Mon Aug 17 12:16:52 UTC 2020 I: starting to build proftmb/buster/i386 on jenkins on '2020-08-17 12:16' Mon Aug 17 12:16:52 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/7335/console.log Mon Aug 17 12:16:52 UTC 2020 I: Downloading source for buster/proftmb=1.1.12-8 --2020-08-17 12:16:53-- http://deb.debian.org/debian/pool/main/p/proftmb/proftmb_1.1.12-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1997 (2.0K) Saving to: ‘proftmb_1.1.12-8.dsc’ 0K . 100% 275M=0s 2020-08-17 12:16:53 (275 MB/s) - ‘proftmb_1.1.12-8.dsc’ saved [1997/1997] Mon Aug 17 12:16:53 UTC 2020 I: proftmb_1.1.12-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: proftmb Binary: proftmb Architecture: any Version: 1.1.12-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: http://rostlab.org/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/proftmb Vcs-Git: https://salsa.debian.org/med-team/proftmb.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), help2man, libgsl-dev, opt Package-List: proftmb deb science optional arch=any Checksums-Sha1: 79c9e839a73b96958c9393bfaf864964e211c2e3 419748 proftmb_1.1.12.orig.tar.gz 66b72d33a4b0b797cef65c697b37c5cc4616114b 4656 proftmb_1.1.12-8.debian.tar.xz Checksums-Sha256: ec444d2efad9f590de69dfff40f9900f41329f71813c85ab1005297b8c3e98f4 419748 proftmb_1.1.12.orig.tar.gz 35b0acb71f116f74becfe856d7e415ecb9e76ce5aec333d63ad367314901d508 4656 proftmb_1.1.12-8.debian.tar.xz Files: 2e915f466148cc09eb91f77ecc02a6c6 419748 proftmb_1.1.12.orig.tar.gz 4ad13397871f3a25dd5052db924e29a3 4656 proftmb_1.1.12-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvIc20RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHrUA//W4U1T89/7gTCmlpV0sAHr+sRA07VkWxd 1O4wP/WMUIOZyBm1xtV5Cz7VgDB1U9EsMZN7BiXKH3lncYXocpVYmwvOWrW2IR0F SsuqibOC3pusUE7NVt7TeJLNrdg5mpkn5cimdOxFx1r56fGz0LgiwS3kRrTY4kDe HmPP8zm8isvmxno43Zi6kSoMe5kHJjI0baraaiyCkTX6Y+Ch8HBnA3giRxsb3s1z upQEuTVpSF0UtkPiyjaU97BdXYLa0sbnY7WFUfhyBjOTv/xj5dat8HGqC+IZ25gb n+apUVnF6N4CMKRfodqaxyEscgl1PtGBGPlkXB2u0pVmi6SuBzQR4aWwo8J/gBnC VI0NNP+9Rjv2fORsjkDXutx36AEa5uS5ir8GoEdt56SXbGDWYjM9uU++rfLfg5Gl 6LCns/DnB+p5gXTTsvOExGMlBoVdPHvWy/V7fKa9XfZFDinxrz5iBatBAEfP8sj7 gTxUdLqDuFG5z0ZfzMej6hDm+mNBTXTcHQUkK+1O6soF6GFBq85t1JI3LvO7M7ww HvTP4zc2ywsQFoJQ3AktX2/RsQ93OQp4MyFg82kUuBFFESWxA3zn1yf/bj/4YbxQ S1J+9iRDSWbchhfg/aZvEikeq1O6Ed9l2wmtMVq2WFhJ6M+2YrijvtKXQXfwD0fi eEgMJBGFWJM= =I1It -----END PGP SIGNATURE----- Mon Aug 17 12:16:53 UTC 2020 I: Checking whether the package is not for us Mon Aug 17 12:16:53 UTC 2020 I: Starting 1st build on remote node profitbricks-build6-i386.debian.net. Mon Aug 17 12:16:53 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build6-i386.debian.net. Mon Aug 17 12:17:25 UTC 2020 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 19 06:39:54 -12 2021 I: pbuilder-time-stamp: 1632076794 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [proftmb_1.1.12-8.dsc] I: copying [./proftmb_1.1.12.orig.tar.gz] I: copying [./proftmb_1.1.12-8.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Oct 17 23:50:05 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./proftmb_1.1.12-8.dsc dpkg-source: info: extracting proftmb in proftmb-1.1.12 dpkg-source: info: unpacking proftmb_1.1.12.orig.tar.gz dpkg-source: info: unpacking proftmb_1.1.12-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid-dnl-in-makefiles.diff dpkg-source: info: applying gcc-6.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5707/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='298348c9c1c7428f88bb567a07c13356' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5707' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/pbuilderrc_6hGM --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/b1 --logfile b1/build.log proftmb_1.1.12-8.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux profitbricks-build6-i386 4.19.0-10-amd64 #1 SMP Debian 4.19.132-1 (2020-07-24) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 19 02:46 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/5707/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), help2man, libgsl-dev, opt dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on opt; however: Package opt is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libicu63{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} opt{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After unpacking 80.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 liblocale-gettext-perl i386 1.07-3+b4 [19.3 kB] Get: 8 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 11 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 12 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 14 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 25 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 31 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 32 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 35 http://deb.debian.org/debian buster/main i386 help2man i386 1.47.8 [177 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libgslcblas0 i386 2.5+dfsg-6 [99.2 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libgsl23 i386 2.5+dfsg-6 [855 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libgsl-dev i386 2.5+dfsg-6 [1076 kB] Get: 39 http://deb.debian.org/debian buster/main i386 opt i386 3.19-1.3+b1 [47.5 kB] Fetched 21.6 MB in 1s (40.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-3+b4_i386.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../12-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/proftmb-1.