006 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/uni003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.rdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/P97881.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp004 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/uni002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp011 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp005 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/F2CXE6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/multi_ex.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/Q13639.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/R5HY77.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/H2CNN8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/H2CNN8.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/uni001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp010 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/keywlist.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/sp014 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SwissProt/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/search_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Wise/human_114_g02_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Wise/human_114_g01_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonUsage.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Ace.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PopGen_GenePop_nodepend.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Clustalw_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Location.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_model.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/biosql.ini.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Probcons_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/haplo2.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c2space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/haplo.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/big.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c2line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c3line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/haplo3.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/c3space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PopGen/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_psycopg2_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EMBL_unittest.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Fasttree_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Affy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/majority_ref.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/consensus_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/adam_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/strict_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/upgma.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/pars3.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/msa.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/nj.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/test.log -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/seq_tests_common.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_samtools_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype_fit.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_geo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBIXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_translate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsDistribution.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_text.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Cluster.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_cellosaurus.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Medline.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Hie.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/bcl_2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/apaf.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/made_up.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PhyloXML/distribution.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/corrupt_example1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/corrupt_example2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/global_species_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/rna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/protein_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SeqXML/dna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KeyWList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_AbiIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prodoc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Ace/seq.cap.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Ace/contig1.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Ace/consed_sample.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_geo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/valine.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/proline.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/lactate.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Enzymes/lipoprotein.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Enzymes creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/gene.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko00010.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/map01100.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/compound.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko00253.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/enzyme.4letter -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/compound.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko01100.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/ko03070.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/map03070.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/KEGG/map00950.rea -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_PhylipIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_legacy.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2230_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2208L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2012L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2221L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2202L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2216L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2014L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2202L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/wnts.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2014L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2220L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2202L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2102L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2201L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2222_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/mirna.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2226_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2010L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2215L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/wnts.xml.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2222L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/mirna.tab -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2011L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/text_2220L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Scop.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam2.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam2_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1_refresh.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/bam1_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/sam2.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1_header.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/ex1_header.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/sam1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SamBam/readme.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Polypetide.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Restriction.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Pathway.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_nographics.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Polypetide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_interproscan_xml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise_aligner.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_SeqXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Scop.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/search_tests_common.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/meta.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/meta2.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/meta9.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MetaTool/Meta8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MarkovModel.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ClustalOmega_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmpdirprankmsauiLKg6 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_ResidueDepth.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBITextParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/Plate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/SmallPlate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/SmallPlates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/Plate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/SmallPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/phenotype/BadPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_translate.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_LogisticRegression.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsDistribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_codonalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ProtParam.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MafIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBITextParser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_networkx.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqRecord.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/foki.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/taqi.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/bamii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/cac81.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/taqi.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/foki.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/crei.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/cac81.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/bamii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/pvuii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/crei.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Rebase/pvuii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_nographics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/raftest.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/testDom.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/dir.des.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Muscle_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KDTree.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/promals3d.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/hedgehog.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/temp horses.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/cw02.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Clustalw/odd_consensus.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Clustalw creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/nexml.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/tolweb.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/edgelabels.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/meta_taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/meta_types.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/sets.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/trees.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/characters.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/treebase-record.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/phenoscape.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/timetree.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/NeXML/trees-uris.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Wise.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Enzyme.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Tutorial.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsBitmaps.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenomeDiagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_kNN.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phd.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_MySQLdb_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Residues.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/cds_reverse.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/bac_find.psearch -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/alignret.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/bac_find.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/short.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/needle.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/internal_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/water2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/matcher_simple.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/water.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/cds_forward.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/matcher_pair.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/NirK.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/NirK_full.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/no_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Emboss/needle_asis.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/common_BioSQL.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KEGG_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_yn00.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NaiveBayes.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Astral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_QCPSuperimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CDAO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/CDAO/test.cdao -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CDAO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Dialign_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001802x.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001802.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001422.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/NC_001802lc.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/GFF/multi.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_ClustalIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_wise.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Medline.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_StructureAlignment.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_mysql_connector_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite1.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/requires_wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/RepBase23.02.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/A04195.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/xx_after_co.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/SC10H5.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/embl_with_0_line.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/AE017046.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/Human_contigs.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/DD231055_edited2.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/DD231055_edited.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/101ma_no_coords.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/kipo_prt_sample.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/patents.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/epo_prt_selection.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/DS830848.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/hla_3260_sample.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/TRBG361.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/location_wrap.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/AAA03323.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/EMBL/U87107.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMGeneral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Mafft_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIF2Dict.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Application.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Emboss.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Application.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_seq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_codeml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TCoffee_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/minimal_test.meme -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.rna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme_v_4_11_4.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/motifs/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_Insdc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KGML_graphics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ExPASy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_codonalign.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SVDSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqUtils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Medline/pubmed_result2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Medline/pubmed_result1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Medline/pubmed_result3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/seq_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_psw.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype_fit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/ExtendedPhylip/primates.phyx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_labels.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/labels_default.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/tRNA_chrom.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/line_graph_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/organism.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/simple_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrows.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/scatter_test_7.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/square_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigils_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map03070_colors.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/scatter_test_1.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_linear.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_circular.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigils.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/scatter_test.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/spiral_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map01100_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map03070_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/organism.eps -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/random_organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map01100_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/multi_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigils.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/line_graph.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/labels_default.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map03070_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_region_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/labels_default_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/map01100_widths.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_tab.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.xmfa.backbone -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.xmfa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.xmfa.bbcols -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Mauve/simple.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Compass.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/egfr_nucl.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro3.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/egfr_id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/drosophilla.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro1.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl4.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro5.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro4.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/pro2.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl2.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/nucl5.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/egfr_pro.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/codonalign/adh.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/codonalign creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonTable.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/humor.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/invalid.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/corrupt.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/length_coords_mismatch.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_test.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/bundle_without_target.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/cnksr3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/bug2453.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/wrong_version.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/unfinished.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_q_none.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Exonerate creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Affy/affy_v4_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Affy/affy_v3_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Raf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TogoWS.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_UniGene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PhyloXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_baseml.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_features.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/output.best.fas -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blat_psl_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/random.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/reference_dna.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/reference_dna2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/interlaced2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/horses.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/interlaced.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/hennigian.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/horses.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/sequential2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phylip/sequential.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_SeqXML.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_001.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_005.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_003.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_004.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/mirna.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_004.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_003.