Sat Jun 22 00:45:08 UTC 2019 I: starting to build netcdf4-python/buster/i386 on jenkins on '2019-06-22 00:44' Sat Jun 22 00:45:08 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_13/174/console.log Sat Jun 22 00:45:08 UTC 2019 I: Downloading source for buster/netcdf4-python=1.4.2-1 --2019-06-22 00:45:08-- http://deb.debian.org/debian/pool/main/n/netcdf4-python/netcdf4-python_1.4.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/n/netcdf4-python/netcdf4-python_1.4.2-1.dsc [following] --2019-06-22 00:45:08-- http://cdn-fastly.deb.debian.org/debian/pool/main/n/netcdf4-python/netcdf4-python_1.4.2-1.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2315 (2.3K) Saving to: ‘netcdf4-python_1.4.2-1.dsc’ 0K .. 100% 6.67M=0s 2019-06-22 00:45:08 (6.67 MB/s) - ‘netcdf4-python_1.4.2-1.dsc’ saved [2315/2315] Sat Jun 22 00:45:09 UTC 2019 I: netcdf4-python_1.4.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: netcdf4-python Binary: python-netcdf4, python3-netcdf4 Architecture: any Version: 1.4.2-1 Maintainer: Debian GIS Project Uploaders: Ross Gammon , Bas Couwenberg Homepage: http://unidata.github.io/netcdf4-python/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/debian-gis-team/netcdf4-python/ Vcs-Git: https://salsa.debian.org/debian-gis-team/netcdf4-python.git Build-Depends: debhelper (>= 9), dh-python, python-all-dev (>= 2.6.6-3~), python-cftime, python-setuptools, python-numpy, python3-all-dev, python3-cftime, python3-setuptools, python3-numpy, cython, cython3, libhdf5-dev, libnetcdf-dev (>= 1:4.4.0), netcdf-bin, chrpath Package-List: python-netcdf4 deb python optional arch=any python3-netcdf4 deb python optional arch=any Checksums-Sha1: d3d4c237052d972e087a5e92295149c787f5ca76 768940 netcdf4-python_1.4.2.orig.tar.gz 3e6eff1814134961e4df2f0614e773f2a0deac21 4656 netcdf4-python_1.4.2-1.debian.tar.xz Checksums-Sha256: d87ae1554b108a7bda490fe3b637de678846e5437bdd5b83844fada5347cff7d 768940 netcdf4-python_1.4.2.orig.tar.gz 699663c3ee1e61a576dfbc2a8e35e85304cd13658359a5283dde38d759408ea1 4656 netcdf4-python_1.4.2-1.debian.tar.xz Files: a168871124840f0224a63334f0bc64d7 768940 netcdf4-python_1.4.2.orig.tar.gz 250b2e8e174636c458060806ea698ac2 4656 netcdf4-python_1.4.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEgYLeQXBWQI1hRlDRZ1DxCuiNSvEFAlvRVIMACgkQZ1DxCuiN SvFdkw//SjlWEaeXqKC9AqLkhrUKrWrZxOh0/Mcz1m6WFdO0D+9ZnXaiaJCM2CvE 09ow+ixtTW6khYg/5vRHRZcoSo/ggZ1zxh6aVECTuOz489HuekZjEwCPssAFNEAK Rg/+ioFl8qTztPFBoAKW9fK6D16br8DZY8/o+azc1ghZJaAPea94skGorAPUxGN9 XXLp1lXndwf0Iiwel8hLrxSwk170lq6GjOBWQfSkSudFZNl97mpHw37QvFe/LFCG Q+SUT0ud6H7H26TdQnUe2xOSORg6trKGpBvovQ/QYkFIn1ucua/UCsRZAE5N6H0b QTSvyuVHMor/lr5UI3AgxqaLqc1IBzNdCpAjzj9EoelZJbk2OHK4hgDSkDcqa3Mv Xuoq2g9oMqaXbkzb4COs0qT1vwaZABnr/h1BnEydAZbkOJHCn7D8EC4o6vBf5P60 s5ElD3ANUVsNhXNw4dscSFg5VrhLcjAws5DgbYv2ZZ1xda9FUgWtWJbnPvAKgCOy j0zYbipYnlgmQKYf3C2QlZ9spaqDx5s4HeSjJviU2rYFgQZXdKzt3XGZuGGqJ5uT EIThSW2y/KaaJ+lWBaNMxnt9YwveB0RdMDBldL+h1fT6N9vBtDpZ6QwNeQw0mDX6 rwungp5RN+y6owHzUyZDORBqpoEgwwDAdyPzmn7xCkROfD+abBA= =fwfa -----END PGP SIGNATURE----- Sat Jun 22 00:45:09 UTC 2019 I: Checking whether the package is not for us Sat Jun 22 00:45:09 UTC 2019 I: Starting 1st build on remote node profitbricks-build12-i386.debian.net. Sat Jun 22 00:45:09 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build12-i386.debian.net. Sat Jun 22 01:10:50 UTC 2019 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 21 12:45:11 -12 2019 I: pbuilder-time-stamp: 1561164311 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [netcdf4-python_1.4.2-1.dsc] I: copying [./netcdf4-python_1.4.2.orig.tar.gz] I: copying [./netcdf4-python_1.4.2-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Oct 24 17:28:35 2018 -12 gpgv: using RSA key 8182DE417056408D614650D16750F10AE88D4AF1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./netcdf4-python_1.4.2-1.dsc dpkg-source: info: extracting netcdf4-python in netcdf4-python-1.4.2 dpkg-source: info: unpacking netcdf4-python_1.4.2.orig.tar.gz dpkg-source: info: unpacking netcdf4-python_1.4.2-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9), dh-python, python-all-dev (>= 2.6.6-3~), python-cftime, python-setuptools, python-numpy, python3-all-dev, python3-cftime, python3-setuptools, python3-numpy, cython, cython3, libhdf5-dev, libnetcdf-dev (>= 1:4.4.0), netcdf-bin, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev (>= 2.6.6-3~); however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-cftime; however: Package python-cftime is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-cftime; however: Package python3-cftime is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev (>= 1:4.4.0); however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on netcdf-bin; however: Package netcdf-bin is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnetcdf-dev{a} libnetcdf13{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} netcdf-bin{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-cftime{a} python-dev{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-cftime{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After unpacking 330 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2 [395 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2 [1383 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1c-1 [1532 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-1 [102 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2 [1935 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2 [305 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2 [590 