Sat Jun 29 17:06:35 UTC 2019 I: starting to build muscle/buster/i386 on jenkins on '2019-06-29 17:06' Sat Jun 29 17:06:35 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/723/console.log Sat Jun 29 17:06:35 UTC 2019 I: Downloading source for buster/muscle=1:3.8.1551-2 --2019-06-29 17:06:35-- http://deb.debian.org/debian/pool/main/m/muscle/muscle_3.8.1551-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/m/muscle/muscle_3.8.1551-2.dsc [following] --2019-06-29 17:06:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/muscle/muscle_3.8.1551-2.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2027 (2.0K) Saving to: ‘muscle_3.8.1551-2.dsc’ 0K . 100% 99.5M=0s 2019-06-29 17:06:35 (99.5 MB/s) - ‘muscle_3.8.1551-2.dsc’ saved [2027/2027] Sat Jun 29 17:06:36 UTC 2019 I: muscle_3.8.1551-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: muscle Binary: muscle Architecture: any Version: 1:3.8.1551-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://www.drive5.com/muscle/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/muscle Vcs-Git: https://salsa.debian.org/med-team/muscle.git Testsuite: autopkgtest Build-Depends: debhelper (>= 12~) Package-List: muscle deb science optional arch=any Checksums-Sha1: 9d9d56e5f064686491a3ef348cd565b1fc1ff3d3 190019 muscle_3.8.1551.orig.tar.gz 47af506831b23b55ebb759c50ffa0dacfb70d8b1 23260 muscle_3.8.1551-2.debian.tar.xz Checksums-Sha256: c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e 190019 muscle_3.8.1551.orig.tar.gz ed3e3e76160ada99314491cffcaaa404b23d357400d6e2a80ada07d7ae0ad903 23260 muscle_3.8.1551-2.debian.tar.xz Files: 1b7c9661f275a82d3cf708f923736bf8 190019 muscle_3.8.1551.orig.tar.gz e7b7ea8ed09c5eed09e844b87e77f227 23260 muscle_3.8.1551-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxwZ/kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF4yg/+KrKM/0M5sULe9yWYqhWhvkUtWpZSSfCc rXr6ANARC9XFGLsueYrXvBAYRk8ryZwfrORL9N9ETDJP0NJDT9eWIrmjFLCdvwvu XGzuxaobeQBWLFXRkGwF5ie3MlwcPHlsdvrzrZyrLBbs3bSkUxJnDXULbzdWmKsm gMGTVNFuStdQxBPUsZLmHvYw7HXiGQIE25LNEqeFmAKcKrpl/r1NkFu4bxxVAasL 9d/hX/2oMPwgvs+8OOx/YImdQIoqecqu4Vc2Vqs8IY75fXHuRqE8xnenrqXmRgWi 5JkY4QSmn+jG1SH9TjoQUAUiTJywy+B/3Lhj8kFMhuPuMw06YiFGcYciKdPe+hL+ 7G4QvtYQmOAxtlrHs0InSzDJnndubhAV5r0+H2pUz+ny8hj+kx7yYTbEXJ/BmPQR LrCE1QwXCh3inkfLUWZyektHer/87gLWxJCxyLujimVRXexJ5n622aVslJswPOoV 6X0bgOge6ZE6ETEYvNRWbemQYj+kQifG8dJQZiUOPBn23nul5JcVaavRnWvt7k1p UzwUEksqlGvjpMlOpoMDEQct32q2N/jp4Q4gADYdxKZp/apgyDQeSKIUMcpZhFMn EfyZH5ERX7LUhPwn3WxSnsXKEmRrgqv5HNo/HwfxHLQLeAs7mOjdPAJWhxajWDyM U1oXoFVcHGc= =qqB7 -----END PGP SIGNATURE----- Sat Jun 29 17:06:36 UTC 2019 I: Checking whether the package is not for us Sat Jun 29 17:06:36 UTC 2019 I: Starting 1st build on remote node profitbricks-build16-i386.debian.net. Sat Jun 29 17:06:36 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build16-i386.debian.net. Sat Jun 29 17:07:00 UTC 2019 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 31 11:29:38 -12 2020 I: pbuilder-time-stamp: 1596238178 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [muscle_3.8.1551-2.dsc] I: copying [./muscle_3.8.1551.orig.tar.gz] I: copying [./muscle_3.8.1551-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 22 09:22:01 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./muscle_3.8.1551-2.dsc dpkg-source: info: extracting muscle in muscle-3.8.1551 dpkg-source: info: unpacking muscle_3.8.1551.orig.tar.gz dpkg-source: info: unpacking muscle_3.8.1551-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Fix_FTBFS_Hurd.patch dpkg-source: info: applying makefile.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.3 MB in 5s (3825 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/muscle-3.8.1551/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package muscle dpkg-buildpackage: info: source version 1:3.8.1551-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/muscle-3.8.1551' dh_auto_build -- 'GPP=$(CXX)' make -j18 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/muscle-3.8.1551' g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline 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-c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 progress.cpp -o progress.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 progressivealign.cpp -o progressivealign.