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_35_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_005.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_34_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_34_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/pslx_35_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Blat/psl_35_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Blat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/FSSP/1cnv.fssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniGene/Hs.2.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniGene/Eca.1.2425.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/UniGene/Mdm_partial.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EmbossPrimer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_phenotype.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_prosite1.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB_MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Uniprot.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CelFile.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_psycopg2_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EmbossPrimer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_CDAO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_align.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Astral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SCOP_Dom.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SubsMat.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd_solexa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd_454 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Phd/phd1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SVDSuperimposer.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_Insdc.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_HMMCasino.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_EMBL_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_samtools_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_write.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output003.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/loveliesbleeding.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output016.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/elderberry.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output001.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output002.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/fa01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output004.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output015.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/f003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output014.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/sweetpea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output006.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output009.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output013.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/aster.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/lavender.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/rosemary.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/f002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/aster_no_wrap.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output008.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output011.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output012.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/lupine.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/phlox.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/rose.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/wisteria.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output007.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output010.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/output005.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/centaurea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/dups.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/f001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Fasta/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsBitmaps.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ColorSpiral.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_UniGene.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDB.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenomeDiagram.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Entrez_parser.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/empty.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/310.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/3100.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/test.fsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/test_data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/no_smpl1.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/3730.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/A6_1-DB3.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Abi/fake.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_FastaIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_fasta_m10_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Crystal.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_DSSP_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/InterProScan copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/InterProScan/test_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/InterProScan copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Probcons_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Prank_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Phylo_matplotlib.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_motifs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Seq_objs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GraphicsChromosome.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Clustalw_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Cluster.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_mmtf.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CAPS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_qblast.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_TogoWS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SffIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Mafft_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/test.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/test_Nexus_input.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/bats.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/int_node_labels.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/Nexus/codonposset.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/cor6_6.db -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/BioSQL/biosqldb-pg.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PDBList.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_QualityIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SearchIO_legacy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqIO_write.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Dialign_tool.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_GenBank.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/lysin.trees -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Trees/bad.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/gen_results.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/longnames.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Alignments creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/bad2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/bad3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/yn00 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/bad1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Control_files/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/versions creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/PAML/Results/bad_results.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/Results copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_FSSP.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_BLAST_tools.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_pairwise2.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignInfo.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PAML_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_Affy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_BioSQL_sqlite3_online.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/.coveragerc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_MauveIO.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_File.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_RCSBFormats.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_NCBI_qblast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_AlignIO_EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_SeqFeature.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_trie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/Tests/test_MafIO_index.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/__init__.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/Loader.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/DBUtils.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeq.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython2_2.7/build/BioSQL/BioSeqDatabase.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/ACT_example.py to ACT_example.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/swissprot.py to swissprot.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/make_subsmat.py to make_subsmat.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/www_blast.py to www_blast.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/clustal_run.py to clustal_run.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Doc/examples/getgene.py to getgene.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/_index.py to _index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/TabIO.py to TabIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/_convert.py to _convert.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/SffIO.py to SffIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/AceIO.py to AceIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/IgIO.py to IgIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/PirIO.py to PirIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/Scanner.py to Scanner.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/utils.py to utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/Record.py to Record.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/GenBank/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/LogisticRegression.py to LogisticRegression.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NaiveBayes.py to NaiveBayes.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Alphabet/Reduced.py to Reduced.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Compass/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/CAPS/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/TogoWS/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo/Record.py to Record.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Geo/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Vector.py to Vector.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Atom.py to Atom.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/PDBParser.py to PDBParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/PDBList.py to PDBList.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Entity.py to Entity.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Model.py to Model.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Chain.py to Chain.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Residue.py to Residue.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Structure.py to Structure.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/PSEA.py to PSEA.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Dice.py to Dice.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/HSExposure.py to HSExposure.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/DSSP.py to DSSP.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Selection.py to Selection.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/PDBIO.py to PDBIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/Superimposer.py to Superimposer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/NACCESS.py to NACCESS.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/vectors.py to vectors.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/mmcifio.py to mmcifio.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics/lowess.py to lowess.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Statistics/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Index.py to Index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/kNN.py to kNN.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniProt/GOA.py to GOA.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Cluster/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_py3k/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SubsMat/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/triefind.py to triefind.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR/xpktools.py to xpktools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR/NOEtools.py to NOEtools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/NMR/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Seq.py to Seq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/Parser.py to Parser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Entrez/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SwissProt/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise/psw.py to psw.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise/dnal.py to dnal.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Wise/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM/Trainer.py to Trainer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM/Utilities.py to Utilities.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prosite.py to Prosite.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/PopGen/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXML.py to NeXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAO.py to CDAO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Newick.py to Newick.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/_io.py to _io.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/_utils.py to _utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/Consensus.py to Consensus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.pyc byte-compiling 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/build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/Map/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KEGG/REST.py to REST.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/Applications.py to Applications.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/Record.py to Record.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/KDTree/KDTree.py to KDTree.pyc byte-compiling 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__init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model/_base.py to _base.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_model/hit.py to hit.pyc byte-compiling 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/build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SearchIO/_utils.py to _utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction/Restriction.py to Restriction.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction/RanaConfig.py to RanaConfig.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Restriction/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/phenotype/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/SCOPData.py to SCOPData.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/CodonTable.py to CodonTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/IUPACData.py to IUPACData.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Data/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Hie.py to Hie.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Raf.py to Raf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Des.py to Des.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Residues.py to Residues.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Dom.py to Dom.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/Cla.py to Cla.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SCOP/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Pathway/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/Primer3.py to Primer3.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/Applications.py to Applications.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Emboss/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/MaxEntropy.py to MaxEntropy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqFeature.py to SeqFeature.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/thresholds.py to thresholds.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/transfac.py to transfac.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar/db.py to db.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/applications/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/mast.py to mast.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/matrix.py to matrix.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/alignace.py to alignace.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/meme.py to meme.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/motifs/minimal.py to minimal.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Application/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Medline/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/Comparative.py to Comparative.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Graphics/Distribution.py to Distribution.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/codonseq.py to codonseq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/codonalphabet.py to codonalphabet.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/chisq.py to chisq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/codonalign/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Affy/CelFile.py to CelFile.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/MafIO.py to MafIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/AlignIO/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/FSSP/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/UniGene/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/File.py to File.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Align/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqRecord.py to SeqRecord.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/MarkovModel.py to MarkovModel.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/_utils.py to _utils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/lcc.py to lcc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus/StandardData.py to StandardData.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus/Nexus.py to Nexus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus/Trees.py to Trees.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Nexus/Nodes.py to Nodes.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Crystal/__init__.py to __init__.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Ace.py to Ace.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Phd.py to Phd.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.pyc byte-compiling 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/build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Emboss.py to test_Emboss.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CelFile.py to test_CelFile.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KeyWList.py to test_KeyWList.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/run_tests.py to run_tests.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/requires_internet.py to requires_internet.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SubsMat.py to test_SubsMat.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SwissProt.py to test_SwissProt.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_mmtf_online.py to test_mmtf_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ProtParam.py to test_ProtParam.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Uniprot.py to test_Uniprot.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SffIO.py to test_SffIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_FSSP.py to test_FSSP.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phd.py to test_Phd.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Ace.py to test_Ace.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_pairwise2.py to test_pairwise2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/search_tests_common.py to search_tests_common.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Location.py to test_Location.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO.py to test_AlignIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Nexus.py to test_Nexus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_geo.py to test_geo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_translate.py to test_translate.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/common_BioSQL.py to common_BioSQL.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB.py to test_PDB.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Medline.py to test_Medline.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_ResidueDepth.py to test_PDB_ResidueDepth.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KEGG.py to test_KEGG.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Restriction.py to test_Restriction.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Pathway.py to test_Pathway.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_seq.py to test_seq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_File.py to test_File.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_codonalign.py to test_codonalign.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_mmtf.py to test_mmtf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GenBank_unittest.py to test_GenBank_unittest.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_motifs_online.py to test_motifs_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_convert.py to test_SeqIO_convert.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Tutorial.py to test_Tutorial.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GenBank.py to test_GenBank.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_prosite1.py to test_prosite1.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/requires_wise.py to requires_wise.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Application.py to test_Application.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_prosite2.py to test_prosite2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ExPASy.py to test_ExPASy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/seq_tests_common.py to seq_tests_common.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Consensus.py to test_Consensus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Compass.py to test_Compass.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_kNN.py to test_kNN.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDBList.py to test_PDBList.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_UniGene.py to test_UniGene.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_prodoc.py to test_prodoc.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Entrez.py to test_Entrez.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_phenotype.py to test_phenotype.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO.py to test_SeqIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_align.py to test_align.