Tue Jun 16 08:56:52 UTC 2020 I: starting to build octave-stk/buster/i386 on jenkins on '2020-06-16 08:56' Tue Jun 16 08:56:52 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/6930/console.log Tue Jun 16 08:56:52 UTC 2020 I: Downloading source for buster/octave-stk=2.5.1-2 --2020-06-16 08:56:52-- http://deb.debian.org/debian/pool/main/o/octave-stk/octave-stk_2.5.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2005 (2.0K) Saving to: ‘octave-stk_2.5.1-2.dsc’ 0K . 100% 196M=0s 2020-06-16 08:56:52 (196 MB/s) - ‘octave-stk_2.5.1-2.dsc’ saved [2005/2005] Tue Jun 16 08:56:52 UTC 2020 I: octave-stk_2.5.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: octave-stk Binary: octave-stk Architecture: any Version: 2.5.1-2 Maintainer: Debian Octave Group Uploaders: Julien Bect , Homepage: https://octave.sourceforge.io/stk/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/pkg-octave-team/octave-stk Vcs-Git: https://salsa.debian.org/pkg-octave-team/octave-stk.git Testsuite: autopkgtest-pkg-octave Build-Depends: debhelper-compat (= 12), dh-octave (>= 0.5.3) Package-List: octave-stk deb math optional arch=any Checksums-Sha1: edd3fecfbf6607b450e4d39f29f33154ae1eb1cd 358897 octave-stk_2.5.1.orig.tar.gz 03a195d6df8332946c39975227447b38cd337de0 10480 octave-stk_2.5.1-2.debian.tar.xz Checksums-Sha256: a38a7a6547fa702214c7e34b198d379e42b37eeeae8f27f9d95719502cb778f0 358897 octave-stk_2.5.1.orig.tar.gz 9b51e71fae30367a8df096faca74ab3657ec00f5a57350da09e4299417e4bbd0 10480 octave-stk_2.5.1-2.debian.tar.xz Files: 8b9bfca6c2c95baf31cc6842561c60be 358897 octave-stk_2.5.1.orig.tar.gz d2f29bf17026af101a70bb3971e2fc22 10480 octave-stk_2.5.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEP0ZDkUmP6HS9tdmPISSqGYN4XJAFAlwwbqoACgkQISSqGYN4 XJCzJA/9FawUazifxtXIgx23DXIzdT0wc85x8rAHCpt79O4ck9/C73BKYqZVTC9F cGgBtdi/WTKgqgb1VrgbVjJGS3skfnje+ZqaLVKMoT6vlc1ieIWfLvM2Q1wX9EUb ZhJDqk2q4DzjJ/CJHMPWJI5AnwlVMsziFJoeFImCm7KgdajbZk6LaIpYFQ26/k0n fOci9w0WmLlsfTwUYQYJ/aJ+XX2TyUWeeN3o+s6TVj0e/LpMHky3n5n/S8D8QJLi r55QDmMH3M00XDERZjE62SuI+rKjgyeAMqExIFH5FL5N60DfTjym6dLMjP4nQATg GLYnnoQFPIdIT4QGkQgtaN+qTDvVCPpinyzvGoPXtkGyixmJ0em3wFjX91XXR1wK 99/rvtGpkOBgWGAbUa2VdzNRAJgZZ6nrsp3aNuDV4uG18xnEAudfntq8Vvbbkj80 hqpwITjNWWDpfHGu1h45nNVtqKa1igFHeOybdc7Z6ba6UcwKaj0lti1l2wYU09X7 aJ0DnhnSZrziW9vquZYxGfQxhjKG8augNTLQwwtj6BZkmCwiBAI5AyTZ+fxYIcB6 SbFusKNAZrfBlUGpV1EQZvhJiOExZFVfJNbyPk2X2cbR+skpKs/xFINz4ltYge5j 5wiApoKsd16Jhq+J75Nox4vakg9g/9PuRUq1bTG70jxLB3zyato= =TdVZ -----END PGP SIGNATURE----- Tue Jun 16 08:56:52 UTC 2020 I: Checking whether the package is not for us Tue Jun 16 08:56:52 UTC 2020 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Tue Jun 16 08:56:52 UTC 2020 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Tue Jun 16 09:08:03 UTC 2020 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 15 20:56:54 -12 2020 I: pbuilder-time-stamp: 1592297814 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [octave-stk_2.5.1-2.dsc] I: copying [./octave-stk_2.5.1.orig.tar.gz] I: copying [./octave-stk_2.5.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 4 20:45:30 2019 -12 gpgv: using RSA key 3F464391498FE874BDB5D98F2124AA1983785C90 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./octave-stk_2.5.1-2.dsc dpkg-source: info: extracting octave-stk in octave-stk-2.5.1 dpkg-source: info: unpacking octave-stk_2.5.1.orig.tar.gz dpkg-source: info: unpacking octave-stk_2.5.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0002-Remove-the-MOLE.patch dpkg-source: info: applying 0003-Mark-expected-failure.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23672/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='72c1c523493949cba5ce6e9e6f5fb9c0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23672' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.0ynQoEfNpj/pbuilderrc_l53S --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.0ynQoEfNpj/b1 --logfile b1/build.log octave-stk_2.5.1-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux profitbricks-build2-i386 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) i686 GNU/Linux I: ls -l /bin total 5480 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 14 20:33 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/23672/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-octave (>= 0.5.3) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-octave (>= 0.5.3); however: Package dh-octave is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: aglfn{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} cme{a} debhelper{a} dh-autoreconf{a} dh-octave{a} dh-octave-autopkgtest{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-freefont-otf{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} gnuplot-data{a} gnuplot-nox{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libapp-cmd-perl{a} libarchive-zip-perl{a} libarpack2{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboolean-perl{a} libbsd0{a} libbtf1{a} libcairo2{a} libcamd2{a} libcapture-tiny-perl{a} libcarp-assert-more-perl{a} libcarp-assert-perl{a} libccolamd2{a} libcholmod3{a} libclass-load-perl{a} libclone-choose-perl{a} libcolamd2{a} libconfig-model-perl{a} libconvert-binhex-perl{a} libcroco3{a} libcups2{a} libcurl3-gnutls{a} libcxsparse3{a} libdata-optlist-perl{a} libdatrie1{a} libdbus-1-3{a} libdevel-callchecker-perl{a} libdouble-conversion1{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libencode-locale-perl{a} liberror-perl{a} libevdev2{a} libexpat1{a} libexporter-lite-perl{a} libexporter-tiny-perl{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libflac8{a} libfltk-gl1.3{a} libfltk1.3{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgd3{a} libgetopt-long-descriptive-perl{a} libgfortran-8-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglapi-mesa{a} libgles1{a} libgles2{a} libglib2.0-0{a} libglpk40{a} libglu1-mesa{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphicsmagick++-q16-12{a} libgraphicsmagick-q16-3{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhash-merge-perl{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu63{a} libinput-bin{a} libinput10{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-stringy-perl{a} libio-tiecombine-perl{a} libjack-jackd2-0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libklu1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} liblist-moreutils-perl{a} libllvm7{a} liblog-log4perl-perl{a} libltdl7{a} liblua5.3-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmailtools-perl{a} libmetis5{a} libmime-tools-perl{a} libmodule-implementation-perl{a} libmodule-pluggable-perl{a} libmodule-runtime-perl{a} libmouse-perl{a} libmousex-nativetraits-perl{a} libmousex-strictconstructor-perl{a} libmtdev1{a} libncurses-dev{a} libncurses6{a} libnet-http-perl{a} libnet-smtp-ssl-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} liboctave-dev{a} liboctave6{a} libogg0{a} libopengl0{a} libopus0{a} libpackage-stash-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-util-perl{a} libparams-validate-perl{a} libparse-debcontrol-perl{a} libparse-recdescent-perl{a} libpath-tiny-perl{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpod-pom-perl{a} libportaudio2{a} libpsl5{a} libpthread-stubs0-dev{a} libqhull7{a} libqrupdate1{a} libqscintilla2-qt5-13{a} libqscintilla2-qt5-l10n{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5widgets5{a} libreadline-dev{a} libreadline7{a} libregexp-common-perl{a} librtmp1{a} libsamplerate0{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libsndfile1{a} libssh2-1{a} libssl1.1{a} libstring-rewriteprefix-perl{a} libsub-exporter-perl{a} libsub-install-perl{a} libsuitesparseconfig5{a} libsz2{a} libtext-unidecode-perl{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libumfpack5{a} liburi-perl{a} libvorbis0a{a} libvorbisenc2{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwebpmux3{a} libwmf0.2-7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri2-0-dev{a} libxcb-dri3-0{a} libxcb-dri3-dev{a} libxcb-glx0{a} libxcb-glx0-dev{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present-dev{a} libxcb-present0{a} libxcb-randr0{a} libxcb-randr0-dev{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shape0{a} libxcb-shape0-dev{a} libxcb-shm0{a} libxcb-sync-dev{a} libxcb-sync1{a} libxcb-util0{a} libxcb-xfixes0{a} libxcb-xfixes0-dev{a} libxcb-xinerama0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxpm4{a} libxrender1{a} libxshmfence-dev{a} libxshmfence1{a} libxxf86vm-dev{a} libxxf86vm1{a} libyaml-perl{a} lsb-base{a} m4{a} man-db{a} mesa-common-dev{a} netbase{a} octave{a} octave-common{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} readline-common{a} sensible-utils{a} tex-common{a} texinfo{a} ucf{a} x11-common{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dev{a} x11proto-fixes-dev{a} x11proto-xext-dev{a} x11proto-xf86vidmode-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bash-completion curl dbus default-jre-headless epstool fonts-liberation ghostscript groff gsfonts krb5-locales libarchive-cpio-perl libatlas3-base libauthen-sasl-perl libclass-method-modifiers-perl libclone-perl libclone-pp-perl libconfig-model-approx-perl libconfig-model-dpkg-perl libconfig-model-lcdproc-perl libconfig-model-openssh-perl libconfig-model-systemd-perl libconfig-model-tkui-perl libdata-dump-perl libfuse-perl libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libipc-shareable-perl libjson-xs-perl liblog-dispatch-perl libltdl-dev libmail-sendmail-perl libopenblas-base libpackage-stash-xs-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libtext-levenshtein-damerau-perl libtie-ixhash-perl libunicode-utf8-perl libwacom-bin libxml-sax-expat-perl libyaml-libyaml-perl libyaml-syck-perl lynx octave-doc pstoedit publicsuffix qt5-gtk-platformtheme qttranslations5-l10n shared-mime-info wget xdg-user-dirs 0 packages upgraded, 350 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After unpacking 628 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB] Get: 9 http://deb.debian.org/debian buster/main i386 tex-common all 6.11 [53.1 kB] Get: 10 http://deb.debian.org/debian buster/main i386 netbase all 5.6 [19.4 kB] Get: 11 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 14 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 15 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 16 http://deb.debian.org/debian buster/main i386 aglfn all 1.7-3 [29.2 kB] Get: 17 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 18 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 19 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 20 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 21 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 22 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 24 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u3 [853 kB] Get: 25 http://deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libparams-util-perl i386 1.07-3+b4 [23.7 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libsub-install-perl all 0.928-1 [11.4 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libdata-optlist-perl all 0.110-1 [10.6 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libb-hooks-op-check-perl i386 0.22-1+b1 [11.5 kB] Get: 31 http://deb.debian.org/debian buster/main i386 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get: 32 http://deb.debian.org/debian buster/main i386 libdevel-callchecker-perl i386 0.008-1 [15.7 kB] Get: 33 http://deb.debian.org/debian buster/main i386 libparams-classify-perl i386 0.015-1+b1 [26.1 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 35 http://deb.debian.org/debian buster/main i386 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libpackage-stash-perl all 0.38-1 [21.7 kB] Get: 38 http://deb.debian.org/debian buster/main i386 libclass-load-perl all 0.25-1 [16.1 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libio-stringy-perl all 2.111-3 [56.5 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libparams-validate-perl i386 1.29-1+b1 [71.4 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libsub-exporter-perl all 0.987-1 [47.2 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libgetopt-long-descriptive-perl all 0.103-2 [27.8 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libio-tiecombine-perl all 1.005-1 [13.0 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libmodule-pluggable-perl all 5.2-1 [25.7 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libstring-rewriteprefix-perl all 0.007-2 [6448 B] Get: 46 http://deb.debian.org/debian buster/main i386 libapp-cmd-perl all 0.331-1 [63.9 kB] Get: 47 http://deb.debian.org/debian buster/main i386 libboolean-perl all 0.46-1 [11.1 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libcarp-assert-perl all 0.21-1 [18.2 kB] Get: 49 http://deb.debian.org/debian buster/main i386 libcarp-assert-more-perl all 1.16-1 [15.6 kB] Get: 50 http://deb.debian.org/debian buster/main i386 libfile-which-perl all 1.23-1 [16.6 kB] Get: 51 http://deb.debian.org/debian buster/main i386 libfile-homedir-perl all 1.004-1 [42.7 kB] Get: 52 http://deb.debian.org/debian buster/main i386 libclone-choose-perl all 0.010-1 [8424 B] Get: 53 http://deb.debian.org/debian buster/main i386 libhash-merge-perl all 0.300-1 [14.3 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libjson-perl all 4.02000-1 [88.8 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get: 56 http://deb.debian.org/debian buster/main i386 liblist-moreutils-perl i386 0.416-1+b4 [64.6 kB] Get: 57 http://deb.debian.org/debian buster/main i386 liblog-log4perl-perl all 1.49-1 [377 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libmouse-perl i386 2.5.6-1+b1 [175 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libmousex-nativetraits-perl all 1.09-2 [67.4 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libmousex-strictconstructor-perl all 0.02-2 [4996 B] Get: 61 http://deb.debian.org/debian buster/main i386 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libpath-tiny-perl all 0.108-1 [53.3 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libpod-pom-perl all 2.01-3 [67.0 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libregexp-common-perl all 2017060201-1 [177 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libconfig-model-perl all 2.133-1 [456 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libyaml-perl all 1.27-1 [66.8 kB] Get: 67 http://deb.debian.org/debian buster/main i386 cme all 1.029-1 [81.0 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 69 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 71 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 72 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 74 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 77 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 79 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 80 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 81 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 82 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 83 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 84 http://deb.debian.org/debian buster/main i386 libsuitesparseconfig5 i386 1:5.4.0+dfsg-1 [21.0 kB] Get: 85 http://deb.debian.org/debian buster/main i386 libamd2 i386 1:5.4.0+dfsg-1 [28.2 kB] Get: 86 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 87 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 88 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 89 http://deb.debian.org/debian buster/main i386 libarpack2 i386 3.7.0-2 [103 kB] Get: 90 http://deb.debian.org/debian buster/main i386 libcamd2 i386 1:5.4.0+dfsg-1 [28.9 kB] Get: 91 http://deb.debian.org/debian buster/main i386 libccolamd2 i386 1:5.4.0+dfsg-1 [30.1 kB] Get: 92 http://deb.debian.org/debian buster/main i386 libcolamd2 i386 1:5.4.0+dfsg-1 [26.0 kB] Get: 93 http://deb.debian.org/debian buster/main i386 libmetis5 i386 5.1.0.dfsg-5+b2 [173 kB] Get: 94 http://deb.debian.org/debian buster/main i386 libcholmod3 i386 1:5.4.0+dfsg-1 [251 kB] Get: 95 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 96 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 97 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 98 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 99 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 100 http://deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1+deb10u1 [70.1 kB] Get: 101 http://deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1+deb10u1 [110 kB] Get: 102 http://deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 103 http://deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3+deb10u2 [236 kB] Get: 104 http://deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2+deb10u1 [90.3 kB] Get: 105 http://deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 106 http://deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 107 http://deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 108 http://deb.debian.org/debian buster/main i386 libcurl3-gnutls i386 7.64.0-4+deb10u1 [355 kB] Get: 109 http://deb.debian.org/debian buster/main i386 libcxsparse3 i386 1:5.4.0+dfsg-1 [61.6 kB] Get: 110 http://deb.debian.org/debian buster/main i386 libfftw3-double3 i386 3.3.8-2 [640 kB] Get: 111 http://deb.debian.org/debian buster/main i386 libfftw3-single3 i386 3.3.8-2 [652 kB] Get: 112 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 113 http://deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 114 http://deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3+deb10u1 [395 kB] Get: 115 http://deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 116 http://deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB] Get: 117 http://deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB] Get: 118 http://deb.debian.org/debian buster/main i386 libglvnd0 i386 1.1.0-1 [41.9 kB] Get: 119 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 120 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 121 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 122 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB] Get: 123 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB] Get: 124 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 125 http://deb.debian.org/debian buster/main i386 libdrm-common all 2.4.97-1 [13.8 kB] Get: 126 http://deb.debian.org/debian buster/main i386 libdrm2 i386 2.4.97-1 [42.5 kB] Get: 127 http://deb.debian.org/debian buster/main i386 libglapi-mesa i386 18.3.6-2+deb10u1 [66.9 kB] Get: 128 http://deb.debian.org/debian buster/main i386 libx11-xcb1 i386 2:1.6.7-1 [190 kB] Get: 129 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0 i386 1.13.1-2 [101 kB] Get: 130 http://deb.debian.org/debian buster/main i386 libxcb-dri3-0 i386 1.13.1-2 [101 kB] Get: 131 http://deb.debian.org/debian buster/main i386 libxcb-glx0 i386 1.13.1-2 [117 kB] Get: 132 http://deb.debian.org/debian buster/main i386 libxcb-present0 i386 1.13.1-2 [99.4 kB] Get: 133 http://deb.debian.org/debian buster/main i386 libxcb-sync1 i386 1.13.1-2 [103 kB] Get: 134 http://deb.debian.org/debian buster/main i386 libxfixes3 i386 1:5.0.3-1 [22.4 kB] Get: 135 http://deb.debian.org/debian buster/main i386 libxdamage1 i386 1:1.1.4-3+b3 [15.0 kB] Get: 136 http://deb.debian.org/debian buster/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 137 http://deb.debian.org/debian buster/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 138 http://deb.debian.org/debian buster/main i386 libdrm-amdgpu1 i386 2.4.97-1 [30.1 kB] Get: 139 http://deb.debian.org/debian buster/main i386 libpciaccess0 i386 0.14-1 [55.7 kB] Get: 140 http://deb.debian.org/debian buster/main i386 libdrm-intel1 i386 2.4.97-1 [72.9 kB] Get: 141 http://deb.debian.org/debian buster/main i386 libdrm-nouveau2 i386 2.4.97-1 [28.0 kB] Get: 142 http://deb.debian.org/debian buster/main i386 libdrm-radeon1 i386 2.4.97-1 [32.5 kB] Get: 143 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 144 http://deb.debian.org/debian buster/main i386 libllvm7 i386 1:7.0.1-8 [13.0 MB] Get: 145 http://deb.debian.org/debian buster/main i386 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 146 http://deb.debian.org/debian buster/main i386 libsensors5 i386 1:3.5.0-3 [53.5 kB] Get: 147 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dri i386 18.3.6-2+deb10u1 [7102 kB] Get: 148 http://deb.debian.org/debian buster/main i386 libglx-mesa0 i386 18.3.6-2+deb10u1 [187 kB] Get: 149 http://deb.debian.org/debian buster/main i386 libglx0 i386 1.1.0-1 [31.3 kB] Get: 150 http://deb.debian.org/debian buster/main i386 libgl1 i386 1.1.0-1 [83.1 kB] Get: 151 http://deb.debian.org/debian buster/main i386 libgl2ps1.4 i386 1.4.0+dfsg1-2 [39.3 kB] Get: 152 http://deb.debian.org/debian buster/main i386 libglu1-mesa i386 9.0.0-2.1+b3 [179 kB] Get: 153 http://deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 154 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 155 http://deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB] Get: 156 http://deb.debian.org/debian buster/main i386 libtiff5 i386 4.1.0+git191117-2~deb10u1 [284 kB] Get: 157 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 158 http://deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB] Get: 159 http://deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB] Get: 160 http://deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB] Get: 161 http://deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 162 http://deb.debian.org/debian buster/main i386 libwebpmux3 i386 0.6.1-2 [99.1 kB] Get: 163 http://deb.debian.org/debian buster/main i386 libwmf0.2-7 i386 0.2.8.4-14 [172 kB] Get: 164 http://deb.debian.org/debian buster/main i386 libgraphicsmagick-q16-3 i386 1.4~hg15978-1+deb10u1 [1213 kB] Get: 165 http://deb.debian.org/debian buster/main i386 libgraphicsmagick++-q16-12 i386 1.4~hg15978-1+deb10u1 [141 kB] Get: 166 http://deb.debian.org/debian buster/main i386 libaec0 i386 1.0.2-1 [22.6 kB] Get: 167 http://deb.debian.org/debian buster/main i386 libsz2 i386 1.0.2-1 [6720 B] Get: 168 http://deb.debian.org/debian buster/main i386 libhdf5-103 i386 1.10.4+repack-10 [1310 kB] Get: 169 http://deb.debian.org/debian buster/main i386 libqrupdate1 i386 1.1.2-3 [38.7 kB] Get: 170 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 171 http://deb.debian.org/debian buster/main i386 libumfpack5 i386 1:5.4.0+dfsg-1 [149 kB] Get: 172 http://deb.debian.org/debian buster/main i386 liboctave6 i386 4.4.1-5 [7864 kB] Get: 173 http://deb.debian.org/debian buster/main i386 libasound2-data all 1.1.8-1 [59.6 kB] Get: 174 http://deb.debian.org/debian buster/main i386 libasound2 i386 1.1.8-1 [382 kB] Get: 175 http://deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 176 http://deb.debian.org/debian buster/main i386 libxcursor1 i386 1:1.1.15-2 [38.2 kB] Get: 177 http://deb.debian.org/debian buster/main i386 libxft2 i386 2.3.2-2 [58.2 kB] Get: 178 http://deb.debian.org/debian buster/main i386 libxinerama1 i386 2:1.1.4-2 [17.9 kB] Get: 179 http://deb.debian.org/debian buster/main i386 libfltk1.3 i386 1.3.4-9 [587 kB] Get: 180 http://deb.debian.org/debian buster/main i386 libfltk-gl1.3 i386 1.3.4-9 [73.5 kB] Get: 181 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 182 http://deb.debian.org/debian buster/main i386 libglpk40 i386 4.65-2 [438 kB] Get: 183 http://deb.debian.org/debian buster/main i386 libbtf1 i386 1:5.4.0+dfsg-1 [21.3 kB] Get: 184 http://deb.debian.org/debian buster/main i386 libklu1 i386 1:5.4.0+dfsg-1 [55.8 kB] Get: 185 http://deb.debian.org/debian buster/main i386 libopus0 i386 1.3-1 [191 kB] Get: 186 http://deb.debian.org/debian buster/main i386 libsamplerate0 i386 0.1.9-2 [949 kB] Get: 187 http://deb.debian.org/debian buster/main i386 libjack-jackd2-0 i386 1.9.12~dfsg-2 [328 kB] Get: 188 http://deb.debian.org/debian buster/main i386 libportaudio2 i386 19.6.0-1 [69.0 kB] Get: 189 http://deb.debian.org/debian buster/main i386 libqhull7 i386 2015.2-4 [206 kB] Get: 190 http://deb.debian.org/debian buster/main i386 libqscintilla2-qt5-l10n all 2.10.4+dfsg-2.1 [53.7 kB] Get: 191 http://deb.debian.org/debian buster/main i386 libdouble-conversion1 i386 3.1.0-3 [43.3 kB] Get: 192 http://deb.debian.org/debian buster/main i386 libpcre2-16-0 i386 10.32-5 [203 kB] Get: 193 http://deb.debian.org/debian buster/main i386 libqt5core5a i386 5.11.3+dfsg1-1+deb10u3 [2510 kB] Get: 194 http://deb.debian.org/debian buster/main i386 fontconfig i386 2.13.1-2 [405 kB] Get: 195 http://deb.debian.org/debian buster/main i386 libwayland-server0 i386 1.16.0-1 [33.7 kB] Get: 196 http://deb.debian.org/debian buster/main i386 libgbm1 i386 18.3.6-2+deb10u1 [69.5 kB] Get: 197 http://deb.debian.org/debian buster/main i386 libwayland-client0 i386 1.16.0-1 [27.0 kB] Get: 198 http://deb.debian.org/debian buster/main i386 libxcb-xfixes0 i386 1.13.1-2 [103 kB] Get: 199 http://deb.debian.org/debian buster/main i386 libegl-mesa0 i386 18.3.6-2+deb10u1 [143 kB] Get: 200 http://deb.debian.org/debian buster/main i386 libegl1 i386 1.1.0-1 [35.3 kB] Get: 201 http://deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB] Get: 202 http://deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB] Get: 203 http://deb.debian.org/debian buster/main i386 libevdev2 i386 1.6.0+dfsg-1 [29.8 kB] Get: 204 http://deb.debian.org/debian buster/main i386 libmtdev1 i386 1.1.5-1+b1 [22.9 kB] Get: 205 http://deb.debian.org/debian buster/main i386 libgudev-1.0-0 i386 232-2 [14.2 kB] Get: 206 http://deb.debian.org/debian buster/main i386 libwacom-common all 0.32-1 [39.1 kB] Get: 207 http://deb.debian.org/debian buster/main i386 libwacom2 i386 0.32-1 [20.0 kB] Get: 208 http://deb.debian.org/debian buster/main i386 libinput-bin i386 1.12.6-2 [16.9 kB] Get: 209 http://deb.debian.org/debian buster/main i386 libinput10 i386 1.12.6-2 [118 kB] Get: 210 http://deb.debian.org/debian buster/main i386 libdbus-1-3 i386 1.12.16-1 [226 kB] Get: 211 http://deb.debian.org/debian buster/main i386 libqt5dbus5 i386 5.11.3+dfsg1-1+deb10u3 [258 kB] Get: 212 http://deb.debian.org/debian buster/main i386 libqt5network5 i386 5.11.3+dfsg1-1+deb10u3 [763 kB] Get: 213 http://deb.debian.org/debian buster/main i386 libxcb-icccm4 i386 0.4.1-1.1 [28.1 kB] Get: 214 http://deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB] Get: 215 http://deb.debian.org/debian buster/main i386 libxcb-util0 i386 0.3.8-3+b2 [23.3 kB] Get: 216 http://deb.debian.org/debian buster/main i386 libxcb-image0 i386 0.4.0-1+b2 [24.8 kB] Get: 217 http://deb.debian.org/debian buster/main i386 libxcb-keysyms1 i386 0.4.0-1+b2 [16.7 kB] Get: 218 http://deb.debian.org/debian buster/main i386 libxcb-randr0 i386 1.13.1-2 [112 kB] Get: 219 http://deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB] Get: 220 http://deb.debian.org/debian buster/main i386 libxcb-render-util0 i386 0.3.9-1+b1 [18.7 kB] Get: 221 http://deb.debian.org/debian buster/main i386 libxcb-shape0 i386 1.13.1-2 [99.7 kB] Get: 222 http://deb.debian.org/debian buster/main i386 libxcb-xinerama0 i386 1.13.1-2 [99.0 kB] Get: 223 http://deb.debian.org/debian buster/main i386 libxcb-xkb1 i386 1.13.1-2 [126 kB] Get: 224 http://deb.debian.org/debian buster/main i386 libxi6 i386 2:1.7.9-1 [85.2 kB] Get: 225 http://deb.debian.org/debian buster/main i386 xkb-data all 2.26-2 [681 kB] Get: 226 http://deb.debian.org/debian buster/main i386 libxkbcommon0 i386 0.8.2-1 [128 kB] Get: 227 http://deb.debian.org/debian buster/main i386 libxkbcommon-x11-0 i386 0.8.2-1 [40.5 kB] Get: 228 http://deb.debian.org/debian buster/main i386 libqt5gui5 i386 5.11.3+dfsg1-1+deb10u3 [4844 kB] Get: 229 http://deb.debian.org/debian buster/main i386 libavahi-common-data i386 0.7-4+b1 [122 kB] Get: 230 http://deb.debian.org/debian buster/main i386 libavahi-common3 i386 0.7-4+b1 [56.2 kB] Get: 231 http://deb.debian.org/debian buster/main i386 libavahi-client3 i386 0.7-4+b1 [60.1 kB] Get: 232 http://deb.debian.org/debian buster/main i386 libcups2 i386 2.2.10-6+deb10u3 [338 kB] Get: 233 http://deb.debian.org/debian buster/main i386 libqt5widgets5 i386 5.11.3+dfsg1-1+deb10u3 [2537 kB] Get: 234 http://deb.debian.org/debian buster/main i386 libqt5printsupport5 i386 5.11.3+dfsg1-1+deb10u3 [234 kB] Get: 235 http://deb.debian.org/debian buster/main i386 libqscintilla2-qt5-13 i386 2.10.4+dfsg-2.1 [1101 kB] Get: 236 http://deb.debian.org/debian buster/main i386 libqt5sql5 i386 5.11.3+dfsg1-1+deb10u3 [157 kB] Get: 237 http://deb.debian.org/debian buster/main i386 libqt5help5 i386 5.11.3-4 [170 kB] Get: 238 http://deb.debian.org/debian buster/main i386 libqt5opengl5 