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 pwpath.cpp -o pwpath.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 readmx.cpp -o readmx.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 realigndiffs.cpp -o realigndiffs.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 realigndiffse.cpp -o realigndiffse.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 refine.cpp -o refine.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 refinehoriz.cpp -o refinehoriz.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 refinesubfams.cpp -o refinesubfams.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 refinetree.cpp -o refinetree.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 refinetreee.cpp -o refinetreee.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 refinevert.cpp -o refinevert.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 refinew.cpp -o refinew.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 savebest.cpp -o savebest.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 scoredist.cpp -o scoredist.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 scoregaps.cpp -o scoregaps.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 scorehistory.cpp -o scorehistory.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 scorepp.cpp -o scorepp.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 seq.cpp -o seq.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 seqvect.cpp -o seqvect.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setblosumweights.cpp -o setblosumweights.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setgscweights.cpp -o setgscweights.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setnewhandler.cpp -o setnewhandler.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 spfast.cpp -o spfast.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 sptest.cpp -o sptest.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 stabilize.cpp -o stabilize.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 subfam.cpp -o subfam.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 subfams.cpp -o subfams.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 sw.cpp -o sw.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 termgaps.cpp -o termgaps.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 textfile.cpp -o textfile.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 threewaywt.cpp -o threewaywt.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tomhydro.cpp -o tomhydro.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 traceback.cpp -o traceback.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tracebackopt.cpp -o tracebackopt.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tracebacksw.cpp -o tracebacksw.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 treefrommsa.cpp -o treefrommsa.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 typetostr.cpp -o typetostr.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 upgma2.cpp -o upgma2.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 usage.cpp -o usage.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 validateids.cpp -o validateids.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 vtml2.cpp -o vtml2.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 writescorefile.cpp -o writescorefile.o g++ -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 -o muscle aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o aln.o alpha.o anchors.o bittraceback.o blosum62.o blosumla.o clust.o cluster.o clwwt.o color.o cons.o diaglist.o diffobjscore.o diffpaths.o difftrees.o difftreese.o distcalc.o distfunc.o distpwkimura.o domuscle.o dosp.o dpreglist.o drawtree.o edgelist.o enumopts.o enumtostr.o estring.o fasta.o fasta2.o fastclust.o fastdist.o fastdistjones.o fastdistkbit.o fastdistkmer.o fastdistmafft.o fastdistnuc.o fastscorepath2.o finddiags.o finddiagsn.o glbalign.o glbalign352.o glbaligndiag.o glbalignle.o glbalignsimple.o glbalignsp.o glbalignspn.o glbalignss.o glbalndimer.o globals.o globalslinux.o globalsosx.o globalsother.o globalswin32.o gonnet.o henikoffweight.o henikoffweightpb.o html.o hydro.o intmath.o local.o main.o makerootmsa.o makerootmsab.o maketree.o mhack.o mpam200.o msa.o msa2.o msadistkimura.o msf.o muscle.o muscleout.o nucmx.o nwdasimple.o nwdasimple2.o nwdasmall.o nwrec.o nwsmall.o objscore.o objscore2.o