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Wise.py to test_Wise.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_bgzf.py to test_bgzf.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_KDTree.py to test_KDTree.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_DSSP_tool.py to test_DSSP_tool.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Enzyme.py to test_Enzyme.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_motifs.py to test_motifs.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_lowess.py to test_lowess.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Chi2.py to test_Chi2.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Cluster.py to test_Cluster.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CAPS.py to test_CAPS.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_TogoWS.py to test_TogoWS.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CodonTable.py to test_CodonTable.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/PAML/gen_results.py to gen_results.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_CodonUsage.py to test_CodonUsage.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_psw.py to test_psw.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_Affy.py to test_Affy.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/Tests/test_trie.py to test_trie.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/DBUtils.py to DBUtils.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/Loader.py to Loader.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/BioSeq.py to BioSeq.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/BioSQL/__init__.py to __init__.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/biopython-1.73.egg-info Skipping SOURCES.txt running install_scripts pybuild --install -i python{version} -p 3.7 --dest-dir /build/python-biopython-1.73\+dfsg/debian/tmp I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-biopython-1.73+dfsg/debian/tmp running install running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ACT_example.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/opuntia.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/fasta_dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/nmr/simplepredict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/nmr/noed.xpk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/PF05371_seed.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/my_blat.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ec_5.4.2.2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/simple.dnd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/swissprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/opuntia.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/my_blast.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/fasta_iterator.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/m_cold.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/make_subsmat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/beta.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/alpha.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/www_blast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/ls_orchid.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/clustal_run.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/examples/getgene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_contributing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_graphics.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_testing.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_learning.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seqio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_blast.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_introduction.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cookbook.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_advanced.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_kegg.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phenotype.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_entrez.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_uniprot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_uniprot.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_motifs.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_align.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_learning.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_pdb.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_appendix.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_searchio.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_pdb.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_appendix.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cluster.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_quick_start.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_advanced.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_blast.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cluster.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_popgen.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_cookbook.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_testing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_motifs.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phylo.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_quick_start.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phenotype.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_graphics.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_align.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_searchio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_popgen.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_entrez.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_seqio.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_introduction.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_kegg.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_phylo.tex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Doc/Tutorial/chapter_contributing.aux -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/Tutorial creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/PdbIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/QualityIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/Interfaces.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/PhdIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/SffIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/_convert.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/TabIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/PirIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/IgIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/AceIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/SwissIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__pycache__/AbiIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/Scanner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/Record.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/Scanner.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__pycache__/utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/GenBank/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/IUPAC.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__pycache__/IUPAC.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__pycache__/Reduced.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Alphabet/Reduced.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Compass/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/CAPS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/TogoWS copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/TogoWS/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/TogoWS creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/__pycache__/Record.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Geo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Vector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Atom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/kdtrees.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Entity.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Chain.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Residue.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Entity.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/DSSP.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/HSExposure.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBExceptions.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/StructureBuilder.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Chain.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/vectors.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Model.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/mmcifio.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Structure.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/FragmentMapper.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/StructureAlignment.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Polypeptide.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/MMCIFParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Dice.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/NeighborSearch.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/NACCESS.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/ResidueDepth.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Atom.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/PDBParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Vector.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Selection.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__pycache__/Superimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Residue.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Structure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PSEA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Dice.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/HSExposure.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/DSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Selection.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/NACCESS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/mmcifio.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/__pycache__/lowess.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Statistics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/__pycache__/GOA.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniProt/GOA.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/cluster.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/cluster.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Cluster/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_py3k/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/FreqTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__pycache__/FreqTable.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/MatrixInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SubsMat/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/triefind.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/__pycache__/xpktools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/xpktools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/NOEtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/NMR/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/Parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/__pycache__/Parser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Entrez/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/__pycache__/KeyWList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SwissProt/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/__pycache__/psw.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/dnal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Wise/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/Utilities.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/MarkovModel.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__pycache__/Trainer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/Trainer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/Utilities.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/Prodoc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/Enzyme.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__pycache__/Prosite.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/GenePop/Utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/PopGen/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/MaxEntropy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/bgzf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/triefind.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/Seq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/kNN.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/SeqFeature.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/_utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/MarkovModel.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/NaiveBayes.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/File.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/SeqRecord.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/LogisticRegression.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__pycache__/pairwise2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/PhyloXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NewickIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/_io.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NexusIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/NeXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/CDAOIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/BaseTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/Consensus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/Newick.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/_utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/CDAO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Newick.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/_io.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/__pycache__/REST.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KEGG/REST.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/trie.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/NCBIWWW.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/Applications.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/NCBIXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__pycache__/Record.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/Record.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTree.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTreemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/__pycache__/KDTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/Neighbor.h -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTree.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/BlatIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__pycache__/_utils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/query.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/hit.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/_base.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SearchIO/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/RanaConfig.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/PrintFormat.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__pycache__/Restriction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/RanaConfig.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Restriction/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__pycache__/phen_micro.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__pycache__/pm_fitting.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/phenotype/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/SCOPData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/CodonTable.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/IUPACData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__pycache__/SCOPData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/IUPACData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Data/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Raf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Des.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Cla.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Hie.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Residues.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/Dom.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SCOP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/__pycache__ creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Pathway/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/Primer3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/Primer3.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__pycache__/Applications.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/Applications.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Emboss/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/MaxEntropy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/thresholds.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/transfac.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/mast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/matrix.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/alignace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/matrix.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/meme.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/thresholds.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/mast.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/transfac.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/alignace.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__pycache__/minimal.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/_pwm.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/meme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/motifs/minimal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Application/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Medline/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/Comparative.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/KGML_vis.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/Distribution.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/Comparative.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Graphics/Distribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/codonseq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/codonseq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/codonalphabet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/codonalignment.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__pycache__/chisq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/codonalphabet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/chisq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/codonalign/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/cpairwise2module.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/__pycache__/CelFile.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Affy/CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/MauveIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/NexusIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/Interfaces.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/MafIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/AlignIO/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/fssp_rec.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__pycache__/FSSPTools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__pycache__/fssp_rec.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/FSSPTools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/FSSP/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/UniGene/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/triemodule.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/__pycache__/AlignInfo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/_aligners.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Prank.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Align/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/_utils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/lcc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/Nexus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/StandardData.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/Trees.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__pycache__/Nodes.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/cnexus.c -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/StandardData.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/Trees.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Nexus/Nodes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Crystal/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__pycache__/Ace.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__pycache__/Phd.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/Sequencing/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Bio/bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/mcoffee creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/plugins creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/plugins/linux creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/methods creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.t_coffee/cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio/Entrez creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.config/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache/matplotlib copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/home/.cache/matplotlib/fontlist-v300.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/home/.cache/matplotlib/tex.cache creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Crystal.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_mysql_connector.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Entrez_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00107.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00165.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00546.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00488.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00432.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Prosite/ps00159.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Prosite copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Residues.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/dbsource_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.ffn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/negative_location.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.tsv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/KF527485.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/cor6_6.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/protein_refseq2.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/one_of.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/pBAD30.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/cor6_6.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_000932.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/empty_accession.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/HM138502_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_origin_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/noref.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NP_416719.gbwithparts -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NT_019265.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/EU851978_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/blank_seq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/protein_refseq.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_000932.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/KF527485_output.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/HM138502.