i386 5.11.3+dfsg1-1+deb10u3 [173 kB] Get: 239 http://deb.debian.org/debian buster/main i386 libogg0 i386 1.3.2-1+b1 [19.4 kB] Get: 240 http://deb.debian.org/debian buster/main i386 libflac8 i386 1.3.2-3 [163 kB] Get: 241 http://deb.debian.org/debian buster/main i386 libvorbis0a i386 1.3.6-2 [93.3 kB] Get: 242 http://deb.debian.org/debian buster/main i386 libvorbisenc2 i386 1.3.6-2 [74.0 kB] Get: 243 http://deb.debian.org/debian buster/main i386 libsndfile1 i386 1.0.28-6 [274 kB] Get: 244 http://deb.debian.org/debian buster/main i386 libtext-unidecode-perl all 1.30-1 [103 kB] Get: 245 http://deb.debian.org/debian buster/main i386 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get: 246 http://deb.debian.org/debian buster/main i386 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get: 247 http://deb.debian.org/debian buster/main i386 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 248 http://deb.debian.org/debian buster/main i386 libxml-libxml-perl i386 2.0134+dfsg-1 [362 kB] Get: 249 http://deb.debian.org/debian buster/main i386 texinfo i386 6.5.0.dfsg.1-4+b1 [1425 kB] Get: 250 http://deb.debian.org/debian buster/main i386 octave-common all 4.4.1-5 [4365 kB] Get: 251 http://deb.debian.org/debian buster/main i386 octave i386 4.4.1-5 [2152 kB] Get: 252 http://deb.debian.org/debian buster/main i386 libncurses-dev i386 6.1+20181013-2+deb10u2 [360 kB] Get: 253 http://deb.debian.org/debian buster/main i386 libreadline-dev i386 7.0-5 [146 kB] Get: 254 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 255 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB] Get: 256 http://deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 257 http://deb.debian.org/debian buster/main i386 libaec-dev i386 1.0.2-1 [21.4 kB] Get: 258 http://deb.debian.org/debian buster/main i386 hdf5-helpers i386 1.10.4+repack-10 [35.2 kB] Get: 259 http://deb.debian.org/debian buster/main i386 libhdf5-cpp-103 i386 1.10.4+repack-10 [155 kB] Get: 260 http://deb.debian.org/debian buster/main i386 libhdf5-dev i386 1.10.4+repack-10 [2738 kB] Get: 261 http://deb.debian.org/debian buster/main i386 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 262 http://deb.debian.org/debian buster/main i386 x11proto-dev all 2018.4-4 [251 kB] Get: 263 http://deb.debian.org/debian buster/main i386 x11proto-core-dev all 2018.4-4 [3128 B] Get: 264 http://deb.debian.org/debian buster/main i386 libxau-dev i386 1:1.0.8-1+b2 [23.6 kB] Get: 265 http://deb.debian.org/debian buster/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB] Get: 266 http://deb.debian.org/debian buster/main i386 xtrans-dev all 1.3.5-1 [100 kB] Get: 267 http://deb.debian.org/debian buster/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B] Get: 268 http://deb.debian.org/debian buster/main i386 libxcb1-dev i386 1.13.1-2 [180 kB] Get: 269 http://deb.debian.org/debian buster/main i386 libx11-dev i386 2:1.6.7-1 [856 kB] Get: 270 http://deb.debian.org/debian buster/main i386 libdrm-dev i386 2.4.97-1 [131 kB] Get: 271 http://deb.debian.org/debian buster/main i386 mesa-common-dev i386 18.3.6-2+deb10u1 [611 kB] Get: 272 http://deb.debian.org/debian buster/main i386 libglvnd-core-dev i386 1.1.0-1 [13.2 kB] Get: 273 http://deb.debian.org/debian buster/main i386 libgles1 i386 1.1.0-1 [13.9 kB] Get: 274 http://deb.debian.org/debian buster/main i386 libgles2 i386 1.1.0-1 [18.8 kB] Get: 275 http://deb.debian.org/debian buster/main i386 libopengl0 i386 1.1.0-1 [31.0 kB] Get: 276 http://deb.debian.org/debian buster/main i386 libglvnd-dev i386 1.1.0-1 [5128 B] Get: 277 http://deb.debian.org/debian buster/main i386 libx11-xcb-dev i386 2:1.6.7-1 [192 kB] Get: 278 http://deb.debian.org/debian buster/main i386 libxcb-dri3-dev i386 1.13.1-2 [101 kB] Get: 279 http://deb.debian.org/debian buster/main i386 libxcb-render0-dev i386 1.13.1-2 [113 kB] Get: 280 http://deb.debian.org/debian buster/main i386 libxcb-randr0-dev i386 1.13.1-2 [116 kB] Get: 281 http://deb.debian.org/debian buster/main i386 libxcb-shape0-dev i386 1.13.1-2 [101 kB] Get: 282 http://deb.debian.org/debian buster/main i386 libxcb-xfixes0-dev i386 1.13.1-2 [106 kB] Get: 283 http://deb.debian.org/debian buster/main i386 libxcb-sync-dev i386 1.13.1-2 [105 kB] Get: 284 http://deb.debian.org/debian buster/main i386 libxcb-present-dev i386 1.13.1-2 [101 kB] Get: 285 http://deb.debian.org/debian buster/main i386 libxshmfence-dev i386 1.3-1 [8560 B] Get: 286 http://deb.debian.org/debian buster/main i386 libxcb-dri2-0-dev i386 1.13.1-2 [102 kB] Get: 287 http://deb.debian.org/debian buster/main i386 libxcb-glx0-dev i386 1.13.1-2 [123 kB] Get: 288 http://deb.debian.org/debian buster/main i386 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get: 289 http://deb.debian.org/debian buster/main i386 libxfixes-dev i386 1:5.0.3-1 [24.3 kB] Get: 290 http://deb.debian.org/debian buster/main i386 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get: 291 http://deb.debian.org/debian buster/main i386 libxdamage-dev i386 1:1.1.4-3+b3 [14.9 kB] Get: 292 http://deb.debian.org/debian buster/main i386 x11proto-xext-dev all 2018.4-4 [3128 B] Get: 293 http://deb.debian.org/debian buster/main i386 libxext-dev i386 2:1.3.3-1+b2 [110 kB] Get: 294 http://deb.debian.org/debian buster/main i386 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get: 295 http://deb.debian.org/debian buster/main i386 libxxf86vm-dev i386 1:1.1.4-1+b2 [26.3 kB] Get: 296 http://deb.debian.org/debian buster/main i386 libgl1-mesa-dev i386 18.3.6-2+deb10u1 [48.0 kB] Get: 297 http://deb.debian.org/debian buster/main i386 libblas-dev i386 3.8.0-2 [150 kB] Get: 298 http://deb.debian.org/debian buster/main i386 liblapack-dev i386 3.8.0-2 [2035 kB] Get: 299 http://deb.debian.org/debian buster/main i386 libfftw3-long3 i386 3.3.8-2 [326 kB] Get: 300 http://deb.debian.org/debian buster/main i386 libfftw3-quad3 i386 3.3.8-2 [1762 kB] Get: 301 http://deb.debian.org/debian buster/main i386 libfftw3-bin i386 3.3.8-2 [53.5 kB] Get: 302 http://deb.debian.org/debian buster/main i386 libfftw3-dev i386 3.3.8-2 [3170 kB] Get: 303 http://deb.debian.org/debian buster/main i386 libgfortran-8-dev i386 8.3.0-6 [603 kB] Get: 304 http://deb.debian.org/debian buster/main i386 gfortran-8 i386 8.3.0-6 [9465 kB] Get: 305 http://deb.debian.org/debian buster/main i386 gfortran i386 4:8.3.0-1 [1432 B] Get: 306 http://deb.debian.org/debian buster/main i386 liboctave-dev i386 4.4.1-5 [764 kB] Get: 307 http://deb.debian.org/debian buster/main i386 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 308 http://deb.debian.org/debian buster/main i386 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 309 http://deb.debian.org/debian buster/main i386 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 310 http://deb.debian.org/debian buster/main i386 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 311 http://deb.debian.org/debian buster/main i386 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 312 http://deb.debian.org/debian buster/main i386 liburi-perl all 1.76-1 [89.9 kB] Get: 313 http://deb.debian.org/debian buster/main i386 libhtml-parser-perl i386 3.72-3+b3 [106 kB] Get: 314 http://deb.debian.org/debian buster/main i386 libhtml-tree-perl all 5.07-2 [213 kB] Get: 315 http://deb.debian.org/debian buster/main i386 libio-html-perl all 1.001-1 [17.6 kB] Get: 316 http://deb.debian.org/debian buster/main i386 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 317 http://deb.debian.org/debian buster/main i386 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 318 http://deb.debian.org/debian buster/main i386 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 319 http://deb.debian.org/debian buster/main i386 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 320 http://deb.debian.org/debian buster/main i386 perl-openssl-defaults i386 3 [6782 B] Get: 321 http://deb.debian.org/debian buster/main i386 libnet-ssleay-perl i386 1.85-2+b1 [314 kB] Get: 322 http://deb.debian.org/debian buster/main i386 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 323 http://deb.debian.org/debian buster/main i386 libnet-http-perl all 6.18-1 [24.5 kB] Get: 324 http://deb.debian.org/debian buster/main i386 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 325 http://deb.debian.org/debian buster/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 326 http://deb.debian.org/debian buster/main i386 libwww-perl all 6.36-2 [188 kB] Get: 327 http://deb.debian.org/debian buster/main i386 liberror-perl all 0.17027-2 [30.9 kB] Get: 328 http://deb.debian.org/debian buster/main i386 libexporter-lite-perl all 0.08-1 [11.1 kB] Get: 329 http://deb.debian.org/debian buster/main i386 libparse-debcontrol-perl all 2.005-4 [25.7 kB] Get: 330 http://deb.debian.org/debian buster/main i386 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get: 331 http://deb.debian.org/debian buster/main i386 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get: 332 http://deb.debian.org/debian buster/main i386 libmailtools-perl all 2.18-1 [88.5 kB] Get: 333 http://deb.debian.org/debian buster/main i386 libmime-tools-perl all 5.509-1 [212 kB] Get: 334 http://deb.debian.org/debian buster/main i386 gnuplot-data all 5.2.6+dfsg1-1+deb10u1 [180 kB] Get: 335 http://deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB] Get: 336 http://deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB] Get: 337 http://deb.debian.org/debian buster/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get: 338 http://deb.debian.org/debian buster/main i386 libgd3 i386 2.2.5-5.2 [141 kB] Get: 339 http://deb.debian.org/debian buster/main i386 liblua5.3-0 i386 5.3.3-1.1 [140 kB] Get: 340 http://deb.debian.org/debian buster/main i386 libfribidi0 i386 1.0.5-3.1+deb10u1 [64.3 kB] Get: 341 http://deb.debian.org/debian buster/main i386 libthai-data all 0.1.28-2 [170 kB] Get: 342 http://deb.debian.org/debian buster/main i386 libdatrie1 i386 0.2.12-2 [40.7 kB] Get: 343 http://deb.debian.org/debian buster/main i386 libthai0 i386 0.1.28-2 [55.2 kB] Get: 344 http://deb.debian.org/debian buster/main i386 libpango-1.0-0 i386 1.42.4-8~deb10u1 [192 kB] Get: 345 http://deb.debian.org/debian buster/main i386 libpangoft2-1.0-0 i386 1.42.4-8~deb10u1 [71.3 kB] Get: 346 http://deb.debian.org/debian buster/main i386 libpangocairo-1.0-0 i386 1.42.4-8~deb10u1 [57.5 kB] Get: 347 http://deb.debian.org/debian buster/main i386 gnuplot-nox i386 5.2.6+dfsg1-1+deb10u1 [915 kB] Get: 348 http://deb.debian.org/debian buster/main i386 fonts-freefont-otf all 20120503-9 [3169 kB] Get: 349 http://deb.debian.org/debian buster/main i386 dh-octave-autopkgtest all 0.6.2 [8308 B] Get: 350 http://deb.debian.org/debian buster/main i386 dh-octave all 0.6.2 [19.9 kB] Fetched 135 MB in 31s (4403 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../002-libuchardet0_0.0.6-3_i386.deb ... 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Setting up libcarp-assert-perl (0.21-1) ... Setting up libgudev-1.0-0:i386 (232-2) ... Setting up libsz2:i386 (1.0.2-1) ... Setting up libvorbisenc2:i386 (1.3.6-2) ... Setting up libreadline7:i386 (7.0-5) ... Setting up libwacom-common (0.32-1) ... Setting up libmousex-nativetraits-perl (1.09-2) ... Setting up libxkbcommon0:i386 (0.8.2-1) ... Setting up libwayland-client0:i386 (1.16.0-1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gnuplot-data (5.2.6+dfsg1-1+deb10u1) ... Setting up libgfortran-8-dev:i386 (8.3.0-6) ... Setting up libamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libcarp-assert-more-perl (1.16-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libncurses-dev:i386 (6.1+20181013-2+deb10u2) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libxcb-xfixes0:i386 (1.13.1-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxau-dev:i386 (1:1.0.8-1+b2) ... Setting up libcolamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up libxshmfence-dev:i386 (1.3-1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libxcb-glx0:i386 (1.13.1-2) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up libhash-merge-perl (0.300-1) ... Setting up libxcb-keysyms1:i386 (0.4.0-1+b2) ... Setting up libaec-dev:i386 (1.0.2-1) ... Setting up libxcb-shape0:i386 (1.13.1-2) ... Setting up libavahi-common3:i386 (0.7-4+b1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3+deb10u2) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:i386 (0.3.9-1+b1) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libxcb-icccm4:i386 (0.4.1-1.1) ... Setting up libxcb-util0:i386 (0.3.8-3+b2) ... Setting up libreadline-dev:i386 (7.0-5) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libbtf1:i386 (1:5.4.0+dfsg-1) ... Setting up libxcb-xkb1:i386 (1.13.1-2) ... Setting up libxcb-image0:i386 (0.4.0-1+b2) ... Setting up libxcb-present0:i386 (1.13.1-2) ... Setting up libthai0:i386 (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libcamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libxcb-xinerama0:i386 (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libfreetype6:i386 (2.9.1-3+deb10u1) ... Setting up libglpk40:i386 (4.65-2) ... Setting up libxcb-sync1:i386 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libconfig-model-perl (2.133-1) ... Setting up libhdf5-103:i386 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:i386 (0.8.2-1) ... Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libqt5core5a:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:i386 (1.13.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libjack-jackd2-0:i386 (1.9.12~dfsg-2) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:i386 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libklu1:i386 (1:5.4.0+dfsg-1) ... Setting up libqt5dbus5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libccolamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libxcb-randr0:i386 (1.13.1-2) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libllvm7:i386 (1:7.0.1-8) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up libharfbuzz0b:i386 (2.3.1-1) ... Setting up libcxsparse3:i386 (1:5.4.0+dfsg-1) ... Setting up libsndfile1:i386 (1.0.28-6) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libwacom2:i386 (0.32-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libfftw3-dev:i386 (3.3.8-2) ... Setting up libavahi-client3:i386 (0.7-4+b1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libblas-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libsub-exporter-perl (0.987-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libdrm-amdgpu1:i386 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:i386 (1.13.1-2) ... Setting up libportaudio2:i386 (19.6.0-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libdrm-nouveau2:i386 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libxcb1-dev:i386 (1.13.1-2) ... Setting up libxpm4:i386 (1:3.5.12-1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libgbm1:i386 (18.3.6-2+deb10u1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libwmf0.2-7:i386 (0.2.8.4-14) ... Setting up libdrm-radeon1:i386 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libdrm-intel1:i386 (2.4.97-1) ... Setting up libgl1-mesa-dri:i386 (18.3.6-2+deb10u1) ... Setting up libhdf5-cpp-103:i386 (1.10.4+repack-10) ... Setting up libarpack2:i386 (3.7.0-2) ... Setting up libx11-dev:i386 (2:1.6.7-1) ... Setting up libxext6:i386 (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:i386 (1.13.1-2) ... Setting up libcurl3-gnutls:i386 (7.64.0-4+deb10u1) ... Setting up libqrupdate1:i386 (1.1.2-3) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libqt5network5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt5sql5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libegl-mesa0:i386 (18.3.6-2+deb10u1) ... Setting up libxcb-dri2-0-dev:i386 (1.13.1-2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up libxinerama1:i386 (2:1.1.4-2) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up liblapack-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libgraphicsmagick-q16-3 (1.4~hg15978-1+deb10u1) ... Setting up libxcb-render0-dev:i386 (1.13.1-2) ... Setting up libxcb-glx0-dev:i386 (1.13.1-2) ... Setting up libxcb-shape0-dev:i386 (1.13.1-2) ... Setting up libxext-dev:i386 (2:1.3.3-1+b2) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcups2:i386 (2.2.10-6+deb10u3) ... Setting up libegl1:i386 (1.1.0-1) ... Setting up libxcb-sync-dev:i386 (1.13.1-2) ... Setting up libgraphicsmagick++-q16-12 (1.4~hg15978-1+deb10u1) ... Setting up libxcb-xfixes0-dev:i386 (1.13.1-2) ... Setting up libfontconfig1:i386 (2.13.1-2) ... Setting up libcholmod3:i386 (1:5.4.0+dfsg-1) ... Setting up libstring-rewriteprefix-perl (0.007-2) ... Setting up libinput10:i386 (1.12.6-2) ... Setting up libx11-xcb-dev:i386 (2:1.6.7-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libdrm-dev:i386 (2.4.97-1) ... Setting up libxft2:i386 (2.3.2-2) ... Setting up libxdamage1:i386 (1:1.1.4-3+b3) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:i386 (1:1.1.4-1+b2) ... Setting up libxcursor1:i386 (1:1.1.15-2) ... Setting up libpango-1.0-0:i386 (1.42.4-8~deb10u1) ... Setting up libmime-tools-perl (5.509-1) ... Setting up libcairo2:i386 (1.16.0-4) ... Setting up libclass-load-perl (0.25-1) ... Setting up libxfixes-dev:i386 (1:5.0.3-1) ... Setting up libumfpack5:i386 (1:5.4.0+dfsg-1) ... Setting up libxcb-randr0-dev:i386 (1.13.1-2) ... Setting up libxcb-present-dev:i386 (1.13.1-2) ... Setting up libgd3:i386 (2.2.5-5.2) ... Setting up texinfo (6.5.0.dfsg.1-4+b1) ... Setting up mesa-common-dev:i386 (18.3.6-2+deb10u1) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-8~deb10u1) ... Setting up libparams-validate-perl (1.29-1+b1) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-8~deb10u1) ... Setting up libxdamage-dev:i386 (1:1.1.4-3+b3) ... Setting up libglx-mesa0:i386 (18.3.6-2+deb10u1) ... Setting up libglx0:i386 (1.1.0-1) ... Setting up libfltk1.3:i386 (1.3.4-9) ... Setting up libgl1:i386 (1.1.0-1) ... Setting up libgetopt-long-descriptive-perl (0.103-2) ... Setting up libglu1-mesa:i386 (9.0.0-2.1+b3) ... Setting up gnuplot-nox (5.2.6+dfsg1-1+deb10u1) ... update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up libapp-cmd-perl (0.331-1) ... Setting up libfltk-gl1.3:i386 (1.3.4-9) ... Setting up libqt5gui5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libglvnd-dev:i386 (1.1.0-1) ... Setting up libqt5widgets5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libqt5help5:i386 (5.11.3-4) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up liboctave6:i386 (4.4.1-5) ... Setting up libqt5printsupport5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up dh-octave-autopkgtest (0.6.2) ... Setting up cme (1.029-1) ... Setting up libqscintilla2-qt5-13 (2.10.4+dfsg-2.1) ... Setting up libqt5opengl5:i386 (5.11.3+dfsg1-1+deb10u3) ... Setting up libgl1-mesa-dev:i386 (18.3.6-2+deb10u1) ... Setting up octave (4.4.1-5) ... Setting up liboctave-dev (4.4.1-5) ... Setting up libwww-perl (6.36-2) ... Setting up libparse-debcontrol-perl (2.005-4) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up debhelper (12.1.1) ... Setting up dh-octave (0.6.2) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/octave-stk-2.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package octave-stk dpkg-buildpackage: info: source version 2.5.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Rafael Laboissiere dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=octave --with=octave dh_auto_clean -O--buildsystem=octave dh_octave_clean make[1]: Entering directory '/build/octave-stk-2.5.1/src' rm -f *.o *.mex make[1]: Leaving directory '/build/octave-stk-2.5.1/src' dh_autoreconf_clean -O--buildsystem=octave dh_clean -O--buildsystem=octave debian/rules binary dh binary --buildsystem=octave --with=octave dh_update_autotools_config -O--buildsystem=octave dh_autoreconf -O--buildsystem=octave dh_octave_version -O--buildsystem=octave Checking the Octave version... ok dh_auto_configure -O--buildsystem=octave dh_auto_build -O--buildsystem=octave dh_auto_test -O--buildsystem=octave create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=octave dh_prep -O--buildsystem=octave dh_auto_install -O--buildsystem=octave octave --no-gui --no-history --silent --no-init-file --no-window-system /usr/share/dh-octave/install-pkg.m warning: pkg: creating the directory /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages warning: pkg: creating the directory /build/octave-stk-2.5.1/debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages make[1]: Entering directory '/build/octave-stk-2.5.1/src' /usr/bin/mkoctfile --verbose --mex --output __stk_dist_pairwise__.mex stk_dist_pairwise.c /usr/bin/mkoctfile --verbose --mex --output __get_column_number__.mex get_column_number.c /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixy__.mex stk_dist_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_isdominated_mex__.mex stk_isdominated_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_matrixy.c -o stk_dist_matrixy.o /usr/bin/mkoctfile --verbose --mex --output __stk_mindist_mex__.mex stk_mindist_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_isdominated_mex.c -o stk_isdominated_mex.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_matrixy.c -o stk_gpquadform_matrixy.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG get_column_number.c -o get_column_number.o /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixx__.mex stk_dist_matrixx.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_filldist_discr_mex.c -o stk_filldist_discr_mex.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_pairwise.c -o stk_dist_pairwise.o /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixx__.mex stk_gpquadform_matrixx.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_mindist_mex.c -o stk_mindist_mex.o /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_matrixx.c -o stk_dist_matrixx.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_matrixx.c -o stk_gpquadform_matrixx.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_pairwise.c -o stk_gpquadform_pairwise.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_pairwise__.mex stk_dist_pairwise.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __get_column_number__.mex get_column_number.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_matrixy__.mex stk_dist_matrixy.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_mindist_mex__.mex stk_mindist_mex.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_matrixx__.mex stk_dist_matrixx.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_gpquadform_matrixx__.mex stk_gpquadform_matrixx.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_isdominated_mex__.mex stk_isdominated_mex.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro /usr/bin/mkoctfile --verbose --mex --output __stk_paretofind_mex__.mex stk_paretofind_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_paretofind_mex.c -o stk_paretofind_mex.o /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_vdc_rr2__.mex stk_sampling_vdc_rr2.c /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_sobol_mex__.mex stk_sampling_sobol_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_sampling_vdc_rr2.c -o stk_sampling_vdc_rr2.o /usr/bin/mkoctfile --verbose --mex --output __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_sampling_sobol_mex.c -o stk_sampling_sobol_mex.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_distrib_bivnorm0_cdf.c -o stk_distrib_bivnorm0_cdf.o /usr/bin/mkoctfile --verbose --mex --output __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.c wfg.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dominatedhv_mex.c -o stk_dominatedhv_mex.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_paretofind_mex__.mex stk_paretofind_mex.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG wfg.c -o wfg.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_sampling_vdc_rr2__.mex stk_sampling_vdc_rr2.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_sampling_sobol_mex__.mex stk_sampling_sobol_mex.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -mieee-fp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.o wfg.o -L/usr/lib/i386-linux-gnu/octave/4.4.1 -L/usr/lib/i386-linux-gnu -loctinterp -loctave -Wl,-z,relro make[1]: Leaving directory '/build/octave-stk-2.5.1/src' copyfile /build/octave-stk-2.5.1/./src/__get_column_number__.mex /build/octave-stk-2.5.1/./src/__stk_dist_matrixx__.mex /build/octave-stk-2.5.1/./src/__stk_dist_matrixy__.mex /build/octave-stk-2.5.1/./src/__stk_dist_pairwise__.mex /build/octave-stk-2.5.1/./src/__stk_distrib_bivnorm0_cdf__.mex /build/octave-stk-2.5.1/./src/__stk_dominatedhv_mex__.mex /build/octave-stk-2.5.1/./src/__stk_filldist_discr_mex__.mex /build/octave-stk-2.5.1/./src/__stk_gpquadform_matrixx__.mex /build/octave-stk-2.5.1/./src/__stk_gpquadform_matrixy__.mex /build/octave-stk-2.5.1/./src/__stk_gpquadform_pairwise__.mex /build/octave-stk-2.5.1/./src/__stk_isdominated_mex__.mex /build/octave-stk-2.5.1/./src/__stk_mindist_mex__.mex /build/octave-stk-2.5.1/./src/__stk_paretofind_mex__.mex /build/octave-stk-2.5.1/./src/__stk_sampling_sobol_mex__.mex /build/octave-stk-2.5.1/./src/__stk_sampling_vdc_rr2__.mex /build/octave-stk-2.5.1/./inst/i686-pc-linux-gnu-api-v52 For information about changes from previous versions of the stk package, run 'news stk'. dh_octave_check -O--buildsystem=octave Checking package... Checking m files ... [inst/arrays/@stk_dataframe/std.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/std.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (std(df1), std(x1))) ***** assert (isequal (std(df1, 0, 1), std(x1))) ***** assert (isequal (std(df1, 0, 2), std(x1, 0, 2))) ***** assert (isequal (std(df1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 2), std(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/rdivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/rdivide.m ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sum.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sum.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (sum(df1), sum(x1))) ***** assert (isequal (sum(df1, 1), sum(x1))) ***** assert (isequal (sum(df1, 2), sum(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/acosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosh (x); assert (strcmp (class (v), class (u)) && isequal (v, acosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/apply.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/apply.m ***** shared x, t, u t = rand (3, 2); x = stk_dataframe (t); ***** test u = apply (x, 1, @sum); ***** assert (isequal (u, sum (t, 1))) ***** test u = apply (x, 2, @sum); ***** assert (isequal (u, sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** test u = apply (x, 1, @min, []); ***** assert (isequal (u, min (t, [], 1))) ***** test u = apply (x, 2, @min, []); ***** assert (isequal (u, min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** test t = [1; 3; 2]; x = stk_dataframe (t); [M, k] = apply (x, 1, @max, []); assert ((M == 3) && (k == 2)); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/horzcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/horzcat.m ***** shared u, v u = rand(3, 2); v = rand(3, 2); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}, {'a'; 'b'; 'c'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test % incompatible row names x = stk_dataframe (u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {'y1' 'y2'}, {'a'; 'b'; 'd'}); z = horzcat (x, y); assert (isequal (z.rownames, {})); warning: Incompatible row names ! The output of horzcat will have no row names. ***** test x = stk_dataframe (u); z = horzcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test y = stk_dataframe (v); z = horzcat (u, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y, u, v); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v u v])); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mldivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mldivide.m ***** test x1_data = [57 7; 2 0]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'w' 'z'}, {'a'; 'b'}); y = x2 \ x1; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'x'; 'y'}, {'w'; 'z'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 \ x; ***** assert (isequal (y, stk_dataframe (y_data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = x \ 3; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isfinite.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/isfinite.