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package proftmb dpkg-buildpackage: info: source version 1.1.12-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf configure.ac:9: installing './compile' configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure.ac:50: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for main in -lopt... yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gsl/gsl_errno.h usability... yes checking gsl/gsl_errno.h presence... yes checking for gsl/gsl_errno.h... yes checking opt.h usability... yes checking opt.h presence... yes checking for opt.h... yes checking for an ANSI C-conforming const... yes checking for --enable-debug... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j18 make[1]: Entering directory '/build/proftmb-1.1.12' make all-recursive make[2]: Entering directory '/build/proftmb-1.1.12' Making all in examples make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/proftmb-1.1.12/examples' Making all in src make[3]: Entering directory '/build/proftmb-1.1.12/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o proftmb.o proftmb.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Backward.o Backward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BaumWelch.o BaumWelch.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Eval.o Eval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectA.o ExpectA.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ExpectC.o ExpectC.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Forward.o Forward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GradientDescent.o GradientDescent.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMEval.o HMMEval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HMMOutput.o HMMOutput.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HTools.o HTools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Krogh1Best.o Krogh1Best.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Load.o Load.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Output.o Output.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Par.o Par.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Params.o Params.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Posterior.o Posterior.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Regularization.o Regularization.cpp In file included from Backward.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from Params.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from BaumWelch.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Krogh1Best.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Par.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from ExpectC.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from ExpectC.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from HMMEval.h:5, from HMMEval.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from HTools.h:4, from HTools.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Regularization.cpp:7: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from HMMEval.h:5, from HMMEval.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from HTools.h:4, from Backward.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ In file included from HTools.h:5, from HTools.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ In file included from GradientDescent.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from Forward.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from HMMOutput.h:4, from HMMOutput.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from ExpectA.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Forward.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from Load.h:4, from Load.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from HMMOutput.h:5, from HMMOutput.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:6, from ExpectA.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:6, from Load.h:4, from Load.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from Posterior.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from BaumWelch.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from HMMOutput.cpp:1: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void DisplayArch(ostream&,Par&,uint,char* =""); ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void PrintEmit(ostream&,Par&,uint,char* =""); ^ In file included from Posterior.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from HMMOutput.cpp:2: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Krogh1Best.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ In file included from proftmb.cpp:14: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from Eval.h:11, from Eval.cpp:6: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from Load.h:4, from Par.cpp:4: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from Eval.h:11, from Eval.cpp:6: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from GradientDescent.