Wed Sep 1 10:15:17 UTC 2021 I: starting to build epcr/buster/i386 on jenkins on '2021-09-01 10:14' Wed Sep 1 10:15:17 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/18991/console.log Wed Sep 1 10:15:17 UTC 2021 I: Downloading source for buster/epcr=2.3.12-1-7 --2021-09-01 10:15:18-- http://deb.debian.org/debian/pool/main/e/epcr/epcr_2.3.12-1-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1995 (1.9K) Saving to: ‘epcr_2.3.12-1-7.dsc’ 0K . 100% 90.4M=0s 2021-09-01 10:15:18 (90.4 MB/s) - ‘epcr_2.3.12-1-7.dsc’ saved [1995/1995] Wed Sep 1 10:15:18 UTC 2021 I: epcr_2.3.12-1-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: epcr Binary: ncbi-epcr Architecture: any Version: 2.3.12-1-7 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: https://www.ncbi.nlm.nih.gov/tools/epcr/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/epcr Vcs-Git: https://salsa.debian.org/med-team/epcr.git Build-Depends: debhelper (>= 11~) Package-List: ncbi-epcr deb science optional arch=any Checksums-Sha1: b63d03b5bd9e25989c0da27aa56c990057636b34 76840 epcr_2.3.12-1.orig.tar.gz 4a7b854698f681c222d8b6929e7cc89ef1de87d1 9484 epcr_2.3.12-1-7.debian.tar.xz Checksums-Sha256: 92613a09cbba3eab66916488063b56e2a3b50a82e5308b1731b6b90d232b8275 76840 epcr_2.3.12-1.orig.tar.gz 83984f0348c47ff1e512ff8a95071bc16e5f8604f7a2994a8230a027b3ca0cd4 9484 epcr_2.3.12-1-7.debian.tar.xz Files: 516b111f78769af24393e61b0bf7fd80 76840 epcr_2.3.12-1.orig.tar.gz e1be18aece3d712d0957d4d01b14b434 9484 epcr_2.3.12-1-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxlb2wRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH6fQ//Ui3NowjwI6U3DEofkoDzthcbVJ092W6W Sw59F8xkTeVRqeILTMOqzFzyQaWAJfGClxxwyVGruSiHBbOT0wULIfXnDix4/b3F t62hQsY18l76E/6rWG8+bOYcAZf/IwQsrAuhEj1jI0SynqRZsMQXF3HsZLPMIZf8 8SNAnbgvLzZcQ8W9I6xpEA8Opub2d+zluKfpCCy+rcGBJmMUfLyPh3chgQhZwhLN IKWdBXB3Jw7xzYlrk/DyejgkRRin8tXZdZ/oKY4JBgNyEknj1JMMZVuxpISEGfZK DG6Kdi3giOUJzyeBehMNdFNN4tM9v1jBhu1lCiPjliJf/McsH/ZFWOB5oILv2gzL BylPj8Cjh8V1hp1qixjQfopxLBCiT13d4B+vZvkpFKVGizk0FUWluhT07lIswEJM 329HgCPC7Rorldo/RrFCNyOEcdsXMNWJUxJps1JE/KVozQG7CTfmzRdYNaHphS5p 5RxXhfVpKwmuhj7i8kL3oqMqD1teX6Jlgsrwux4Q8Eh6DmsTWDSBAQyHdo6Ccqcg TECdKX6eT4HxT5x+U7dRamz5FWt813VVcustDxfcItyQiK2YSJYVPI5mSLfTh+LU FDWx4jsMCv9VesDjZecswVBgFWuZdiMWtk2IpoKrGWep1rbI6NS8ppJyTK0DOo2H epzcSLlpL50= =btdP -----END PGP SIGNATURE----- Wed Sep 1 10:15:18 UTC 2021 I: Checking whether the package is not for us Wed Sep 1 10:15:18 UTC 2021 I: Starting 1st build on remote node ionos12-i386.debian.net. Wed Sep 1 10:15:18 UTC 2021 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Wed Sep 1 10:16:13 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 31 22:15:19 -12 2021 I: pbuilder-time-stamp: 1630491319 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [epcr_2.3.12-1-7.dsc] I: copying [./epcr_2.3.12-1.orig.tar.gz] I: copying [./epcr_2.3.12-1-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Feb 14 01:38:52 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./epcr_2.3.12-1-7.dsc dpkg-source: info: extracting epcr in epcr-2.3.12-1 dpkg-source: info: unpacking epcr_2.3.12-1.orig.tar.gz dpkg-source: info: unpacking epcr_2.3.12-1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_clean_target.patch dpkg-source: info: applying fix_header_location.patch dpkg-source: info: applying ensure_build_options.patch dpkg-source: info: applying use-dpkg-buildflags.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4834/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='90b8d1a2269f461e966e3890cdd67f86' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4834' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mjwimZ3YoH/pbuilderrc_VeiZ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mjwimZ3YoH/b1 --logfile b1/build.log epcr_2.3.12-1-7.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 5.10.0-8-686-pae #1 SMP Debian 5.10.46-4 (2021-08-03) i686 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash -rwxr-xr-x 1 root root 120676 Feb 28 2019 date -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd -rwxr-xr-x 1 root root 100620 Feb 28 2019 df -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 34532 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln -rwxr-xr-x 1 root root 55400 Jul 26 2018 login -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 9 2019 more -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 20:26 sh -> dash -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty -rwsr-xr-x 1 root root 71072 Jan 9 2019 su -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch -rwxr-xr-x 1 root root 34532 Feb 28 2019 true -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/4834/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2+deb10u1 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3+deb10u1 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u2 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u3 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+deb10u2 [723 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.4 MB in 0s (47.