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2 [1746 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2 [1751 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2 [330 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 cython i386 0.29.2-2 [1275 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 cython3 i386 0.29.2-2 [1297 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 54 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 55 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 56 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 57 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 59 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 60 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 61 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 62 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 63 http://cdn-fastly.deb.debian.org/debian buster/main i386 hdf5-helpers i386 1.10.4+repack-10 [35.2 kB] Get: 64 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec0 i386 1.0.2-1 [22.6 kB] Get: 65 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsz2 i386 1.0.2-1 [6720 B] Get: 66 http://cdn-fastly.deb.debian.org/debian buster/main i386 libaec-dev i386 1.0.2-1 [21.4 kB] Get: 67 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 68 http://cdn-fastly.deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 69 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 70 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 71 http://cdn-fastly.deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 72 http://cdn-fastly.deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 73 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 74 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1 [69.9 kB] Get: 75 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsasl2-2 i386 2.1.27+dfsg-1 [109 kB] Get: 76 http://cdn-fastly.deb.debian.org/debian buster/main i386 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get: 77 http://cdn-fastly.deb.debian.org/debian buster/main i386 libldap-2.4-2 i386 2.4.47+dfsg-3 [236 kB] Get: 78 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnghttp2-14 i386 1.36.0-2 [90.3 kB] Get: 79 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpsl5 i386 0.20.2-2 [54.4 kB] Get: 80 http://cdn-fastly.deb.debian.org/debian buster/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [64.2 kB] Get: 81 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssh2-1 i386 1.8.0-2.1 [147 kB] Get: 82 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcurl3-gnutls i386 7.64.0-4 [355 kB] Get: 83 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcurl4-gnutls-dev i386 7.64.0-4 [453 kB] Get: 84 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-1 [155 kB] Get: 85 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-103 i386 1.10.4+repack-10 [1310 kB] Get: 86 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-cpp-103 i386 1.10.4+repack-10 [155 kB] Get: 87 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 88 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 89 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg62-turbo-dev i386 1:1.5.2-2+b1 [226 kB] Get: 90 http://cdn-fastly.deb.debian.org/debian buster/main i386 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 91 http://cdn-fastly.deb.debian.org/debian buster/main i386 libhdf5-dev i386 1.10.4+repack-10 [2738 kB] Get: 92 http://cdn-fastly.deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 93 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnetcdf13 i386 1:4.6.2-1 [440 kB] Get: 94 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnetcdf-dev i386 1:4.6.2-1 [82.7 kB] Get: 95 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7 i386 2.7.16-2 [1059 kB] Get: 96 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2.7-dev i386 2.7.16-2 [31.4 MB] Get: 97 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython2-dev i386 2.7.16-1 [20.9 kB] Get: 98 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython-dev i386 2.7.16-1 [20.9 kB] Get: 99 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython-all-dev i386 2.7.16-1 [1068 B] Get: 100 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7 i386 3.7.3-2 [1507 kB] Get: 101 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7-dev i386 3.7.3-2 [47.7 MB] Get: 102 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3-dev i386 3.7.3-1 [20.2 kB] Get: 103 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3-all-dev i386 3.7.3-1 [1068 B] Get: 104 http://cdn-fastly.deb.debian.org/debian buster/main i386 netcdf-bin i386 1:4.6.2-1 [244 kB] Get: 105 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-all i386 2.7.16-1 [1044 B] Get: 106 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2.7-dev i386 2.7.16-2 [296 kB] Get: 107 http://cdn-fastly.deb.debian.org/debian buster/main i386 python2-dev i386 2.7.16-1 [1208 B] Get: 108 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-dev i386 2.7.16-1 [1184 B] Get: 109 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-all-dev i386 2.7.16-1 [1068 B] Get: 110 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-pkg-resources all 40.8.0-1 [182 kB] Get: 111 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-numpy i386 1:1.16.2-1 [2096 kB] Get: 112 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-cftime i386 1.0.3.4-1 [203 kB] Get: 113 http://cdn-fastly.deb.debian.org/debian buster/main i386 python-setuptools all 40.8.0-1 [382 kB] Get: 114 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-all i386 3.7.3-1 [1068 B] Get: 115 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3.7-dev i386 3.7.3-2 [509 kB] Get: 116 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-dev i386 3.7.3-1 [1260 B] Get: 117 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-all-dev i386 3.7.3-1 [1068 B] Get: 118 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 119 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-numpy i386 1:1.16.2-1 [2115 kB] Get: 120 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-cftime i386 1.0.3.4-1 [308 kB] Get: 121 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-setuptools all 40.8.0-1 [306 kB] Fetched 132 MB in 1min 38s (1352 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... 