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isfinite (x); assert (islogical (v) && isequal (v, isfinite (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cat.m ***** shared u, v, x, y u = rand(3, 2); v = rand(3, 2); x = stk_dataframe(u); y = stk_dataframe(v); ***** test % vertical z = cat(1, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u; v])); ***** error z = cat(3, x, y); ***** test % horizontal y = stk_dataframe(v, {'y1' 'y2'}); z = cat(2, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'' '' 'y1' 'y2'}))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/max.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/max.m ***** test stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('max', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (max(df1), max(x1))) ***** assert (isequal (max(df1, [], 1), max(x1))) ***** assert (isequal (max(df1, [], 2), max(x1, [], 2))) ***** error (max(df1, df1, 2)) ***** test x = stk_dataframe ([1; 3; 2]); [M, k] = max (x); assert ((M == 3) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isnan.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/isnan.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isnan (x); assert (islogical (v) && isequal (v, isnan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/fieldnames.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/fieldnames.m ***** test x = stk_dataframe (rand (3, 2), {'u' 'v'}); s1 = sort (fieldnames (x)); s2 = {'colnames' 'data' 'info' 'rownames' 'u' 'v'}; assert (all (strcmp (s1, s2))); ***** test x = stk_dataframe (rand (3, 2)); x.rownames(2:3) = {'aa', 'bb'}; x.colnames{2} = 'toto'; assert (isequal (fieldnames (x), ... {'toto' 'aa' 'bb' 'data' 'info' 'rownames' 'colnames'})); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isinf.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/isinf.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isinf (x); assert (islogical (v) && isequal (v, isinf (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosd.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/acosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosd (x); assert (strcmp (class (v), class (u)) && isequal (v, acosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/logical.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/logical.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = logical (x); assert (strcmp (class(v), 'logical') && isequal (v, logical (u))) ***** test u = (rand (4, 3) < 0.5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, u)) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, logical (u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ldivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/ldivide.m ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), pi); ***** error stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/end.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/end.m ***** shared x x = stk_dataframe ([1; 2; 3]); ***** assert (isequal (double (x(2:end, :)), [2; 3])) ***** assert (isequal (double (x(2:end)), [2; 3])) ***** assert (isequal (double (x(2, 1:end)), 2)) ***** assert (isequal (double (x(end)), 3)) ***** shared x x = stk_dataframe ([1 2; 3 4; 5 6]); ***** assert (isequal (x(2:end, :), x(2:3, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:3, 2))) ***** error x(1:end, 1:end, 1:end) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/vertcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/vertcat.m ***** shared u, v u = rand (3, 2); v = rand (3, 2); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names this time x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {}, {'d'; 'e'; 'f'}); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); assert (all (strcmp (z.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'}))); ***** test % the same, with row names only for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % incompatible variable names u = rand (3, 1); x = stk_dataframe (u, {'x'}); v = rand (3, 1); y = stk_dataframe (v, {'y'}); z = vertcat (x, y); assert (isequal (z.colnames, {})); warning: Incompatible column names ! The output of vertcat will have no column names. ***** test x = stk_dataframe (u); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test y = stk_dataframe (v); z = vertcat (u, y); assert (isa (z, 'stk_dataframe') && (isequal (double (z), [u; v]))); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y, u, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v; u; v])); ***** shared x, y x = stk_dataframe (rand (2, 3), {'a', 'b', 'c'}); y = stk_dataframe (rand (3, 2), {'a', 'b'}); y = horzcat (y, rand(3, 1)); % last column name is missing ***** test z = vertcat (x, y); assert (isequal (z.colnames, {'a' 'b' 'c'})) ***** test z = vertcat (y, x); assert (isequal (z.colnames, {'a' 'b' 'c'})) 10 tests, 10 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tand.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/tand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tand (x); assert (strcmp (class (v), class (u)) && isequal (v, tand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sin.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sin (x); assert (strcmp (class (v), class (u)) && isequal (v, sin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsasgn.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/subsasgn.m ***** shared x, s, t, data x = stk_dataframe (rand (3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x.rownames = s; assert (isequal (get (x, 'rownames'), s)) ***** test x.colnames = t; assert (isequal (get (x, 'rownames'), s)) assert (isequal (get (x, 'colnames'), t)) ***** test x.rownames{2} = 'dudule'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), t)) ***** test x.colnames{1} = 'martha'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), {'martha' 'yy'})) ***** test data = stk_dataframe (zeros(3, 2), {'x1' 'x2'}); u = rand(3, 1); data.x2 = u; assert (isequal (double (data), [zeros(3, 1) u])) ***** test data = stk_dataframe (zeros (3, 2), {'x1' 'x2'}); data.x2(3) = 27; assert (isequal (double (data), [0 0; 0 0; 0 27])) ***** error data.toto = rand (3, 1); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test x(:, 2) = []; assert (isequal (size (x), [4 2])) assert (isequal (double (x), [1 9; 2 10; 3 11; 4 12])) assert (isequal (get (x, 'colnames'), {'u' 'w'})) assert (isempty (get (x, 'rownames'))) ***** test x(2, :) = []; assert (isequal (size (x), [3 2])) assert (isequal (double (x), [1 9; 3 11; 4 12])) assert (isempty (get (x, 'rownames'))) ***** test x.rownames = {'a'; 'b'; 'c'}; x(2, :) = []; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 9; 4 12])) assert (isequal (x.rownames, {'a'; 'c'})) ***** test % change one value with matrix-style indexing x(1, 2) = 11; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 11; 4 12])) ***** test % change one value with linear indexing x(3) = 13; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 13; 4 12])) ***** assert (isequal (double (x(:, :)), [1 13; 4 12])); ***** test % assignment to a variable that doesn't exist A = stk_dataframe (7.1); clear B; B(2) = A; assert (strcmp (class (B), 'stk_dataframe')) assert (isequal (B.data, [0 7.1])); ***** test % repmat x = stk_dataframe (1); y = repmat (x, 2, 3); assert (isa (y, 'stk_dataframe')); assert (isequal (y.data, ones (2, 3))); ***** test x(:, :) = []; assert (isempty (x)); ***** test % Delete the only row of a one-row dataframe y1 = stk_dataframe ([1.2 3.33], {'mean', 'var'}); y1(1, :) = []; % Remove the only row of data assert (isequal (size (y1), [0 2])) assert (isequal (y1.colnames, {'mean', 'var'})) y11 = get (y1, 'mean'); assert (isempty (y11)); ***** error x{1} = 2; ***** error x(1, 2) = []; ***** error x(1, 2).a = 3; ***** shared x x = stk_dataframe((1:5)'); ***** test x(2) = 0; assert (isequal (double (x), [1; 0; 3; 4; 5])); ***** test x(3) = []; assert (isequal (double (x), [1; 0; 4; 5])); ***** test x(3, 1) = 0; assert (isequal(double(x), [1; 0; 0; 5])); ***** error x(3, 1, 1) = 297; ***** test % create a new row and a new column through subsasgn() x = stk_dataframe (rand (5, 2)); x(6, 3) = 7; assert(isequal(size(x), [6, 3])); ***** test x = stk_dataframe ([]); x.colnames{2} = 'v'; x.rownames{2} = 'b'; assert (isequal (x.rownames, {''; 'b'})); assert (isequal (x.colnames, {'' 'v'})); assert (isequal (size (x.data), [2 2]) && (all (isnan (x.data(:))))) ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test % change one column using ':', plain numeric argument y = [0; 9; 0; 9]; z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2).data, y)); ***** test % change one column using ':', skt_dataframe argument y = stk_dataframe ([0; 9; 0; 9], {'y'}); z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2), y)); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), [], {'a'; 'b'; 'c'; 'd'}); ***** test % change one row using ':', plain numeric argument y = [7 7 7]; z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :).data, y)); ***** test % change one row using ':', skt_dataframe argument y = stk_dataframe ([7 7 7], [], {'y'}); z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :), y)); ***** shared x x = stk_dataframe (zeros (2), {'u' 'v'}); ***** test % first column x(1:2) = 1; y = stk_dataframe ([1 0; 1 0], {'u' 'v'}); assert (isequal (x, y)); ***** test % one more element x(1:3) = 2; y = stk_dataframe ([2 2; 2 0], {'u' 'v'}); assert (isequal (x, y)); ***** error % too many elements x(1:5) = 3; ***** shared x x = stk_dataframe (randn (3, 3)); ***** test x.colnames{2} = 'y'; ***** assert (isequal (x.colnames, {'' 'y' ''})); ***** test x.rownames{2} = 'b'; ***** assert (isequal (x.rownames, {''; 'b'; ''})); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atand.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/atand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atand (x); assert (strcmp (class (v), class (u)) && isequal (v, atand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/transpose.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/transpose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data.'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u.')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log1p.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log1p.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log1p (x); assert (strcmp (class (v), class (u)) && isequal (v, log1p (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asin.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/asin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asin (x); assert (strcmp (class (v), class (u)) && isequal (v, asin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asinh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/asinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asinh (x); assert (strcmp (class (v), class (u)) && isequal (v, asinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plus.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/plus.m ***** test stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@plus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tanh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/tanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tanh (x); assert (strcmp (class (v), class (u)) && isequal (v, tanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tan.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/tan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tan (x); assert (strcmp (class (v), class (u)) && isequal (v, tan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/times.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/times.m ***** test stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@times, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/var.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/var.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (var(df1), var(x1))) ***** assert (isequal (var(df1, 0, 1), var(x1))) ***** assert (isequal (var(df1, 0, 2), var(x1, 0, 2))) ***** assert (isequal (var(df1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 2), var(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plot.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/plot.m ***** test % plot with x as a vector and z as a (univariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe(sin(x)); figure; plot(x, z); close(gcf); ***** test % plot with x as a vector and z as a (multivariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe([sin(x) cos(x)], {'sin' 'cos'}); figure; plot(x, z); close(gcf); ***** test % plot with x as a dataframe and z as a vector x = stk_dataframe(linspace(0, 2*pi, 30)'); z = sin(double(x)); figure; plot(x, z); close(gcf); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_dataframe ([0 3 2; 1 4 1; 7 0 2], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y, stk_hrect ([0 0 1; 7 4 2], cn))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosh (x); assert (strcmp (class (v), class (u)) && isequal (v, cosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_length.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_length.m ***** test x = stk_dataframe ([1 2; 3 4; 5 6]); assert (isequal (stk_length (x), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/realpow.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/realpow.m ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_rescale.m ***** test u = rand(5, 1) * 2; x = stk_dataframe(u); y = stk_rescale(x, [0; 2], [0; 3]); assert (isa (y, 'stk_dataframe') && isequal(double(y), u * 3/2)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mtimes.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mtimes.m ***** shared x, y, z, w u = [1 3 4; 2 7 6]; % 2 x 3 v = [6 2; 1 7; 9 4]; % 3 x 2 w = [45 39; 73 77]; % u * v x = stk_dataframe (u, {}, {'a'; 'b'}); y = stk_dataframe (v, {'c' 'd'}); z = x * y; ***** assert (isa (z, 'stk_dataframe')); ***** assert (isequal (z.data, w)); ***** assert (isequal (z.rownames, x.rownames)); ***** assert (isequal (z.colnames, y.colnames)); ***** shared x, y x = stk_dataframe (rand (3, 2), {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 * x; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** test y = x * 3; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cos.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cos (x); assert (strcmp (class (v), class (u)) && isequal (v, cos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ismember.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/ismember.m ***** shared u, x, u1, x1, u2, x2 u = rand (10, 4); x = stk_dataframe (u); x1 = x(1, :); u1 = double (x1); u2 = - ones (1, 4); x2 = stk_dataframe (u2); ***** assert (ismember (u1, x, 'rows')) ***** assert (ismember (x1, u, 'rows')) ***** assert (ismember (x1, x, 'rows')) ***** assert (~ ismember (u2, x, 'rows')) ***** assert (~ ismember (x2, u, 'rows')) ***** assert (~ ismember (x2, x, 'rows')) ***** test [b, idx] = ismember ([x2; x1; x1], x, 'rows'); assert (isequal (b, [false; true; true])); assert (isequal (idx, [0; 1; 1])) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/minus.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/minus.m ***** test stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@minus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosd.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosd (x); assert (strcmp (class (v), class (u)) && isequal (v, cosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/bsxfun.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/bsxfun.m ***** shared x1, x2, data1, data2 x1 = rand (3, 2); data1 = stk_dataframe (x1); x2 = rand (3, 2); data2 = stk_dataframe (x2); ***** test z = bsxfun (@plus, data1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, x1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, data1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** shared x, y x = stk_dataframe (randn (2), {'x1', 'x2'}, {'a'; 'b'}); y = stk_dataframe (randn (2), {'y1', 'y2'}, {'c'; 'd'}); ***** test z = x + y; assert (isequal (z.colnames, x.colnames)); assert (isequal (z.rownames, x.rownames)); ***** test z = y + x; assert (isequal (z.colnames, y.colnames)); assert (isequal (z.rownames, y.rownames)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mode.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mode.m ***** shared x1, df1 x1 = floor(3 * rand(9, 3)); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mode(df1), mode(x1))) ***** assert (isequal (mode(df1, 1), mode(x1))) ***** assert (isequal (mode(df1, 2), mode(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/power.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/power.m ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/expm1.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/expm1.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = expm1 (x); assert (strcmp (class (v), class (u)) && isequal (v, expm1 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sinh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sinh (x); assert (strcmp (class (v), class (u)) && isequal (v, sinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_dataframe.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_dataframe.m ***** test stk_test_class ('stk_dataframe') ***** error x = stk_dataframe (1, {}, {}, pi); ***** test % default constructor x = stk_dataframe (); assert (isa (x, 'stk_dataframe') && isequal (size (x), [0 0])) ***** test y = stk_dataframe (rand (3, 2)); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, pi); ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, [], {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, {}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}); y = stk_dataframe (x, [], {'a' 'b' 'c' 'd' 'e' 'f'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}, []); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, pi); ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe ([], {'a', 'b'}); assert (isequal (size (x), [0 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {})); ***** test x = stk_dataframe ([], {'a', 'b'}, {'toto'}); assert (isequal (size (x), [1 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {'toto'})); ***** test x = stk_dataframe (randn (10, 1), 'NOx'); assert (isequal (x.colnames, {'NOx'})); ***** test x = stk_dataframe (randn (1, 2), {}, 'aaa'); assert (isequal (x.rownames, {'aaa'})); 23 tests, 23 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ctranspose.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/ctranspose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atanh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/atanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atanh (x); assert (strcmp (class (v), class (u)) && isequal (v, atanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/display.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/display.m ***** test display (stk_dataframe (rand (3, 2))); = <3x2 stk_dataframe array> : -------- -------- * : 0.568678 0.364823 * : 0.402526 0.843000 * : 0.379801 0.217610 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sind.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sind (x); assert (strcmp (class (v), class (u)) && isequal (v, sind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/prod.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/prod.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (prod(df1), prod(x1))) ***** assert (isequal (prod(df1, 1), prod(x1))) ***** assert (isequal (prod(df1, 2), prod(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/size.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/size.m ***** shared x x = stk_dataframe([1 2; 3 4; 5 6]); ***** assert (isequal (size(x), [3 2])) ***** assert (numel(x) == 1) ***** assert (ndims(x) == 2) ***** test size(x); % force exploration of branch nargout == 0 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/reshape.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/reshape.m ***** test x = stk_dataframe (randn (10, 3)); y = reshape (x, 5, 6); assert (isa (y, 'stk_dataframe') && isequal (size (y), [5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acos.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/acos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acos (x); assert (strcmp (class (v), class (u)) && isequal (v, acos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/exp.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/exp.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = exp (x); assert (strcmp (class (v), class (u)) && isequal (v, exp (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/median.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/median.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (median(df1), median(x1))) ***** assert (isequal (median(df1, 1), median(x1))) ***** assert (isequal (median(df1, 2), median(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_sprintf.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_sprintf.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.997193 0.834656 * : 0.295721 0.492113 * : 0.321075 0.416372 ***** test format long; disp (x); : ---------------- ---------------- * : 0.99719254532762 0.83465591438247 * : 0.29572101454609 0.49211254367848 * : 0.32107541905410 0.41637194375460 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.997193 0.834656 * : 0.295721 0.492113 * : 0.321075 0.416372 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/abs.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/abs.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = abs (x); assert (strcmp (class (v), class (u)) && isequal (v, abs (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsref.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/subsref.m ***** shared x, s, t, data x = stk_dataframe(rand(3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x = set(x, 'rownames', s); assert (isequal (x.rownames, s)) assert (isequal (x.rownames{2}, 'b')) ***** test x = set(x, 'colnames', t); assert (isequal (x.rownames, s)) assert (isequal (x.colnames, t)) assert (isequal (x.colnames{2}, 'yy')) ***** shared u, data u = rand(3, 2); data = stk_dataframe(u, {'x1', 'x2'}); ***** assert (isequal (data.x2, u(:, 2))) ***** assert (data.x2(3) == u(3, 2)) ***** error t = data.toto; ***** error t = data(1, 1).zzz; % illegal multilevel indexing ***** error t = data(1, 1, 1); % too many indices ***** error t = data{1}; % curly braces not allowed ***** test % select rows and columns x = stk_dataframe (reshape (1:15, 5, 3), {'u' 'v' 'w'}); assert (isequal (x([3 5], 2), stk_dataframe ([8; 10], {'v'}))); ***** shared u, data u = rand(3, 1); data = stk_dataframe(u, {'x'}); ***** assert (isequal (data.x, u)) ***** assert (isequal (double (data), u)) ***** assert (isequal (double (data(2)), u(2))) ***** assert (isequal (double (data(3, 1)), u(3))) ***** error t = data(1, 1, 1); % too many indices ***** test x = stk_dataframe (randn (2, 2), {'u' 'v'}); y = x ([], :); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [0 2])); assert (isequal (y.colnames, {'u' 'v'})); ***** test x = stk_dataframe (randn (2, 2), [], {'a' 'b'}); y = x (:, []); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [2 0])); assert (isequal (y.rownames, {'a'; 'b'})); 16 tests, 16 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mrdivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mrdivide.m ***** test x1_data = [8 7; 58 49]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'x' 'y'}, {'u'; 'v'}); y = x1 / x2; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'u'; 'v'}, {'a'; 'b'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = x / 3; ***** assert (isequal (y, stk_dataframe ([1 1; 2 1; 3 4], {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = 3 / x; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sort.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sort.m ***** shared x, y x = stk_dataframe ([3; 2; 1], {}, {'a', 'b', 'c'}); y = sort (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.data, [1; 2; 3])) ***** assert (isequal (y.rownames, {'c'; 'b'; 'a'})) ***** assert (isequal (sort (x, []), y)) ***** assert (isequal (sort (x, 1), y)) ***** assert (isequal (sort (x, 2), x)) ***** error sort (x, 3) ***** assert (isequal (sort (x, [], 'ascend'), y)) ***** assert (isequal (sort (x, 1, 'ascend'), y)) ***** assert (isequal (sort (x, 2, 'ascend'), x)) ***** error sort (x, 3, 'ascend') ***** assert (isequal (sort (x, [], 'descend'), x)) ***** assert (isequal (sort (x, 1, 'descend'), x)) ***** assert (isequal (sort (x, 2, 'descend'), x)) ***** error sort (x, 3, 'descend') 15 tests, 15 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/quantile.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/quantile.m ***** shared x1, df1, p x1 = rand (9, 3); df1 = stk_dataframe (x1, {'a', 'b', 'c'}); p = 0.95; ***** assert (isequal (quantile (df1, p), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 1), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 2), quantile (x1, p, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log (x); assert (strcmp (class (v), class (u)) && isequal (v, log (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asind.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/asind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asind (x); assert (strcmp (class (v), class (u)) && isequal (v, asind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/disp.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/disp.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.844112 0.322020 * : 0.551299 0.686175 * : 0.743275 0.904299 ***** test format long; disp (x); : ---------------- ---------------- * : 0.84411239099653 0.32202014874228 * : 0.55129913256985 0.68617517096905 * : 0.74327454352597 0.90429944880726 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.844112 0.322020 * : 0.551299 0.686175 * : 0.743275 0.904299 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/length.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/length.m ***** error length (stk_dataframe ([1 2; 3 4; 5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/min.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/min.m ***** test stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('min', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (min(df1), min(x1))) ***** assert (isequal (min(df1, [], 1), min(x1))) ***** assert (isequal (min(df1, [], 2), min(x1, [], 2))) ***** error (min(df1, df1, 2)) ***** test x = stk_dataframe ([5; 2; 4]); [M, k] = min (x); assert ((M == 2) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log2.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log2.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log2 (x); assert (strcmp (class (v), class (u)) && isequal (v, log2 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/double.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/double.m ***** test u = rand(4, 3); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, u)) ***** test u = (rand(4, 3) < 0.5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_normalize.m ***** test u = rand (6, 2) * 2; x = stk_dataframe (u); y = stk_normalize (x); assert (isa (y, 'stk_dataframe') ... && stk_isequal_tolabs (double (y), stk_normalize (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mean.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mean.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mean(df1), mean(x1))) ***** assert (isequal (mean(df1, 1), mean(x1))) ***** assert (isequal (mean(df1, 2), mean(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atan.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/atan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atan (x); assert (strcmp (class (v), class (u)) && isequal (v, atan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sqrt.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sqrt.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sqrt (x); assert (strcmp (class (v), class (u)) && isequal (v, sqrt (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log10.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log10.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log10 (x); assert (strcmp (class (v), class (u)) && isequal (v, log10 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/fieldnames.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/fieldnames.m ***** test x = stk_factorialdesign ({0:1, 3:5}, {'u' 'v'}); fn1 = sort (fieldnames (x)); fn2 = {'colnames', 'data', 'info', 'levels', ... 