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Eval.cpp:6: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *); ^~~~~ In file included from TrainSeq.h:5, from proftmb.cpp:15: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from proftmb.cpp:18: HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void DisplayArch(ostream&,Par&,uint,char* =""); ^ HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] void PrintEmit(ostream&,Par&,uint,char* =""); ^ In file included from proftmb.cpp:20: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Z_Calibrate(set >&,int,double) throw (string&); ^~~~~ In file included from proftmb.cpp:22: Eval.h:48:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *); ^~~~~ proftmb.cpp:68:53: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const char *, double, Par&, const char*, bool) throw (string &); ^~~~~ proftmb.cpp:273:78: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const char *datfile, double cut, Par& m, const char *name, bool multiQ) throw (string &) { ^~~~~ Eval.cpp:654:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] float RelativeEntropy(vector& A, vector& B) throw (char *){ ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Seq.o Seq.cpp Par.cpp:263:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadConnect(char* cf) throw (string&){ ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Sov.o Sov.cpp Par.cpp:348:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadL2L(char* l2lfile) throw (string&){ ^~~~~ Par.cpp:415:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadL2A(char* l2afile) throw (string&){ ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o structs.o structs.cpp Par.cpp:554:34: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::LoadA2E(char* a2efile) throw (string&){ ^~~~~ Par.cpp:652:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector& redux) throw (string&){ ^~~~~ Par.cpp:742:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::ReadZCurve(char *ifile) throw (string&){ ^~~~~ Par.cpp:763:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void Par::ReadNullFreq(char *ifile) throw (string&){ ^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tally.o Tally.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Tools.o Tools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o TrainSeq.o TrainSeq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Viterbi.o Viterbi.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Zscore.o Zscore.cpp In file included from structs.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from Seq.cpp:2: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Seq.cpp:4: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ In file included from TrainSeq.h:5, from Tally.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from Tally.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Seq.cpp:99:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool Seq::InitLabels(SS& sdat) throw (string&){ ^~~~~ sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt Seq.cpp:313:39: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] map Seq::Read(char* file) throw (string&){ ^~~~~ In file included from Zscore.cpp:24: Zscore.h:9:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] Z_Calibrate(set >&,int,double) throw (string&); ^~~~~ In file included from TrainSeq.h:5, from TrainSeq.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from TrainSeq.h:6, from TrainSeq.cpp:1: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ Zscore.cpp:36:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] int windowsize,double zmax) throw (string&){ ^~~~~ In file included from Viterbi.cpp:1: Seq.h:85:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] bool InitLabels(set >&) throw (string&); ^~~~~ Seq.h:194:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static map > > Read(char*) throw (string&); ^~~~~ In file included from Viterbi.cpp:2: Par.h:34:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2L(char*) throw (string&); ^~~~~ Par.h:35:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadL2A(char*) throw (string&); ^~~~~ Par.h:36:29: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadA2E(char*) throw (string&); ^~~~~ Par.h:37:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void LoadConnect(char*) throw (string&); ^~~~~ Par.h:40:32: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] vector&) throw (string&); ^~~~~ Par.h:120:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadZCurve(char *) throw (string &); ^~~~~ Par.h:121:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] static void ReadNullFreq(char *) throw (string &); ^~~~~ rm -f libhmm.a ar cru libhmm.a Backward.o BaumWelch.o Eval.o ExpectA.o ExpectC.o Forward.o GradientDescent.o HMMEval.o HMMOutput.o HTools.o Krogh1Best.o Load.o Output.o Par.o Params.o Posterior.o Regularization.o Seq.o Sov.o structs.o Tally.o Tools.o TrainSeq.o Viterbi.o Zscore.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libhmm.a g++ -g -O2 -ffile-prefix-map=/build/proftmb-1.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o proftmb proftmb.o libhmm.a -lgsl -lgslcblas -lm -lopt help2man -n 'per-residue prediction of bacterial transmembrane beta barrels' --output=proftmb.1 --no-info --include=proftmb_example.txt ./proftmb make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_auto_test make -j18 check VERBOSE=1 make[1]: Entering directory '/build/proftmb-1.1.12' Making check in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making check in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j18 install DESTDIR=/build/proftmb-1.1.12/debian/proftmb AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/proftmb-1.1.12' Making install in examples make[2]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Entering directory '/build/proftmb-1.1.12/examples' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' /usr/bin/install -c -m 644 16761001.Q 1a0s_P.f.1.Q 1af6_A.f.2.Q 1bt9_A.f.3.Q 1fep_A.f.4.Q 