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Unpacking python3.7-minimal (3.7.3-2) ... Setting up libssl1.1:i386 (1.1.1c-1) ... Setting up libpython3.7-minimal:i386 (3.7.3-2) ... Setting up libexpat1:i386 (2.2.6-1) ... Setting up python3.7-minimal (3.7.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20983 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:i386. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2_i386.deb ... Unpacking libpython3.7-stdlib:i386 (3.7.3-2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2_i386.deb ... Unpacking python3.7 (3.7.3-2) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../libpython3-stdlib_3.7.3-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... 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Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../23-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../24-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../25-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../26-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... 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Selecting previously unselected package libaec0:i386. Preparing to unpack .../35-libaec0_1.0.2-1_i386.deb ... Unpacking libaec0:i386 (1.0.2-1) ... Selecting previously unselected package libsz2:i386. Preparing to unpack .../36-libsz2_1.0.2-1_i386.deb ... Unpacking libsz2:i386 (1.0.2-1) ... Selecting previously unselected package libaec-dev:i386. Preparing to unpack .../37-libaec-dev_1.0.2-1_i386.deb ... Unpacking libaec-dev:i386 (1.0.2-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../38-libgfortran5_8.3.0-6_i386.deb ... Unpacking libgfortran5:i386 (8.3.0-6) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../39-libblas3_3.8.0-2_i386.deb ... Unpacking libblas3:i386 (3.8.0-2) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../40-libkeyutils1_1.6-6_i386.deb ... Unpacking libkeyutils1:i386 (1.6-6) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../41-libkrb5support0_1.17-3_i386.deb ... Unpacking libkrb5support0:i386 (1.17-3) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../42-libk5crypto3_1.17-3_i386.deb ... Unpacking libk5crypto3:i386 (1.17-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../43-libkrb5-3_1.17-3_i386.deb ... Unpacking libkrb5-3:i386 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../44-libgssapi-krb5-2_1.17-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../45-libsasl2-modules-db_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../46-libsasl2-2_2.1.27+dfsg-1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-1) ... 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Setting up hdf5-helpers (1.10.4+repack-10) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libnghttp2-14:i386 (1.36.0-2) ... Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libldap-common (2.4.47+dfsg-3) ... Setting up libaec0:i386 (1.0.2-1) ... Setting up libicu63:i386 (63.1-6) ... Setting up libkrb5support0:i386 (1.17-3) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:i386 (2.2.6-1) ... Setting up libjpeg62-turbo:i386 (1:1.5.2-2+b1) ... Setting up libjpeg62-turbo-dev:i386 (1:1.5.2-2+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:i386 (1.17-3) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-1) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libssh2-1:i386 (1.8.0-2.1) ... Setting up libkrb5-3:i386 (1.17-3) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up chrpath (0.16-2+b1) ... Setting up libsz2:i386 (1.0.2-1) ... Setting up libreadline7:i386 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:i386 (3.7.3-2) ... Setting up libpython3.7:i386 (3.7.3-2) ... Setting up libtool (2.4.6-9) ... Setting up libpython3.7-dev:i386 (3.7.3-2) ... Setting up libaec-dev:i386 (1.0.2-1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:i386 (2.7.16-2) ... Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libhdf5-103:i386 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:i386 (1.17-3) ... Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2) ... Setting up libpython2.7:i386 (2.7.16-2) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libpython2.7-dev:i386 (2.7.16-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:i386 (3.7.3-1) ... Setting up python2.7 (2.7.16-2) ... Setting up libpython2-stdlib:i386 (2.7.16-1) ... Setting up libhdf5-cpp-103:i386 (1.10.4+repack-10) ... Setting up libcurl3-gnutls:i386 (7.64.0-4) ... Setting up libnetcdf13:i386 (1:4.6.2-1) ... Setting up python3 (3.7.3-1) ... Setting up libcurl4-gnutls-dev:i386 (7.64.0-4) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2) ... Setting up netcdf-bin (1:4.6.2-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up libpython3-all-dev:i386 (3.7.3-1) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up cython3 (0.29.2-2) ... Setting up libnetcdf-dev (1:4.6.2-1) ... Setting up libpython2-dev:i386 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up cython (0.29.