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/invalid_misc_feature.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/DS830848.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/pri1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/no_end_marker.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/iro.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/arab1.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/invalid_product.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/EU851978.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/origin_line.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/gbvrl1_start.seq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_000932.gb.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/1MRR_A.gp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.faa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/empty_version.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/no_origin_no_end.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/bad_loc_wrap.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/extra_keywords.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/NC_005816.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GenBank copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_HMMGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Emboss.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Compass/comtest1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Compass/comtest2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Compass copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_pairwise_aligner.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeuralNetwork/enolase.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeuralNetwork/repeat.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Prank_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_ClustalIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CelFile.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PAML_baseml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KeyWList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_short_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_tab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example_dos.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_no_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/zero_length.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_double_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_del.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_space.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example_dos.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_null.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fastq.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_long_qual.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_spaces.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_double_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fastq.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_vtab.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/tricky.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_93.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_as_solexa.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_example.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_tabs.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_diff_ids.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_as_illumina.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_in_title.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_qual_escape.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/longreads_original_sanger.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/illumina_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/sanger_faked.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Quality/example.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/biosql.ini.appveyor -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/run_tests.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/requires_internet.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/clustalw.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/DMB_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/DMA_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/Cw_prot.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NBRF/B_nuc.pir -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NBRF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/.flake8 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Registry/EDD_RAT.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Registry/bt001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Registry/seqs.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Registry copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_exonerate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM700.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_series.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_dual.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_family.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_platform.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM804.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM691.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSM645.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/GSE16.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_affy.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Geo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Hie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Cla.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Stockholm/funny.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Stockholm/simple.sth -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Stockholm copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/3JQH.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2XHE.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/ions.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4Q9R_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.rsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/alignment_file.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/Miller_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1SSU_mod.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4ZHL.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG_noheader.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/Sander_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1LCD.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/a_structure.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4CUP.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2XHE.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4ZHL.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/lib_10_z_5.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2OFG.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/4CUP.mmtf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/a_structure.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.asa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1AS5.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1SSU_mod.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1MOM_min.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1A8O.xyzr -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/1LCD.cif -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/2BEG.dssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/occupancy.pdb -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PDB/Wilke_RASA.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PDB copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SubsMat.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_xml_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqFeature.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SwissProt.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_mmtf_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_GFF2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_SearchIO_legacy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_property_manager -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_PDB -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_GenBank -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_translate -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_NCBI_qblast -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_HMMCasino -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_GFF -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_File -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_SubsMat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_AlignIO_MauveIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_align -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_SeqIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Location -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_geo -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Clustalw_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_KEGG -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_FSSP -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_CodonUsage -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_ClustalOmega_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_AlignIO -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Fasttree_tool -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output/test_Clustalw -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/output creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Motif/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Motif copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_matplotlib.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ClustalOmega_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ProtParam.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniProt/goa_yeast.gaf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Uniprot.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cluster/cyano.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cluster copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cluster/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cluster creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmpdirprankmsaQ49mzw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_PhylipIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output.best.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_vectors.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SffIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/redAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/redAltAADistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/protein_count.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/protein_freq.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/aaDistrib.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SubsMat/acc_rep_mat.pik -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SubsMat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_QCPSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_FSSP.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_MarkovModel.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blat_psl.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phd.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Saf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Saf/saf1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Saf copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqRecord.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/common_BioSQL_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Muscle_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_CDAO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/egquery1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/nucleotide1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/efetch_schemas.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/espell.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/ncbi_mim.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/egquery2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/epost2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/epost1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/taxonomy.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed3.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/epost3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary7.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/pubmed6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink5.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/nucleotide2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/einfo4.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/journals.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esearch1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/esummary8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/elink3.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Entrez/protein.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Entrez copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Ace.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmpdirprankmsacwpXAz copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_StructureAlignment.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/paired.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/greek.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/triple_sff.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Roche copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_pairwise2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NaiveBayes.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_HMMCasino.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/F2CXE6.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/Q13639.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp016 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp015 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp008 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/keywlist2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp013 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp009 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/P84001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.gff -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.list -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp007 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp012 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp006 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/uni003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.rdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/P97881.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp004 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/uni002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp011 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp005 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/F2CXE6.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/multi_ex.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/Q13639.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/R5HY77.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/H2CNN8.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/H2CNN8.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/uni001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp010 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/keywlist.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/sp014 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SwissProt/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SwissProt copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/search_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Wise/human_114_g02_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Wise/human_114_g01_exons.fna_01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Wise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Clustalw_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_TreeConstruction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Location.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/biosql.ini.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Probcons_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/haplo2.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c2space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/haplo.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/big.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c2line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c3line.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/haplo3.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/c3space.gen -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PopGen/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PopGen copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Nexus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_psycopg2_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Fasttree_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/majority_ref.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/consensus_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/adam_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/strict_refs.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/upgma.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/pars3.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/msa.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/nj.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/test.log -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_align.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_vectors.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_NeXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PAML_codeml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Tutorial.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KGML_nographics.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Scop.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_seq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqFeature.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_HMMCasino.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_translate.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Clustalw_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_QCPSuperimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Prank_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_LogisticRegression.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_samtools_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_prosite1.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Consensus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_features.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_psw.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_MarkovModel.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Uniprot.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Seq_objs.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBIXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsChromosome.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GenBank.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Des.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PhyloXML.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Mafft_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_phenotype_fit.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_pairwise_aligner.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_UniGene.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsDistribution.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_model.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SffIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KGML_graphics_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_RCSBFormats.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Dom.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ExPASy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_phenotype.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Fasttree_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/requires_internet.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_prodoc.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KEGG.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Cluster.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_motifs_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Residues.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SVDSuperimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GenomeDiagram.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_Polypetide.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Compass.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PAML_yn00.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqUtils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Affy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Raf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_mmtf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_trie.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PAML_baseml.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Wise.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_TogoWS.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_motifs.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_TreeConstruction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsGeneral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_MafIO_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_pairwise2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/common_BioSQL_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_DSSP_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Muscle_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Dialign_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Restriction.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_geo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Ace.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CelFile.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_prosite2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_CDAO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phd.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Entrez.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KEGG_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/search_tests_common.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Chi2.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Enzyme.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_convert.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ProtParam.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ColorSpiral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_kNN.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDBList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Cla.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqRecord.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_write.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Probcons_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Emboss.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_lowess.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_File.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/requires_wise.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_EMBL_unittest.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/seq_tests_common.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Pathway.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Phylo_networkx.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Entrez_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_write.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SwissProt.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_HMMGeneral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_mmtf_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_online.