1prn.f.5.Q 1qd5_A.f.6.Q 1qj9_A.f.7.Q 1qjp_A.f.8.Q CADN_HUMAN.Q example.Q example_dat.txt example_proftmb_pretty.txt example_proftmb_tabular.txt YQIB_ECOLI.Q '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb/examples' make[3]: Leaving directory '/build/proftmb-1.1.12/examples' make[2]: Leaving directory '/build/proftmb-1.1.12/examples' Making install in src make[2]: Entering directory '/build/proftmb-1.1.12/src' make[3]: Entering directory '/build/proftmb-1.1.12/src' /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' /usr/bin/install -c proftmb '/build/proftmb-1.1.12/debian/proftmb/usr/bin' /usr/bin/install -c -m 644 proftmb.1 '/build/proftmb-1.1.12/debian/proftmb/usr/share/man/man1' make[3]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Leaving directory '/build/proftmb-1.1.12/src' make[2]: Entering directory '/build/proftmb-1.1.12' make[3]: Entering directory '/build/proftmb-1.1.12' make[3]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" /bin/mkdir -p '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' cp "."/input/* "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/" /usr/bin/install -c -m 644 README '/build/proftmb-1.1.12/debian/proftmb/usr/share/doc/proftmb' rm -rf `find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -name .svn` find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type d -exec chmod 0755 {} \; find "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb" -type f -exec chmod 0644 {} \; make install-data-hook make[4]: Entering directory '/build/proftmb-1.1.12' sed --in-place -e 's|__pkgdatadir__|/usr/share/proftmb|g' "/build/proftmb-1.1.12/debian/proftmb/usr/share/proftmb/options" make[4]: Leaving directory '/build/proftmb-1.1.12' make[3]: Leaving directory '/build/proftmb-1.1.12' make[2]: Leaving directory '/build/proftmb-1.1.12' make[1]: Leaving directory '/build/proftmb-1.1.12' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/proftmb-1.1.12' dh_compress -Xexample.Q make[1]: Leaving directory '/build/proftmb-1.1.12' dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/proftmb/usr/bin/proftmb was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'proftmb' in '../proftmb_1.1.12-8_i386.deb'. dpkg-deb: building package 'proftmb-dbgsym' in '../proftmb-dbgsym_1.1.12-8_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../proftmb_1.1.12-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5707 and its subdirectories I: Current time: Sun Sep 19 06:40:24 -12 2021 I: pbuilder-time-stamp: 1632076824 Mon Aug 17 12:17:25 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build12-i386.debian.net. Mon Aug 17 12:17:25 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build12-i386.debian.net. Mon Aug 17 12:21:40 UTC 2020 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. Mon Aug 17 12:21:40 UTC 2020 I: proftmb_1.1.12-8_i386.changes: Format: 1.8 Date: Thu, 18 Oct 2018 13:08:16 +0200 Source: proftmb Binary: proftmb proftmb-dbgsym Architecture: i386 Version: 1.1.12-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: proftmb - per-residue prediction of bacterial transmembrane beta barrels Changes: proftmb (1.1.12-8) unstable; urgency=medium . * pp-popularity-contest only suggested * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 480b9049688bb97bd962aac8645c61d82bdc4619 2654352 proftmb-dbgsym_1.1.12-8_i386.deb 4b8c26592715ef333f1b0e9a9d54db37f2846bc3 4780 proftmb_1.1.12-8_i386.buildinfo a0f288190cbae130228d7744148025c3b1526cec 409068 proftmb_1.1.12-8_i386.deb Checksums-Sha256: 6c5e3fdddfd7b0753e7b9fe371e4dedf0f6579c11b74e0b48d72b89b94a39626 2654352 proftmb-dbgsym_1.1.12-8_i386.deb 8d8b79759f47d8b261df01b58ad11bc56140bc8d2b369f1175b0a7907b7dcf9a 4780 proftmb_1.1.12-8_i386.buildinfo 941ca94290ecf9dfdcc6ea7681389cc43c1a63cf016823fbc9ed8e0a056c16b4 409068 proftmb_1.1.12-8_i386.deb Files: 9fe9f676728881d8f79a238504174a91 2654352 debug optional proftmb-dbgsym_1.1.12-8_i386.deb 6d88ffa98bf691fdb1d182e0f04e8155 4780 science optional proftmb_1.1.12-8_i386.buildinfo 872dd69aa96e792c4d084020255a1ded 409068 science optional proftmb_1.1.12-8_i386.deb Mon Aug 17 12:21:41 UTC 2020 I: diffoscope 156 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/proftmb_1.1.12-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/proftmb_1.1.12-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/proftmb_1.1.12-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/b1/proftmb_1.1.12-8_i386.changes /srv/reproducible-results/rbuild-debian/tmp.qwTsNjGZbj/b2/proftmb_1.1.12-8_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.254s) 0.253s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.055s) 0.054s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Aug 17 12:21:43 UTC 2020 I: diffoscope 156 found no differences in the changes files, and a .buildinfo file also exists. Mon Aug 17 12:21:43 UTC 2020 I: proftmb from buster built successfully and reproducibly on i386. Mon Aug 17 12:21:44 UTC 2020 I: Submitting .buildinfo files to external archives: Mon Aug 17 12:21:44 UTC 2020 I: Submitting 8.0K b1/proftmb_1.1.12-8_i386.buildinfo.asc Mon Aug 17 12:21:44 UTC 2020 I: Submitting 8.0K b2/proftmb_1.1.12-8_i386.buildinfo.asc Mon Aug 17 12:21:45 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 17 12:21:45 UTC 2020 I: Done submitting .buildinfo files. Mon Aug 17 12:21:45 UTC 2020 I: Removing signed proftmb_1.1.12-8_i386.buildinfo.asc files: removed './b1/proftmb_1.1.12-8_i386.buildinfo.asc' removed './b2/proftmb_1.1.12-8_i386.buildinfo.asc'