'rownames', 'stk_dataframe', 'u', 'v'}; assert (isequal (fn1, fn2)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ndgrid.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/ndgrid.m ***** shared data data = stk_factorialdesign ({[0 1], [5 6 7]}); ***** test % nargout = 0 ndgrid (data); assert (isequal (ans, [0 0 0; 1 1 1])); ***** test % nargout = 1 x = ndgrid (data); assert (isequal (x, [0 0 0; 1 1 1])); ***** test % nargout = 2 [x, y] = ndgrid (data); assert (isequal ({x, y}, {[0 0 0; 1 1 1], [5 6 7; 5 6 7]})); ***** error % nargout = 3 [x, y, z] = ndgrid (data); ***** test data = stk_factorialdesign ({[], []}); [x, y] = ndgrid (data); assert (isequal ({x, y}, {[], []})); ***** test data = stk_factorialdesign ({[1:3]}); x = ndgrid (data); assert (isequal (x, [1; 2; 3])); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_factorialdesign ({[1 2], [3 4 5], [0 2 8]}, cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y, stk_hrect ([1 3 0; 2 5 8], cn))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_rescale.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 3], [0 3]}); z = stk_rescale (x, [1 5; 2 6], [0 0; 3 3]); assert (stk_isequal_tolabs (y, z)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ismember.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/ismember.m ***** shared A, B, BB, b i_max = 10; n = 100; d = 5; A = randi (i_max, n, d); levels = repmat ({1:i_max}, 1, d); levels{4} = 1:2:i_max; B = stk_factorialdesign (levels); BB = double (B); ***** test b = ismember (A, B); ***** assert (isequal (b, ismember (A, BB))); ***** test b = ismember (A, B, 'rows'); ***** assert (isequal (b, ismember (A, BB, 'rows'))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/uminus.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/uminus.m ***** test x = stk_factorialdesign ({1:3, 1:2}); y = stk_factorialdesign ({-(1:3), -(1:2)}); assert (isequal (-x, y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_dataframe.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'a'; 'b'; 'c'; 'd'}; x = stk_factorialdesign ({1:2, 1:2}, cn, rn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'; 'cc'; 'dd'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_factorialdesign.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_factorialdesign.m ***** test stk_test_class ('stk_factorialdesign') ***** test % constructor with two factors + column names x = stk_factorialdesign ({[0 1], [1 2 3]}, {'a', 'b'}); assert (isequal(x.colnames, {'a', 'b'})); assert (isequal(get (x, 'colnames'), {'a', 'b'})); ***** error stk_factorialdesign ('bouh'); ***** error stk_factorialdesign ({{'a' 'b'}}); ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_sampling_regulargrid (3^2, 2); ***** test format rat; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format long; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format short; disp (x); format (fmt); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test disp (stk_sampling_regulargrid (0^1, 1)); Empty data frame with 0 rows and 0 columns ***** test disp (stk_sampling_regulargrid (0^2, 2)); Empty data frame with 0 rows and 0 columns ***** test display (x); x = <9x2 stk_factorialdesign array> : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** error length (stk_sampling_regulargrid (7^2, 2)) % not defined ***** shared x x = stk_factorialdesign ({[0 1], [0 1]}); ***** assert (isequal (x(2:end, :), x(2:4, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:4, 2))) ***** error x(1:end, 1:end, 1:end) ***** shared x, y x = stk_sampling_regulargrid (3^2, 2); y = x; ***** test %%%% vercat z = vertcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% same thing, using cat(1, ...) z = cat (1, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% horzcat y.colnames = {'y1' 'y2'}; z = horzcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** test %%%% same thing, using cat (2, ...) z = cat (2, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** error cat (3, x, y) ***** shared x, t x = stk_sampling_regulargrid (3^2, 2); t = double (x); ***** assert (isequal (apply (x, 1, @sum), sum (t, 1))) ***** assert (isequal (apply (x, 2, @sum), sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** assert (isequal (apply (x, 1, @min, []), min (t, [], 1))) ***** assert (isequal (apply (x, 2, @min, []), min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** assert (isequal (min (x), min (t))) ***** assert (isequal (max (x), max (t))) ***** assert (isequal (std (x), std (t))) ***** assert (isequal (var (x), var (t))) ***** assert (isequal (sum (x), sum (t))) ***** assert (isequal (mean (x), mean (t))) ***** assert (isequal (mode (x), mode (t))) ***** assert (isequal (prod (x), prod (t))) ***** assert (isequal (median (x), median (t))) ***** shared x1, x2, x3, u1, u2, u3 x1 = stk_sampling_regulargrid ([4 3], 2); u1 = double (x1); x2 = stk_sampling_regulargrid ([3 4], 2); u2 = double (x2); x3 = x1 + 1; u3 = u1 + 1; ***** test z = bsxfun (@plus, x1, u2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, u1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, x1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = min (x1, x2); assert (isequal (double (z), min (u1, u2))); ***** test z = max (x1, x2); assert (isequal (double (z), max (u1, u2))); ***** error z = min (x1, x2, 1); ***** error z = max (x1, x2, 1); ***** test z = x1 + x2; assert (isequal (double (z), u1 + u2)); ***** test z = x1 - x2; assert (isequal (double (z), u1 - u2)); ***** test z = x1 .* x2; assert (isequal (double (z), u1 .* u2)); ***** test z = x3 .\ x2; assert (isequal (double (z), u3 .\ u2)); ***** test z = x2 ./ x3; assert (isequal (double (z), u2 ./ u3)); ***** test z = x3 .^ x2; assert (isequal (double (z), u3 .^ u2)); ***** test z = realpow (x3, x2); assert (isequal (double (z), realpow (u3, u2))); ***** test z = (x1 == x2); assert (isequal (double (z), (u1 == u2))); ***** test z = (x1 ~= x2); assert (isequal (double (z), (u1 ~= u2))); ***** test z = (x1 <= x2); assert (isequal (double (z), (u1 <= u2))); ***** test z = (x1 >= x2); assert (isequal (double (z), (u1 >= u2))); ***** test z = (x1 < x2); assert (isequal (double (z), (u1 < u2))); ***** test z = (x1 > x2); assert (isequal (double (z), (u1 > u2))); ***** test z = x1 & x2; assert (isequal (double (z), u1 & u2)); ***** test z = x1 | x2; assert (isequal (double (z), u1 | u2)); ***** test z = xor (x1, x2); assert (isequal (double (z), xor (u1, u2))); ***** shared x x = stk_factorialdesign ({[0 1], [0 1 2]}); ***** assert (strcmp (class (x'), 'stk_dataframe')) ***** assert (strcmp (class (x.'), 'stk_dataframe')) 60 tests, 60 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_normalize.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 1], [0 1]}); assert (stk_isequal_tolabs (stk_normalize (x), y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/horzcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/horzcat.m ***** shared d, x1, x2, x3 d = 10; x1 = stk_hrect (d); x2 = double (x1); x3 = [1:d; 0:(d-1)]; % illegal bounds ***** test y1 = horzcat (x1, x1); assert (isequal (size (y1), [2 2*d])); assert (strcmp (class (y1), 'stk_hrect')); ***** test y2 = horzcat (x1, x2); assert (isequal (size (y2), [2 2*d])); assert (strcmp (class (y2), 'stk_hrect')); ***** test y3 = horzcat (x2, x1); assert (isequal (size (y3), [2 2*d])); assert (strcmp (class (y3), 'stk_hrect')); ***** test lastwarn ('') y4 = horzcat (x1, x3); assert (isequal (size (y4), [2 2*d])); assert (strcmp (class (y4), 'stk_dataframe')); [warn_msg, warn_id] = lastwarn (); assert (strcmp (warn_id, 'STK:stk_hrect:horzcat:IllegalBounds')) warning: Illegal bounds, the result is not an stk_hrect object. 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/vertcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/vertcat.m ***** shared d, x, y d = 10; x = stk_hrect (d); y = double (x); ***** test z = vertcat (x, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (x, y); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (y, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_boundingbox.m ***** shared x, y lb = rand (1, 5); ub = lb + 1; cn = {'a', 'b', 'c', 'd', 'e'}; x = stk_hrect ([lb; ub], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y, x)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/ismember.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/ismember.m ***** shared n, box n = 5; box = stk_hrect (n); ***** assert (ismember (box(1, :), box)) ***** assert (ismember (box(2, :), box)) ***** assert (ismember (.5 * ones (1, 5), box)) ***** assert (~ ismember (box(1, :) - 1, box)) ***** assert (~ ismember (box(2, :) + 1, box)) ***** test y = double (box); y = [y; y + 2]; assert (isequal (ismember (y, box), [1; 1; 0; 0])) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_dataframe.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'lower_bounds'; 'upper_bounds'}; x = stk_hrect ([0 0; 1 1], cn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/subsref.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/subsref.m ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(:, [1 3 4]); assert (strcmp (class (B), 'stk_hrect')); assert (isequal (double (B), [0 0 0; 1 3 4])); ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(1, :); assert (strcmp (class (B), 'stk_dataframe')); assert (isequal (double (B), [0 0 0 0])); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_hrect.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_hrect.m ***** test stk_test_class ('stk_hrect') ***** shared dom ***** test dom = stk_hrect ([-1; 1], {'x'}); ***** assert (isequal (dom.colnames, {'x'})) ***** assert (isequal (dom.rownames, {'lower_bounds'; 'upper_bounds'})) ***** assert (isequal (dom.data, [-1; 1])) 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = stk_hrect ([2; 3]); x = 2 + rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** error y4 = stk_normalize (x, box, log (2)); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = [0 3 2; 1 4 1; 7 0 2]; ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y.data, [0 0 1; 7 4 2])); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_length.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_length.m ***** assert (isequal (stk_length ([1 2; 3 4; 5 6]), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_feval.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_feval.m ***** shared f, xt f = @(x)(- (0.7 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); xt = stk_sampling_regulargrid (20, 1, [0; 1]); ***** error yt = stk_feval (); ***** error yt = stk_feval (f); ***** test yt = stk_feval (f, xt); ***** test yt = stk_feval (f, xt, false); ***** test yt = stk_feval (f, xt, false, false); ***** test yt = stk_feval (f, xt, false, false, false); ***** error yt = stk_feval (f, xt, false, false, false, pi^2); ***** test N = 15; xt = stk_sampling_regulargrid (N, 1, [0; 1]); yt = stk_feval (f, xt); assert (isequal (size (yt), [N 1])); ***** test x = stk_dataframe ([1; 2; 3], {'x'}, {'a'; 'b'; 'c'}); y = stk_feval (@(u)(2 * u), x); assert (isequal (y.data, [2; 4; 6])); assert (isequal (y.rownames, {'a'; 'b'; 'c'})); ***** shared t, z_ref, n n = 20; t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_ref = [sin(t.data) cos(t.data)]; ***** test t.colnames = {'time'}; z = stk_feval ({@sin, @cos}, t); assert (isa (z, 'stk_dataframe')); assert (isequal (z.data, z_ref)); ***** test F = @(x)([sin(x) cos(x)]); z = stk_feval (F, t); assert (isequal (z.data, z_ref)); ***** test t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); F = {'sin', 'cos'}; z = stk_feval (F, t); assert (isequal (z.data, [sin(t.data) cos(t.data)])); assert (isequal (z.colnames, {'sin' 'cos'})); ***** test % vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t.^2 + (cos ((t - 1).*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); ***** test % not vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t^2 + (cos ((t - 1)*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t, [], [], false); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); 14 tests, 14 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = [2; 3]; x = box(1) + diff (box) * rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** error y4 = stk_normalize (x, box, log (2)); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_gausscov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_gausscov_iso (); ***** error stk_gausscov_iso (param); ***** error stk_gausscov_iso (param, x); ***** test stk_gausscov_iso (param, x, y); ***** test stk_gausscov_iso (param, x, y, -1); ***** test stk_gausscov_iso (param, x, y, -1, false); ***** error stk_gausscov_iso (param, x, y, -1, false, pi^2); ***** error stk_gausscov_iso (param, x, y, -2); ***** test stk_gausscov_iso (param, x, y, -1); ***** error stk_gausscov_iso (param, x, y, 0); ***** test stk_gausscov_iso (param, x, y, 1); ***** test stk_gausscov_iso (param, x, y, 2); ***** error stk_gausscov_iso (param, x, y, 3); ***** error stk_gausscov_iso (param, x, y, nan); ***** error stk_gausscov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_gausscov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_gausscov_iso (param, x, y, i); dK2 = stk_gausscov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_noisecov.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_noisecov.m ***** shared ni, lognoisevariance, diff ni = 5; lognoisevariance = 0.0; diff = -1; ***** error K = stk_noisecov(); ***** error K = stk_noisecov(ni); ***** test K = stk_noisecov(ni, lognoisevariance); ***** test K = stk_noisecov(ni, lognoisevariance, diff); ***** test K = stk_noisecov(ni, lognoisevariance, diff, true); ***** error K = stk_noisecov(ni, lognoisevariance, diff, true, pi^2); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern52.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_matern52.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern52 (); ***** test stk_rbf_matern52 (h); ***** test stk_rbf_matern52 (h, diff); ***** error stk_rbf_matern52 (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern52 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h); y = stk_rbf_matern52 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h, 2); y = stk_rbf_matern52 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern52 (inf) == 0) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern32.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_matern32.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern32 (); ***** test stk_rbf_matern32 (h); ***** test stk_rbf_matern32 (h, diff); ***** error stk_rbf_matern32 (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern32 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h); y = stk_rbf_matern32 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h, 2); y = stk_rbf_matern32 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern32 (inf) == 0) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_matern.m ***** shared nu, h, diff nu = 1.0; h = 1.0; diff = -1; ***** error stk_rbf_matern (); ***** error stk_rbf_matern (nu); ***** test stk_rbf_matern (nu, h); ***** test stk_rbf_matern (nu, h, diff); ***** error stk_rbf_matern (nu, h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 for nu = 0.1:0.2:5.0, x = stk_rbf_matern (nu, 0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); end 6 tests, 6 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_exponential.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_exponential.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_exponential (); ***** test stk_rbf_exponential (h); ***** test stk_rbf_exponential (h, diff); ***** error stk_rbf_exponential (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_exponential (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_exponential (h + delta) - stk_rbf_exponential (h)) / delta; d2 = stk_rbf_exponential (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h); y = stk_rbf_exponential (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h, 2); y = stk_rbf_exponential (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_exponential (inf) == 0) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_gauss.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_gauss.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_gauss (); ***** test stk_rbf_gauss (h); ***** test stk_rbf_gauss (h, diff); ***** error stk_rbf_gauss (h, diff, pi); ***** test % h = 0.0 => correlation = 1.0 x = stk_rbf_gauss (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_spherical.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_spherical.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_spherical (); ***** test stk_rbf_spherical (h); ***** test stk_rbf_spherical (h, diff); ***** error stk_rbf_spherical (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_spherical (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_spherical (h + delta) - stk_rbf_spherical (h)) / delta; d2 = stk_rbf_spherical (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** assert (stk_rbf_spherical (inf) == 0) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_expcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_expcov_aniso (); ***** error K0 = stk_expcov_aniso (param); ***** error K0 = stk_expcov_aniso (param, x); ***** test K1 = stk_expcov_aniso (param, x, y); ***** test K2 = stk_expcov_aniso (param, x, y, -1); ***** test K3 = stk_expcov_aniso (param, x, y, -1, false); ***** error K0 = stk_expcov_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_expcov_aniso (param, u, v, -1); K2 = stk_expcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_expcov_aniso (param, x, y, -2); ***** test stk_expcov_aniso (param, x, y, -1); ***** error stk_expcov_aniso (param, x, y, 0); ***** test stk_expcov_aniso (param, x, y, 1); ***** test stk_expcov_aniso (param, x, y, 2); ***** error stk_expcov_aniso (param, x, y, 3); ***** error stk_expcov_aniso (param, x, y, nan); ***** error stk_expcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_expcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_expcov_aniso (param, x, y, i); dK2 = stk_expcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.8]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error stk_materncov_aniso(); ***** error stk_materncov_aniso(param); ***** error stk_materncov_aniso(param, x); ***** test stk_materncov_aniso(param, x, y); ***** test stk_materncov_aniso(param, x, y, -1); ***** test stk_materncov_aniso(param, x, y, -1, false); ***** error stk_materncov_aniso(param, x, y, -1, false, pi^2); ***** error stk_materncov_aniso(param, x, y, -2); ***** test stk_materncov_aniso(param, x, y, -1); ***** error stk_materncov_aniso(param, x, y, 0); ***** test stk_materncov_aniso(param, x, y, 1); ***** test stk_materncov_aniso(param, x, y, 2); ***** test stk_materncov_aniso(param, x, y, 3); ***** error stk_materncov_aniso(param, x, y, 4); ***** error stk_materncov_aniso(param, x, y, nan); ***** error stk_materncov_aniso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.8; 2.7; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif(nx, dim); y = stk_sampling_randunif(ny, dim); ***** test K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1); assert(isequal(size(K1), [nx ny])); assert(stk_isequal_tolabs(K1, K2)); ***** test for i = 1:(dim+2), dK = stk_materncov_aniso(param, x, y, i); assert(isequal(size(dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:(dim+2), dK1 = stk_materncov_aniso(param, x, y, i); dK2 = stk_materncov_aniso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 19 tests, 19 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov52_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov52_iso (); ***** error stk_materncov52_iso (param); ***** error stk_materncov52_iso (param, x); ***** test stk_materncov52_iso (param, x, y); ***** test stk_materncov52_iso (param, x, y, -1); ***** test stk_materncov52_iso (param, x, y, -1, false); ***** error stk_materncov52_iso (param, x, y, -1, false, pi^2); ***** error stk_materncov52_iso (param, x, y, -2); ***** test stk_materncov52_iso (param, x, y, -1); ***** error stk_materncov52_iso (param, x, y, 0); ***** test stk_materncov52_iso (param, x, y, 1); ***** test stk_materncov52_iso (param, x, y, 2); ***** error stk_materncov52_iso (param, x, y, 3); ***** error stk_materncov52_iso (param, x, y, nan); ***** error stk_materncov52_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov52_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov52_iso (param, x, y, i); dK2 = stk_materncov52_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_gausscov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_gausscov_aniso (); ***** error K0 = stk_gausscov_aniso (param); ***** error K0 = stk_gausscov_aniso (param, x); ***** test K1 = stk_gausscov_aniso (param, x, y); ***** test K2 = stk_gausscov_aniso (param, x, y, -1); ***** test K3 = stk_gausscov_aniso (param, x, y, -1, false); ***** error K0 = stk_gausscov_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_gausscov_aniso (param, u, v, -1); K2 = stk_gausscov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_gausscov_aniso (param, x, y, -2); ***** test stk_gausscov_aniso (param, x, y, -1); ***** error stk_gausscov_aniso (param, x, y, 0); ***** test stk_gausscov_aniso (param, x, y, 1); ***** test stk_gausscov_aniso (param, x, y, 2); ***** error stk_gausscov_aniso (param, x, y, 3); ***** error stk_gausscov_aniso (param, x, y, nan); ***** error stk_gausscov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_gausscov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_gausscov_aniso (param, x, y, i); dK2 = stk_gausscov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_sphcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_sphcov_aniso (); ***** error K0 = stk_sphcov_aniso (param); ***** error K0 = stk_sphcov_aniso (param, x); ***** test K1 = stk_sphcov_aniso (param, x, y); ***** test K2 = stk_sphcov_aniso (param, x, y, -1); ***** test K3 = stk_sphcov_aniso (param, x, y, -1, false); ***** error K0 = stk_sphcov_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_sphcov_aniso (param, u, v, -1); K2 = stk_sphcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_sphcov_aniso (param, x, y, -2); ***** test stk_sphcov_aniso (param, x, y, -1); ***** error stk_sphcov_aniso (param, x, y, 0); ***** test stk_sphcov_aniso (param, x, y, 1); ***** test stk_sphcov_aniso (param, x, y, 2); ***** error stk_sphcov_aniso (param, x, y, 3); ***** error stk_sphcov_aniso (param, x, y, nan); ***** error stk_sphcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_sphcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_sphcov_aniso (param, x, y, i); dK2 = stk_sphcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_discretecov.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_discretecov.m ***** shared model, model2, x0 n0 = 20; n1 = 10; dim = 4; x0 = stk_sampling_randunif (n0, dim); x1 = stk_sampling_randunif (n1, dim); model = stk_model ('stk_materncov52_aniso', dim); model.lm = stk_lm_affine (); model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); ***** test % without noise, pairwise = false model.lognoisevariance = - inf; model2 = stk_model ('stk_discretecov', model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); ***** test % without noise, pairwise = true K1 = stk_make_matcov (model, x0([2 5 6], :), [], true); K2 = stk_make_matcov (model2, [2 5 6]', [], true); assert (stk_isequal_tolrel (K1, K2)); ***** test % with noise, pairwise = false model.lognoisevariance = log (0.01); model2 = stk_model ('stk_discretecov', model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov32_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_materncov32_aniso (); ***** error K0 = stk_materncov32_aniso (param); ***** error K0 = stk_materncov32_aniso (param, x); ***** test K1 = stk_materncov32_aniso (param, x, y); ***** test K2 = stk_materncov32_aniso (param, x, y, -1); ***** test K3 = stk_materncov32_aniso (param, x, y, -1, false); ***** error K0 = stk_materncov32_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_materncov32_aniso (param, u, v, -1); K2 = stk_materncov32_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_materncov32_aniso (param, x, y, -2); ***** test stk_materncov32_aniso (param, x, y, -1); ***** error stk_materncov32_aniso (param, x, y, 0); ***** test stk_materncov32_aniso (param, x, y, 1); ***** test stk_materncov32_aniso (param, x, y, 2); ***** error stk_materncov32_aniso (param, x, y, 3); ***** error stk_materncov32_aniso (param, x, y, nan); ***** error stk_materncov32_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov32_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov32_aniso (param, x, y, i); dK2 = stk_materncov32_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov32_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov32_iso (); ***** error stk_materncov32_iso (param); ***** error stk_materncov32_iso (param, x); ***** test stk_materncov32_iso (param, x, y); ***** test stk_materncov32_iso (param, x, y, -1); ***** test stk_materncov32_iso (param, x, y, -1, false); ***** error stk_materncov32_iso (param, x, y, -1, false, pi^2); ***** error stk_materncov32_iso (param, x, y, -2); ***** test stk_materncov32_iso (param, x, y, -1); ***** error stk_materncov32_iso (param, x, y, 0); ***** test stk_materncov32_iso (param, x, y, 1); ***** test stk_materncov32_iso (param, x, y, 2); ***** error stk_materncov32_iso (param, x, y, 3); ***** error stk_materncov32_iso (param, x, y, nan); ***** error stk_materncov32_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov32_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov32_iso (param, x, y, i); dK2 = stk_materncov32_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_expcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_expcov_iso (); ***** error stk_expcov_iso (param); ***** error stk_expcov_iso (param, x); ***** test stk_expcov_iso (param, x, y); ***** test stk_expcov_iso (param, x, y, -1); ***** test stk_expcov_iso (param, x, y, -1, false); ***** error stk_expcov_iso (param, x, y, -1, false, pi^2); ***** error stk_expcov_iso (param, x, y, -2); ***** test stk_expcov_iso (param, x, y, -1); ***** error stk_expcov_iso (param, x, y, 0); ***** test stk_expcov_iso (param, x, y, 1); ***** test stk_expcov_iso (param, x, y, 2); ***** error stk_expcov_iso (param, x, y, 3); ***** error stk_expcov_iso (param, x, y, nan); ***** error stk_expcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_expcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_expcov_iso (param, x, y, i); dK2 = stk_expcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_sphcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_sphcov_iso (); ***** error stk_sphcov_iso (param); ***** error stk_sphcov_iso (param, x); ***** test stk_sphcov_iso (param, x, y); ***** test stk_sphcov_iso (param, x, y, -1); ***** test stk_sphcov_iso (param, x, y, -1, false); ***** error stk_sphcov_iso (param, x, y, -1, false, pi^2); ***** error stk_sphcov_iso (param, x, y, -2); ***** test stk_sphcov_iso (param, x, y, -1); ***** error stk_sphcov_iso (param, x, y, 0); ***** test stk_sphcov_iso (param, x, y, 1); ***** test stk_sphcov_iso (param, x, y, 2); ***** error stk_sphcov_iso (param, x, y, 3); ***** error stk_sphcov_iso (param, x, y, nan); ***** error stk_sphcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_sphcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_sphcov_iso (param, x, y, i); dK2 = stk_sphcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.9]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error stk_materncov_iso(); ***** error stk_materncov_iso(param); ***** error stk_materncov_iso(param, x); ***** test stk_materncov_iso(param, x, y); ***** test stk_materncov_iso(param, x, y, -1); ***** test stk_materncov_iso(param, x, y, -1, false); ***** error stk_materncov_iso(param, x, y, -1, false, pi^2); ***** error stk_materncov_iso(param, x, y, -2); ***** test stk_materncov_iso(param, x, y, -1); ***** error stk_materncov_iso(param, x, y, 0); ***** test stk_materncov_iso(param, x, y, 1); ***** test stk_materncov_iso(param, x, y, 2); ***** test stk_materncov_iso(param, x, y, 3); ***** error stk_materncov_iso(param, x, y, 4); ***** error stk_materncov_iso(param, x, y, nan); ***** error stk_materncov_iso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov_iso (param, x, y); K2 = stk_materncov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:3, dK = stk_materncov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_iso(param, x, y); K2 = stk_materncov_iso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:3, dK1 = stk_materncov_iso(param, x, y, i); dK2 = stk_materncov_iso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 19 tests, 19 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov52_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov52_aniso (); ***** error stk_materncov52_aniso (param); ***** error stk_materncov52_aniso (param, x); ***** test stk_materncov52_aniso (param, x, y); ***** test stk_materncov52_aniso (param, x, y, -1); ***** test stk_materncov52_aniso (param, x, y, -1, false); ***** error stk_materncov52_aniso (param, x, y, -1, false, pi^2); ***** error stk_materncov52_aniso (param, x, y, -2); ***** test stk_materncov52_aniso (param, x, y, -1); ***** error stk_materncov52_aniso (param, x, y, 0); ***** test stk_materncov52_aniso (param, x, y, 1); ***** test stk_materncov52_aniso (param, x, y, 2); ***** error stk_materncov52_aniso (param, x, y, 3); ***** error stk_materncov52_aniso (param, x, y, nan); ***** error stk_materncov52_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov52_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso(param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov52_aniso (param, x, y, i); dK2 = stk_materncov52_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/misc/parallel/@stk_parallel_engine_parfor/stk_parallel_engine_parfor.m] >>>>> /build/octave-stk-2.5.1/inst/misc/parallel/@stk_parallel_engine_parfor/stk_parallel_engine_parfor.m ***** test if exist ('matlabpool') || exist ('parpool') stk_test_class ('stk_parallel_engine_parfor') end 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m] >>>>> /build/octave-stk-2.5.1/inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m ***** test stk_test_class ('stk_parallel_engine_none') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/test/stk_test.m] >>>>> /build/octave-stk-2.5.1/inst/misc/test/stk_test.m ***** assert(isempty([])) % support for test assert shorthand ***** assert((1 + 1) == 2) ***** test a=1; ***** test assert(~exist('a')); ***** shared a % create a shared variable ***** test a = 3; % assign to a shared variable ***** test assert(a == 3); % variable should equal 3 in this second 'test' block ***** shared b, c % replace shared variables {'a'} --> {'b', 'c'} ***** test assert(~exist('a')); % a no longer exists ***** test assert(isempty(b)); % variables start off empty ***** shared a % recreate a shared variable that had been deleted ***** test assert (isempty(a)); % it is empty, even though it was equal to 3 before ***** shared a, b, c % creates three shared variables a = 1; b = 2; c = 3; % give values to all variables, in the same block ***** assert(isequal([a, b, c], [1, 2, 3])); % test all of them together ***** test c=6; % update a value ***** test % show that the update sticks between blocks assert(isequal([a, b, c], [1, 2, 6])); ***** shared % clear all shared variables ***** assert(~exist('a')) % show that they are cleared ***** error test % not enough input arguments ***** error test(1, 2, 3, 4) % too many input args ***** error garbage % usage on nonexistent function should be ***** error stt_test('test', 'bogus'); % undefined function error ***** error stk_test('test', 'bogus'); % error raised by stk_test itself ***** error stk_test(); ***** error stk_test('disp', 'verbose', [], 'extra arg !!!'); ***** error stk_test([]) ***** error stk_test(0.0) ***** error stk_test('stk_mindist', 0.0) ***** error stk_test('stk_mindist', 'dudule') 24 tests, 24 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolabs.m] >>>>> /build/octave-stk-2.5.1/inst/misc/test/stk_isequal_tolabs.m ***** shared r1, r2, a, b, tolabs a = 1.01; b = 1.02; tolabs = 0.1; ***** error rr = stk_isequal_tolabs(); ***** error rr = stk_isequal_tolabs(a); ***** test r1 = stk_isequal_tolabs(a, b); ***** test r2 = stk_isequal_tolabs(a, b, tolabs); ***** error rr = stk_isequal_tolabs(a, b, tolabs, pi); ***** test assert(~r1); ***** test assert(r2); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolabs(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolabs(a, b, tolabs)) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolrel.m] >>>>> /build/octave-stk-2.5.1/inst/misc/test/stk_isequal_tolrel.m ***** shared r1, r2, r3, a, b, tolrel a = 1.01; b = 1.02; tolrel = 0.1; ***** error rr = stk_isequal_tolrel(); ***** error rr = stk_isequal_tolrel(a); ***** test r1 = stk_isequal_tolrel(a, b); ***** test r2 = stk_isequal_tolrel(a, b, tolrel); ***** test r3 = stk_isequal_tolrel(a, [b b]); ***** error rr = stk_isequal_tolrel(a, b, tolrel, pi); ***** test assert (isequal (r1, false)); ***** test assert (isequal (r2, true)); ***** test assert (isequal (r3, false)); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolrel(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolrel(a, b, tolrel)) 11 tests, 11 passed, 0 known failure, 0 skipped [inst/misc/design/stk_phipcrit.m] >>>>> /build/octave-stk-2.5.1/inst/misc/design/stk_phipcrit.m ***** shared x x = [0, 0.2, 0.4, 0.6, 0.8, 1.0; 0, 0.6, 0.8, 1.0, 0.2, 0.4]'; ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 10), 3.946317664423303, 1e-15)) ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 50), 3.614077252813102, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 100), 3.574589859827413, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 1e9), 1 / stk_mindist (x), 1e-8)); ***** assert (isequal (stk_phipcrit (ones (2)), Inf)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/design/stk_maxabscorr.m] >>>>> /build/octave-stk-2.5.1/inst/misc/design/stk_maxabscorr.m ***** assert (stk_isequal_tolabs (0.0, ... % Test on an OLHS(5) stk_maxabscorr ([0.4 0.8 0 -0.4 -0.8; -0.8 0.4 0 0.8 -0.4]'))); 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_filldist.m ***** test %%% exact d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist(x, box); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test %%% discretized d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist(x, y); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; % must be bigger than 2 for dim = 1:10, x = rand(n, dim); fd = stk_filldist(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test %%% exact for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test %%% discretized for dim = 1:6, x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test dim = 3; box = repmat([-1; 1], 1, dim); x = stk_sampling_randunif(20, dim, box); y = stk_sampling_regulargrid(3^dim, dim, box); fd1 = stk_filldist(x, box); fd2 = stk_filldist(x, y); assert(fd1 >= fd2 - 10 * eps); ***** test %%% exact for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end ***** test %%% discretized for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_discretized.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_filldist_discretized.m ***** error stk_filldist_discretized(0.0) % incorrect nb of arguments ***** error stk_filldist_discretized(0.0, 0.0, pi) % incorrect nb of arguments ***** error stk_filldist_discretized(0.0, []) % second arg is empty ***** error stk_filldist_discretized([], 0.0) % first arg is empty ***** test d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist_discretized(x, y); fd2 = stk_filldist_discretized(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; for dim = 1:10, x = rand(n, dim); fd = stk_filldist_discretized(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test for dim = 1:10, x = rand(1, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, norm(x - y))); end ***** test n = 4; for dim = 2:10, x = zeros(n, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, max(stk_dist(x, y)))); end ***** test for dim = [1 3 6], x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_dist.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_dist.m ***** error stk_dist(); ***** error stk_dist(0, 0, 0); ***** error stk_dist(0, 0, 0, 0); ***** error stk_dist(0, ones(1, 2)); ***** error stk_dist(eye(3), ones(1, 2)); ***** error stk_dist(ones(2, 1), zeros(2)); ***** shared x, y, z x = zeros(11, 5); y = zeros(13, 5); z = ones(7, 5); ***** test Dx = stk_dist(x); assert(isequal(Dx, zeros(11))); ***** test Dxx = stk_dist(x, x); assert(isequal(Dxx, zeros(11))); ***** test Dxy = stk_dist(x, y); assert(isequal(Dxy, zeros(11, 13))); ***** test Dzz = stk_dist(z, z); assert(isequal(Dzz, zeros(7))); ***** test Dxz = stk_dist(x, z); assert(stk_isequal_tolabs(Dxz, sqrt(5)*ones(11, 7))); ***** test x = randn(5,3); y = randn(5,3); D1 = stk_dist(x, y, true); % pairwise D2 = stk_dist(x, y); assert(stk_isequal_tolabs(D1, diag(D2))); ***** test x = randn(5,3); D1 = stk_dist(x, [], true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); D1 = stk_dist(x, x, true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); 13 tests, 13 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_mindist.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_mindist.m ***** test d = 3; x = rand(7, d); md1 = stk_mindist(x); md2 = stk_mindist(stk_dataframe(x)); assert(stk_isequal_tolabs(md1, md2)); ***** test for nc = [0 5 10], x = zeros(0, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nc = [0 5 10], x = rand(1, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nr = [2 5 10], x = zeros(nr, 0); d = stk_mindist(x); assert(isequal(d, 0.0)); end ***** test nrep = 20; TOL_REL = 1e-15; for irep = 1:nrep, n = 2 + floor(rand * 10); d = 1 + floor(rand * 10); x = rand(n, d); z = stk_mindist(x); assert(isequal(size(d), [1, 1])); assert(~isnan(d)); assert(~isinf(d)); % check the result mindist = Inf; for i = 1:(n-1), for j = (i+1):n, mindist = min(mindist, norm(x(i,:) - x(j,:))); end end assert(abs(z - mindist) <= TOL_REL * mindist); end 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_gpquadform.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_gpquadform.m ***** shared x, y, z, rx, ry, rz x = rand(5, 2); rx = rand(5, 2) + 1; y = rand(6, 2); ry = rand(6, 2) + 1; z = rand(5, 3); rz = rand(5, 3) + 1; ***** error Q = stk_gpquadform(x, ry, y, ry) ***** error Q = stk_gpquadform(x, rz, y, ry) ***** error Q = stk_gpquadform(x, rx, y, rx) ***** error Q = stk_gpquadform(x, rx, y, rz) ***** error Q = stk_gpquadform(x, rx, z, ry) ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 1/sqrt(2) * ones (11, 5); y = zeros (13, 5); ry = 1/sqrt(2) * ones (13, 5); z = ones ( 7, 5); rz = 1/sqrt(2) * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5 * ones(11, 7))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); y = randn(5, 3); ry = 1 + rand(5, 3); Q1 = stk_gpquadform(x, y, rx, ry, true); % pairwise Q2 = stk_gpquadform(x, y, rx, ry, false); assert(isequal(size(Q1), [5 1])); assert(isequal(size(Q2), [5 5])); assert(stk_isequal_tolabs(Q1, diag(Q2))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); Q1 = stk_gpquadform(x, [], rx, [], true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); Q1 = stk_gpquadform(x, x, rx, rx, true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 2 * ones (11, 5); y = zeros (13, 5); ry = 2 * ones (13, 5); z = ones ( 7, 5); rz = 2 * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5/8 * ones(11, 7))); 17 tests, 17 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_exact.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_filldist_exact.m ***** test d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist_exact(x, box); fd2 = stk_filldist_exact(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist_exact(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist_exact(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_sprintf_colvect.m ***** shared s ***** test s = stk_sprintf_colvect ([1 1e1], 6); ***** assert (isequal (s, [' 1'; '10'])) ***** test s = stk_sprintf_colvect ([1 1e3], 6); ***** assert (isequal (s, [' 1'; '1000'])) ***** test s = stk_sprintf_colvect ([1 1e5], 6); ***** assert (isequal (s, [' 1'; '100000'])) ***** test s = stk_sprintf_colvect ([1 1e6], 6); ***** assert (isequal (s, ['1e+00'; '1e+06'])) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/misc/text/stk_disp_progress.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_disp_progress.m ***** error stk_disp_progress ('toto ', 0, 1); ***** test stk_disp_progress ('toto ', 1, 1); warning: implicit conversion from numeric to char toto ***** error stk_disp_progress ('toto ', 2, 1); ***** test stk_disp_progress ('toto ', 1, 2); stk_disp_progress ('toto ', 2, 2); warning: implicit conversion from numeric to char toto toto 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_fixedpoint.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_sprintf_colvect_fixedpoint.m ***** shared x, s x = [1.2; 3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['1.2'; '3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** shared x, s x = [1.2; -3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, [' 1.2'; '-3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 6); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** shared x, s x = [0.2; 0.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['0.2'; '0.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['0.20'; '0.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['0.20'; '0.48'])) 32 tests, 32 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_scientific.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_sprintf_colvect_scientific.m ***** shared x, s x = [1.2; -34567]; ***** test s = stk_sprintf_colvect_scientific(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_scientific(x, 3); ***** assert (isequal(s, ['###'; '###'])) ***** test s = stk_sprintf_colvect_scientific(x, 5); ***** assert (isequal(s, ['#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific(x, 6); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 7); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 8); ***** assert (isequal(s, [' 1.2e+00'; '-3.5e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 9); ***** assert (isequal(s, [' 1.20e+00'; '-3.46e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 10); ***** assert (isequal(s, [' 1.200e+00'; '-3.457e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 11); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 12); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** shared x, s x = [0.9; 0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, ['9.0e-01'; '9.1e-01'; '9.9e-01'; '1.0e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, ['9.00e-01'; '9.10e-01'; '9.90e-01'; '9.99e-01'])) ***** shared x, s x = [0.9; -0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['#####'; '#####'; '#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, [' 9.0e-01'; '-9.1e-01'; ' 9.9e-01'; ' 1.0e+00'])) ***** test x = [1e6; -1e10; 1e-221]; s = stk_sprintf_colvect_scientific(x, 10); assert(isequal(s, [' 1e+006'; '-1e+010'; ' 1e-221'])); 41 tests, 41 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_baseclass/stk_optim_baseclass.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_baseclass/stk_optim_baseclass.m ***** test stk_test_class ('stk_optim_baseclass') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_unc.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_optim_testmin_unc.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_unc'); ***** error b = stk_optim_testmin_unc (); ***** error b = stk_optim_testmin_unc (algo, 33.51); ***** assert (stk_optim_testmin_unc (algo)); ***** assert (~ stk_optim_testmin_unc ('dudule')); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_boxconstrained.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_minimize_boxconstrained.m ***** test % Call fmincon using function name if stk_optim_isavailable ('fmincon') assert (stk_optim_testmin_box ('fmincon')); end ***** test % Call fmincon directly, using algorithm object if stk_optim_isavailable ('fmincon') algo = stk_optim_fmincon ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_box (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_box ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_box (algo)); end ***** error assert (stk_optim_testmin_box ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_box (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_box.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_optim_testmin_box.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_box'); ***** error b = stk_optim_testmin_box (); ***** error b = stk_optim_testmin_box (algo, 33.51); ***** assert (stk_optim_testmin_box (algo)); ***** assert (~ stk_optim_testmin_box ('dudule')); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m ***** test stk_test_class ('stk_optim_fmincon') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m ***** test stk_test_class ('stk_optim_fminsearch') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m ***** test stk_test_class ('stk_optim_octavesqp') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_unconstrained.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_minimize_unconstrained.m ***** test % Call fminsearch using function name if stk_optim_isavailable ('fminsearch') assert (stk_optim_testmin_unc ('fminsearch')); end ***** test % Call fminsearch directly, using algorithm object if stk_optim_isavailable ('fminsearch') algo = stk_optim_fminsearch ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_unc (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_unc ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_unc (algo)); end ***** error assert (stk_optim_testmin_unc ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_unc (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/error/stk_error.m] >>>>> /build/octave-stk-2.5.1/inst/misc/error/stk_error.m ***** shared errmsg, mnemonic, badstack errmsg = 'Go ahead, make my day.'; mnemonic = 'ClintEastwood'; badstack = 0; % not a valid stack structure ***** error stk_error(errmsg, mnemonic); ***** error stk_error (errmsg, mnemonic, badstack); ***** error id=STK:stk_error:InvalidArgument stk_error (errmsg, mnemonic, badstack); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_pdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_pdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_pdf ([1; 3], 1, [1 10]), ... [1 / sqrt(2 * pi) ... % normpdf ((1 - 1) / 1) 0.1 / sqrt(2 * pi); ... % normpdf ((1 - 1) / 10) / 10 exp(-2) / sqrt(2 * pi) ... % normpdf ((3 - 1) / 1) 3.910426939754558780e-2 ... % normpdf ((3 - 1) / 10) / 10 ], eps)); ***** assert (isequal (stk_distrib_normal_pdf (inf), 0.0)); ***** assert (isequal (stk_distrib_normal_pdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_pdf (nan))); ***** assert (isnan (stk_distrib_normal_pdf (0, 0, -1))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_pdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_student_pdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_pdf ([1; 3], [1; 2], [0 1], [1 10]), ... [0.50 / pi ... % tpdf ((1 - 1) / 10, 1) 0.10 / pi; ... % tpdf ((1 - 1) / 10, 1) / 10 1 / (11 * sqrt(11)) ... % tpdf ((3 - 0) / 1, 2) / 1 3.4320590294804165e-02 ... % tpdf ((3 - 1) / 10, 2) / 10 ], eps)); ***** assert (isequal (stk_distrib_student_pdf ( inf, 1.0), 0.0)); ***** assert (isequal (stk_distrib_student_pdf (-inf, 1.0), 0.0)); ***** assert (isnan (stk_distrib_student_pdf ( nan, 1.0))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_cdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_student_cdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_cdf ([-1; 0; 1], [1 2], 0, [1 10]), ... [0.25, ... % tcdf ((-1 - 0)/1, 1) 4.6473271920707004e-01; ... % tcdf ((-1 - 0)/10, 2) 0.50, ... % tcdf (( 0 - 0)/1, 1) 0.50; ... % tcdf (( 0 - 0)/10, 2) 0.75, ... % tcdf (( 1 - 0)/1, 1) 5.3526728079292996e-01 ... % tcdf (( 1 - 0)/10, 2) ], 4 * eps)) ***** test [p, q] = stk_distrib_student_cdf (1e10, 2); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 4.999999999999999999925e-21, 10 * eps)); ***** assert (isequal (stk_distrib_student_cdf (0.0, 1), 0.5)); ***** assert (isequal (stk_distrib_student_cdf (inf, 1), 1.0)); ***** assert (isequal (stk_distrib_student_cdf (-inf, 1), 0.0)); ***** assert (isnan (stk_distrib_student_cdf (nan, 1))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_ei.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_student_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_student_ei (0, 2), 1 / sqrt (2), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_student_ei (linspace (-10, 10, 200), 3.33); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei, nu M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); nu = 2; ei = stk_distrib_student_ei (M, nu, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_student_ei (M, nu, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_student_ei (-M, nu, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_cdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_cdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_cdf ([1; 3], 1, [1 10]), ... [0.5, ... % normcdf ((1 - 1) / 1) 0.5; ... % normcdf ((1 - 1) / 10) 0.5 * erfc(-sqrt(2)), ... % normcdf ((3 - 1) / 1) 0.5 * erfc(-0.1*sqrt(2)) ... % normcdf ((3 - 1) / 10) ], eps)); ***** test [p, q] = stk_distrib_normal_cdf (10); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 7.6198530241604975e-24, eps)); ***** assert (isequal (stk_distrib_normal_cdf ( 0.0), 0.5)); ***** assert (isequal (stk_distrib_normal_cdf ( inf), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_cdf ( nan))); ***** assert (isnan (stk_distrib_normal_cdf (0, 0, -1))); ***** assert (isequal (stk_distrib_normal_cdf (0, 0, 0), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (0, 1, 0), 0.0)); ***** assert (isequal (stk_distrib_normal_cdf (1, 0, 0), 1.0)); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_bivnorm_cdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_bivnorm_cdf.m ***** test z1 = [0 1; -1 2]; z2 = [0 1; 1 -2]; z = cat (3, z1, z2); % 2 x 2 x 2 mu1 = 0; % 1 x 1 x 1 mu2 = [0 1]; % 1 x 2 x 1 sigma1 = [1 3]; % 1 x 2 x 1 sigma2 = [1; 2]; % 2 x 1 x 1 rho = [0; 0.5]; % 2 x 1 x 1 %% BROADCASTING => the result will be a 2 x 2 matrix p = stk_distrib_bivnorm_cdf (z, mu1, mu2, sigma1, sigma2, rho); p11 = 0.25; % mvncdf ([ 0 0], [0 0], [1 0; 0 1]); p12 = 0.315279329909118; % mvncdf ([ 1 1], [0 1], [9 0; 0 1]); p21 = 0.146208349559646; % mvncdf ([-1 1], [0 0], [1 1; 1 4]); p22 = 0.064656239880040; % mvncdf ([ 2 -2], [0 1], [9 3; 3 4]); assert (stk_isequal_tolabs (p, [p11 p12; p21 p22], 1e-14)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -10], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 0], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 10], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-inf inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-10 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([0 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([10 inf], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test % A mixture of singular and non-singular cases p = stk_distrib_bivnorm_cdf ([0 0], 0, 0, [1; 0], 1, 0); assert (isequal (p, [0.25; 0.5])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_ei.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_ei (0.0), 1 / sqrt (2 * pi), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_normal_ei (linspace (-10, 10, 200)); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); ei = stk_distrib_normal_ei (M, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_normal_ei (M, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_normal_ei (-M, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_crps.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_crps.m ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 0.0), 0.0)) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 1.0), (sqrt(2) - 1)/sqrt(pi))) ***** shared n, x_obs, mu, sigma, crps, crps_exp x_obs = [ 1.78; -2.29; -1.62; -5.89; 2.88; 0.65; 2.74; -3.42]; % observations mu = [-0.31; -0.59; 1.48; -1.57; -0.05; -0.27; 1.05; 1.27]; % predictions sigma = [ 2.76; 6.80; 1.63; 1.19; 4.98; 9.60; 5.85; 2.24]; % standard dev n = size(x_obs, 1); crps = stk_distrib_normal_crps (x_obs, mu, sigma); ***** assert (isequal (size (crps), [n, 1])) ***** assert (all (crps >= 0)) ***** assert (stk_isequal_tolabs (crps, stk_distrib_normal_crps(mu, x_obs, sigma))) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (x_obs, mu, 0), abs (x_obs - mu))) crps_ref = [ ... 1.247856605928301 ... 1.757798727719891 ... 2.216236225997414 ... 3.648696666764968 ... 1.832355265287495 ... 2.278618297947438 ... 1.560544734359158 ... 3.455697443411153 ]; assert (stk_isequal_tolabs (crps, crps_ref, 1e-10)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_paretofind.m] >>>>> /build/octave-stk-2.5.1/inst/misc/pareto/stk_paretofind.m ***** shared x, ndpos, drank x = [ ... 0 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 1)); ***** assert (isequal (drank, [0; 1])); ***** shared x, ndpos, drank x = [ ... 3 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 2)); ***** assert (isequal (drank, [1; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3; ... -1 4; ... 2 2 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0; 1; 2])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_dominatedhv.m] >>>>> /build/octave-stk-2.5.1/inst/misc/pareto/stk_dominatedhv.m ***** error hv = stk_dominatedhv (); ***** error hv = stk_dominatedhv (-y, 'incorrect ref type'); ***** error hv = stk_dominatedhv (-y, [0 0]); ***** error hv = stk_dominatedhv (-y, [0 0 0 0 0], 0, 'too many input args'); ***** shared y, hv0 % Example from README.TXT in WFG 1.10 y = [ ... 0.598 0.737 0.131 0.916 6.745; ... 0.263 0.740 0.449 0.753 6.964; ... 0.109 8.483 0.199 0.302 8.872 ]; hv0 = 1.1452351120; ***** test hv = stk_dominatedhv (-y); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test yy = stk_dataframe (- y); % Check that @stk_dataframe inputs are accepted hv = stk_dominatedhv (yy); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [], 0); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [0 0 0 0 0]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (1 - y, [1 1 1 1 1]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test r = stk_dominatedhv (-y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** shared y1, y2, y0, S, S1 y0 = [1.00 1.00]; % Reference point y1 = [1.50 1.50]; % Above the reference point y2 = [0.50 0.50]; % Below the reference point ***** assert (isequal (0.00, stk_dominatedhv (y1, y0))); ***** assert (isequal (0.25, stk_dominatedhv (y2, y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y1; y2], y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y2; y1; y2], y0))); ***** test S = stk_dominatedhv (y1, y0, 1); % empty decomposition ***** assert (isequal (size (S.xmin, 1), 0)); ***** test S = stk_dominatedhv (y2, y0, 1); % trivial decomposition ***** assert (isequal (S.sign, 1)); ***** assert (isequal (S.xmin, y2)); ***** assert (isequal (S.xmax, y0)); ***** test S1 = stk_dominatedhv ([y2; y0], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y1], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y2], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test for d = 1:10, y = - 0.5 * ones (1, d); hv = stk_dominatedhv (y); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** test for d = 1:10, y = - 0.5 * ones (1, d); r = stk_dominatedhv (y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** shared y, y_ref, dv, hv0 y1 = [0.25 0.75]; y2 = [0.50 0.50]; y3 = [0.75 0.25]; y_ref = [1 1]; y = {[], y1, y2, y3; [y1; y2], [y1; y3], [y2; y3], [y1; y2; y3]}; dv = 0.25 ^ 2; hv0 = [0 3 4 3; 5 5 5 6] * dv; ***** test hv1 = stk_dominatedhv (y, y_ref); assert (isequal (hv0, hv1)); ***** test r = stk_dominatedhv (y, y_ref, 1); % Check the first decomposition, which should be empty assert (isempty (r(1).sign)); assert (isempty (r(1).xmin)); assert (isempty (r(1).xmax)); % Check the other decompositions for i = 2:6, hv2 = sum (r(i).sign .* prod (r(i).xmax - r(i).xmin, 2)); assert (isequal (hv0(i), hv2)); end ***** test y = (0.3:0.1:0.8)'; hv0 = 0.7; hv1 = stk_dominatedhv (y, 1); r = stk_dominatedhv (y, 1, true); hv2 = sum (r.sign .