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Entrez_parser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Application.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Medline.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_ResidueDepth.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/common_BioSQL.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_GenBank_unittest.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CAPS.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SubsMat.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Nexus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NaiveBayes.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_convert.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CodonUsage.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_bgzf.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_TCoffee_tool.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_EmbossPrimer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_CodonTable.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Location.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_legacy.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KeyWList.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBITextParser.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KGML_graphics.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Hie.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_FSSP.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_AlignInfo.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_cellosaurus.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_NCBI_qblast.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_Superimposer.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_PDB_KDTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_SCOP_Astral.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_Crystal.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_codonalign.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/__pycache__/test_KDTree.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_samtools_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_geo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_translate.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBIXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/common_BioSQL.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BWA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Medline.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/bcl_2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/apaf.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/made_up.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PhyloXML/distribution.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_ResidueDepth.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KEGG.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/corrupt_example1.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/corrupt_example2.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/global_species_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/rna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/protein_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SeqXML/dna_example.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SeqXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KGML_graphics_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Ace/seq.cap.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Ace/contig1.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Ace/consed_sample.ace -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Ace copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Restriction.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PAML_codeml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/valine.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/proline.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/lactate.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Enzymes/lipoprotein.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Enzymes creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/gene.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko00010.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/map01100.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/compound.sample -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko00253.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/enzyme.4letter -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/compound.irregular -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko01100.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/ko03070.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/map03070.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/KEGG/map00950.rea -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/KEGG copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Pathway.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2230_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2208L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2012L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2221L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2202L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2216L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_006.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2014L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2202L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_004.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/wnts.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2014L_psiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2220L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2202L_blastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2102L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2201L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_005.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_phiblast_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastp_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_tblastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2222_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/mirna.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastp_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2226_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_phiblast_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastn_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastp_007.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2010L_phiblast_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2215L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/wnts.xml.bgz -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2222L_blastx_001.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/mirna.tab -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2011L_blastn_003.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/text_2220L_blastx_002.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blast copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Scop.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam2.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam1.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam2_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1_refresh.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/bam1_sorted.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/sam2.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1_header.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/ex1_header.bam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/sam1.sam -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SamBam/readme.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SamBam copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_seq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_File.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_Polypetide.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Raf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_SeqXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_write.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/meta.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/meta2.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/meta9.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MetaTool/Meta8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MetaTool copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_MMCIFParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBITextParser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/Plates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/Plate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/SmallPlate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/SmallPlates.csv -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/Plate_2.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/SmallPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/phenotype/BadPlate.json -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/phenotype copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsDistribution.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_codonalign.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_MafIO_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_mmtf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_Superimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_networkx.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsGeneral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/foki.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/taqi.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/bamii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/cac81.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/taqi.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/foki.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/crei.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/cac81.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/bamii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/pvuii.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/crei.htm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Rebase/pvuii.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Rebase copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KGML_nographics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/raftest.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/testDom.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/dir.des.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/SCOP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GenBank_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/promals3d.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/protein.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/hedgehog.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/temp horses.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/cw02.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/opuntia.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Clustalw/odd_consensus.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Clustalw creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/nexml.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/tolweb.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/edgelabels.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/meta_taxa.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/meta_types.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/sets.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/trees.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/characters.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/treebase-record.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/phenoscape.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/timetree.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/NeXML/trees-uris.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/NeXML copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_FragmentMapper.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_motifs_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Tutorial.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GenomeDiagram.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Phylo_NeXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GenBank.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Entrez_parser.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/cds_reverse.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/bac_find.psearch -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/alignret.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/bac_find.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/short.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/needle.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/internal_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/water2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/matcher_simple.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/water.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/cds_forward.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/matcher_pair.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/NirK.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/NirK_full.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/no_oligo.primer3 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Emboss/needle_asis.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Emboss copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_MauveIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KEGG_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CDAO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/CDAO/test.cdao -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CDAO copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_QualityIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Dialign_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001802x.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001802.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001422.gbk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/NC_001802lc.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/GFF/multi.fna -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/GFF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsChromosome.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_prosite1.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/requires_wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/RepBase23.02.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/A04195.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/xx_after_co.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/SC10H5.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/embl_with_0_line.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/AE017046.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/Human_contigs.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/DD231055_edited2.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/DD231055_edited.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/101ma_no_coords.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/kipo_prt_sample.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/patents.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/epo_prt_selection.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/DS830848.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/hla_3260_sample.imgt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/TRBG361.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/location_wrap.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/AAA03323.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/EMBL/U87107.embl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/EMBL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_convert.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Mafft_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Dom.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Application.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_prosite2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_TCoffee_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/mast.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/mast.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.protein.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/minimal_test.meme -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.rna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/Arnt.sites -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/alignace.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/REB1.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/transfac.dat -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme_v_4_11_4.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/mast.protein.tcm.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/SRF.pfm -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/motifs/meme.dna.oops.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/motifs copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_Insdc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignInfo.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KGML_graphics.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ExPASy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_abs_rel.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_rel_abs.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/tmp_MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/tmp_MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Des.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SVDSuperimposer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Medline/pubmed_result2.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Medline/pubmed_result1.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Medline/pubmed_result3.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Medline copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/seq_tests_common.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_phenotype_fit.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/ExtendedPhylip/primates.phyx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_sqlite3.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_labels.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/labels_default.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/tRNA_chrom.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/line_graph_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/organism.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/simple_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrows.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/scatter_test_7.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/square_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigils_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map03070_colors.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/scatter_test_1.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_linear.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_circular.svg -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigils.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/scatter_test.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/spiral_test.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map01100_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map03070_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/organism.eps -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/random_organism.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map01100_original.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/multi_bar.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigils.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/line_graph.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/labels_default.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map03070_transparency.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_region_circular.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/labels_default_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/map01100_widths.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Graphics creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_BioSQL_sqlite3_online.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.xmfa.backbone -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.xmfa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.xmfa.bbcols -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Mauve/simple.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Mauve copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Consensus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Compass.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/egfr_nucl.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro3.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/egfr_id -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/drosophilla.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro1.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl4.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro5.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro4.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl1.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/pro2.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl2.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/nucl5.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/egfr_pro.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/codonalign/adh.aln -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/codonalign creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_kNN.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDBList.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_interproscan_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/humor.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/invalid.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/corrupt.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/length_coords_mismatch.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_test.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/bundle_without_target.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/cnksr3.fa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/bug2453.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/wrong_version.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/unfinished.idx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/MAF copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_AbiIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_q_none.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Exonerate creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Affy/affy_v4_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Affy copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Affy/affy_v3_example.CEL -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Affy creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Hmmer copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_UniGene.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_PdbIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_features.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/output.best.fas -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_prodoc.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blat_psl_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/random.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/reference_dna.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/reference_dna2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/interlaced2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/horses.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/interlaced.