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-all (3.7.3-1) ... Setting up python-all (2.7.16-1) ... Setting up libpython-dev:i386 (2.7.16-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python-dev (2.7.16-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libpython-all-dev:i386 (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-cftime (1.0.3.4-1) ... Setting up python3-cftime (1.0.3.4-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/netcdf4-python-1.4.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package netcdf4-python dpkg-buildpackage: info: source version 1.4.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bas Couwenberg dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean \ --with python2,python3 \ --buildsystem=pybuild \ --parallel dh_auto_clean -O--buildsystem=pybuild -O--parallel I: pybuild base:217: python2.7 setup.py clean reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version 4.6.2 running clean removing '/build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version b'4.6.2' running clean removing '/build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build' (and everything under it) setup.py:170: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser() 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_clean -O--buildsystem=pybuild -O--parallel debian/rules build dh build \ --with python2,python3 \ --buildsystem=pybuild \ --parallel dh_update_autotools_config -O--buildsystem=pybuild -O--parallel dh_auto_configure -O--buildsystem=pybuild -O--parallel I: pybuild base:217: python2.7 setup.py config reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version 4.6.2 using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib does not have cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running config I: pybuild base:217: python3.7 setup.py config reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version b'4.6.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib does not have cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running config setup.py:170: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser() dh_auto_build -O--buildsystem=pybuild -O--parallel I: pybuild base:217: /usr/bin/python setup.py build reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version 4.6.2 using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib does not have cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running build running build_py creating /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4 copying netCDF4/__init__.py -> /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4 copying netCDF4/utils.py -> /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4 running build_ext cythoning netCDF4/_netCDF4.pyx to netCDF4/_netCDF4.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/netcdf4-python-1.4.2/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'netCDF4._netCDF4' extension creating build creating build/temp.linux-i386-2.7 creating build/temp.linux-i386-2.7/netCDF4 i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -I/usr/lib/python2.7/dist-packages/numpy/core/include -Iinclude -I/usr/include/python2.7 -c netCDF4/_netCDF4.c -o build/temp.linux-i386-2.7/netCDF4/_netCDF4.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from netCDF4/_netCDF4.c:617: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': netCDF4/_netCDF4.c:7521:97: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_6, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c:7962:94: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__get_types': netCDF4/_netCDF4.c:9175:5: warning: '__pyx_v_typeids' may be used uninitialized in this function [-Wmaybe-uninitialized] free(__pyx_v_typeids); ^~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_7Dataset_1__init__': netCDF4/_netCDF4.c:86121:20: warning: '__pyx_v_ierr' may be used uninitialized in this function [-Wmaybe-uninitialized] return PyInt_FromLong((long) value); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:12362:7: note: '__pyx_v_ierr' was declared here int __pyx_v_ierr; ^~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_8Variable_1__init__': netCDF4/_netCDF4.c:29908:22: warning: '__pyx_v_dimids' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ierr = nc_def_var(__pyx_v_self->_grpid, __pyx_v_varname, __pyx_v_xtype, __pyx_v_ndims, __pyx_v_dimids, (&__pyx_v_self->_varid)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:28513:8: note: '__pyx_v_dimids' was declared here int *__pyx_v_dimids; ^~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RjiVGI/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/netCDF4/_netCDF4.o -L/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-R/usr/lib/i386-linux-gnu -Wl,-R/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-R/usr/lib/i386-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -lhdf5_hl -lhdf5 -o /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4/_netCDF4.so I: pybuild base:217: /usr/bin/python3 setup.py build reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version b'4.6.