* prod (r.xmax - r.xmin, 2)); ***** test % four non-dominated points (hypervolume) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 HV = stk_dominatedhv (zi(P(i, :), :), zr, 0); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.20000 0.80000 0.40000 0.60000 0.60000 0.40000 0.80000 0.20000 ***** test % four non-dominated points (decomposition) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 S = stk_dominatedhv (zi(P(i, :), :), zr, 1); HV = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.20000 0.80000 0.40000 0.60000 0.60000 0.40000 0.80000 0.20000 ***** test % a case with 8 points and 5 objectives % http://sourceforge.net/p/kriging/tickets/33 yr = [1.03 0.91 0.96 1.99 16.2]; y = [ ... 0.8180 0.5600 0.1264 1.0755 1.2462; ... 0.8861 0.6928 0.2994 0.7228 0.9848; ... 0.9021 0.8829 0.6060 0.1642 0.4282; ... 0.9116 0.3097 0.8601 0.0468 0.2813; ... 0.9306 0.1429 0.6688 0.1462 1.3661; ... 0.9604 0.3406 0.4046 0.7239 1.8741; ... 0.9648 0.7764 0.5199 0.4098 1.3436; ... 0.9891 0.4518 0.7956 0.1164 1.2025]; hv1 = stk_dominatedhv (y, yr, 0); S = stk_dominatedhv (y, yr, 1); hv2 = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (isequal (size (S.sign), [87 1])); assert (isequal (size (S.xmin), [87 5])); assert (isequal (size (S.xmax), [87 5])); assert (stk_isequal_tolrel (hv1, 1.538677420906463, 2 * eps)); assert (stk_isequal_tolrel (hv1, hv2, eps)); ***** test % with random data NREP = 5; for p = 1:5 for n = 1:10 for i = 1:NREP % Draw random data y = rand (n, p); y = - y ./ (norm (y)); % Compute hypervolume directly hv1 = stk_dominatedhv (y, [], 0); % Compute decomposition, then hypervolume R = stk_dominatedhv (y, [], 1); hv2 = sum (R.sign .* prod (R.xmax - R.xmin, 2)); % Compare results assert (stk_isequal_tolabs (hv1, hv2, eps)); end end end 35 tests, 35 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_isdominated.m] >>>>> /build/octave-stk-2.5.1/inst/misc/pareto/stk_isdominated.m ***** test A = [1 3 2]; B = [0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 0); assert (dpos == 0); ***** test A = [1 3 2]; B = [0 0 0; 0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 2); ***** test A = [1 3 2; 1 0 1; -1 0 0; 1 3 2]; B = [1 0 0; 0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isequal (isdom, logical ([1; 1; 0; 1]))); assert (isequal (dpos, [3; 3; 0; 3])); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/utils/stk_conditioning.m] >>>>> /build/octave-stk-2.5.1/inst/utils/stk_conditioning.m ***** shared n, m, ni, xi_ind, lambda, zsim, zi n = 50; m = 5; ni = 10; xi_ind = 1:ni; lambda = 1/ni * ones (ni, n); % prediction == averaging zsim = ones (n, m); % const unconditioned samplepaths zi = zeros (ni, 1); % conditioning by zeros ***** error zsimc = stk_conditioning (); ***** error zsimc = stk_conditioning (lambda); ***** error zsimc = stk_conditioning (lambda, zi); ***** test zsimc = stk_conditioning (lambda, zi, zsim); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); ***** error zsimc = stk_conditioning (lambda, zi, zsim, xi_ind, pi^2); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), zeros (n, m))); ***** test zi = 2 * ones (ni, 1); % conditioning by twos zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), 2 * ones (n, m))); ***** test DIM = 1; nt = 400; xt = stk_sampling_regulargrid (nt, DIM, [-1.0; 1.0]); NI = 6; xi_ind = [1 20 90 200 300 350]; xi = xt(xi_ind, 1); zi = (1:NI)'; % linear response ;-) % Carry out the kriging prediction at points xt model = stk_model ('stk_materncov52_iso'); model.param = log ([1.0; 2.9]); [ignore_zp, lambda] = stk_predict (model, xi, [], xt); % Generate (unconditional) sample paths according to the model NB_PATHS = 10; zsim = stk_generate_samplepaths (model, xt, NB_PATHS); zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); 9 tests, 9 passed, 0 known failure, 0 skipped [inst/utils/stk_generate_samplepaths.m] >>>>> /build/octave-stk-2.5.1/inst/utils/stk_generate_samplepaths.m ***** shared model, xi, zi, xt, n, nb_paths dim = 1; n = 50; nb_paths = 5; model = stk_model ('stk_materncov32_iso', dim); model.param = log ([1.0; 2.9]); xt = stk_sampling_regulargrid (n, dim, [-1.0; 1.0]); xi = [xt(1, :); xt(end, :)]; zi = [0; 0]; ***** error zsim = stk_generate_samplepaths (); ***** error zsim = stk_generate_samplepaths (model); ***** test zsim = stk_generate_samplepaths (model, xt); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt, nb_paths); ***** error zsim = stk_generate_samplepaths (model, xi, zi, xt, nb_paths, log (2)); ***** test zsim = stk_generate_samplepaths (model, xt); assert (isequal (size (zsim), [n, 1])); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); assert (isequal (size (zsim), [n, nb_paths])); ***** test % duplicate simulation points zsim = stk_generate_samplepaths (model, [xt; xt], nb_paths); assert (isequal (size (zsim), [2 * n, nb_paths])); assert (isequal (zsim(1:n, :), zsim((n + 1):end, :))); ***** test % simulation points equal to observation points (noiseless model) % https://sourceforge.net/p/kriging/tickets/14/ zsim = stk_generate_samplepaths (model, xt, zeros (n, 1), xt); assert (isequal (zsim, zeros (n, 1))); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/stk_lm_cubic.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_cubic/stk_lm_cubic.m ***** test stk_test_class ('stk_lm_cubic') ***** error lm = stk_lm_cubic (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_cubic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_cubic (), x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/stk_lm_affine.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_affine/stk_lm_affine.m ***** test stk_test_class ('stk_lm_affine') ***** error lm = stk_lm_affine (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_affine/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_affine (), x); assert (isequal (size (P), [n, d + 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/stk_lm_null.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_null/stk_lm_null.m ***** test stk_test_class ('stk_lm_null') ***** error lm = stk_lm_null (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_null/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_null (), x); assert (isequal (size (P), [n, 0])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/stk_lm_polynomial.m] >>>>> /build/octave-stk-2.5.1/inst/lm/stk_lm_polynomial.m ***** error lm = stk_lm_polynomial (); ***** error lm = stk_lm_polynomial (0, 3.33); ***** test lm = stk_lm_polynomial (-1); assert (isa (lm, 'stk_lm_null')); ***** test lm = stk_lm_polynomial (0); assert (isa (lm, 'stk_lm_constant')); ***** test lm = stk_lm_polynomial (1); assert (isa (lm, 'stk_lm_affine')); ***** test lm = stk_lm_polynomial (2); assert (isa (lm, 'stk_lm_quadratic')); ***** test lm = stk_lm_polynomial (3); assert (isa (lm, 'stk_lm_cubic')); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m ***** test stk_test_class ('stk_lm_quadratic') ***** error lm = stk_lm_quadratic (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_quadratic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_quadratic (), x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_matrix/stk_lm_matrix.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_matrix/stk_lm_matrix.m ***** test stk_test_class ('stk_lm_matrix') ***** error lm = stk_lm_matrix ([], 3.33); ***** test %%% dim 1 data = rand (10, 1); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); ***** test %%% dim 3 data = rand (10, 3); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_constant/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_constant (), x); assert (isequal (size (P), [n, 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/stk_lm_constant.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_constant/stk_lm_constant.m ***** test stk_test_class ('stk_lm_constant') ***** error lm = stk_lm_constant (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_regulargrid.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_regulargrid.m ***** shared x, n, dim, box n = 9; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_regulargrid (); ***** test x = stk_sampling_regulargrid (n); ***** test x = stk_sampling_regulargrid (n, dim); ***** test x = stk_sampling_regulargrid (n, dim, box); ***** error x = stk_sampling_regulargrid (n, dim, box, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isa (x, 'stk_factorialdesign')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_regulargrid (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:3, n = 3^dim; x = stk_sampling_regulargrid(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end ***** test nn = [3 4 5]; for dim = 1:3, x = stk_sampling_regulargrid(nn(1:dim), dim); assert(isequal(size(x), [prod(nn(1:dim)) dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 11 tests, 11 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m ***** shared F, M, AKG M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_akg () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | reference_grid: -- (use current evaluation points) | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (isempty (F.reference_grid)) ***** assert (isempty (get (F, 'reference_grid'))) ***** error F.toto ***** error get (F, 'toto') ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error AKG = feval (F, 1.0); ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); ***** test F = stk_sampcrit_akg (); F = set (F, 'model', M); assert (isequal (F.model, M)); assert (isequal (size (F.zr_mean), [3 1])) % n x 1 assert (isequal (size (F.zr_std), [3 1])) % n x 1 assert (isequal (size (F.zr_lambdamu), [4 3])) % (n+1) x n (constant mean) ***** test F.model = []; % remove model assert (isempty (F.model)); assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) ***** test xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) F = | | model: -- (not instantiated) | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 assert (isequal (size (F.zr_std), [5 1])) % nr x 1 assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) F = | | model: | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (M) % ending ";" omitted on purpose, to test disp F = | | model: | reference_grid: -- (use current evaluation points) | ***** assert (isequal (F.model, M)) ***** test AKG = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (AKG), [3 1])) ***** assert (all (AKG >= 0)) ***** test [AKG2, zp] = feval (F, [1.0; 1.1; 1.2]); assert (isequal (AKG2, AKG)); assert (isa (zp, 'stk_dataframe') && isequal (size (zp), [3 2])) ***** shared F, xr xr = [1 1.5 2 2.5 3]'; ***** test F = stk_sampcrit_akg (stk_model ()); ***** assert (isempty (F.reference_grid)) ***** test F.reference_grid = xr; ***** assert (isequal (F.reference_grid, xr)) ***** assert (isempty (F.zr_mean)) ***** assert (isempty (F.zr_std)) ***** assert (isempty (F.zr_lambdamu)) ***** error AKG = feval (F, 1.0); ***** shared F, M, xr xr = [1 1.5 2 2.5 3]'; M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_akg (M, xr); ***** assert (isequal (F.model, M)) ***** assert (isequal (F.reference_grid, xr)) ***** assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_std), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) ***** error F = stk_sampcrit_akg (M, xr, 1.234); % too many input arguments 38 tests, 38 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m ***** error F = stk_sampcrit_eqi ([], 0.5, 10, 1.234); % too many input arguments ***** shared F, M, EQI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_eqi () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.quantile_order == 0.5) ***** assert (get (F, 'quantile_order') == 0.5) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** test F = set (F, 'quantile_order', 0.8); assert (F.quantile_order == 0.8) ***** error F.quantile_order = 1.1; ***** error F.quantile_order = -0.1; ***** error F.quantile_order = [1 2]; ***** error F.current_minimum = 3.333; % read-only ***** error F.quantile_value = 2.222; % read-only ***** error EQI = feval (F, 1.0); ***** test F = stk_sampcrit_eqi (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_eqi (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_eqi (M) % ending ";" omitted on purpose, to test disp F = | | model: | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 1.234, 10 * eps)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_eqi (M); ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 2.077997, 1e-5)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F ***** test F = stk_sampcrit_eqi (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); ***** shared F, M M = stk_model_gpposterior (stk_model (), [1 2 3]', [1.234 3 2]'); ***** error F = stk_sampcrit_eqi (M, [], 0); ***** error F = stk_sampcrit_eqi (M, [], 1.5); ***** error F = stk_sampcrit_eqi (M, [], nan); ***** error F = stk_sampcrit_eqi (M, [], [10 20]); ***** test F = stk_sampcrit_eqi (M, [], 10); ***** assert (isequal (F.quantile_order, 0.5)); ***** assert (isequal (F.point_batch_size, 10)); ***** error F = stk_sampcrit_eqi (M, 0.8, 0); ***** error F = stk_sampcrit_eqi (M, 0.8, 1.5); ***** error F = stk_sampcrit_eqi (M, 0.8, nan); ***** error F = stk_sampcrit_eqi (M, 0.8, [10 20]); ***** test F = stk_sampcrit_eqi (M, 0.8, 5); ***** assert (isequal (F.quantile_order, 0.8)); ***** assert (isequal (F.point_batch_size, 5)); ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); F = stk_sampcrit_eqi (M); ***** test F.point_batch_size = 10; % numeric ***** assert (isequal (F.point_batch_size, 10)) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = @(x, n) 100 - n; % function handle ***** assert (isa (F.point_batch_size, 'function_handle')) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = 'sin'; % char ***** assert (isa (F.point_batch_size, 'function_handle')) 64 tests, 64 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nesteddesign.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_nesteddesign.m ***** shared x, n, dim, box, niter, levels n = [23; 14; 5; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nesteddesign (); ***** test x = stk_sampling_nesteddesign (n); ***** test x = stk_sampling_nesteddesign (n, dim); ***** test x = stk_sampling_nesteddesign (n, dim, box); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter, levels); ***** error x = stk_sampling_nesteddesign (n, dim, box, niter, levels, pi); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end if lev == length(n) assert (stk_is_lhs (y, n(lev), dim, box)); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nesteddesign (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randomlhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_randomlhs.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_randomlhs (); ***** test x = stk_sampling_randomlhs (n); ***** test x = stk_sampling_randomlhs (n, dim); ***** test x = stk_sampling_randomlhs (n, dim, box); ***** error x = stk_sampling_randomlhs (n, dim, box, pi); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randomlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); assert(stk_is_lhs(x, n, dim)); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m ***** error F = stk_sampcrit_ei ([], 1.234); % too many input arguments ***** shared F, M, EI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_ei () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error EI = feval (F, 1.0); ***** test F = stk_sampcrit_ei (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_ei (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_ei (M) % ending ";" omitted on purpose, to test disp F = | | model: | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (F.current_minimum == 1.234); ***** test EI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EI), [3 1])) ***** assert (all (EI >= 0)) ***** shared F ***** test F = stk_sampcrit_ei (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); 25 tests, 25 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_akg_eval.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampcrit_akg_eval.m ***** shared zc_mean, zc_std, zr_mean, zr_std, zcr_cov, AKG, nc xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1] - 10; ni = 4; M_prior = stk_model('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_prior.lognoisevariance = 0.678; nc = 20; xc = stk_sampling_regulargrid (nc, 1, [0; 1]); [zp, ignd1, ignd2, K] = stk_predict (M_prior, xi, zi, [xi; xc]); % See CG#07 ir = 1:ni; ic = ni + (1:nc); zc_mean = zp.mean(ic); zc_std = sqrt (zp.var(ic)); % reference grid: current evaluation points ("KGCP") zr_mean = zp.mean(ir); zr_std = sqrt (zp.var(ir)); zcr_cov = K(ic, ir); ***** test AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std, zcr_cov); ***** assert (isequal (size (AKG), [nc 1])) ***** assert (all (AKG >= 0)) ***** error AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std); ***** error AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std, zcr_cov, 1.234); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_vdc_rr2.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_vdc_rr2.m ***** error __stk_sampling_vdc_rr2__() % two inputs required ***** error __stk_sampling_vdc_rr2__(10) % two inputs required ***** error __stk_sampling_vdc_rr2__(10, 3, -1) % two inputs required ***** test n = 300; j = 25; x = __stk_sampling_vdc_rr2__(n, j); assert(isequal(size(x), [n 1])) ***** test x = __stk_sampling_vdc_rr2__(2000, 7); y = double (x(1998:2000, :)); yref = [0.849786281294525; 0.085080398941584; 0.555668634235701]; assert(stk_isequal_tolrel(y, yref, 1e-13)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ei_eval.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampcrit_ei_eval.m ***** error EI = stk_sampcrit_ei_eval () % not enough args ***** error EI = stk_sampcrit_ei_eval (0) % not enough args ***** error EI = stk_sampcrit_ei_eval (0, 0, 0, 0, 0) % too many args ***** shared xi, zi, M_prior, xt, zp, EIref, EI1, EI2, EI3 xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1]; M_prior = stk_model('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); xt = stk_sampling_regulargrid (20, 1, [0; 1]); zp = stk_predict (M_prior, xi, zi, xt); EIref = stk_distrib_normal_ei (min (zi), zp.mean, sqrt (zp.var), true); ***** test % Current syntax (STK 2.4.1 and later) EI1 = stk_sampcrit_ei_eval (zp.mean, sqrt (zp.var), min (zi)); ***** assert (isequal (EI1, EIref)) 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_olhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_olhs.m ***** shared x, n, d, box, permut n = 5; d = 2; box = [0 0; 1, 1]; permut = 1:2; ***** error x = stk_sampling_olhs(); ***** test x = stk_sampling_olhs(n); ***** test x = stk_sampling_olhs(n, d); ***** test x = stk_sampling_olhs(n, d, box); ***** test x = stk_sampling_olhs(n, d, box, permut); ***** error x = stk_sampling_olhs(n, d, box, permut, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_olhs (n, d, box); assert (isequal (x.colnames, cn)); ***** test for r = 1:5 n = 2 ^ (r + 1) + 1; d = 2 * r; x = stk_sampling_olhs (n, d); assert (isequal (size (x), [n d])); box = repmat ([-1; 1], 1, d); assert (stk_is_lhs (x, n, d, box)); x = double (x); w = x' * x; assert (stk_isequal_tolabs (w / w(1,1), eye (d))); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/sampling/@stk_function/stk_function.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_function/stk_function.m ***** shared F ***** test F = stk_function () % ending ";" omitted on purpose, to test disp F = ***** error F = stk_function (1.234) % too many input arguments ***** error [F F]; % arrays of sampling criterion objects are not supported ***** error [F; F]; % idem ***** error get (F, 'toto'); % field does not exist ***** error y = feval (F, 1.0); % not implemented for "pure" function objects ***** error dummy = F{2}; % illegal indexing ***** error dummy = F(1.0); % feval not implemented ***** error dummy = F.toto; % field does not exist ***** error F{2} = 1.234; % illegal indexing ***** error F(5) = 1.234; % illegal indexing ***** error F.toto = 1.234; % field does not exist 12 tests, 12 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ehvi_eval.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampcrit_ehvi_eval.m ***** shared zr, zi zr = [1 1]; zi = [0.25 0.75; 0.5 0.5; 0.75 0.25]; ***** test % no improvement (1 computation) zp_mean = [0.6 0.6]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 0, 1e-12)); ***** test % guaranteed improvement (1 computation) zp_mean = [0 0]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 10 * 0.25 ^ 2)); ***** test % no improvement again (2 computations) zp_mean = [0.5 0.5; 0.6 0.6]; zp_std = [0 0; 0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, [0; 0], 1e-12)); ***** test % no observation -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = []; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); ***** test % no observation below zr -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = [2 2]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nestedlhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_nestedlhs.m ***** shared x, n, dim, box, niter, levels n = [48; 12; 4; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nestedlhs (); ***** test x = stk_sampling_nestedlhs (n); ***** test x = stk_sampling_nestedlhs (n, dim); ***** test x = stk_sampling_nestedlhs (n, dim, box); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter, levels); ***** error x = stk_sampling_nestedlhs (n, dim, box, niter, levels, pi); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); assert (stk_is_lhs (y, n(lev), dim, box)); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nestedlhs (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_halton_rr2.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_halton_rr2.m ***** error stk_sampling_halton_rr2 () % nargin < 1 ***** error stk_sampling_halton_rr2 (10, 3, [], -1) % nargin > 3 ***** test n = 300; d = 25; x = stk_sampling_halton_rr2 (n, d); assert (isequal (size (x), [n d])) ***** test x = stk_sampling_halton_rr2 (1000, 3); y = double (x(end, :)); yref = [0.9052734375 0.028349336991312 0.74848]; assert (stk_isequal_tolrel (y, yref, 1e-13)); ***** test dim = 2; box = stk_hrect (dim); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, {})); ***** test dim = 2; cn = {'W', 'H'}; box = stk_hrect (dim, cn); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, cn)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/sampling/stk_halfpintl.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_halfpintl.m ***** test % case #1 a = 1; b = 1; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 1) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #2: two lines, slopes not equal, already sorted a = [1; -1]; b = [0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #3: same as #2, but not sorted a = [-1; 1]; b = [ 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #4: two lines, equal slopes, already sorted a = [0; 0]; b = [1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #5: same as #4, but not sorted a = [0; 0]; b = [2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #6: add a dominated line to #2 (the result does not change) a = [1; -1; 0]; b = [0; 2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #7: permutation of #6 a = [1; 0; -1]; b = [0; 1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #8: another permutation of #6 a = [0; 1; -1]; b = [1; 0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #9: same as #8, with some duplicated lines added a = [0; 1; 0; -1; 0; -1; 1]; b = [1; 0; 1; 2; 1; 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_maximinlhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_maximinlhs.m ***** shared x, n, dim, box, niter n = 20; dim = 2; box = [0, 0; 1, 1]; niter = 1; ***** error x = stk_sampling_maximinlhs (); ***** test x = stk_sampling_maximinlhs (n); ***** test x = stk_sampling_maximinlhs (n, dim); ***** test x = stk_sampling_maximinlhs (n, dim, box); ***** test x = stk_sampling_maximinlhs (n, dim, box, niter); ***** error x = stk_sampling_maximinlhs (n, dim, box, niter, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_maximinlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs (n, dim); assert (isequal (size (x), [n dim])); u = double (x); u = u(:); assert (~ any (isnan (u) | isinf (u))); assert ((min (u) >= 0) && (max (u) <= 1)); assert (stk_is_lhs (x, n, dim)); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randunif.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_randunif.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 2, 2]; ***** error x = stk_sampling_randunif (); ***** test x = stk_sampling_randunif (n); ***** test x = stk_sampling_randunif (n, dim); ***** test x = stk_sampling_randunif (n, dim, box); ***** error x = stk_sampling_randunif (n, dim, box, pi); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randunif (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randunif(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_estim.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_estim.m ***** shared f, xi, zi, NI, param0, param1, model f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x)) ); DIM = 1; NI = 20; box = [-1.0; 1.0]; xi = stk_sampling_regulargrid (NI, DIM, box); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter param0 = log ([SIGMA2; NU; 1/RHO1]); model = stk_model ('stk_materncov_iso'); ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); assert (isequal (size (param1), size (param0))) ***** test % same thing, with empty lnv0 (ok) param2 = stk_param_estim (model, xi, zi, param0, []); assert (stk_isequal_tolrel (param2, param1, 1e-2)) ***** error % same thing, with lnv0 == NaN (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, nan); ***** error % same thing, with lnv0 == -inf (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, -inf); ***** test % same thing, with explicit value for 'criterion' param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); assert (stk_isequal_tolrel (param1, param2, 1e-2)) ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); % We cannot assume a DETERMINISTIC optimization algorithm % (for some reason, Octave's sqp is not exactly deterministic) assert (stk_isequal_tolrel (param1, param2, 1e-2)) ***** test % noisy NOISE_STD_TRUE = 0.1; NOISE_STD_INIT = 1e-5; zi = zi + NOISE_STD_TRUE * randn(NI, 1); model.lognoisevariance = 2 * log(NOISE_STD_INIT); [param, lnv] = stk_param_estim ... (model, xi, zi, param0, model.lognoisevariance); ***** error param = stk_param_estim () ***** error param = stk_param_estim (model); ***** error param = stk_param_estim (model, xi); ***** error param = stk_param_estim (model, xi, zi, param0, log(eps), @stk_param_relik, pi); ***** test % Constant response model = stk_model ('stk_materncov52_iso'); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); param = stk_param_estim (model, x, z, model.param); assert ((all (isfinite (param))) && (length (param) == 2)); warning: Constant-response data: the output of stk_param_estim is likely to be unreliable. warning: param0 has nans, calling stk_param_init instead warning: Parameter estimation is impossible with constant-response data. 12 tests, 12 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_init.m ***** test xi = (1:10)'; zi = sin (xi); model = stk_model ('stk_materncov52_iso'); model.param = stk_param_init (model, xi, zi, [1; 10], false); xt = (1:9)' + 0.5; zt = sin (xt); zp = stk_predict (model, xi, zi, xt); assert (sum ((zt - zp.mean) .^ 2) < 1e-3); ***** test % check equivariance of parameter estimates f = @(x) sin (x); xi = stk_sampling_regulargrid (10, 1); zi = stk_feval (f, xi); shift = 1000; scale = 0.01; model = stk_model ('stk_materncov32_iso'); p1 = stk_param_init (model, xi, zi); p2 = stk_param_init (model, xi, shift + scale .