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/hennigian.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/horses.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/sequential2.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phylip/sequential.phy -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phylip creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_001.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_005.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_003.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_004.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/mirna.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_004.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_003.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_35_001.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_005.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_34_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_34_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/pslx_35_002.pslx -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Blat/psl_35_002.psl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Blat creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/FSSP copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/FSSP/1cnv.fssp -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/FSSP creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniGene/Hs.2.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniGene/Eca.1.2425.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/UniGene/Mdm_partial.data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/UniGene copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_EmbossPrimer.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_cellosaurus.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Entrez.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_phenotype.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PDB_MMCIF2Dict.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer2_text.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_align.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SCOP_Astral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd2 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd_solexa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd_454 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Phd/phd1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Phd copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Wise.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SeqIO_FastaIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_bgzf.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_KDTree.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_EMBL_unittest.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output003.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/loveliesbleeding.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output016.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/elderberry.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output001.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output002.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/fa01 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output004.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output015.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/f003 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output014.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/sweetpea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output006.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output009.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output013.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/aster.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/lavender.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/rosemary.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/f002 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/aster_no_wrap.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output008.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output011.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output012.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/lupine.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/phlox.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/rose.pro -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/wisteria.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output007.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output010.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/output005.m10 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/centaurea.nu -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/dups.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/f001 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Fasta/README -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Fasta copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_GraphicsBitmaps.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_ColorSpiral.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_fasta_m10.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/empty.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/310.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/3100.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/test.fsa -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/test_data -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/no_smpl1.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/3730.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/A6_1-DB3.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Abi/fake.ab1 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Abi copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_tab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_model.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_blast_xml.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_DSSP_tool.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Enzyme.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/InterProScan copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/InterProScan/test_001.xml -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/InterProScan copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_BLAST_tools.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_motifs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Seq_objs.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_lowess.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Chi2.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Cluster.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CAPS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_TogoWS.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CodonTable.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_LogisticRegression.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/test.new -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/test_Nexus_input.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/bats.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/int_node_labels.nwk -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/Nexus/codonposset.nex -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/Nexus creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/cor6_6.db -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/BioSQL/biosqldb-pg.sql -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_SearchIO_legacy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/lysin.trees -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Trees/bad.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/gen_results.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/longnames.fasta -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Alignments creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/bad2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/species.tree -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/README.txt -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/bad3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/yn00 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/bad1.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Control_files/baseml.ctl -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/yn00 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/SE creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/versions creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/PAML/Results/bad_results.out -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/Results copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PAML_yn00.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_CodonUsage.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_psw.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_Affy.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/.coveragerc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_RCSBFormats.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_NCBI_qblast.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_PhyloXML.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_AlignIO_EmbossIO.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/Tests/test_trie.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/DBUtils.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL creating /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/__init__.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/DBUtils.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/BioSeq.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/BioSeqDatabase.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__pycache__/Loader.cpython-37.pyc -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/Loader.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/BioSeq.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL copying /build/python-biopython-1.73+dfsg/.pybuild/cpython3_3.7/build/BioSQL/__init__.py -> /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/make_subsmat.py to make_subsmat.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Doc/examples/getgene.py to getgene.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/_index.py to _index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/_convert.py to _convert.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/utils.py to utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/Record.py to Record.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Alphabet/Reduced.py to Reduced.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Compass/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/Record.py to Record.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Geo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Vector.py to Vector.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Atom.py to Atom.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Entity.py to Entity.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Model.py to Model.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Chain.py to Chain.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Residue.py to Residue.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Structure.py to Structure.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Dice.py to Dice.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Selection.py to Selection.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/vectors.py to vectors.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/lowess.py to lowess.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Statistics/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Index.py to Index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/kNN.py to kNN.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_py3k/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/triefind.py to triefind.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/NMR/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Seq.py to Seq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/psw.py to psw.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/dnal.py to dnal.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Wise/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/_io.py to _io.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KEGG/REST.py to REST.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/Applications.py to Applications.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/Record.py to Record.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/KDTree.py to KDTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/KDTree/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_index.py to _index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/RanaConfig.py to RanaConfig.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Data/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Des.py to Des.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/transfac.py to transfac.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/mast.py to mast.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/matrix.py to matrix.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/alignace.py to alignace.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/meme.py to meme.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/motifs/minimal.py to minimal.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Application/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Medline/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/codonalphabet.py to codonalphabet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/FSSP/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/File.py to File.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Align/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/_utils.py to _utils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Crystal/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/pairwise2.py to pairwise2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Bio/bgzf.py to bgzf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Crystal.py to test_Crystal.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CelFile.py to test_CelFile.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/run_tests.py to run_tests.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/requires_internet.py to requires_internet.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_mmtf_online.py to test_mmtf_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_FSSP.py to test_FSSP.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phd.py to test_Phd.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Ace.py to test_Ace.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Location.py to test_Location.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_geo.py to test_geo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_translate.py to test_translate.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB.py to test_PDB.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Medline.py to test_Medline.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_ResidueDepth.py to test_PDB_ResidueDepth.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_seq.py to test_seq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_File.py to test_File.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_mmtf.py to test_mmtf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GenBank_unittest.py to test_GenBank_unittest.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_convert.py to test_SeqIO_convert.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_prosite1.py to test_prosite1.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/requires_wise.py to requires_wise.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Application.py to test_Application.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_prosite2.py to test_prosite2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Compass.py to test_Compass.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_kNN.py to test_kNN.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_align.py to test_align.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Wise.py to test_Wise.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_KDTree.py to test_KDTree.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_DSSP_tool.py to test_DSSP_tool.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_motifs.py to test_motifs.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_lowess.py to test_lowess.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_CodonUsage.py to test_CodonUsage.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_psw.py to test_psw.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_Affy.py to test_Affy.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/Tests/test_trie.py to test_trie.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/Loader.py to Loader.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-37.pyc byte-compiling /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/BioSQL/__init__.py to __init__.cpython-37.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-1.73+dfsg/debian/tmp/usr/lib/python3.7/dist-packages/biopython-1.73.egg-info Skipping SOURCES.txt running install_scripts dh_numpy -ppython-biopython (grep -a -s -v python:Depends debian/python-biopython.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9") > debian/python-biopython.substvars.new mv debian/python-biopython.substvars.new debian/python-biopython.substvars dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_install -O--buildsystem=pybuild install -d debian/python-biopython//usr/lib/python2.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python2.7/dist-packages/Bio debian/tmp/usr/lib/python2.7/dist-packages/biopython-1.73.egg-info debian/python-biopython//usr/lib/python2.7/dist-packages/ install -d debian/.debhelper/generated/python-biopython install -d debian/python3-biopython//usr/lib/python3.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.7/dist-packages/Bio debian/tmp/usr/lib/python3.7/dist-packages/biopython-1.73.egg-info debian/python3-biopython//usr/lib/python3.7/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/python-biopython-sql//usr/lib/python2.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python2.7/dist-packages/BioSQL debian/python-biopython-sql//usr/lib/python2.7/dist-packages/ install -d debian/.debhelper/generated/python-biopython-sql install -d debian/python3-biopython-sql//usr/lib/python3.7/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.7/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.7/dist-packages/ install -d debian/.debhelper/generated/python3-biopython-sql rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python-biopython.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_installdocs -i install -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc install -d debian/python-biopython-doc/usr/share/doc/python-biopython cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython chown -R 0:0 debian/python-biopython-doc/usr/share/doc chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright install -d debian/python-biopython-doc/usr/share/doc-base/ install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/biopython-tutorial install -d debian/python-biopython-sql/usr/share/doc/python-biopython-sql install -p -m0644 debian/copyright debian/python-biopython-sql/usr/share/doc/python-biopython-sql/copyright install -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright find debian -name __pycache__ -type d | xargs rm -rf find debian -name example.fastq.gz debian/tmp/usr/lib/python3.7/dist-packages/Tests/Quality/example.fastq.gz debian/tmp/usr/lib/python2.7/dist-packages/Tests/Quality/example.fastq.gz # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well cp -a debian/tmp_tests/* /build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/ find debian -name .cvsignore -delete # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \ mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \ fi cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean make[2]: Entering directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' make -C install make[3]: Entering directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' ( for f in install ; do make clean -C $f ; done ) make[3]: Entering directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' rm -f Installation.aux rm -f Installation.log rm -f Installation.out rm -f Installation.toc rm -f Installation.haux rm -f Installation.htoc make[3]: Leaving directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/install' rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux make[2]: Leaving directory '/build/python-biopython-1.73+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython-biopython-sql -Npython3-biopython-sql install -d debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python-biopython/usr/share/doc/python-biopython cp --reflink=auto -a ./NEWS.rst debian/python-biopython/usr/share/doc/python-biopython chown -R 0:0 debian/python-biopython/usr/share/doc chmod -R u\+rw,go=rX debian/python-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python-biopython/usr/share/doc/python-biopython/README.Debian install -p -m0644 debian/copyright debian/python-biopython/usr/share/doc/python-biopython/copyright install -d debian/python3-biopython/usr/share/doc/python3-biopython install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python-biopython/usr/share/doc/python-biopython/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython-sql/usr/share/doc/python-biopython-sql/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian install -p -m0644 debian/changelog debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian dh_python2 -O--buildsystem=pybuild D: dh_python2 dh_python2:393: version: 3.20190308 D: dh_python2 dh_python2:394: argv: ['/usr/share/dh-python/dh_python2', '-O--buildsystem=pybuild'] D: dh_python2 dh_python2:395: options: {'guess_versions': True, 'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'namespaces': None, 'clean_pycentral': False, 'shebang': None, 'ignore_shebangs': False, 'ignore_namespace': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python2 dh_python2:396: args: [] D: dh_python2 dh_python2:398: supported Python versions: 2.7 (default=2.7) D: dh_python2 debhelper:107: skipping package: python3-biopython D: dh_python2 debhelper:107: skipping package: python3-biopython-sql D: dh_python2 debhelper:153: source=python-biopython, binary packages=['python-biopython', 'python-biopython-doc', 'python-biopython-sql'] D: dh_python2 dh_python2:415: processing package python-biopython... D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/File.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Index.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/LogisticRegression.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/MarkovModel.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/MaxEntropy.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/NaiveBayes.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Seq.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqFeature.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqRecord.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/_utils.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/bgzf.pyc D: dh_python2 tools:232: invoking: /usr/bin/python2.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python2 fs:343: renaming cpairwise2.so to cpairwise2.i386-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/kNN.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/pairwise2.pyc I: dh_python2 fs:343: renaming trie.so to trie.i386-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/triefind.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/AbiIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/AceIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/FastaIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/IgIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/InsdcIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/Interfaces.