Wed Jun 26 11:56:26 UTC 2019 I: starting to build phipack/buster/i386 on jenkins on '2019-06-26 11:56' Wed Jun 26 11:56:26 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/613/console.log Wed Jun 26 11:56:26 UTC 2019 I: Downloading source for buster/phipack=0.0.20160614-3 --2019-06-26 11:56:27-- http://deb.debian.org/debian/pool/main/p/phipack/phipack_0.0.20160614-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/p/phipack/phipack_0.0.20160614-3.dsc [following] --2019-06-26 11:56:27-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/phipack/phipack_0.0.20160614-3.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 1992 (1.9K) Saving to: ‘phipack_0.0.20160614-3.dsc’ 0K . 100% 133M=0s 2019-06-26 11:56:27 (133 MB/s) - ‘phipack_0.0.20160614-3.dsc’ saved [1992/1992] Wed Jun 26 11:56:27 UTC 2019 I: phipack_0.0.20160614-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: phipack Binary: phipack Architecture: any Version: 0.0.20160614-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.maths.otago.ac.nz/~dbryant/software/phimanual.pdf Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/phipack Vcs-Git: https://salsa.debian.org/med-team/phipack.git Build-Depends: debhelper (>= 11~) Package-List: phipack deb science optional arch=any Checksums-Sha1: 54f764223d3d92f91501a88ab643f6ce2b0d8ab1 54192 phipack_0.0.20160614.orig.tar.xz e262f83a7a56954fc1750d1f760a6c08b8a13e43 3392 phipack_0.0.20160614-3.debian.tar.xz Checksums-Sha256: 3942fa6b4c19b01d76a480321fe3d155bce2d0b02ac1f4c294f4418d22110952 54192 phipack_0.0.20160614.orig.tar.xz 82b7ba85fbc555b88a7af2be3d43f48b55870fc95adbcb9b24b060f122894a80 3392 phipack_0.0.20160614-3.debian.tar.xz Files: b58097108c19846ebd8473be57f6cf9c 54192 phipack_0.0.20160614.orig.tar.xz f73f84b97fc912c308dcca6840f52c7d 3392 phipack_0.0.20160614-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltO8OgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLVQ//bOC5M8+/OvPjeUYM/6/RgJ41WAndBhUP 4VBbCd9OjubZeOReU+eB5geHe0ME1AX1GeSFtnG/2A/llABv84xE2U7EkiPdP8G9 I+i25RrJElcwXI0CU3K2pYpxMUCPir2tkHsQt+ed/XcDcL/gx3v5bgj2gDl/gld/ e81ctcixKQEwuCUdZY6uH8QtnBU86b68bMJV1MqLv5FimZ5EYKybFfx52BMdYFKi QJMHHdaE23PiyQKEQMxGhG6LJCH7yiNI/6IQc3MNlJVGAdPvLV8O+0kmEE04NWcd vpBPFuHxQq7TmgLemCUtfegIqS95YknENp9+faQDhtyRa/ot8B3IpjItLg896xEA E/f/+ltMfZ/rVWHVMz0gbdrHsZDR/yxDAb2YfLB3MmfDgW3ZDwX6RnwuC6ChCTb7 gkLr+SHdgGxXu636P8LHtKN6gW4UUnGgEo+ixeEeatCsv2xpy8ibAdVnQZ4KKIlt kYm2Rxq83HAcTscXNazqjkqL1WiX/ZAyTvESozH7TpgKMj7hY/Y9pR4U7rkJZZC6 5ZwjJAWpbtewNqH4lXO0NBhthjXX3XrN0fuGSceuFl/9J8nW1fTd0/L071huAWnO IRqrj01sCmSgydxTXGSe1ih5aGt4xOTXWF1Uwd39Ir12ulHDJhFOe+6gf0FJFaHg bwUZUD3FDSw= =SPFS -----END PGP SIGNATURE----- Wed Jun 26 11:56:27 UTC 2019 I: Checking whether the package is not for us Wed Jun 26 11:56:27 UTC 2019 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Wed Jun 26 11:56:27 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Wed Jun 26 12:04:54 UTC 2019 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 25 23:56:28 -12 2019 I: pbuilder-time-stamp: 1561550188 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [phipack_0.0.20160614-3.dsc] I: copying [./phipack_0.0.20160614.orig.tar.xz] I: copying [./phipack_0.0.20160614-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jul 17 19:48:56 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./phipack_0.0.20160614-3.dsc dpkg-source: info: extracting phipack in phipack-0.0.20160614 dpkg-source: info: unpacking phipack_0.0.20160614.orig.tar.xz dpkg-source: info: unpacking phipack_0.0.20160614-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.3 MB in 7s (2769 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... 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Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/phipack-0.0.20160614/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package phipack dpkg-buildpackage: info: source version 0.0.20160614-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j10 clean make[1]: Entering directory '/build/phipack-0.0.20160614/src' rm -f *.o rm -f Phi rm -f Profile make[1]: Leaving directory '/build/phipack-0.0.20160614/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules build dh build --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/phipack-0.0.20160614/src' gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall normal.c -o normal.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall stats.c -o stats.