* zi); assert (stk_isequal_tolabs (p2(1), p1(1) + log (scale^2), 1e-10)) assert (stk_isequal_tolabs (p2(2), p1(2), eps)) ***** shared xi, zi, BOX, xt, zt f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); DIM = 1; % Dimension of the factor space BOX = [-1.0; 1.0]; % Factor space xi = stk_sampling_regulargrid (20, DIM, BOX); % Evaluation points zi = stk_feval (f, xi); % Evaluation results NT = 400; % Number of points in the grid xt = stk_sampling_regulargrid (NT, DIM, BOX); % Generate a regular grid zt = stk_feval (f, xt); % Values of f on the grid ***** xtest % This test is known to fail in Debian buster i386 % because of a known problem in Octave's sqp/qp functions % http://savannah.gnu.org/bugs/?38875 model = stk_model ('stk_materncov_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov32_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov32_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov52_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov52_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_gausscov_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 6.3619e-19 ***** test model = stk_model ('stk_gausscov_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 2.11204e-18 ***** test % Homoscedastic case / do_estim_lnv = true model = stk_model ('stk_materncov32_iso'); [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, true); [model.param, model.lognoisevariance] = ... stk_param_estim (model, xi, zi); zp = stk_predict (model, xi, zi, xt); assert (model.lognoisevariance > -inf); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** error % Homoscedastic case / do_estim_lnv = false / model.lnv = nan model = stk_model ('stk_materncov32_iso'); model.lognoisevariance = nan; % not compatible with do_estim_lnv == false [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, false); ***** error % Heteroscedastic case / do_estim_lnv = true model = stk_model ('stk_materncov32_iso'); lnv = log ((100 + rand (size (zi))) / 1e6); model.lognoisevariance = lnv; % here we say that lnv is known [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX, true); ***** test % Heteroscedastic case / known noise variance model = stk_model ('stk_materncov32_iso'); lnv = log ((100 + rand (size (zi))) / 1e6); model.lognoisevariance = lnv; % here we say that lnv is known [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (isequal (model.lognoisevariance, lnv)); % should be untouched assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** shared model, x, z model = stk_model ('stk_materncov52_iso'); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); ***** test % Constant response, noiseless model [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isequal (lnv, -inf)); warning: Parameter estimation is impossible with constant-response data. ***** test % Constant response, noisy model model.lognoisevariance = nan; [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isscalar (lnv) && isfinite (lnv)); warning: Parameter estimation is impossible with constant-response data. 16 tests, 16 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_gls.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_gls.m ***** shared xi, zi, model, beta, sigma2 xi = (1:10)'; zi = sin (xi); model = stk_model ('stk_materncov52_iso'); model.param = [0.0 0.0]; ***** test model.lm = stk_lm_constant (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, 0.1346064, 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4295288, 1e-6)) ***** test model.lm = stk_lm_affine (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, [0.4728342; -0.0614960], 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4559431, 1e-6)) ***** test model.lm = stk_lm_null (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (isequal (beta, zeros (0, 1))) ***** assert (stk_isequal_tolabs (sigma2, 0.3977993, 1e-6)) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init_lnv.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_init_lnv.m ***** test f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); ni = 20; xi = (linspace (-1, 1, ni))' + 0.2 * (randn (ni, 1)); zi = stk_feval (f, xi); model = stk_model ('stk_materncov_iso'); model.param = log ([1; 5/2; 1/0.4]); lnv = stk_param_init_lnv (model, xi, zi); assert ((isscalar (lnv)) && (lnv > -30) && (lnv < 30)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_relik.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_relik.m ***** shared f, xi, zi, NI, model, J, dJ1, dJ2 f = @(x)(- (0.8 * x(:, 1) + sin (5 * x(:, 2) + 1) ... + 0.1 * sin (10 * x(:, 3)))); DIM = 3; NI = 20; box = repmat ([-1.0; 1.0], 1, DIM); xi = stk_sampling_halton_rr2 (NI, DIM, box); zi = stk_feval (f, xi); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter model = stk_model('stk_materncov_aniso'); model.param = log([SIGMA2; NU; 1/RHO1 * ones(DIM, 1)]); ***** error [J, dJ1, dJ2] = stk_param_relik (); ***** error [J, dJ1, dJ2] = stk_param_relik (model); ***** error [J, dJ1, dJ2] = stk_param_relik (model, xi); ***** test [J, dJ1, dJ2] = stk_param_relik (model, xi, zi); ***** error [J, dJ1, dJ2] = stk_param_relik (model, xi, zi, pi); ***** test TOL_REL = 0.01; assert (stk_isequal_tolrel (J, 21.6, TOL_REL)); assert (stk_isequal_tolrel (dJ1, [4.387 -0.1803 0.7917 0.1392 2.580]', TOL_REL)); assert (isnan (dJ2)); ***** shared xi, zi, model, TOL_REL xi = [-1 -.6 -.2 .2 .6 1]'; zi = [-0.11 1.30 0.23 -1.14 0.36 -0.37]'; model = stk_model ('stk_materncov_iso'); model.param = log ([1.0 4.0 2.5]); model.lognoisevariance = log (0.01); TOL_REL = 0.01; ***** test % Another simple 1D check [ARL, dARL_dtheta, dARL_dLNV] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (ARL, 6.327, TOL_REL)); assert (stk_isequal_tolrel (dARL_dtheta, [0.268 0.0149 -0.636]', TOL_REL)); assert (stk_isequal_tolrel (dARL_dLNV, -1.581e-04, TOL_REL)); ***** test % Same 1D test with simple kriging model.lm = stk_lm_null; [ARL, dARL_dtheta, dARL_dLNV] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (ARL, 7.475, TOL_REL)); assert (stk_isequal_tolrel (dARL_dtheta, [0.765 0.0238 -1.019]', TOL_REL)); assert (stk_isequal_tolrel (dARL_dLNV, 3.0517e-03, TOL_REL)); ***** test % Check the gradient on a 2D test case f = @stk_testfun_braninhoo; DIM = 2; BOX = [[-5; 10], [0; 15]]; NI = 20; TOL_REL = 1e-2; DELTA = 1e-6; model = stk_model ('stk_materncov52_iso', DIM); xi = stk_sampling_halton_rr2 (NI, DIM, BOX); zi = stk_feval (f, xi); model.param = [1 1]; [r1 dr] = stk_param_relik (model, xi, zi); model.param = model.param + DELTA * [0 1]; r2 = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (dr(2), (r2 - r1) / DELTA, TOL_REL)); 9 tests, 9 passed, 0 known failure, 0 skipped [inst/core/stk_model.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_model.m ***** test model = stk_model(); ***** test model = stk_model('stk_expcov_iso'); ***** test model = stk_model('stk_expcov_iso', 1); ***** test model = stk_model('stk_expcov_iso', 3); ***** test model = stk_model('stk_expcov_aniso'); ***** test model = stk_model('stk_expcov_aniso', 1); ***** test model = stk_model('stk_expcov_aniso', 3); ***** test model = stk_model('stk_materncov_iso'); ***** test model = stk_model('stk_materncov_iso', 1); ***** test model = stk_model('stk_materncov_iso', 3); ***** test model = stk_model('stk_materncov_aniso'); ***** test model = stk_model('stk_materncov_aniso', 1); ***** test model = stk_model('stk_materncov_aniso', 3); ***** test model = stk_model('stk_materncov32_iso'); ***** test model = stk_model('stk_materncov32_iso', 1); ***** test model = stk_model('stk_materncov32_iso', 3); ***** test model = stk_model('stk_materncov32_aniso'); ***** test model = stk_model('stk_materncov32_aniso', 1); ***** test model = stk_model('stk_materncov32_aniso', 3); ***** test model = stk_model('stk_materncov52_iso'); ***** test model = stk_model('stk_materncov52_iso', 1); ***** test model = stk_model('stk_materncov52_iso', 3); ***** test model = stk_model('stk_materncov52_aniso'); ***** test model = stk_model('stk_materncov52_aniso', 1); ***** test model = stk_model('stk_materncov52_aniso', 3); ***** test model = stk_model('stk_gausscov_iso'); ***** test model = stk_model('stk_gausscov_iso', 1); ***** test model = stk_model('stk_gausscov_iso', 3); ***** test model = stk_model('stk_gausscov_aniso'); ***** test model = stk_model('stk_gausscov_aniso', 1); ***** test model = stk_model('stk_gausscov_aniso', 3); ***** test model = stk_model('stk_sphcov_iso'); ***** test model = stk_model('stk_sphcov_iso', 1); ***** test model = stk_model('stk_sphcov_iso', 3); ***** test model = stk_model('stk_sphcov_aniso'); ***** test model = stk_model('stk_sphcov_aniso', 1); ***** test model = stk_model('stk_sphcov_aniso', 3); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/core/@stk_kreq_qr/stk_kreq_qr.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_kreq_qr/stk_kreq_qr.m ***** test stk_test_class ('stk_kreq_qr') 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/@stk_kreq_qr/stk_update.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_kreq_qr/stk_update.m ***** shared model, x, y model = stk_model ('stk_materncov32_iso', 1); model.param = log ([1.0; 2.8]); x = [1.2; 0.3; -1.9]; y = 0.0; ***** test kreqA = stk_kreq_qr (model, x); [Kii, Pi] = stk_make_matcov (model, x); kreqB = stk_kreq_qr (model, x(1)); kreqB = stk_update (kreqB, Kii(2, 2), Kii(2, 1), Pi(2)); kreqB = stk_update (kreqB, Kii(3, 3), Kii(3, [1 2]), Pi(3)); assert (stk_isequal_tolabs (kreqA, kreqB, 3 * eps)) ***** test kreqA = stk_kreq_qr (model, x, y); [Kii, Pi] = stk_make_matcov (model, x); [Kti, Pt] = stk_make_matcov (model, y, x); kreqB = stk_kreq_qr (model, x(1), y); kreqB = stk_update (kreqB, Kii(2, 2), Kii(2, 1), Pi(2), Kti(2)); kreqB = stk_update (kreqB, Kii(3, 3), Kii(3, [1 2]), Pi(3), Kti(3)); assert (stk_isequal_tolabs (kreqA, kreqB, 3 * eps)) 2 tests, 2 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/get.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/get.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/set.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/set.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_model_update.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_model_update.m ***** shared x_obs, z_obs, ref, M_prior, x_new, z_new, lnv_new [x_obs, z_obs, ref] = stk_dataset_twobumps ('noisy2'); M_prior = stk_model ('stk_materncov52_iso'); M_prior.param = [-0.15; 0.38]; M_prior.lognoisevariance = 2 * log (ref.noise_std); x_new = [-0.79; -0.79]; z_new = [-0.69; -0.85]; lnv_new = ref.noise_std_func (x_new); ***** test % heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); ***** error % using lnv_new / homoscedastic M_prior.lognoisevariance = 0; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK ***** error % using lnv_new / noiseless M_prior.lognoisevariance = -inf; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs) M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK M_post = | | prior_model: <1x1 struct array> | input_data: <80x1 stk_dataframe array> | output_data: <80x1 stk_dataframe array> | with .prior_model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = -0.15000 0.38000 lognoisevariance = -Inf ***** error % not using lnv_new / heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_model_gpposterior.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_model_gpposterior.m ***** test stk_test_class ('stk_model_gpposterior') ***** shared M_prior, x_obs, z_obs x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); ***** test M_post = stk_model_gpposterior (); ***** test M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs]); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs], 3.441); ***** test % hidden feature kreq = stk_kreq_qr (M_prior, x_obs); M_post = stk_model_gpposterior (M_prior, {x_obs, kreq}, z_obs); ***** test % NaNs in prior_model.param DIM = 1; M = stk_model (@stk_materncov52_aniso, DIM); M.param = nan (2, 1); % this is currently the default x = stk_sampling_regulargrid (20, DIM, [0; 1]); y = sin (double (x)); zp = stk_predict (M, x, y, x); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_predict_leaveoneout.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_predict_leaveoneout.m ***** test % Check virtual Leave-One-Out formula n = 20; d = 1; x_obs = stk_sampling_regulargrid (n, d, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); lm_list = {stk_lm_null, stk_lm_constant, stk_lm_affine}; for j = 0:2 for k = 1:(length (lm_list)) model = stk_model ('stk_materncov32_iso', d); model.lm = lm_list{k}; model.param = log ([1; 5]); switch j % test various scenarios for lognoisevariance case 0 model.lognoisevariance = -inf; case 1 model.lognoisevariance = 0; case 2 model.lognoisevariance = (1 + rand (n, 1)) * 1e-3; end M_post = stk_model_gpposterior (model, x_obs, z_obs); [loo_pred, loo_res] = stk_predict_leaveoneout (M_post); [direct_pred, direct_res] = stk_predict_leaveoneout_direct (M_post); assert (stk_isequal_tolrel (loo_pred, direct_pred)); assert (stk_isequal_tolrel (loo_res, direct_res)); end end 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_predict.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_predict.m ***** shared n, m, M_post, M_prior, x0, x_obs, z_obs, x_prd, y_prd, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = (linspace (0, pi, n + m))'; idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (x_obs); x_prd = x0(idx_prd); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error y_prd = stk_predict (M_post); ***** test y_prd = stk_predict (M_post, x_prd); ***** error y_prd = stk_predict (M_post, [x_prd x_prd]); ***** error y_prd = stk_predict (M_post, x_prd, 0); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % nargout = 2, compute only variances M_post1 = stk_model_gpposterior (M_prior, x_obs, []); [y_prd_nan, lambda] = stk_predict (M_post1, x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd_nan.mean))); ***** test % discrete model (prediction indices provided) M_prior1 = stk_model ('stk_discretecov', M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, idx_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); ***** test % discrete model (prediction indices *not* provided) M_prior1 = stk_model ('stk_discretecov', M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, []); % predict them all! assert (stk_isequal_tolrel (y_prd, y_prd1(idx_prd, :))); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/subsref.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/subsref.m ***** shared M_post, n n = 15; x_obs = (linspace (0, pi, n))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** assert (isstruct (M_post.prior_model)); ***** assert (isequal (size (M_post.input_data), [n 1])); ***** assert (isequal (size (M_post.output_data), [n 1])); ***** assert (isa (M_post.kreq, 'stk_kreq_qr')); ***** error M_post(1); ***** error M_post{1}; 6 tests, 6 passed, 0 known failure, 0 skipped [inst/core/stk_model_update.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_model_update.m ***** test x1 = (linspace (0, 1, 15))'; z1 = sin (x1); x2 = (linspace (2, 3, 15))'; z2 = sin (x2); xt = (linspace (1, 2, 15))'; zt = sin (xt); % Prior model M0 = stk_model ('stk_materncov32_iso'); M0.param = log ([1.0; 2.1]); M1 = stk_model_update (M0, x1, z1); M1 = stk_model_update (M1, x2, z2); % this calls @stk_model_gpposterior/... zp1 = stk_predict (M1, xt); M2 = stk_model_gpposterior (M0, [x1; x2], [z1; z2]); zp2 = stk_predict (M2, xt); assert (stk_isequal_tolabs (double (zp2 - zp1), zeros (15, 2), 1e-10)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/stk_predict_leaveoneout.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_predict_leaveoneout.m ***** shared n, x_obs, z_obs, model n = 20; x_obs = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); model = stk_model ('stk_materncov32_iso'); model.param = log ([1; 5]); ***** test % one output loo_pred = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); ***** test % two outputs [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); ***** test % heteroscedastic noise case model.lognoisevariance = (1 + rand (n, 1)) * 1e-6; [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/stk_predict.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_predict.m ***** shared n, m, model, x0, x_obs, z_obs, x_prd, y_prd1, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = stk_sampling_regulargrid(n+m, d, [0; pi]); idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (double (x_obs)); x_prd = x0(idx_prd); model = stk_model('stk_materncov32_iso'); model.param = log ([1.0; 2.1]); ***** error y_prd1 = stk_predict(); ***** error y_prd1 = stk_predict(model); ***** error y_prd1 = stk_predict(model, x_obs); ***** error y_prd1 = stk_predict(model, x_obs, z_obs); ***** test y_prd1 = stk_predict(model, x_obs, z_obs, x_prd); ***** error y_prd1 = stk_predict(model, x_obs, z_obs, x_prd, 0); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); ***** test % nargout = 2, compute only variances [y_prd1, lambda] = stk_predict (model, x_obs, [], x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd1.mean))); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % predict on large set of locations x_prd = stk_sampling_regulargrid (1e5, 1, [0; pi]); y_prd = stk_predict (model, x_obs, z_obs, x_prd); ***** test % predict on an observation point % https://sourceforge.net/p/kriging/tickets/49/ [zp, lambda] = stk_predict (model, x_obs, z_obs, x_obs(4)); assert (isequal (z_obs(4), zp.mean)) assert (isequal (zp.var, 0)) lambda_ref = zeros (n, 1); lambda_ref(4) = 1; assert (isequal (lambda, lambda_ref)) 12 tests, 12 passed, 0 known failure, 0 skipped [inst/core/stk_make_matcov.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_make_matcov.m ***** shared model, model2, x0, x1, n0, n1, d, Ka, Kb, Kc, Pa, Pb, Pc n0 = 20; n1 = 10; d = 4; model = stk_model ('stk_materncov52_aniso', d); model.lm = stk_lm_affine; model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); model2 = model; model2.lognoisevariance = log(0.01); x0 = stk_sampling_randunif (n0, d); x1 = stk_sampling_randunif (n1, d); ***** error [KK, PP] = stk_make_matcov (); ***** error [KK, PP] = stk_make_matcov (model); ***** test [Ka, Pa] = stk_make_matcov (model, x0); % (1) ***** test [Kb, Pb] = stk_make_matcov (model, x0, x0); % (2) ***** test [Kc, Pc] = stk_make_matcov (model, x0, x1); % (3) ***** error [KK, PP] = stk_make_matcov (model, x0, x1, pi); ***** assert (isequal (size (Ka), [n0 n0])); ***** assert (isequal (size (Kb), [n0 n0])); ***** assert (isequal (size (Kc), [n0 n1])); ***** assert (isequal (size (Pa), [n0 d + 1])); ***** assert (isequal (size (Pb), [n0 d + 1])); ***** assert (isequal (size (Pc), [n0 d + 1])); ***** assert (isequal (Kb, Ka)); ***** test [Ka, Pa] = stk_make_matcov (model2, x0); % (1') ***** test [Kb, Pb] = stk_make_matcov (model2, x0, x0); % (2') ***** error assert (isequal (Kb, Ka)); ***** assert (isequal (Pa, Pb)); ***** assert (isequal (Pa, Pc)); 18 tests, 18 passed, 0 known failure, 0 skipped [inst/core/stk_ortho_func.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_ortho_func.m ***** shared model, x, n, d n = 15; d = 4; model = stk_model ('stk_materncov_aniso', d); x = stk_sampling_randunif (n, d); model = rmfield (model, 'lm'); % Test the old .order approach ***** error P = stk_ortho_func (); ***** error P = stk_ortho_func (model); ***** test P = stk_ortho_func (model, x); ***** error P = stk_ortho_func (model, x, pi); ***** test model.order = -1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 0])); ***** test model.order = 0; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1])); ***** test model.order = 1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, d + 1])); ***** test model.order = 2; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); ***** test model.order = 3; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])); ***** error model.order = 4; P = stk_ortho_func (model, x); % model.order > 3 is not allowed 10 tests, 10 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb08.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb08.m ***** test stk_example_kb08; close all; #========================# # stk_example_kb08 # #========================# 'stk_example_kb08' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb08.m STK_EXAMPLE_KB08 Generation of conditioned sample paths made easy It has been demonstrated, in stk_example_kb05, how to generate conditioned sample paths using unconditioned sample paths and conditioning by kriging. This example shows how to do the same in a more concise way, letting STK take care of the details. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb02.m ***** test stk_example_kb02; close all; #========================# # stk_example_kb02 # #========================# 'stk_example_kb02' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb02.m STK_EXAMPLE_KB02 Ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noiseless dataset. The model and data are the same as in stk_example_kb01, but this time the parameters of the covariance function are estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.21078 2.30259 0.75619 lognoisevariance = -Inf True function and observed data 1.5 |-+ | ***G** +--------------------+ | **** *** |***?***True function| 1 |-+ ** ** +---G---Observations-+ | *** ** | ** ** 0.5 |-+ ** ** *** | G* ** **** **G** | ** ** G** *** 0 |** ** ** *** | ** ** ** | ** ** ** -0.5 |-+ ** ** | ** ** | G* ** -1 |-+ *** *** | ****** | + + + + -1.5 |------------------------------------------------------------------- -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb07.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb07.m ***** test stk_example_kb07; close all; #========================# # stk_example_kb07 # #========================# 'stk_example_kb07' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb07.m STK_EXAMPLE_KB07 Simulation of sample paths from a Matern process Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02n.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb02n.m ***** test stk_example_kb02n; close all; #=========================# # stk_example_kb02n # #=========================# 'stk_example_kb02n' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb02n.m STK_EXAMPLE_KB02N Noisy ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noisy dataset. The model and data are the same as in stk_example_kb02, but this time the parameters of the covariance function and the variance of the noise are jointly estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.098610 2.302585 0.613435 lognoisevariance = -3.0915 True noise variance = 0.0400 Estimated noise variance = 0.0454 True function and noisy observed data 1.5 |-+ | G****** +--------------------+ | **** G *G* |***?***True function| 1 |-+ G** *G +---G---Observations-+ | *** ** | ** ** 0.5 |-+ ** G* G *** | ** ** ****G***G* G | **G ** *** *** 0 |** ** ** *** | ** *G **G | **G ** ** -0.5 |-+ G ** ** | ** **G | **G ** -1 |-+ *** *G* | ***G** | + + + + -1.5 |------------------------------------------------------------------- -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb06.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb06.m ***** test stk_example_kb06; close all; #========================# # stk_example_kb06 # #========================# 'stk_example_kb06' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb06.m STK_EXAMPLE_KB06 Ordinary kriging VS kriging with a linear trend The same dataset is analyzed using two variants of kriging. The left panel shows the result of ordinary kriging, in other words, Gaussian process interpolation assuming a constant (but unknown) mean. The right panel shows the result of adding a linear trend in the mean of the Gaussian process. The difference with the left plot is clear in extrapolation: the first predic- tor exhibits a "mean reverting" behaviour, while the second one captures an increasing trend in the data. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb09.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb09.m ***** test stk_example_kb09; close all; #========================# # stk_example_kb09 # #========================# 'stk_example_kb09' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb09.m STK_EXAMPLE_KB09 Generation of sample paths conditioned on noisy observations A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noisy observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique (stk_generate_samplepaths function). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb05 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01n.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb01n.m ***** test stk_example_kb01n; close all; #=========================# # stk_example_kb01n # #=========================# 'stk_example_kb01n' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb01n.m STK_EXAMPLE_KB01N Ordinary kriging in 1D, with noisy data This example shows how to compute ordinary kriging predictions on a one-dimensional noisy dataset. The Gaussian Process (GP) prior is the same as in stk_example_kb01. The observation noise is Gaussian and homoscedastic (constant variance). Its variance is assumed to be known. Note that the kriging predictor, which is the posterior mean of the GP, does NOT interpolate the data in this noisy example. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.69315 1.38629 0.91629 lognoisevariance = -3.2189 True function and observed data 1.5 |-+ | G****** +--------------------+ | *** G *G* |***?***True function| 1 |-+ G** *G +---G---Observations-+ | ** *** | ** *G G 0.5 |-+** ** ******G G | *G ** *** G **** 0 |** ** ** ** |* ** *G *** | ** ** *G -0.5 |-+ G *G ** * | ** *G | **G ** -1 |-+ ** G* | ***G** | + + + + -1.5 |----------------------------------------------------------- -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb03.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb03.m ***** test stk_example_kb03; close all; #========================# # stk_example_kb03 # #========================# 'stk_example_kb03' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb03.m STK_EXAMPLE_KB03 Ordinary kriging in 2D An anisotropic Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function (variance, regularity and ranges) are estimated using the Restricted Maximum Likelihood (ReML) method. The mean function of the GP prior is assumed to be constant and unknown. This default choice can be overridden by means of the model.lm property. The function is sampled on a space-filling Latin Hypercube design, and the data is assumed to be noiseless. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. BOX = 2-dimensional hyper-rectangle (stk_hrect object): : x_1 x_2 lower_bounds : -5 0 upper_bounds : 10 15 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb01.m ***** test stk_example_kb01; close all; #========================# # stk_example_kb01 # #========================# 'stk_example_kb01' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb01.m STK_EXAMPLE_KB01 Ordinary kriging in 1D, with noiseless data This example shows how to compute ordinary kriging predictions on a one-dimensional noiseless dataset. The word 'ordinary' indicates that the mean function of the GP prior is assumed to be constant and unknown. A Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function are assumed to be known (i.e., no parameter estimation is performed here). Note that the kriging predictor, which is the posterior mean of the GP, interpolates the data in this noiseless example. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.69315 1.38629 0.91629 lognoisevariance = -Inf True function and observed data 1.5 |-+ | ***G** +--------------------+ | *** *** |***?***True function| 1 |-+ ** ** +---G---Observations-+ | ** *** | ** ** 0.5 |-+** ** *****G | *G ** *** **** 0 |** ** G* ** |* ** ** *** | ** ** ** -0.5 |-+ ** ** * | ** ** | G* ** -1 |-+ ** ** | ****** | + + + + -1.5 |----------------------------------------------------------- -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb05.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb05.m ***** test stk_example_kb05; close all; #========================# # stk_example_kb05 # #========================# 'stk_example_kb05' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb05.m STK_EXAMPLE_KB05 Generation of conditioned sample paths A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noiseless observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique. In short, this means that unconditioned sample path are simulated first (using stk_generate_samplepaths), and then conditioned on the observations by kriging (using stk_conditioning). Note: in this example, for pedagogical purposes, conditioned samplepaths are simulated in two steps: first, unconditioned samplepaths are simulated; second, conditioned samplepaths are obtained using conditioning by kriging. In practice, these two steps can be carried out all at once using stk_generate_samplepath (see, e.g., stk_example_kb09). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb09 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc04.