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_i386.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u2_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u2_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u2_i386.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/epcr-2.3.12-1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../epcr_2.3.12-1-7_source.changes dpkg-buildpackage: info: source package epcr dpkg-buildpackage: info: source version 2.3.12-1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/epcr-2.3.12-1' rm -fr epcr rm -f *_depend.mk rm -f libepcr.a *.o rm -f e-PCR famap fahash re-PCR make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/epcr-2.3.12-1' dh_auto_build -- links depend all OPTIMIZE=6 make -j8 "INSTALL=install --strip-program=true" links depend all OPTIMIZE=6 make[2]: Entering directory '/build/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' links ; \ done for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' depend ; \ done for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' all ; \ done make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./faread.cpp ./fast_seqio_read.cpp ./fast_seqio_write.cpp ./hashset.cpp ./mmap.cpp ./align.cpp ./stsmatch_i.cpp ./stsmatch_m.cpp ./stsfilter.cpp ./stsmatch.cpp ./fahash_create.cpp ./fahash_create1.cpp ./fahash_create2.cpp ./fahash_lookup.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./libepcr_depend.mk make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c faread.cpp -o faread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_read.cpp -o fast_seqio_read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_write.cpp -o fast_seqio_write.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c hashset.cpp -o hashset.o make[3]: Leaving directory '/build/epcr-2.3.12-1' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c mmap.cpp -o mmap.o make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c align.cpp -o align.o make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_i.cpp -o stsmatch_i.o fast_seqio_write.cpp:45:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] FILE * f = fopen64( fname.c_str(), "w"FILE_BINARY ); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_m.cpp -o stsmatch_m.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsfilter.cpp -o stsfilter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch.cpp -o stsmatch.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create.cpp -o fahash_create.o make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./e-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdepcr_depend.mk g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create1.cpp -o fahash_create1.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create2.cpp -o fahash_create2.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_lookup.cpp -o fahash_lookup.o make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./famap_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfamap_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./fahash_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfahash_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./re-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdrpcr_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()': fahash_create2.cpp:145:2: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr fmap( 0 ); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from fahash_create2.cpp:38: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ fahash_lookup.cpp: In member function 'void ncbi::pcr_tools::CFaLookup::AttachFile(const string&)': fahash_lookup.cpp:161:6: warning: ignoring return value of 'ssize_t read(int, void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] read( m_Fd, buff, 16 ); // signature ~~~~^~~~~~~~~~~~~~~~~~ rm -f libepcr.a ar cru libepcr.a ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libepcr.a make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c e-PCR_main.cpp -o e-PCR_main.o e-PCR_main.cpp: In member function 'int CMain::Execute()': e-PCR_main.cpp:626:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr cbk(0); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from e-PCR_main.cpp:40: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ rm -f e-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o e-PCR ./e-PCR_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c famap_main.cpp -o famap_main.o famap_main.cpp: In member function 'int CMain::Execute()': famap_main.cpp:145:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ rm -f famap g++ -Wl,-z,relro -Wl,-z,now -L. -o famap ./famap_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_main.cpp -o fahash_main.o fahash_main.cpp: In member function 'int CMain::Build()': fahash_main.cpp:212:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr indexer( ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from fahash_main.cpp:41: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:261:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ rm -f fahash g++ -Wl,-z,relro -Wl,-z,now -L. -o fahash ./fahash_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c re-PCR_main.cpp -o re-PCR_main.o re-PCR_main.cpp: In member function 'int CMain::PrimerLookup()': re-PCR_main.cpp:365:17: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr rev(FlipSequence(argv[i])); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from re-PCR_main.cpp:42: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ re-PCR_main.cpp:395:25: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr rev(FlipSequence(primer.c_str())); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from re-PCR_main.cpp:42: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:349:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ rm -f re-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o re-PCR ./re-PCR_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[2]: Leaving directory '/build/epcr-2.3.12-1' make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/epcr-2.3.12-1' # do nothing make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ncbi-epcr' in '../ncbi-epcr_2.3.12-1-7_i386.deb'. dpkg-deb: building package 'ncbi-epcr-dbgsym' in '../ncbi-epcr-dbgsym_2.3.12-1-7_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../epcr_2.3.12-1-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4834 and its subdirectories I: Current time: Tue Aug 31 22:16:12 -12 2021 I: pbuilder-time-stamp: 1630491372 Wed Sep 1 10:16:13 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Wed Sep 1 10:16:13 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Wed Sep 1 10:17:11 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Wed Sep 1 10:17:11 UTC 2021 I: epcr_2.3.12-1-7_i386.changes: Format: 1.8 Date: Wed, 13 Feb 2019 08:19:01 +0100 Source: epcr Binary: ncbi-epcr ncbi-epcr-dbgsym Architecture: i386 Version: 2.3.12-1-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s Closes: 922192 Changes: epcr (2.3.12-1-7) unstable; urgency=medium . [ Do Thanh Trung ] * Enable cross building Closes: #922192 . [ Andreas Tille ] * Secure URI for homepage * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright * Drop non-functional autopkgtest template Checksums-Sha1: 38ceecab158a19916ec8819fafe0a0eb44c57b89 4674 epcr_2.3.12-1-7_i386.buildinfo fffdee56d70e5f25ecf8f559c8c8b9e302da8153 2040324 ncbi-epcr-dbgsym_2.3.12-1-7_i386.deb bcde6c8b192acd255f5d183971fc4a0733fa84bc 130052 ncbi-epcr_2.3.12-1-7_i386.deb Checksums-Sha256: 696d7d67ed1760941862fb16952eccd532884599bbac88a156276db9a115569a 4674 epcr_2.3.12-1-7_i386.buildinfo da05b33964315b4cb5498f50ed1faca306e5ed3ce4cec7ecdc214f74c8e9ef7c 2040324 ncbi-epcr-dbgsym_2.3.12-1-7_i386.deb af1ea02db1c98a6c95c39d6faf22f2cdae4c812f04027078a4df3c6afd1d5e73 130052 ncbi-epcr_2.3.12-1-7_i386.deb Files: 1d739af3b4fbbd844c3f12598dcad3dc 4674 science optional epcr_2.3.12-1-7_i386.buildinfo 4f3d79cc1fa898b5396d920e6fe7514e 2040324 debug optional ncbi-epcr-dbgsym_2.3.12-1-7_i386.deb b3d9ecd6ccd84c27f4ef9c0a689005b3 130052 science optional ncbi-epcr_2.3.12-1-7_i386.deb Wed Sep 1 10:17:35 UTC 2021 I: diffoscope 180 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.mjwimZ3YoH/epcr_2.3.12-1-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.mjwimZ3YoH/epcr_2.3.12-1-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.mjwimZ3YoH/epcr_2.3.12-1-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.mjwimZ3YoH/b1/epcr_2.3.12-1-7_i386.changes /srv/reproducible-results/rbuild-debian/tmp.mjwimZ3YoH/b2/epcr_2.3.12-1-7_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 3.027s) 3.027s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.203s) 0.203s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Sep 1 10:18:25 UTC 2021 I: diffoscope 180 found no differences in the changes files, and a .buildinfo file also exists. Wed Sep 1 10:18:25 UTC 2021 I: epcr from buster built successfully and reproducibly on i386. Wed Sep 1 10:18:27 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Sep 1 10:18:27 UTC 2021 I: Submitting 8.0K b1/epcr_2.3.12-1-7_i386.buildinfo.asc Wed Sep 1 10:18:28 UTC 2021 I: Submitting 8.0K b2/epcr_2.3.12-1-7_i386.buildinfo.asc Wed Sep 1 10:18:30 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Sep 1 10:18:30 UTC 2021 I: Done submitting .buildinfo files. Wed Sep 1 10:18:30 UTC 2021 I: Removing signed epcr_2.3.12-1-7_i386.buildinfo.asc files: removed './b1/epcr_2.3.12-1-7_i386.buildinfo.asc' removed './b2/epcr_2.3.12-1-7_i386.buildinfo.asc'