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall maxChi.c -o maxChi.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall main.c -o main.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall queue.c -o queue.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall graphCode.c -o graphCode.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall fasta.c -o fasta.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall phylip.c -o phylip.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall mem.c -o mem.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall misc.c -o misc.o graphCode.c:2:2: warning: "/*" within comment [-Wcomment] /* This file is part of PhiPack. stats.c: In function 'PHI': stats.c:112:24: warning: variable 'states_j' set but not used [-Wunused-but-set-variable] int p_i,p_j,states_i,states_j; ^~~~~~~~ stats.c:112:15: warning: variable 'states_i' set but not used [-Wunused-but-set-variable] int p_i,p_j,states_i,states_j; ^~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall pairScore.c -o pairScore.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall seqManip.c -o seqManip.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall global.c -o global.o gcc -c -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall profile.c -o profile.o gcc -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -o Profile normal.o stats.o fasta.o phylip.o mem.o misc.o pairScore.o seqManip.o global.o profile.o -lm -Wl,-z,relro -Wl,-z,now cp Profile ../ gcc -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -o Phi normal.o stats.o maxChi.o main.o queue.o graphCode.o fasta.o phylip.o mem.o misc.o pairScore.o seqManip.o global.o -lm -Wl,-z,relro -Wl,-z,now cp Phi ../ cd ppma_2_bmp && make make[2]: Entering directory '/build/phipack-0.0.20160614/src/ppma_2_bmp' g++ -g -O2 -ffile-prefix-map=/build/phipack-0.0.20160614=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -O3 -o ppma_2_bmp ppma_io.C bmp_io.C ppma_2_bmp.C -lm -Wl,-z,relro -Wl,-z,now ppma_io.C: In function 'bool ppma_write_test(char*)': ppma_io.C:855:7: warning: unused variable 'maxrgb' [-Wunused-variable] int maxrgb; ^~~~~~ bmp_io.C: In function 'bool bmp_08_data_read(std::ifstream&, long unsigned int, long int, unsigned char*)': bmp_io.C:152:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < width; i++ ) ~~^~~~~~~ bmp_io.C: In function 'void bmp_08_data_write(std::ofstream&, long unsigned int, long int, unsigned char*)': bmp_io.C:267:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < width; i++ ) ~~^~~~~~~ bmp_io.C: In function 'bool bmp_24_data_read(std::ifstream&, long unsigned int, long int, unsigned char*, unsigned char*, unsigned char*)': bmp_io.C:362:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < width; i++ ) ~~^~~~~~~ bmp_io.C: In function 'void bmp_24_data_write(std::ofstream&, long unsigned int, long int, unsigned char*, unsigned char*, unsigned char*)': bmp_io.C:512:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < width; i++ ) ~~^~~~~~~ bmp_io.C: In function 'bool bmp_header2_read(std::ifstream&, long unsigned int*, long unsigned int*, long int*, short unsigned int*, short unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*, long unsigned int*)': bmp_io.C:973:17: warning: unused variable 'c1' [-Wunused-variable] unsigned char c1; ^~ bmp_io.C:974:17: warning: unused variable 'c2' [-Wunused-variable] unsigned char c2; ^~ bmp_io.C: In function 'void bmp_palette_print(long unsigned int, unsigned char*, unsigned char*, unsigned char*, unsigned char*)': bmp_io.C:1238:18: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < colorsused; i++ ) ~~^~~~~~~~~~~~ bmp_io.C: In function 'bool bmp_palette_read(std::ifstream&, long unsigned int, unsigned char*, unsigned char*, unsigned char*, unsigned char*)': bmp_io.C:1321:18: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < colorsused; i++ ) ~~^~~~~~~~~~~~ bmp_io.C: In function 'void bmp_palette_write(std::ofstream&, long unsigned int, unsigned char*, unsigned char*, unsigned char*, unsigned char*)': bmp_io.C:1445:18: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < colorsused; i++ ) ~~^~~~~~~~~~~~ bmp_io.C: In function 'bool bmp_print_test(char*)': bmp_io.C:1524:22: warning: unused variable 'magic' [-Wunused-variable] unsigned short int magic; ^~~~~ bmp_io.C: In function 'bool bmp_08_write_test(char*)': bmp_io.C:2186:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < width; i++ ) ~~^~~~~~~ bmp_io.C:2165:7: warning: unused variable 