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib does not have cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running build running build_py creating /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4 copying netCDF4/__init__.py -> /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4 copying netCDF4/utils.py -> /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4 running build_ext cythoning netCDF4/_netCDF4.pyx to netCDF4/_netCDF4.c building 'netCDF4._netCDF4' extension creating build/temp.linux-i386-3.7 creating build/temp.linux-i386-3.7/netCDF4 i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -I/usr/lib/python3/dist-packages/numpy/core/include -Iinclude -I/usr/include/python3.7m -c netCDF4/_netCDF4.c -o build/temp.linux-i386-3.7/netCDF4/_netCDF4.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from netCDF4/_netCDF4.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': netCDF4/_netCDF4.c:7521:97: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_6, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c:7962:94: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c: In function '__pyx_pymod_exec__netCDF4': netCDF4/_netCDF4.c:80177:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__get_types': netCDF4/_netCDF4.c:9175:5: warning: '__pyx_v_typeids' may be used uninitialized in this function [-Wmaybe-uninitialized] free(__pyx_v_typeids); ^~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_7Dataset_1__init__': netCDF4/_netCDF4.c:526:40: warning: '__pyx_v_ierr' may be used uninitialized in this function [-Wmaybe-uninitialized] #define PyInt_FromLong PyLong_FromLong ^~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:12362:7: note: '__pyx_v_ierr' was declared here int __pyx_v_ierr; ^~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_8Variable_1__init__': netCDF4/_netCDF4.c:29908:22: warning: '__pyx_v_dimids' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ierr = nc_def_var(__pyx_v_self->_grpid, __pyx_v_varname, __pyx_v_xtype, __pyx_v_ndims, __pyx_v_dimids, (&__pyx_v_self->_varid)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:28513:8: note: '__pyx_v_dimids' was declared here int *__pyx_v_dimids; ^~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/netCDF4/_netCDF4.o -L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--enable-new-dtags,-R/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--enable-new-dtags,-R/usr/lib/i386-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -lhdf5_hl -lhdf5 -o /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so setup.py:170: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser() /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/netcdf4-python-1.4.2/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) debian/rules override_dh_auto_test make[1]: Entering directory '/build/netcdf4-python-1.4.2' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd test && NO_NET=1 {interpreter} run_all.py" dh_auto_test || echo "Ignoring test failures" I: pybuild base:217: cd test && NO_NET=1 python2.7 run_all.py .........E............................................................../build/netcdf4-python-1.4.2/test/tst_types.py:92: UserWarning: WARNING: missing_value not used since it cannot be safely cast to variable data type assert_array_equal(v3[:],-1*np.ones(n2dim,v3.dtype)) .............................. ====================================================================== ERROR: runTest (tst_diskless.DisklessTestCase) testing diskless file capability ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/netcdf4-python-1.4.2/test/tst_diskless.py", line 72, in runTest f = netCDF4.Dataset(self.file2) File "netCDF4/_netCDF4.pyx", line 2135, in netCDF4._netCDF4.Dataset.__init__ File "netCDF4/_netCDF4.pyx", line 1752, in netCDF4._netCDF4._ensure_nc_success IOError: [Errno -51] NetCDF: Unknown file format: '/tmp/tmpBNVXWf.nc' ---------------------------------------------------------------------- Ran 102 tests in 119.588s FAILED (errors=1) not running tst_unicode3.py ... not running tst_cdf5.py ... not running tst_dap.py ... netcdf4-python version: 1.4.2 HDF5 lib version: 1.10.4 netcdf lib version: 4.6.2 numpy version 1.16.2 cython version 0.29.2 foo_bar E: pybuild pybuild:341: test: plugin custom failed with: exit code=1: cd test && NO_NET=1 python2.7 run_all.py dh_auto_test: pybuild --test -i python{version} -p 2.7 returned exit code 13 Ignoring test failures make[1]: Leaving directory '/build/netcdf4-python-1.4.2' fakeroot debian/rules binary dh binary \ --with python2,python3 \ --buildsystem=pybuild \ --parallel dh_testroot -O--buildsystem=pybuild -O--parallel dh_prep -O--buildsystem=pybuild -O--parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/netcdf4-python-1.4.2' dh_auto_install I: pybuild base:217: /usr/bin/python setup.py install --root /build/netcdf4-python-1.4.2/debian/tmp reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version 4.6.2 using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib does not have cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running install running build running build_py running build_ext cythoning netCDF4/_netCDF4.pyx to netCDF4/_netCDF4.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/netcdf4-python-1.4.2/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'netCDF4._netCDF4' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -I/usr/lib/python2.7/dist-packages/numpy/core/include -Iinclude -I/usr/include/python2.7 -c netCDF4/_netCDF4.c -o build/temp.linux-i386-2.7/netCDF4/_netCDF4.