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/PdbIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/PhdIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/PirIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/QualityIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/SeqXmlIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/SffIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/SwissIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/TabIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/UniprotIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/_convert.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqIO/_index.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/GenBank/Record.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/GenBank/Scanner.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/GenBank/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/GenBank/utils.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Alphabet/IUPAC.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Alphabet/Reduced.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Alphabet/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Compass/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/CAPS/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/TogoWS/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Geo/Record.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Geo/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/AbstractPropertyMap.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Atom.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Chain.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/DSSP.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Dice.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Entity.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/FragmentMapper.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/HSExposure.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/MMCIF2Dict.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/MMCIFParser.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Model.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/NACCESS.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/NeighborSearch.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/PDBExceptions.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/PDBIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/PDBList.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/PDBParser.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/PSEA.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Polypeptide.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Residue.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/ResidueDepth.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Selection.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Structure.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/StructureAlignment.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/StructureBuilder.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Superimposer.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/Vector.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/__init__.pyc I: dh_python2 fs:343: renaming kdtrees.so to kdtrees.i386-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/mmcifio.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/parse_pdb_header.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/vectors.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf/DefaultParser.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/mmtf/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/__init__.pyc I: dh_python2 fs:343: renaming qcprotmodule.so to qcprot.i386-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Statistics/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Statistics/lowess.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/UniProt/GOA.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/UniProt/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/__init__.pyc I: dh_python2 fs:343: renaming _cluster.so to _cluster.i386-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/_py3k/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SubsMat/FreqTable.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SubsMat/MatrixInfo.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SubsMat/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/NMR/NOEtools.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/NMR/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/NMR/xpktools.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/Parser.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SwissProt/KeyWList.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SwissProt/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Wise/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Wise/dnal.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Wise/psw.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/HMM/DynamicProgramming.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/HMM/MarkovModel.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/HMM/Trainer.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/HMM/Utilities.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/HMM/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/Enzyme.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prodoc.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/Prosite.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/ScanProsite.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/ExPASy/cellosaurus.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PopGen/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/Controller.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/EasyController.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/FileParser.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/LargeFileParser.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/Utils.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PopGen/GenePop/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/BaseTree.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/CDAOIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Consensus.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXML.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/NeXMLIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/Newick.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Phylo/NewickIO.pyc D: dh_python2 fs:209: removing unwanted: 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D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/_base.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Restriction/PrintFormat.pyc D: dh_python2 fs:209: removing unwanted: 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debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/FastaIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/Interfaces.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/MafIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/MauveIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/NexusIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/PhylipIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/StockholmIO.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/AlignIO/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/FSSP/FSSPTools.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/FSSP/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/FSSP/fssp_rec.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/UniGene/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/AlignInfo.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/__init__.pyc I: dh_python2 fs:343: renaming _aligners.so to _aligners.i386-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_ClustalOmega.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Clustalw.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Dialign.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_MSAProbs.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Mafft.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Muscle.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Prank.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_Probcons.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/_TCoffee.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/Applications/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CheckSum.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsage.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/CodonUsageIndices.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/IsoelectricPoint.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/MeltingTemp.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParam.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/ProtParamData.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/SeqUtils/lcc.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/Nexus.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/Nodes.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/StandardData.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/Trees.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/__init__.pyc I: dh_python2 fs:343: renaming cnexus.so to cnexus.i386-linux-gnu.so D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Crystal/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Ace.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Phd.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_Novoalign.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/__init__.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_bwa.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Sequencing/Applications/_samtools.pyc D: dh_python2 fs:260: package python-biopython details = {'requires.txt': {'debian/python-biopython/usr/lib/python2.7/dist-packages/biopython-1.73.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('2.7')}, 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biopython D: dh_python2 pydist:138: trying to find dependency for numpy (python=2.7) D: dh_python2 depends:272: D={'python:any', 'python (>= 2.7~)', 'python (<< 2.8)', 'python:any (<< 2.8)', 'python:any (>= 2.7~)', 'python-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python2 dh_python2:415: processing package python-biopython-doc... D: dh_python2 fs:260: package python-biopython-doc details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biopython-doc D: dh_python2 depends:272: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python2 dh_python2:415: processing package python-biopython-sql... D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/BioSeq.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/BioSeqDatabase.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/DBUtils.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/Loader.pyc D: dh_python2 fs:209: removing unwanted: debian/python-biopython-sql/usr/lib/python2.7/dist-packages/BioSQL/__init__.pyc D: dh_python2 fs:260: package python-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-biopython-sql D: dh_python2 depends:272: D={'python:any', 'python:any (<< 2.8)', 'python:any (>= 2.7~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 3.20190308 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7) D: dh_python3 debhelper:107: skipping package: python-biopython D: dh_python3 debhelper:107: skipping package: python-biopython-doc D: dh_python3 debhelper:107: skipping package: python-biopython-sql D: dh_python3 debhelper:153: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.7/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' D: dh_python3 fs:260: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.73.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-biopython D: dh_python3 pydist:138: trying to find dependency for numpy (python=None) D: dh_python3 depends:272: D={'python3-numpy', 'python3 (>= 3.7~)', 'python3:any', 'python3 (<< 3.8)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package python3-biopython-sql... D: dh_python3 fs:49: moving files from debian/python3-biopython-sql/usr/lib/python3.7/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-biopython-sql D: dh_python3 depends:272: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/python-biopython-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/mathml2.dtd rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -O--buildsystem=pybuild Using 1547245432 as canonical time Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python-biopython cd debian/python3-biopython cd debian/python-biopython-doc cd debian/python-biopython-sql cd debian/python3-biopython-sql chmod a-x usr/share/doc/python3-biopython/changelog.Debian chmod a-x usr/share/doc/python3-biopython-sql/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/changelog.Debian chmod a-x usr/share/doc/python-biopython-sql/changelog.Debian chmod a-x usr/share/doc/python-biopython/CONTRIB.rst usr/share/doc/python-biopython/CONTRIBUTING.rst usr/share/doc/python-biopython/DEPRECATED.rst usr/share/doc/python-biopython/NEWS.rst usr/share/doc/python-biopython/changelog.Debian gzip -9nf usr/share/doc/python-biopython-sql/changelog.Debian cd '/build/python-biopython-1.73+dfsg' cd '/build/python-biopython-1.73+dfsg' gzip -9nf usr/share/doc/python-biopython/CONTRIB.rst usr/share/doc/python-biopython/CONTRIBUTING.rst usr/share/doc/python-biopython/DEPRECATED.rst usr/share/doc/python-biopython/NEWS.rst usr/share/doc/python-biopython/changelog.Debian cd '/build/python-biopython-1.73+dfsg' cd '/build/python-biopython-1.73+dfsg' chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_learning.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex 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usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDB.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_legacy.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_convert.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_mmtf.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise2.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite1.py usr/share/doc/python-biopython-doc/Tests/test_prosite2.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests/test_trie.py usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10.maf usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_abs_abs.mafindex usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_abs_rel.mafindex usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_bad.maf usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_rel_abs.mafindex usr/share/doc/python-biopython-doc/Tests/tmp_MAF/ucsc_mm9_chr10_rel_rel.mafindex usr/share/doc/python-biopython-doc/Tests_avoid/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/changelog.Debian cd '/build/python-biopython-1.73+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python-biopython-sql.debhelper.log debian/python3-biopython-sql.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/python-biopython-1.73+dfsg' dh_fixperms find debian/python-biopython -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-biopython -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-biopython-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-biopython-sql -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-biopython-sql -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/build/python-biopython-1.73+dfsg' dh_missing -O--buildsystem=pybuild dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial.tex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/ACT_example.py exists in debian/tmp but is not installed to anywhere dh_missing: 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anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/protein.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/PF05371_seed.sth exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/my_blat.psl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/ec_5.4.2.2.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/simple.dnd exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/swissprot.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/opuntia.fasta exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/opuntia.aln exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/my_blast.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/fasta_iterator.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/m_cold.fasta exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/ls_orchid.gbk exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/make_subsmat.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/beta.faa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/alpha.faa exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/examples/www_blast.py exists in debian/tmp but is not installed to 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debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial/chapter_learning.tex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial/chapter_seqio.tex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial/chapter_blast.tex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial/chapter_seq_objects.tex exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial/chapter_introduction.aux exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial/chapter_cookbook.aux exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Doc/Tutorial/chapter_advanced.aux exists in debian/tmp but is not installed to anywhere dh_missing: 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dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/einfo3.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/esummary6.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/pubmed6.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/elink5.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/esummary4.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/nucleotide2.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/einfo4.xml exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/Entrez/journals.xml exists in debian/tmp but is not installed to anywhere 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anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml/nparK1.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml/nparK4.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml/baseml.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml/nhomo4.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml/nparK3.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Control_files/baseml/model5.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/bad_results.out exists in debian/tmp but is not installed to anywhere dh_missing: 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to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: 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usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: 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anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python3.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out exists in debian/tmp but is 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dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml/nparK4.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml/baseml.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml/nhomo4.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml/nparK3.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Control_files/baseml/model5.ctl exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/bad_results.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/yn00/yn00_long-4_8.out exists in debian/tmp but is not installed to anywhere dh_missing: 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usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: 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usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE/SE-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE/SE-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE/SE-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE/SE-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE/SE-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE/SE-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/SE/SE-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: 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exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: 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anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out exists in debian/tmp but is 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debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE/SE-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE/SE-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE/SE-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE/SE-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE/SE-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE/SE-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/SE/SE-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model5-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model0-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model1-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model6-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model5-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model6-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model2-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model3-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model6-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model3-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model8-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model7-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model2-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model0-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model0-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model6-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model0-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model3-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model4-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model0-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model1-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model4-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model7-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model5-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model1-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model5-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model2-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model7-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model2-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model6-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model4-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model1-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model3-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model5-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model8-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model8-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model5-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model2-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model4-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model8-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model1-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model4-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model2-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model3-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model7-4_6.