objscoreda.o onexception.o options.o outweights.o pam200mafft.o params.o phy.o phy2.o phy3.o phy4.o phyfromclust.o phyfromfile.o physeq.o phytofile.o posgap.o ppscore.o profdb.o profile.o profilefrommsa.o progalign.o progress.o progressivealign.o pwpath.o readmx.o realigndiffs.o realigndiffse.o refine.o refinehoriz.o refinesubfams.o refinetree.o refinetreee.o refinevert.o refinew.o savebest.o scoredist.o scoregaps.o scorehistory.o scorepp.o seq.o seqvect.o setblosumweights.o setgscweights.o setnewhandler.o spfast.o sptest.o stabilize.o subfam.o subfams.o sw.o termgaps.o textfile.o threewaywt.o tomhydro.o traceback.o tracebackopt.o tracebacksw.o treefrommsa.o typetostr.o upgma2.o usage.o validateids.o vtml2.o writescorefile.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/muscle-3.8.1551' make[1]: Leaving directory '/build/muscle-3.8.1551' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'muscle' in '../muscle_3.8.1551-2_i386.deb'. dpkg-deb: building package 'muscle-dbgsym' in '../muscle-dbgsym_3.8.1551-2_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../muscle_3.8.1551-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/46905 and its subdirectories I: Current time: Fri Jul 31 11:30:01 -12 2020 I: pbuilder-time-stamp: 1596238201 Sat Jun 29 17:07:01 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build12-i386.debian.net. Sat Jun 29 17:07:01 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build12-i386.debian.net. Sat Jun 29 17:13:12 UTC 2019 I: Deleting $TMPDIR on profitbricks-build12-i386.debian.net. Sat Jun 29 17:13:12 UTC 2019 I: muscle_3.8.1551-2_i386.changes: Format: 1.8 Date: Fri, 22 Feb 2019 22:13:23 +0100 Source: muscle Binary: muscle muscle-dbgsym Architecture: i386 Version: 1:3.8.1551-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: muscle - Multiple alignment program of protein sequences Closes: 922994 Changes: muscle (1:3.8.1551-2) unstable; urgency=medium . [ Helmut Grohne ] * Fix FTCBFS: Pass C++ compilers as GPP. (Closes: #922994) . [ Andreas Tille ] * Delete outdated README.Debian * debhelper 12 * Standards-Version: 4.3.0 Checksums-Sha1: 02815df92a2442309679e5feadab7e83b52d3f6f 711136 muscle-dbgsym_3.8.1551-2_i386.deb 424c7ea75c3955797532079593f14be05b12bf75 4462 muscle_3.8.1551-2_i386.buildinfo 4d3260c24c41fc94cd7d05326a71413d8ade432f 231660 muscle_3.8.1551-2_i386.deb Checksums-Sha256: 958e6e850c443af0a1d51bcc56bd4f4f63cf1a5759e48f52e65740325444b1f1 711136 muscle-dbgsym_3.8.1551-2_i386.deb bda6dc88c8db2b448fed41866f9cf6862c9eb1f6178973d7f67d01ea45931a33 4462 muscle_3.8.1551-2_i386.buildinfo 6e89f01f35d6f0312b650b10262d0b17c8ccf47095e6bb7d282121e7ea0b5599 231660 muscle_3.8.1551-2_i386.deb Files: f9ab08b50ddc1ccc3f4cdf86a723be40 711136 debug optional muscle-dbgsym_3.8.1551-2_i386.deb 8b99fdce59dacfc8065469871b2ca478 4462 science optional muscle_3.8.1551-2_i386.buildinfo a41a33c219d776326ec44b35052aa8fb 231660 science optional muscle_3.8.1551-2_i386.deb Sat Jun 29 17:13:14 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.VPEG0s5bGj/muscle_3.8.1551-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.VPEG0s5bGj/muscle_3.8.1551-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.VPEG0s5bGj/muscle_3.8.1551-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.VPEG0s5bGj/b1/muscle_3.8.1551-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.VPEG0s5bGj/b2/muscle_3.8.1551-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.395s) 0.395s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.210s) 0.210s 10 calls diffoscope.comparators.binary.FilesystemFile Sat Jun 29 17:13:16 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Sat Jun 29 17:13:16 UTC 2019 I: muscle from buster built successfully and reproducibly on i386. Sat Jun 29 17:13:19 UTC 2019 I: Submitting .buildinfo files to external archives: Sat Jun 29 17:13:19 UTC 2019 I: Submitting 8.0K b1/muscle_3.8.1551-2_i386.buildinfo.asc Sat Jun 29 17:13:20 UTC 2019 I: Submitting 8.0K b2/muscle_3.8.1551-2_i386.buildinfo.asc Sat Jun 29 17:13:21 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 29 17:13:21 UTC 2019 I: Done submitting .buildinfo files. Sat Jun 29 17:13:21 UTC 2019 I: Removing signed muscle_3.8.1551-2_i386.buildinfo.asc files: removed './b1/muscle_3.8.1551-2_i386.buildinfo.asc' removed './b2/muscle_3.8.1551-2_i386.buildinfo.asc'