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from netCDF4/_netCDF4.c:617: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': netCDF4/_netCDF4.c:7521:97: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_6, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c:7962:94: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__get_types': netCDF4/_netCDF4.c:9175:5: warning: '__pyx_v_typeids' may be used uninitialized in this function [-Wmaybe-uninitialized] free(__pyx_v_typeids); ^~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_7Dataset_1__init__': netCDF4/_netCDF4.c:86121:20: warning: '__pyx_v_ierr' may be used uninitialized in this function [-Wmaybe-uninitialized] return PyInt_FromLong((long) value); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:12362:7: note: '__pyx_v_ierr' was declared here int __pyx_v_ierr; ^~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_8Variable_1__init__': netCDF4/_netCDF4.c:29908:22: warning: '__pyx_v_dimids' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ierr = nc_def_var(__pyx_v_self->_grpid, __pyx_v_varname, __pyx_v_xtype, __pyx_v_ndims, __pyx_v_dimids, (&__pyx_v_self->_varid)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:28513:8: note: '__pyx_v_dimids' was declared here int *__pyx_v_dimids; ^~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RjiVGI/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-2.7/netCDF4/_netCDF4.o -L/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-R/usr/lib/i386-linux-gnu -Wl,-R/usr/lib/i386-linux-gnu/hdf5/serial -Wl,-R/usr/lib/i386-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -lhdf5_hl -lhdf5 -o /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4/_netCDF4.so running install_lib creating /build/netcdf4-python-1.4.2/debian/tmp creating /build/netcdf4-python-1.4.2/debian/tmp/usr creating /build/netcdf4-python-1.4.2/debian/tmp/usr/lib creating /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7 creating /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages creating /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4/__init__.pyc -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4/utils.pyc -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4/__init__.py -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4/utils.py -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython2_2.7/build/netCDF4/_netCDF4.so -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4 byte-compiling /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4/__init__.py to __init__.pyc byte-compiling /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4/utils.py to utils.pyc running install_egg_info running egg_info creating netCDF4.egg-info writing requirements to netCDF4.egg-info/requires.txt writing netCDF4.egg-info/PKG-INFO writing top-level names to netCDF4.egg-info/top_level.txt writing dependency_links to netCDF4.egg-info/dependency_links.txt writing entry points to netCDF4.egg-info/entry_points.txt writing manifest file 'netCDF4.egg-info/SOURCES.txt' reading manifest file 'netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'appveyor.yml' writing manifest file 'netCDF4.egg-info/SOURCES.txt' Copying netCDF4.egg-info to /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python2.7/dist-packages/netCDF4-1.4.2.egg-info Skipping SOURCES.txt running install_scripts Installing ncinfo script to /build/netcdf4-python-1.4.2/debian/tmp/usr/bin Installing nc4tonc3 script to /build/netcdf4-python-1.4.2/debian/tmp/usr/bin Installing nc3tonc4 script to /build/netcdf4-python-1.4.2/debian/tmp/usr/bin I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/netcdf4-python-1.4.2/debian/tmp reading from setup.cfg... using nc-config ... HDF5 library version: 1.10.4 found in None using netcdf library version b'4.6.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib does not have cdf-5 format capability netcdf lib does not have netcdf4 parallel functions running install running build running build_py running build_ext cythoning netCDF4/_netCDF4.pyx to netCDF4/_netCDF4.c building 'netCDF4._netCDF4' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -I/usr/lib/python3/dist-packages/numpy/core/include -Iinclude -I/usr/include/python3.7m -c netCDF4/_netCDF4.c -o build/temp.linux-i386-3.7/netCDF4/_netCDF4.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from netCDF4/_netCDF4.c:617: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': netCDF4/_netCDF4.c:7521:97: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_6, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c:7962:94: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from netCDF4/_netCDF4.c:615: /usr/include/netcdf.h:1029:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ netCDF4/_netCDF4.c: In function '__pyx_pymod_exec__netCDF4': netCDF4/_netCDF4.c:80177:3: warning: returning 'void *' from a function with return type 'int' makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__get_types': netCDF4/_netCDF4.c:9175:5: warning: '__pyx_v_typeids' may be used uninitialized in this function [-Wmaybe-uninitialized] free(__pyx_v_typeids); ^~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_7Dataset_1__init__': netCDF4/_netCDF4.c:526:40: warning: '__pyx_v_ierr' may be used uninitialized in this function [-Wmaybe-uninitialized] #define PyInt_FromLong PyLong_FromLong ^~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:12362:7: note: '__pyx_v_ierr' was declared here int __pyx_v_ierr; ^~~~~~~~~~~~ netCDF4/_netCDF4.c: In function '__pyx_pw_7netCDF4_8_netCDF4_8Variable_1__init__': netCDF4/_netCDF4.c:29908:22: warning: '__pyx_v_dimids' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ierr = nc_def_var(__pyx_v_self->_grpid, __pyx_v_varname, __pyx_v_xtype, __pyx_v_ndims, __pyx_v_dimids, (&__pyx_v_self->_varid)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netCDF4/_netCDF4.c:28513:8: note: '__pyx_v_dimids' was declared here int *__pyx_v_dimids; ^~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/netcdf4-python-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.7/netCDF4/_netCDF4.o -L/usr/lib/i386-linux-gnu/hdf5/serial -L/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--enable-new-dtags,-R/usr/lib/i386-linux-gnu/hdf5/serial -Wl,--enable-new-dtags,-R/usr/lib/i386-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -lhdf5_hl -lhdf5 -o /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so running install_lib creating /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7 creating /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages creating /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4/__init__.py -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages/netCDF4 copying /build/netcdf4-python-1.4.2/.pybuild/cpython3_3.7/build/netCDF4/utils.py -> /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages/netCDF4 byte-compiling /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages/netCDF4/__init__.py to __init__.cpython-37.pyc byte-compiling /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages/netCDF4/utils.py to utils.cpython-37.pyc running install_egg_info running egg_info writing netCDF4.egg-info/PKG-INFO writing dependency_links to netCDF4.egg-info/dependency_links.txt writing entry points to netCDF4.egg-info/entry_points.txt writing requirements to netCDF4.egg-info/requires.txt writing top-level names to netCDF4.egg-info/top_level.txt reading manifest file 'netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' setup.py:170: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead. config = configparser.SafeConfigParser() /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/netcdf4-python-1.4.2/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: no files found matching 'appveyor.yml' writing manifest file 'netCDF4.egg-info/SOURCES.txt' Copying netCDF4.egg-info to /build/netcdf4-python-1.4.2/debian/tmp/usr/lib/python3.7/dist-packages/netCDF4-1.4.2.egg-info Skipping SOURCES.txt running install_scripts Installing nc3tonc4 script to /build/netcdf4-python-1.4.2/debian/tmp/usr/bin Installing nc4tonc3 script to /build/netcdf4-python-1.4.2/debian/tmp/usr/bin Installing ncinfo script to /build/netcdf4-python-1.4.2/debian/tmp/usr/bin # removing embedded rpath in libraries find /build/netcdf4-python-1.4.2/debian/*/usr/lib -name "*.so*" -type f -exec chrpath --delete {} \; make[1]: Leaving directory '/build/netcdf4-python-1.4.2' debian/rules override_dh_install make[1]: Entering directory '/build/netcdf4-python-1.4.2' dh_install --list-missing dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. make[1]: Leaving directory '/build/netcdf4-python-1.4.2' dh_installdocs -O--buildsystem=pybuild -O--parallel dh_installchangelogs -O--buildsystem=pybuild -O--parallel dh_installexamples -O--buildsystem=pybuild -O--parallel dh_installman -O--buildsystem=pybuild -O--parallel debian/rules override_dh_python2 make[1]: Entering directory '/build/netcdf4-python-1.4.2' dh_python2 -ppython-netcdf4 I: dh_python2 fs:343: renaming _netCDF4.so to _netCDF4.i386-linux-gnu.so dh_numpy -ppython-netcdf4 make[1]: Leaving directory '/build/netcdf4-python-1.4.2' debian/rules override_dh_python3 make[1]: Entering directory '/build/netcdf4-python-1.4.2' dh_python3 -ppython3-netcdf4 dh_numpy3 -ppython3-netcdf4 make[1]: Leaving directory '/build/netcdf4-python-1.4.2' dh_installinit -O--buildsystem=pybuild -O--parallel dh_perl -O--buildsystem=pybuild -O--parallel dh_link -O--buildsystem=pybuild -O--parallel dh_strip_nondeterminism -O--buildsystem=pybuild -O--parallel dh_compress -O--buildsystem=pybuild -O--parallel dh_fixperms -O--buildsystem=pybuild -O--parallel dh_missing -O--buildsystem=pybuild -O--parallel dh_strip -O--buildsystem=pybuild -O--parallel dh_makeshlibs -O--buildsystem=pybuild -O--parallel dh_shlibdeps -O--buildsystem=pybuild -O--parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-netcdf4/usr/lib/python3/dist-packages/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so was not linked against libhdf5_serial_hl.so.100 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-netcdf4/usr/lib/python3/dist-packages/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so was not linked against libcurl-gnutls.so.4 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-netcdf4/usr/lib/python3/dist-packages/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-netcdf4/usr/lib/python3/dist-packages/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-netcdf4/usr/lib/python3/dist-packages/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so was not linked against libm.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-netcdf4/usr/lib/python3/dist-packages/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-netcdf4/usr/lib/python3/dist-packages/netCDF4/_netCDF4.cpython-37m-i386-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-netcdf4/usr/lib/python2.7/dist-packages/netCDF4/_netCDF4.i386-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-netcdf4/usr/lib/python2.7/dist-packages/netCDF4/_netCDF4.i386-linux-gnu.so was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-netcdf4/usr/lib/python2.7/dist-packages/netCDF4/_netCDF4.i386-linux-gnu.so was not linked against libcurl-gnutls.so.4 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-netcdf4/usr/lib/python2.7/dist-packages/netCDF4/_netCDF4.i386-linux-gnu.so was not linked against libm.