'j2' [-Wunused-variable] int j2; ^~ bmp_io.C:2168:7: warning: unused variable 'result' [-Wunused-variable] int result; ^~~~~~ bmp_io.C: In function 'bool bmp_24_write_test(char*)': bmp_io.C:2448:20: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] for ( i = 0; i < width; i++ ) ~~^~~~~~~ bmp_io.C:2423:7: warning: unused variable 'result' [-Wunused-variable] int result; ^~~~~~ ppma_2_bmp.C: In function 'void timestamp()': ppma_2_bmp.C:363:10: warning: variable 'len' set but not used [-Wunused-but-set-variable] size_t len; ^~~ make[2]: Leaving directory '/build/phipack-0.0.20160614/src/ppma_2_bmp' cp ppma_2_bmp/ppma_2_bmp ../ make[1]: Leaving directory '/build/phipack-0.0.20160614/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --sourcedirectory=src dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install -O--sourcedirectory=src dh_install -O--sourcedirectory=src dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installinit -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_strip -O--sourcedirectory=src dh_makeshlibs -O--sourcedirectory=src dh_shlibdeps -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'phipack' in '../phipack_0.0.20160614-3_i386.deb'. dpkg-deb: building package 'phipack-dbgsym' in '../phipack-dbgsym_0.0.20160614-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../phipack_0.0.20160614-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12661 and its subdirectories I: Current time: Wed Jun 26 00:04:54 -12 2019 I: pbuilder-time-stamp: 1561550694 Wed Jun 26 12:04:54 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Wed Jun 26 12:04:54 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Wed Jun 26 12:05:17 UTC 2019 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Wed Jun 26 12:05:17 UTC 2019 I: phipack_0.0.20160614-3_i386.changes: Format: 1.8 Date: Wed, 18 Jul 2018 09:41:13 +0200 Source: phipack Binary: phipack phipack-dbgsym Architecture: i386 Version: 0.0.20160614-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: phipack - PHI test and other tests of recombination Changes: phipack (0.0.20160614-3) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 Checksums-Sha1: 9a3fb2412cdd4c1ea604db15af1e6e86b42353e6 178612 phipack-dbgsym_0.0.20160614-3_i386.deb 060e66a087af5e3d250f60ff0661a81ec4c0387c 4496 phipack_0.0.20160614-3_i386.buildinfo c40515d479ebe5db5756e4bbc4ec79ebabeb68de 46608 phipack_0.0.20160614-3_i386.deb Checksums-Sha256: f6cd6d525358355310dfa823dea77077420569dbf72472a6f6925e6e2b0e8372 178612 phipack-dbgsym_0.0.20160614-3_i386.deb 157cf5f87b4dfa9e359f1d7ecf4026bd55441c239e632bd4eb99456fb0d28298 4496 phipack_0.0.20160614-3_i386.buildinfo f0640aa94eeeb68c8ead985b913cc4e710337cf4b573c3b5c2a2a8789b3aff8d 46608 phipack_0.0.20160614-3_i386.deb Files: d11d5cf7848ac515535573060b6126b3 178612 debug optional phipack-dbgsym_0.0.20160614-3_i386.deb 6dd82065146096fe56be2294919bac25 4496 science optional phipack_0.0.20160614-3_i386.buildinfo e4ada1cffa6d4d9e42a79bce8fb79c0f 46608 science optional phipack_0.0.20160614-3_i386.deb Wed Jun 26 12:05:18 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.6Et7KxRZ4B/phipack_0.0.20160614-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.6Et7KxRZ4B/phipack_0.0.20160614-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.6Et7KxRZ4B/phipack_0.0.20160614-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.6Et7KxRZ4B/b1/phipack_0.0.20160614-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.6Et7KxRZ4B/b2/phipack_0.0.20160614-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.261s) 0.261s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.036s) 0.036s 10 calls diffoscope.comparators.binary.FilesystemFile Wed Jun 26 12:05:20 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 26 12:05:20 UTC 2019 I: phipack from buster built successfully and reproducibly on i386. Wed Jun 26 12:05:23 UTC 2019 I: Submitting .buildinfo files to external archives: Wed Jun 26 12:05:23 UTC 2019 I: Submitting 8.0K b1/phipack_0.0.20160614-3_i386.buildinfo.asc Wed Jun 26 12:05:25 UTC 2019 I: Submitting 8.0K b2/phipack_0.0.20160614-3_i386.buildinfo.asc Wed Jun 26 12:05:28 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 26 12:05:28 UTC 2019 I: Done submitting .buildinfo files. Wed Jun 26 12:05:28 UTC 2019 I: Removing signed phipack_0.0.20160614-3_i386.buildinfo.asc files: removed './b1/phipack_0.0.20160614-3_i386.buildinfo.asc' removed './b2/phipack_0.0.20160614-3_i386.buildinfo.asc'