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc04.m ***** test stk_example_misc04; close all; #==========================# # stk_example_misc04 # #==========================# 'stk_example_misc04' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc04.m STK_EXAMPLE_MISC04 Pareto front simulation DESCRIPTION We consider a bi-objective optimization problem, where the objective functions are modeled as a pair of independent stationary Gaussian processes with a Matern 5/2 anisotropic covariance function. Figure (a): represent unconditional realizations of the Pareto front and and estimate of the probability of being non-dominated at each point of the objective space. Figure (b): represent conditional realizations of the Pareto front and and estimate of the posteriorior probability of being non-dominated at each point of the objective space. EXPERIMENTAL FUNCTION WARNING This script uses the stk_plot_probdom2d function, which is currently considered an experimental function. Read the help for more information. REFERENCE [1] Michael Binois, David Ginsbourger and Olivier Roustant, Quantifying uncertainty on Pareto fronts with Gaussian Process conditional simu- lations, European J. of Operational Research, 2043(2):386-394, 2015. See also: stk_plot_probdom2d Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. simulated Pareto fronts Proba. of being dominated |------------------------| 4000 +---++--+-+--++---+ +||100% |%+ + %$+= @#$&*@@*& | | | | | | | | | || 2000 |%+ %$ = @#$&*@@*& +-| + + + + + + + + || |% %$ = @#$&*@@*&& | | | || |% %$ = @#$&*@@* &&&| 2000 +---+ +---+ || 1000 |%%%%%%%%%%%%%%%%%@%%%%%%| | | +||75% | %$ ==@#@&*@======| | | || 0 |-+ %$########@######| | | || | %$$$$$$$$$@$$$$$$| 0 +---+ +---+ || | $&*@***second objective | +||50% -1000 |-+ $& @@@@@@@| -2000 +---+ +---+ || | $& @ | | | || -2000 |-+ $& @@@@@@@| | | || | $& | | | || | $& | -4000 +---+ +---+ +||25% -3000 |-+ $&&&&&&&&&| | | || | | + + + + + + + + || -4000 |-+ +-| | | | | | | | | || | + + + + + + | -6000 +---++--+-+--++---+ || |------------------------| -4-30-20-1000100203000+||0% -300-200-1000 0 1002000 first objective 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc03.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc03.m ***** test stk_example_misc03; close all; #==========================# # stk_example_misc03 # #==========================# 'stk_example_misc03' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc03.m STK_EXAMPLE_MISC03 How to deal with (known) seasonality Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = 1.6631 -1.7871 lognoisevariance = -4.7448 model2 = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = @(t) [ones(length (t), 1), sin(2 * pi * t / T0), cos(2 * pi * t / T0)] dim = 1 param = -9.55317 -0.95617 lognoisevariance = -4.7395 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc01.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc01.m ***** test stk_example_misc01; close all; #==========================# # stk_example_misc01 # #==========================# 'stk_example_misc01' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc01.m STK_EXAMPLE_MISC01 Several correlation functions from the Matern family The Matern 1/2 correlation function is also known as the "exponential correla- tion function". This is the correlation function of an Ornstein-Ulhenbeck pro- cess. The Matern covariance function tends to the Gaussian correlation function when its regularity (smoothness) parameter tends to infinity. See also: stk_materncov_iso, stk_materncov_aniso Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc02.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc02.m ***** test stk_example_misc02; close all; #==========================# # stk_example_misc02 # #==========================# 'stk_example_misc02' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc02.m STK_EXAMPLE_MISC02 How to use priors on the covariance parameters A Matern covariance in dimension one is considered as an example. A Gaussian prior is used for all three parameters: log-variance, log-regularity and log- inverse-range. The corresponding parameter estimates are Maximum A Posteriori (MAP) estimates or, more precisely, Restricted MAP (ReMAP) estimates. Several values for the variance of the prior are successively considered, to illustrate the effect of this prior variance on the parameter estimates. When the variance is small, the MAP estimate is close to the mode of the prior. On the other hand, when the variance is large, the prior becomes "flat" and the MAP estimate is close to the ReML estimate (see figure b). Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. prior std = 10.00 prior std = 1.00 3 |-+ 4 |-+ #### |%%## ####%%%% 3 |-+# ##%%%%% 2 |-+&&&%&&&%# #%&&&&&&&& 2 |-+&&% #%%% %%&&&&&&& 1 |-+X==GG==&&%###&&&XXXXXX& 1 |-+X&&GG==&&% &&&&XXXXX& |====predicted output z=== |======&&====G=G========== 0 |-+&&& %&&&&&&&&&&XXXXXX& 0 |-+&&& %&&&&&&&&&&XXXXXX& -1 |-+%# #### #%&&&&&&&& -1 |-+%# #%&&&&&&&& |# + + + ##+####+ -2 |-+ + + + ##+%%%%+ -2 |------------------------- -3 |------------------------- 0 prior std = 0.20.8 1 0 prior std = 0.01.8 1 input x input x 6 |-+ 6 |-+ | ### | # 4 |-+ #%%%%%% 4 |-+ #%%%%% 2 |-+%# #&&% %&&&&&&&& 2 |-+ %%# #&&&&&&&& |X&&=predicted output z=== |&&&&=GG=====#%=========== 0 |-+==& %&&=G=G&&&&XXXXX& 0 |-+=== %&=G=G&&&&&&XXX& -2 |-+&% #%&&&&&&& -2 |-+&# #%%&&&&& |%# + + + +#%%%+ |## + + + +###%+ -4 |------------------------- -4 |------------------------- 0 0.2 0.4 0.6 0.8 1 0 0.2 0.4 0.6 0.8 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe03.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe03.m ***** test stk_example_doe03; close all; #=========================# # stk_example_doe03 # #=========================# 'stk_example_doe03' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe03.m STK_EXAMPLE_DOE03 A simple illustration of 1D Bayesian optimization Our goal here is to optimize (maximize) the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi]. A Matern 5/2 prior with known parameters is used. Evaluations points are chosen sequentially using the Expected Improvement (EI) criterion, starting from an initial design of N0 = 3 points. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 15 |-+ 10 |-+ ####%%%%%%%%%%%##### ################ 5 |-+%&&&&&&&&&&&&&&&&&&&&&&%# #%===========&&&&&%%%## 0 |-+*====F========XXXXXXXX&&&&& ====&XXXXXXXXX===XX&&&&&&%% z |&&***************************G***********************XX&&&& -5 |-+&&&&&&XXXXXXXXXXXXXX====&&# #&&&&&&XXXXXXXXXXXX===*******G -10 |-+ ##%%&&&&&&&&&&&&&&&&%%# ##%%&&&&&&&&&&&&&&&=======# -15 |-+ ##+####%%###+### + ###+%%%%%%%%%+%%%%## + -20 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 1 |-----------------------------------------------------------| | ***F******** + + + + | 0.8 |-+ ** ****** +-| 0.6 |-+* *** *********** +-| EI | * ** *** *** | 0.4 |** ** ** *** +-| 0.2 |*+ ** ** ** +-| |* + + ** + ** + + ** | 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 15 |-+ 10 |-+ ##%%%%%%%%#### #####%%%%%%###### 5 |-+%&&&% %&&&&&&&&&&&&&&&%# #%===========&&&&&&%%%# 0 |-+*****G******F*XXXXXXXX&&&&& ====&XXXXXXXXX===XXX&&&&&&% z |&&&&&&& #&&&&XX**************G************************X&&&& -5 |-+ #%&&&&&&&&&&====&&# #&&&&&&XXXXXXXXXXXX===X******G -10 |-+ #%%%%%%%%%%%# #%%&&&&&&&&&&&&&&&=======# -15 |-+ + ##+## + ###+###%%%%%%+%%%### + -20 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.8 |-----------------------------------------------------------| 0.7 |-+ + **F* + + + + +-| 0.6 |-+ ** **** +-| 0.5 |-+ ** *** +-| EI 0.4 |-+ **** ** ** ******** +-| 0.3 |-+** * * ** *** **** +-| 0.2 |-** ** ** ** *** +-| 0.1 |-* **+ + ** + *** + +*** +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 15 |-+ 10 |-+ #### #####%%%%%%###### 5 |-+%%%%# #### #%&&&&&&&%# #%=======F===&&&&&&%%%# 0 |-+*****G******G***&XXXXX&&&&& ====&XXXXXXXXX===XXX&&&&&&% z |&&&&&&& %&&&&&==************G************************X&&&& -5 |-+ #%&&&&====&&# #&&&&&&XXXXXXXXXXXX===X******G -10 |-+ ####### #%%&&&&&&&&&&&&&&&=======# -15 |-+ + + + ###+####%%%%%+%%%### + -20 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.5 |-----------------------------------------------------------| 0.45 |-+ + + + + + +-| 00.4 |-+ *** ****F**** +-| 0.3 |-+ * ** * **** ** *** +-| EI 0.25 |-+* * *** ** ** ** *** +-| 0.2 |-+* **** * ** ** ** ** +-| 0.15 |-** ** * ** ** ** ** +-| 0.05 |-* **+ * * + ** + ** + + *** +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 15 |-+ ### 10 |-+ #%%%%%# #%&&&&%%%## | #### #%%%%%%## #&&===***G***XX&&&&&%%# 5 |-+&&&&&&&&&&&&#&&&&&&&&&&&&% #&==*****&&%&=F****XX&&&&%# z 0 |-+*****G******G***********&&*G*****X&&&% #&===X****X&&&% -5 |-+&&&% ### %&========****=&&&&&&%% #%===XX******&% | %%&&&&&&&&% #### #%===&&&&&**G -10 |-+ + +###### + + +#%====== + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.4 |-----------------------------------------------------------| 0.35 |-+ + + + + F + +-| 0.3 |-+ *** +-| 0.25 |-+ *** ** ** +-| EI 0.2 |-+ ** * * ** +-| 0.15 |-+ * ** ** +-| 0.1 |-+ * ** ** +-| 0.05 |-+ + + + ** + * ** +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 15 |-+ 10 |-+ #%&&&&% | #### #%%%%%%## %&&==**F*G*= ####### 5 |-+&&&&&&&&&&&& &&&&&&&&&&&%% #&=****&&&% &*G*&&&&&&&%%# z 0 |-+*****G******G*********XX&&&G****&&&&# *****XXX&&&&# -5 |-+&&&% ### %&======******=&&&&&%# %===*******&&% | %%&&&&&&&&% #%===&XXX***G -10 |-+ + +##%### + + +%%======#+ -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.8 |-----------------------------------------------------------| 0.7 |-+ + + + F + +-| 0.6 |-+ *** +-| 0.5 |-+ ** * +-| EI 0.4 |-+ * * +-| 0.3 |-+ ** * +-| 0.2 |-+ * * +-| 0.1 |-+ + + + ** + * + +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ ##%&&& | #### #%%%%%%## %&&=**FG*G** ####### 5 |-+&&&&&&&&&&&% %&&&&&&&&&&%# #&=***&& %*G*&&&&&&&%%# 0 |-+*****G******G*****XXXXX&&&&%****&&% ****XXX&&&&%# z |&&&&&&# #%%%##&===**********G*&&&%# &==*****X&&&% -5 |-+## %&&&&======&& %===XX******G -10 |-+ ##%%&&&&%%# #%====&&==== | + +###### + + +##%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.06 |-----------------------------------------------------------| 0.05 |-+ + + + + + +-| | *F | 0.04 |-+ *** +-| EI 0.03 |-+ * * +-| 0.02 |-+ * ** +-| | * ** | 0.01 |-+ + + + ** ** + +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ | #### #%%%%%%## %&&***GF*G** ####### 5 |-+&&&&&&&&&&&% %&&&&&&&&&&%# &=***& #*G*&&&&&&&%%# 0 |-+*****G******G*****XXXXX&&&&%****&# ****XXX&&&&%# z |&&&&&&# #%%%##&===**********G*&&% &=******X&&&% -5 |-+## %&&&&======&& %===XX******G -10 |-+ #%%&&&&&&%# #%====&&==== | + +###### + + +#%%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.03 |-----------------------------------------------------------| 0.025 |-+ + + + + + +-| | F | 0.02 |-+ * +-| EI 0.015 |-+ ** +-| 0.01 |-+ ** +-| | ** | 0.005 |-+ + + + *** + +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ | #### #%%%%%%## #&&***GF*G** ####### 5 |-+&&&&&&&&&&&% %&&&&&&&&&%%# &=***& #*G*&&&&&&&%%# 0 |-+*****G******G*****XXXXX&&&&%***&&# ****XXX&&&&%# z |&&&&&&# #%%%##&===**********G*&&% &=******X&&&% -5 |-+## %&&&&======&& %===XX******G -10 |-+ #%%&&&&&&%# #%====&&==== | + +###### + + +#%%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.006 |-----------------------------------------------------------| 0.005 |-+ + + + F + +-| | * | 0.004 |-+ * +-| EI 0.003 |-+ * +-| 0.002 |-+ * +-| | * | 0.001 |-+ + **** + * + +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ | #### #%%%%%%## #&&***GG*G** ####### 5 |-+&&&&&&&&&&&% %&&&&&&&&&%%# &=***& #*G*&&&&&&&%%# 0 |-+*****G******G*****XXXXX&&&&%***&& ****XXX&&&&%# z |&&&&&&# #%%%##&===**F*******G*&&# &=******X&&&% -5 |-+## %&&&&======&& %===XX******G -10 |-+ #%%&&&&&&%# #%====&&==== | + +###### + + +#%%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.0007 |-----------------------------------------------------------| 0.0006 |-+ + + + + + +-| 0.0005 |-+ *F +-| 0.0004 |-+ *** +-| | * * | 0.0003 |-+ * * +-| 0.0002 |-+ * * +-| 0.0001 |-+ + *+ ** + *** + + +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ | #### #&&F**GG*G** ####### 5 |-+&&&&&&&&&&&& # &****& #*G*&&&&&&&%%# 0 |-+*****G******G**&&% #%%%%%&***&& ****XXX&&&&%# z |&&&&&&% #### #&*****G&&&****G*&%# &=******X&&&% -5 |-+## #&&&&*****=&& %===XX******G -10 |-+ #%%%%# #%====&&==== | + + + + +#%%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.00016 |-----------------------------------------------------------| 0.00014 |-+ + + + + + +-| 0.00012 |-+ *F +-| 0.0001 |-+ ** +-| 8e-05 |-+ * * +-| 6e-05 |-+ * * +-| 4e-05 |-+ * * ** +-| 2e-05 |-+ + + + * * * ** ** +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 : x z x0(001) : 0.00000 0.00000 x0(002) : 6.00000 -1.67649 x0(003) : 12.00000 -6.43888 xg(057) : 1.68421 1.67339 xg(099) : 2.94737 0.56886 xg(282) : 8.45113 6.98861 xg(299) : 8.96241 3.99788 xg(268) : 8.03008 7.90589 xg(258) : 7.72932 7.66935 xg(265) : 7.93985 7.91060 xg(266) : 7.96992 7.91642 xg(145) : 4.33083 -4.01937 Number of evaluations: 3 + 9 = 12. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe02.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe02.m ***** test stk_example_doe02; close all; #=========================# # stk_example_doe02 # #=========================# 'stk_example_doe02' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe02.m STK_EXAMPLE_DOE02 "Sequential Maximin" design In this example, a two-dimensional space-filling design is progressively enriched with new points using a "sequential maximin" approach. More precisely, the k-th point X(k, :) is selected to maximize the distance to the set of all previously selected points X(1, :), X(2, :), ..., X(k-1, :). NOTES: * The resulting design is NOT optimal with respect to the maximin criterion (separation distance). * This procedure is not truly a *sequential* design procedure, since the choice of the k-th point X(k, :) does NOT depend on the response at the previously selected locations X(i, :), i < k. REFERENCE [1] Emmanuel Vazquez and Julien Bect, "Sequential search based on kriging: convergence analysis of some algorithms", In: ISI - 58th World Statistics Congress of the International Statistical Institute (ISI'11), Dublin, Ireland, August 21-26, 2011. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. n = 10, fd = 3.19e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 11, fd = 3.04e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 12, fd = 3.02e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 13, fd = 2.69e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 14, fd = 2.63e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 15, fd = 2.42e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 16, fd = 2.37e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | F | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 17, fd = 2.33e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | F | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 18, fd = 2.27e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | F | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | F F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 19, fd = 2.22e-01 1 |---------------------------------------------------------------------| | + + + + | | F | 0.8 |-+ F +-| | F | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | F F | | | | F | 0.2 |-+ F +-| | | | + + + +F | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe05.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe05.m ***** test stk_example_doe05; close all; #=========================# # stk_example_doe05 # #=========================# 'stk_example_doe05' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe05.m STK_EXAMPLE_DOE05 A simple illustration of 1D Bayesian optimization Our goal here is to minimize the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi], using noisy evaluations. Evaluations points are chosen sequentially using either AKG criterion (default) or the EQI criterion (set SAMPCRIT_NAME to 'EQI'); Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. 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|------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.012 |-----------------------------------------------------------| 0.01 |-+ + + + + + * *+-| | ** ** | 0.008 |-+ * ** *-| 0.006 |-+ * ** *-| 0.004 |-+ * ** *-| | * ** * | 0.002 |-+ + + + + + * ** *-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 20 |-+ ##### 15 |-+ ##%%%%%%%%# 10 |-+#%%%%%%%%%## #%&&&&&&&&&&&&%# 5 |-+&&&&G&&&&&&&&%%%## ###%%&&&&X=====*****&&&# z |**************G*&&&&&&&&&&&&&G*********XXXX*G***& 0 |-+=&&&%%&&&&&&==******G******===&XXXXX&&&&&%%&=**G& G -5 |-+## #####%&&&&&======&%%%%&&&&&&&%%## #=**GGG GG*GG -10 |-+ + ##+####### + #######+ +%GGGGGG*=+ -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.01 |-----------------------------------------------------------| | + + + + + * * | 0.008 |-+ ** **-| 0.006 |-+ * * **-| | * ** * | 0.004 |-+ * ** *-| 0.002 |-+ * ** *-| | + + + + + * ** * | 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 20 |-+ ##### 15 |-+ ##%%%%%%%%# 10 |-+#%%%%%%%%%## #%&&&&&&&&&&&&%# 5 |-+&&&&G&&&&&&&&%%%## ###%%&&&&X=====*****&&&# z |**************G*&&&&&&&&&&&&&G*********XXXX*G***&# 0 |-+=&&&%%&&&&&&==******G******===&XXXXX&&&&&%%&=**G& G -5 |-+## #####%&&&&&======&%%%%&&&&&&&%%## #=**GGG GG*GG -10 |-+ + ##+####### + #######+ +%GGGGGG*=+ -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.02 |-----------------------------------------------------------| | + + + + + | 0.015 |-+ * F+-| | ** ** | 0.01 |-+ * ** *-| | * ** * | 0.005 |-+ * ** *-| | + + + + ***** * *| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 20 |-+ ##### 15 |-+ ##%%%%%%%%# 10 |-+#%%%%%%%%%# #&&&&&&&&&&&&%# 5 |-+&&&&G&&&&&&&&%%%## ###%%&&&&X====******&&&# z |**************G*&&&&&&&&&&&&&G*********XXXX*G***& 0 |-+=&&&%%&&&&&&==******G******===&XXXXX&&&&&%%&=**G& G -5 |-+## #####%&&&&&======&%%%%%&&&&&%%%## #=**GGG GG*GG -10 |-+ + ##+####### + #######+ +%GGGGGG*=+ -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.01 |-----------------------------------------------------------| | + + + + + F * | 0.008 |-+ * *+-| 0.006 |-+ ** **-| | * ** * | 0.004 |-+ * ** *-| 0.002 |-+ * ** *-| | + + + + + * ** * | 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 : x z init001 : 0.00000 1.2658 init002 : 3.00000 1.6114 init003 : 6.00000 1.0700 init004 : 9.00000 4.5522 init005 : 12.00000 -6.6575 xg(185) : 11.09548 -11.6812 xg(176) : 10.55276 -10.1779 xg(200) : 12.00000 -3.6271 xg(166) : 9.94975 -2.6007 xg(166) : 9.94975 -1.7978 xg(187) : 11.21608 -8.0077 xg(200) : 12.00000 -6.1560 xg(174) : 10.43216 -12.7754 xg(196) : 11.75879 -6.0876 xg(182) : 10.91457 -12.3350 xg(178) : 10.67337 -10.4509 xg(186) : 11.15578 -11.1612 xg(174) : 10.43216 -9.1789 xg(186) : 11.15578 -10.7789 xg(174) : 10.43216 -6.0605 xg(076) : 4.52261 -3.8262 xg(025) : 1.44724 4.9671 xg(188) : 11.27638 -11.6923 xg(190) : 11.39698 -10.6456 xg(178) : 10.67337 -8.2439 xg(191) : 11.45729 -8.6512 xg(177) : 10.61307 -8.8359 xg(190) : 11.39698 -11.2871 xg(177) : 10.61307 -8.0917 xg(190) : 11.39698 -12.9987 xg(178) : 10.67337 -8.5019 xg(191) : 11.45729 -11.5610 xg(178) : 10.67337 -10.7378 xg(191) : 11.45729 -9.8621 xg(178) : 10.67337 -9.9656 xg(191) : 11.45729 -11.3117 xg(178) : 10.67337 -10.5053 xg(191) : 11.45729 -7.7073 xg(178) : 10.67337 -10.0515 xg(190) : 11.39698 -13.5809 xg(179) : 10.73367 -8.3434 xg(179) : 10.73367 -12.8770 xg(191) : 11.45729 -11.2095 xg(179) : 10.73367 -10.7184 xg(191) : 11.45729 -7.8015 xg(190) : 11.39698 -9.9827 xg(178) : 10.67337 -11.4757 xg(190) : 11.39698 -6.3179 xg(189) : 11.33668 -13.3628 xg(178) : 10.67337 -11.7713 xg(189) : 11.33668 -11.7783 xg(178) : 10.67337 -12.2572 xg(189) : 11.33668 -9.6126 xg(178) : 10.67337 -9.7828 xg(189) : 11.33668 -13.2131 xg(178) : 10.67337 -11.6630 xg(189) : 11.33668 -13.0020 xg(178) : 10.67337 -10.6802 xg(189) : 11.33668 -14.0628 xg(178) : 10.67337 -11.6970 xg(189) : 11.33668 -9.0652 xg(178) : 10.67337 -7.3232 xg(178) : 10.67337 -9.5045 xg(189) : 11.33668 -10.9816 xg(184) : 11.03518 -12.0647 xg(180) : 10.79397 -13.4861 xg(180) : 10.79397 -10.4568 xg(180) : 10.79397 -6.6235 xg(180) : 10.79397 -8.9533 xg(180) : 10.79397 -10.5946 xg(180) : 10.79397 -12.5578 xg(180) : 10.79397 -10.1496 xg(190) : 11.39698 -10.7511 xg(180) : 10.79397 -7.5412 xg(180) : 10.79397 -9.7217 xg(190) : 11.39698 -14.2941 xg(180) : 10.79397 -11.4635 xg(180) : 10.79397 -10.9952 xg(191) : 11.45729 -7.2237 xg(190) : 11.39698 -8.3622 xg(190) : 11.39698 -9.9034 xg(180) : 10.79397 -8.1739 xg(180) : 10.79397 -10.2753 xg(190) : 11.39698 -11.0154 xg(180) : 10.79397 -10.3531 xg(180) : 10.79397 -13.2601 xg(190) : 11.39698 -9.5241 xg(190) : 11.39698 -8.6760 xg(190) : 11.39698 -9.4207 xg(180) : 10.79397 -12.8357 xg(190) : 11.39698 -9.9756 xg(190) : 11.39698 -11.8555 xg(180) : 10.79397 -5.9983 xg(180) : 10.79397 -5.5866 xg(180) : 10.79397 -11.7431 xg(180) : 10.79397 -11.2303 xg(190) : 11.39698 -13.4180 xg(180) : 10.79397 -10.3801 xg(180) : 10.79397 -7.9673 xg(180) : 10.79397 -13.4787 Number of evaluations: 5 + 95 = 100. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe01.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe01.m ***** test stk_example_doe01; close all; #=========================# # stk_example_doe01 # #=========================# 'stk_example_doe01' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe01.m STK_EXAMPLE_DOE01 Examples of two-dimensional designs All designs are constructed on the hyper-rectangle BOX = [0; 2] x [0; 4]. Examples of the following designs are shown: a) Regular grid --> stk_sampling_regulargrid, b) "Maximin" latin hypercube sample --> stk_sampling_maximinlhs, c) RR2-scrambled Halton sequence --> stk_sampling_halton_rr2, d) Uniformly distributed random sample --> stk_sampling_randunif. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe04.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe04.m ***** test stk_example_doe04; close all; #=========================# # stk_example_doe04 # #=========================# 'stk_example_doe04' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe04.m STK_EXAMPLE_DOE04 Probability of misclassification The upper panel shows posterior means and variances as usual, and the threshold of interest, which is at T = 0.85 (dashed line). The lower panel shows the probability of misclassification as a function of x (blue curve), i.e., the probability that the actual value of the function is not on the same side of the threshold as the prediction (posterior mean). We also plot the expected future probability of misclassification (magenta curve), should a new evaluation be made at x = 3. Note that both probabilities are obtained using stk_pmisclass. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_goldsteinprice.m] >>>>> /build/octave-stk-2.5.1/inst/examples/test_functions/stk_testfun_goldsteinprice.m ***** test % Use with nargin == 0 for visualisation stk_testfun_goldsteinprice (); close all; ***** assert (stk_isequal_tolabs ... (stk_testfun_goldsteinprice ([0, -1]), 3.0, 1e-12)) 2 tests, 2 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testcase_truss3.m] >>>>> /build/octave-stk-2.5.1/inst/examples/test_functions/stk_testcase_truss3.m ***** shared tc, xd, n tc = stk_testcase_truss3 (); n = 5; xd = stk_sampling_randunif (n, [], tc.search_domain); ***** test v = stk_testfun_truss3_vol (xd, tc.constants); z = stk_testfun_truss3_bb (xd, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); ***** test F = stk_dataframe (zeros (n, 2), {'F1' 'F2'}); F(:, 1) = tc.constants.F1_mean + tc.constants.F1_std * randn (n, 1); F(:, 2) = tc.constants.F2_mean + tc.constants.F2_std * randn (n, 1); x = [xd F]; v = stk_testfun_truss3_vol (x, tc.constants); z = stk_testfun_truss3_bb (x, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); 2 tests, 2 passed, 0 known failure, 0 skipped Checking C++ files ... Summary: 1564 tests, 1564 passed, 0 known failures, 0 skipped dh_octave_substvar -O--buildsystem=octave dh_installdocs -O--buildsystem=octave dh_installchangelogs -O--buildsystem=octave dh_octave_changelogs -O--buildsystem=octave dh_octave_examples -O--buildsystem=octave dh_installinit -O--buildsystem=octave dh_installsystemduser -O--buildsystem=octave dh_perl -O--buildsystem=octave dh_link -O--buildsystem=octave dh_strip_nondeterminism -O--buildsystem=octave dh_compress -O--buildsystem=octave dh_fixperms -O--buildsystem=octave dh_missing -O--buildsystem=octave dh_dwz -O--buildsystem=octave dh_strip -O--buildsystem=octave dh_makeshlibs -O--buildsystem=octave dh_shlibdeps -O--buildsystem=octave dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex were not linked against libstdc++.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex were not linked against libgcc_s.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex were not linked against liboctave.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/i386-linux-gnu/octave/packages/stk-2.5.1/i686-pc-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex were not linked against libgomp.so.1 (they use none of the library's symbols) dh_installdeb -O--buildsystem=octave dh_gencontrol -O--buildsystem=octave dpkg-gencontrol: warning: package octave-stk: substitution variable ${octave:Upstream-Description} unused, but is defined dh_md5sums -O--buildsystem=octave dh_builddeb -O--buildsystem=octave dpkg-deb: building package 'octave-stk-dbgsym' in '../octave-stk-dbgsym_2.5.1-2_i386.deb'. dpkg-deb: building package 'octave-stk' in '../octave-stk_2.5.1-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../octave-stk_2.5.1-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23672 and its subdirectories I: Current time: Mon Jun 15 21:08:02 -12 2020 I: pbuilder-time-stamp: 1592298482 Tue Jun 16 09:08:03 UTC 2020 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Tue Jun 16 09:08:03 UTC 2020 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Tue Jun 16 09:11:11 UTC 2020 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Tue Jun 16 09:11:12 UTC 2020 I: octave-stk_2.5.1-2_i386.changes: Format: 1.8 Date: Wed, 02 Jan 2019 22:57:53 -0200 Source: octave-stk Binary: octave-stk octave-stk-dbgsym Architecture: i386 Version: 2.5.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Octave Group Changed-By: Rafael Laboissiere Description: octave-stk - (not so) Small Toolbox for Kriging Changes: octave-stk (2.5.1-2) unstable; urgency=medium . * Team upload . * d/control: + Add Rules-Requires-Root: no + Bump Standards-Version to 4.3.0 + Bump to debhelper compat level 12 * Build-depend on debhelper-compat instead of using d/compat Checksums-Sha1: 7fe4faf63494a59eb46ea29fa0ce36734f2fdaf4 65392 octave-stk-dbgsym_2.5.1-2_i386.deb 916f7e25369c95922c431d024ed1adda14d49e9c 14834 octave-stk_2.5.1-2_i386.buildinfo f3496b47451acfff0ade604da6d7f33ecceba1c0 289752 octave-stk_2.5.1-2_i386.deb Checksums-Sha256: 75a7012a3e79173e5e908c5aeba08930d9ea34fe3fcb0dd75106f12a57e059d1 65392 octave-stk-dbgsym_2.5.1-2_i386.deb ff3bbebdf48199dca901ad248e58786db3f3ccc1dc064f7722045388d36dc7c6 14834 octave-stk_2.5.1-2_i386.buildinfo bc223997f145c697d431a4b0f175b2b460abc21bd6218635136af9d1660c0ae9 289752 octave-stk_2.5.1-2_i386.deb Files: 4bf42f7be2541e2d513fc2c53a3d6bd4 65392 debug optional octave-stk-dbgsym_2.5.1-2_i386.deb f78ef60b5fec77318c47c4a0087e0fc1 14834 math optional octave-stk_2.5.1-2_i386.buildinfo 20f5a3c3d1739171db483b0d25848840 289752 math optional octave-stk_2.5.1-2_i386.deb Tue Jun 16 09:11:15 UTC 2020 I: diffoscope 147 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.0ynQoEfNpj/octave-stk_2.5.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.0ynQoEfNpj/octave-stk_2.5.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.0ynQoEfNpj/octave-stk_2.5.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.0ynQoEfNpj/b1/octave-stk_2.5.1-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.0ynQoEfNpj/b2/octave-stk_2.5.1-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.018s) 1.018s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.044s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Jun 16 09:11:18 UTC 2020 I: diffoscope 147 found no differences in the changes files, and a .buildinfo file also exists. Tue Jun 16 09:11:18 UTC 2020 I: octave-stk from buster built successfully and reproducibly on i386. Tue Jun 16 09:11:20 UTC 2020 I: Submitting .buildinfo files to external archives: Tue Jun 16 09:11:20 UTC 2020 I: Submitting 16K b1/octave-stk_2.5.1-2_i386.buildinfo.asc Tue Jun 16 09:11:21 UTC 2020 I: Submitting 16K b2/octave-stk_2.5.1-2_i386.buildinfo.asc Tue Jun 16 09:11:21 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jun 16 09:11:21 UTC 2020 I: Done submitting .buildinfo files. Tue Jun 16 09:11:21 UTC 2020 I: Removing signed octave-stk_2.5.1-2_i386.buildinfo.asc files: removed './b1/octave-stk_2.5.1-2_i386.buildinfo.asc' removed './b2/octave-stk_2.5.1-2_i386.buildinfo.asc'