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model8-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model1-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model8-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model5-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model0-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model0-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model4-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model8-4_5.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model2-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model7-4_4.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model4-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model6-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model3-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model7-4_4c.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model7-4_1.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model6-4_3.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model1-4_7.out exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/python2.7/dist-packages/Tests/PAML/Results/baseml/model/model3-4_6.out exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: python-biopython (2), python-biopython-doc (0), python-biopython-sql (1), python3-biopython (2), python3-biopython-sql (1) * dh_installdocs: python-biopython (4), python-biopython-doc (4), python-biopython-sql (0), python3-biopython (0), python3-biopython-sql (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -O--buildsystem=pybuild install -d debian/python-biopython/usr/lib/debug/.dwz/i386-linux-gnu dwz -q -mdebian/python-biopython/usr/lib/debug/.dwz/i386-linux-gnu/python-biopython.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/python-biopython.debug -- debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.i386-linux-gnu.so objcopy --compress-debug-sections debian/python-biopython/usr/lib/debug/.dwz/i386-linux-gnu/python-biopython.debug install -d debian/python3-biopython/usr/lib/debug/.dwz/i386-linux-gnu dwz -q -mdebian/python3-biopython/usr/lib/debug/.dwz/i386-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-i386-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/i386-linux-gnu/python3-biopython.debug dh_strip -O--buildsystem=pybuild install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/77/63baafd9db123d7914dbdd453d4e2eb3123768.debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/91/9c33b100317ef8dac6d6df44db3fa9d9a1586c.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/77/63baafd9db123d7914dbdd453d4e2eb3123768.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/77/63baafd9db123d7914dbdd453d4e2eb3123768.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/91/9c33b100317ef8dac6d6df44db3fa9d9a1586c.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/91/9c33b100317ef8dac6d6df44db3fa9d9a1586c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/77/63baafd9db123d7914dbdd453d4e2eb3123768.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/91/9c33b100317ef8dac6d6df44db3fa9d9a1586c.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/3e/e9233ccbf0ff2db8c8a8ef4e3895fb2cbdae0c.debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a6/15af7468f56d6b29559d2f0fd3054cfb3db5b6.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/3e/e9233ccbf0ff2db8c8a8ef4e3895fb2cbdae0c.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/3e/e9233ccbf0ff2db8c8a8ef4e3895fb2cbdae0c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/3e/e9233ccbf0ff2db8c8a8ef4e3895fb2cbdae0c.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a6/15af7468f56d6b29559d2f0fd3054cfb3db5b6.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a6/15af7468f56d6b29559d2f0fd3054cfb3db5b6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a6/15af7468f56d6b29559d2f0fd3054cfb3db5b6.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/7b/a2d72c12b730ebabceb4b0edf4e04b02b7bc57.debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ec/cf8700fcb83b5fc7a4ea136543babaae43b5ea.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/7b/a2d72c12b730ebabceb4b0edf4e04b02b7bc57.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/7b/a2d72c12b730ebabceb4b0edf4e04b02b7bc57.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/7b/a2d72c12b730ebabceb4b0edf4e04b02b7bc57.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ec/cf8700fcb83b5fc7a4ea136543babaae43b5ea.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ec/cf8700fcb83b5fc7a4ea136543babaae43b5ea.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/48 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/48/383bf3e44527efeb6f66fd4e62863e4f44125a.debug objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ec/cf8700fcb83b5fc7a4ea136543babaae43b5ea.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/48/383bf3e44527efeb6f66fd4e62863e4f44125a.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/48/383bf3e44527efeb6f66fd4e62863e4f44125a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.i386-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/46/935c37f7384c2e2570523f0e25b228a74faea7.debug objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/48/383bf3e44527efeb6f66fd4e62863e4f44125a.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/46/935c37f7384c2e2570523f0e25b228a74faea7.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/46/935c37f7384c2e2570523f0e25b228a74faea7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b0/c8e57aee3a7aa90cb232f757a7bf246e91448f.debug objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/46/935c37f7384c2e2570523f0e25b228a74faea7.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/31 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/31/7ac748e5f7c102447f55cdf7ee6fa5b9caf100.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b0/c8e57aee3a7aa90cb232f757a7bf246e91448f.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b0/c8e57aee3a7aa90cb232f757a7bf246e91448f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b0/c8e57aee3a7aa90cb232f757a7bf246e91448f.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.i386-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b5/494b9b79e3fcb8fb72658cce0d50c21b47bd80.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/31/7ac748e5f7c102447f55cdf7ee6fa5b9caf100.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/31/7ac748e5f7c102447f55cdf7ee6fa5b9caf100.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/31/7ac748e5f7c102447f55cdf7ee6fa5b9caf100.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b5/494b9b79e3fcb8fb72658cce0d50c21b47bd80.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b5/494b9b79e3fcb8fb72658cce0d50c21b47bd80.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/b5/494b9b79e3fcb8fb72658cce0d50c21b47bd80.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.i386-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2e/8bc4081eb9cd438507d5458fa6853288367826.debug install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/e6/79bc7a0adbaef9c84909b05583cf5395442873.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2e/8bc4081eb9cd438507d5458fa6853288367826.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2e/8bc4081eb9cd438507d5458fa6853288367826.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/e6/79bc7a0adbaef9c84909b05583cf5395442873.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/e6/79bc7a0adbaef9c84909b05583cf5395442873.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2e/8bc4081eb9cd438507d5458fa6853288367826.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/e6/79bc7a0adbaef9c84909b05583cf5395442873.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.i386-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a/d251f9d635a76bf347d435f612a1a805535bd1.debug install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/c8/0d0956ae777398ac79db1814bf3bccc671cd52.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a/d251f9d635a76bf347d435f612a1a805535bd1.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a/d251f9d635a76bf347d435f612a1a805535bd1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9a/d251f9d635a76bf347d435f612a1a805535bd1.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/5c51dd7722694f58fe1baf77bc4901e2341073.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/c8/0d0956ae777398ac79db1814bf3bccc671cd52.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/c8/0d0956ae777398ac79db1814bf3bccc671cd52.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/c8/0d0956ae777398ac79db1814bf3bccc671cd52.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.i386-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.i386-linux-gnu.so debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/20/f84386361e2875263c518e5e00a86afd47ce10.debug chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/20/f84386361e2875263c518e5e00a86afd47ce10.debug chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/20/f84386361e2875263c518e5e00a86afd47ce10.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.build-id/20/f84386361e2875263c518e5e00a86afd47ce10.debug debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.i386-linux-gnu.so chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/5c51dd7722694f58fe1baf77bc4901e2341073.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/5c51dd7722694f58fe1baf77bc4901e2341073.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python-biopython/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/python-biopython/dbgsym-root/usr/lib/debug/.dwz objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/5c51dd7722694f58fe1baf77bc4901e2341073.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so rm -fr debian/python-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e3/dfac0e3b72e6d6f02e2dc2a668dc6f0d8eb152.debug install -d debian/.debhelper/python-biopython/dbgsym-root/usr/share/doc ln -s python-biopython debian/.debhelper/python-biopython/dbgsym-root/usr/share/doc/python-biopython-dbgsym chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e3/dfac0e3b72e6d6f02e2dc2a668dc6f0d8eb152.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e3/dfac0e3b72e6d6f02e2dc2a668dc6f0d8eb152.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e3/dfac0e3b72e6d6f02e2dc2a668dc6f0d8eb152.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -O--buildsystem=pybuild rm -f debian/python-biopython/DEBIAN/shlibs rm -f debian/python3-biopython/DEBIAN/shlibs rm -f debian/python-biopython-doc/DEBIAN/shlibs rm -f debian/python-biopython-sql/DEBIAN/shlibs rm -f debian/python3-biopython-sql/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so install -d debian/python-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python-biopython.substvars debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.i386-linux-gnu.so dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-37m-i386-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-37m-i386-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/QCPSuperimposer/qcprot.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/motifs/_pwm.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Cluster/_cluster.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/cpairwise2.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/trie.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Align/_aligners.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/KDTree/_CKDTree.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/PDB/kdtrees.i386-linux-gnu.so debian/python-biopython/usr/lib/python2.7/dist-packages/Bio/Nexus/cnexus.i386-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python-biopython/DEBIAN/postinst cat debian/python-biopython.postinst.debhelper >> debian/python-biopython/DEBIAN/postinst chmod 0755 -- debian/python-biopython/DEBIAN/postinst chown 0:0 -- debian/python-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python-biopython/DEBIAN/prerm cat debian/python-biopython.prerm.debhelper >> debian/python-biopython/DEBIAN/prerm chmod 0755 -- debian/python-biopython/DEBIAN/prerm chown 0:0 -- debian/python-biopython/DEBIAN/prerm printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst chown 0:0 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm chown 0:0 -- debian/python3-biopython/DEBIAN/prerm install -d debian/python-biopython-doc/DEBIAN install -d debian/python-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python-biopython-sql/DEBIAN/postinst cat debian/python-biopython-sql.postinst.debhelper >> debian/python-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python-biopython-sql/DEBIAN/postinst chown 0:0 -- debian/python-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python-biopython-sql/DEBIAN/prerm cat debian/python-biopython-sql.prerm.debhelper >> debian/python-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python-biopython-sql/DEBIAN/prerm chown 0:0 -- debian/python-biopython-sql/DEBIAN/prerm install -d debian/python3-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst chown 0:0 -- debian/python3-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm chown 0:0 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python-biopython-doc.substvars echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -Pdebian/python-biopython-doc -UMulti-Arch echo misc:Depends= >> debian/python-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python-biopython-sql.substvars dpkg-gencontrol -ppython-biopython-sql -ldebian/changelog -Tdebian/python-biopython-sql.substvars -Pdebian/python-biopython-sql -UMulti-Arch echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -Pdebian/python3-biopython-sql -UMulti-Arch echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=2e8bc4081eb9cd438507d5458fa6853288367826 317ac748e5f7c102447f55cdf7ee6fa5b9caf100 425c51dd7722694f58fe1baf77bc4901e2341073 46935c37f7384c2e2570523f0e25b228a74faea7 919c33b100317ef8dac6d6df44db3fa9d9a1586c 9ad251f9d635a76bf347d435f612a1a805535bd1 a615af7468f56d6b29559d2f0fd3054cfb3db5b6 e3dfac0e3b72e6d6f02e2dc2a668dc6f0d8eb152 eccf8700fcb83b5fc7a4ea136543babaae43b5ea" -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/python-biopython.substvars echo misc:Pre-Depends= >> debian/python-biopython.substvars install -d debian/.debhelper/python-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython-biopython -ldebian/changelog -Tdebian/python-biopython.substvars -Pdebian/.debhelper/python-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python-biopython-dbgsym "-DDepends=python-biopython (= \${binary:Version})" "-DDescription=debug symbols for python-biopython" "-DBuild-Ids=20f84386361e2875263c518e5e00a86afd47ce10 3ee9233ccbf0ff2db8c8a8ef4e3895fb2cbdae0c 48383bf3e44527efeb6f66fd4e62863e4f44125a 7763baafd9db123d7914dbdd453d4e2eb3123768 7ba2d72c12b730ebabceb4b0edf4e04b02b7bc57 b0c8e57aee3a7aa90cb232f757a7bf246e91448f b5494b9b79e3fcb8fb72658cce0d50c21b47bd80 c80d0956ae777398ac79db1814bf3bccc671cd52 e679bc7a0adbaef9c84909b05583cf5395442873" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython -UMulti-Arch dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python:Provides} used, but is not defined chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control chown 0:0 -- debian/python3-biopython-sql/DEBIAN/control dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython-biopython -ldebian/changelog -Tdebian/python-biopython.substvars -Pdebian/python-biopython -UMulti-Arch dpkg-gencontrol: warning: package python-biopython-sql: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/python-biopython-sql/DEBIAN/control chown 0:0 -- debian/python-biopython-sql/DEBIAN/control chmod 0644 -- debian/python-biopython-doc/DEBIAN/control chown 0:0 -- debian/python-biopython-doc/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control chown 0:0 -- debian/python3-biopython/DEBIAN/control dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-biopython: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/python-biopython/DEBIAN/control chown 0:0 -- debian/python-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biopython-sql/DEBIAN/md5sums chown 0:0 -- debian/python-biopython-sql/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums chown 0:0 -- debian/python3-biopython-sql/DEBIAN/md5sums cd debian/python-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biopython/DEBIAN/md5sums chown 0:0 -- debian/python-biopython/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums chown 0:0 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums chown 0:0 -- debian/python-biopython-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/python-biopython .. dpkg-deb --build debian/.debhelper/python-biopython/dbgsym-root .. dpkg-deb --build debian/python3-biopython .. dpkg-deb --build debian/.debhelper/python3-biopython/dbgsym-root .. dpkg-deb --build debian/python-biopython-doc .. dpkg-deb --build debian/python-biopython-sql .. dpkg-deb --build debian/python3-biopython-sql .. dpkg-deb: building package 'python-biopython' in '../python-biopython_1.73+dfsg-1_i386.deb'. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.73+dfsg-1_i386.deb'. dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.73+dfsg-1_i386.deb'. dpkg-deb: building package 'python-biopython-dbgsym' in '../python-biopython-dbgsym_1.73+dfsg-1_i386.deb'. dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.73+dfsg-1_all.deb'. dpkg-deb: building package 'python-biopython-sql' in '../python-biopython-sql_1.73+dfsg-1_all.deb'. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.73+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-biopython_1.73+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3764 and its subdirectories I: Current time: Fri Jul 30 15:55:54 -12 2021 I: pbuilder-time-stamp: 1627703754 Sat Jun 27 21:33:01 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build2-i386.debian.net. Sat Jun 27 21:33:01 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build2-i386.debian.net. Sat Jun 27 22:23:51 UTC 2020 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. Sat Jun 27 22:23:52 UTC 2020 I: python-biopython_1.73+dfsg-1_i386.changes: Format: 1.8 Date: Fri, 11 Jan 2019 23:23:52 +0100 Source: python-biopython Binary: python-biopython python-biopython-dbgsym python-biopython-doc python-biopython-sql python3-biopython python3-biopython-dbgsym python3-biopython-sql Architecture: i386 all Version: 1.73+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-biopython - Python library for bioinformatics (implemented in Python 2) python-biopython-doc - Documentation for the Biopython library python-biopython-sql - Biopython support for the BioSQL database schema (Python 2) python3-biopython - Python library for bioinformatics (implemented in Python 3) python3-biopython-sql - Biopython support for the BioSQL database schema (Python 3) Changes: python-biopython (1.73+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 Checksums-Sha1: 141e637921ae82de5573e6d6a3b83545986a294b 271748 python-biopython-dbgsym_1.73+dfsg-1_i386.deb 3753ef230c1da9d8f9b5bbf7c5051109d7a90b42 14125172 python-biopython-doc_1.73+dfsg-1_all.deb d425763ea191193b0da2bb426a523c3552baa98d 31724 python-biopython-sql_1.73+dfsg-1_all.deb 13865ee752fd2177329d77a9bb83895a987c036e 14291 python-biopython_1.73+dfsg-1_i386.buildinfo 3087cb22f11cb5e8409322946d3aee315fce4012 1333612 python-biopython_1.73+dfsg-1_i386.deb 1503a4aeb385afae072052b56ecd52207a9b049e 292436 python3-biopython-dbgsym_1.73+dfsg-1_i386.deb 6376f46efb33c193d33181ca907b5f0e2db996d9 31796 python3-biopython-sql_1.73+dfsg-1_all.deb 97793c1bb56f1fc50e4000d655a3939ef3d66712 1287800 python3-biopython_1.73+dfsg-1_i386.deb Checksums-Sha256: 2406dcd68c10af01970bd8223f13827b0906d7c2209347b1d010a0e23d9e0e8b 271748 python-biopython-dbgsym_1.73+dfsg-1_i386.deb 595b84a9a0d9a21298fd0d6107a6408104dbbc455b98f5fe8e9edefe33613047 14125172 python-biopython-doc_1.73+dfsg-1_all.deb 690822b4c56c8cc0b43cd11fcded2b96e0291da6323c83d57c278eb69920981a 31724 python-biopython-sql_1.73+dfsg-1_all.deb ef6b8ed45be2806e5721255f005cc85eb02209625385d82b295519072a43e03e 14291 python-biopython_1.73+dfsg-1_i386.buildinfo e8100fb323cf4608a8407c6ea9c3b87a3e250b3520bd69ff1383ed920e8d215b 1333612 python-biopython_1.73+dfsg-1_i386.deb 4091038bbb48d66a05ed8db77ed2586c6bb5ab637a8970f08514884425139c03 292436 python3-biopython-dbgsym_1.73+dfsg-1_i386.deb f2304d819d0badfef63c589566a76172b6ac451224b9776df01eab3b982d2ef0 31796 python3-biopython-sql_1.73+dfsg-1_all.deb b7951e35bd236ff1c79be2973130bd0acf5346a675b82d3ed82bd67012c59871 1287800 python3-biopython_1.73+dfsg-1_i386.deb Files: d5f6b7e1bb06cd4f18ef7bc2258f1a10 271748 debug optional python-biopython-dbgsym_1.73+dfsg-1_i386.deb 3738e3687766bf6b45dfa21479b9de29 14125172 doc optional python-biopython-doc_1.73+dfsg-1_all.deb 35ca9e492e352cca8dc7d88ccbdbc5fa 31724 python optional python-biopython-sql_1.73+dfsg-1_all.deb 1611d62f445b18cccb839632f23cef03 14291 python optional python-biopython_1.73+dfsg-1_i386.buildinfo ddca456292eac335c551fbed6176dd50 1333612 python optional python-biopython_1.73+dfsg-1_i386.deb 383067e91d10517d40cbc8a266afde99 292436 debug optional python3-biopython-dbgsym_1.73+dfsg-1_i386.deb 6e7b4f0c5c7cd5b6e30db0e6e0e00ed1 31796 python optional python3-biopython-sql_1.73+dfsg-1_all.deb 00ceeead1637ea519aca2f6bbc0351a7 1287800 python optional python3-biopython_1.73+dfsg-1_i386.deb Sat Jun 27 22:23:55 UTC 2020 I: diffoscope 149 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.qaGkjToUGL/python-biopython_1.73+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.qaGkjToUGL/python-biopython_1.73+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.qaGkjToUGL/python-biopython_1.73+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.qaGkjToUGL/b1/python-biopython_1.73+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.qaGkjToUGL/b2/python-biopython_1.73+dfsg-1_i386.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 3.101s) 2.036s 6 calls xz 0.862s 35 calls diff 0.116s 12 calls cmp 0.057s 11 calls pdftotext 0.030s 2 calls gzip 0.001s 6 calls cmp (internal) ## compare_files (cumulative) (total time: 25.115s) 7.333s 1 call abc.DotChangesFile 6.390s 1 call abc.DebFile 5.760s 2 calls abc.XzFile 3.466s 1 call abc.DebDataTarFile 0.996s 1 call abc.GzipFile 0.894s 1 call abc.PdfFile 0.195s 1 call abc.TarFile 0.079s 1 call abc.Md5sumsFile ## container_extract (total time: 2.806s) 2.036s 6 calls diffoscope.comparators.xz.XzContainer 0.604s 2938 calls diffoscope.comparators.deb.DebTarContainer 0.128s 8 calls diffoscope.comparators.deb.DebContainer 0.030s 2 calls diffoscope.comparators.gzip.GzipContainer 0.008s 6 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.121s) 0.051s 7 calls abc.DebFile 0.017s 2 calls abc.Md5sumsFile 0.015s 1 call abc.DebDataTarFile 0.011s 1 call abc.GzipFile 0.010s 1 call abc.PdfFile 0.009s 1 call abc.TarFile 0.007s 2 calls abc.XzFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TextFile 0.000s 1 call abc.JSONFile ## main (total time: 8.196s) 8.089s 2 calls outputs 0.107s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer ## output (total time: 0.059s) 0.057s 1 call html 0.001s 1 call text 0.000s 1 call json ## recognizes (total time: 1.548s) 0.680s 294 calls diffoscope.comparators.debian.DebControlMember 0.568s 488 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.225s 10 calls diffoscope.comparators.binary.FilesystemFile 0.073s 314 calls diffoscope.comparators.utils.archive.ArchiveMember 0.000s 8 calls abc.DotChangesFile 0.000s 14 calls abc.Md5sumsFile Sat Jun 27 22:24:04 UTC 2020 E: python-biopython failed to build reproducibly in buster on i386. Sat Jun 27 22:24:06 UTC 2020 I: Submitting .buildinfo files to external archives: Sat Jun 27 22:24:06 UTC 2020 I: Submitting 16K b1/python-biopython_1.73+dfsg-1_i386.buildinfo.asc Sat Jun 27 22:24:07 UTC 2020 I: Submitting 16K b2/python-biopython_1.73+dfsg-1_i386.buildinfo.asc Sat Jun 27 22:24:08 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 27 22:24:08 UTC 2020 I: Done submitting .buildinfo files. Sat Jun 27 22:24:08 UTC 2020 I: Removing signed python-biopython_1.73+dfsg-1_i386.buildinfo.asc files: removed './b1/python-biopython_1.73+dfsg-1_i386.buildinfo.asc' removed './b2/python-biopython_1.73+dfsg-1_i386.buildinfo.asc'