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-netcdf4/usr/lib/python2.7/dist-packages/netCDF4/_netCDF4.i386-linux-gnu.so was not linked against libhdf5_serial_hl.so.100 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-netcdf4/usr/lib/python2.7/dist-packages/netCDF4/_netCDF4.i386-linux-gnu.so was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-netcdf4/usr/lib/python2.7/dist-packages/netCDF4/_netCDF4.i386-linux-gnu.so was not linked against libsz.so.2 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=pybuild -O--parallel dh_gencontrol -O--buildsystem=pybuild -O--parallel dpkg-gencontrol: warning: package python-netcdf4: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-netcdf4: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-netcdf4: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-netcdf4: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-netcdf4: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-netcdf4: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-netcdf4: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-netcdf4: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild -O--parallel dh_builddeb -O--buildsystem=pybuild -O--parallel dpkg-deb: building package 'python-netcdf4-dbgsym' in '../python-netcdf4-dbgsym_1.4.2-1_i386.deb'. dpkg-deb: building package 'python3-netcdf4-dbgsym' in '../python3-netcdf4-dbgsym_1.4.2-1_i386.deb'. dpkg-deb: building package 'python3-netcdf4' in '../python3-netcdf4_1.4.2-1_i386.deb'. dpkg-deb: building package 'python-netcdf4' in '../python-netcdf4_1.4.2-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../netcdf4-python_1.4.2-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15345 and its subdirectories I: Current time: Fri Jun 21 13:10:50 -12 2019 I: pbuilder-time-stamp: 1561165850 Sat Jun 22 01:10:51 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Sat Jun 22 01:10:51 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Sat Jun 22 01:14:51 UTC 2019 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Sat Jun 22 01:14:51 UTC 2019 I: netcdf4-python_1.4.2-1_i386.changes: Format: 1.8 Date: Thu, 25 Oct 2018 07:11:13 +0200 Source: netcdf4-python Binary: python-netcdf4 python-netcdf4-dbgsym python3-netcdf4 python3-netcdf4-dbgsym Architecture: i386 Version: 1.4.2-1 Distribution: unstable Urgency: medium Maintainer: Debian GIS Project Changed-By: Bas Couwenberg Description: python-netcdf4 - Python interface to the netCDF4 (network Common Data Form) librar python3-netcdf4 - Python 3 interface to the netCDF4 (network Common Data Form) libr Changes: netcdf4-python (1.4.2-1) unstable; urgency=medium . * New upstream release. * Update watch file to limit matches to archive path. * Bump Standards-Version to 4.2.1, no changes. Checksums-Sha1: e201e067e2388d7a2eb88fedf35ca4b87de04cfd 7876 netcdf4-python_1.4.2-1_i386.buildinfo 50ee588c984843e96c63ef7fc21917e6c72d6516 1095828 python-netcdf4-dbgsym_1.4.2-1_i386.deb 1bd2858c24476979e7e5708eb42555e7ca96453a 409500 python-netcdf4_1.4.2-1_i386.deb 3ec30d8bcedfdaf68291aa49b8debaf105531fab 1416024 python3-netcdf4-dbgsym_1.4.2-1_i386.deb eaabfbd276794fab33aaacfd0d607b30665f83a5 427384 python3-netcdf4_1.4.2-1_i386.deb Checksums-Sha256: fd80255994d5da812de42fd6db1d821779bc905858aa6a98bee1c57b8f2c38dd 7876 netcdf4-python_1.4.2-1_i386.buildinfo a577f1913fd9597fabb28f11fd6f06ea0e79e3c2d81e4321dc9add6c7ad84286 1095828 python-netcdf4-dbgsym_1.4.2-1_i386.deb 2c5b96861e633c44d4e90c71585e7dabf5b1642e2fbf94c74c481e9387e0f0d1 409500 python-netcdf4_1.4.2-1_i386.deb 210078bebbee604f73a1ea54d48c9bf91d32487354a095fb0f749ee1a3a45e60 1416024 python3-netcdf4-dbgsym_1.4.2-1_i386.deb 62667978cdf3f305a37a3578664ccf70c351fcac448b25a77ad621500201332e 427384 python3-netcdf4_1.4.2-1_i386.deb Files: e8a9728569b55ed1559328e6a1d58bc0 7876 science optional netcdf4-python_1.4.2-1_i386.buildinfo 10aa6ae1e418758e2082453a7ed6fd71 1095828 debug optional python-netcdf4-dbgsym_1.4.2-1_i386.deb 6406cfdcedcba8b90ad28b6e86afecf4 409500 python optional python-netcdf4_1.4.2-1_i386.deb 2428dceae9b1649688c7b51b7152f44d 1416024 debug optional python3-netcdf4-dbgsym_1.4.2-1_i386.deb 42c7e9a61ed8402f71f46ea9afd6778b 427384 python optional python3-netcdf4_1.4.2-1_i386.deb Sat Jun 22 01:14:53 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Hz43Rz3VF4/netcdf4-python_1.4.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Hz43Rz3VF4/netcdf4-python_1.4.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Hz43Rz3VF4/netcdf4-python_1.4.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Hz43Rz3VF4/b1/netcdf4-python_1.4.2-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.Hz43Rz3VF4/b2/netcdf4-python_1.4.2-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.250s) 0.250s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 10 calls diffoscope.comparators.binary.FilesystemFile Sat Jun 22 01:14:54 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Sat Jun 22 01:14:54 UTC 2019 I: netcdf4-python from buster built successfully and reproducibly on i386. Sat Jun 22 01:14:56 UTC 2019 I: Submitting .buildinfo files to external archives: Sat Jun 22 01:14:56 UTC 2019 I: Submitting 12K b1/netcdf4-python_1.4.2-1_i386.buildinfo.asc Sat Jun 22 01:15:25 UTC 2019 I: Submitting 12K b2/netcdf4-python_1.4.2-1_i386.buildinfo.asc Sat Jun 22 01:15:55 UTC 2019 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Sat Jun 22 01:15:55 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 22 01:15:55 UTC 2019 I: Done submitting .buildinfo files. Sat Jun 22 01:15:55 UTC 2019 I: Removing signed netcdf4-python_1.4.2-1_i386.buildinfo.asc files: removed './b1/netcdf4-python_1.4.2-1_i386.buildinfo.asc' removed './b2/netcdf4-python_1.4.2-1_i386.buildinfo.asc'