Fri Jun 21 20:42:12 UTC 2019 I: starting to build dssp/buster/i386 on jenkins on '2019-06-21 20:41' Fri Jun 21 20:42:12 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/163/console.log Fri Jun 21 20:42:12 UTC 2019 I: Downloading source for buster/dssp=3.0.0-3 --2019-06-21 20:42:13-- http://deb.debian.org/debian/pool/main/d/dssp/dssp_3.0.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/d/dssp/dssp_3.0.0-3.dsc [following] --2019-06-21 20:42:13-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dssp/dssp_3.0.0-3.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 2109 (2.1K) Saving to: ‘dssp_3.0.0-3.dsc’ 0K .. 100% 153M=0s 2019-06-21 20:42:13 (153 MB/s) - ‘dssp_3.0.0-3.dsc’ saved [2109/2109] Fri Jun 21 20:42:13 UTC 2019 I: dssp_3.0.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dssp Binary: dssp Architecture: any Version: 3.0.0-3 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman , Laszlo Kajan , Andreas Tille Homepage: http://www.cmbi.ru.nl/dssp.html Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/dssp Vcs-Git: https://salsa.debian.org/med-team/dssp.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libboost-thread-dev Package-List: dssp deb science optional arch=any Checksums-Sha1: 4b35bc8e7d9f62262b00b918d5b194fbdd65ffaa 47974 dssp_3.0.0.orig.tar.gz efaf3bc6d47258d9eea0a389aa1f07d0b115fe2e 62124 dssp_3.0.0-3.debian.tar.xz Checksums-Sha256: 25d39a2107767b622a59dd9fa790112c1516564b8518fc6ac0fab081d5ac3ab0 47974 dssp_3.0.0.orig.tar.gz 52782766c11d82e410637538d0b801d6a0def5cc38e3af3c10e149b15c9f40aa 62124 dssp_3.0.0-3.debian.tar.xz Files: e34b0d67622a702661fad441f22a65b0 47974 dssp_3.0.0.orig.tar.gz a2df58196f5112ac3174d4faa02ad701 62124 dssp_3.0.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvVjdYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG8ng//TneHxrpIaIVrQ/bhDoIogpdI7tYBqHrs RH5xwUBx/y41VeTf9QkUdYtiG6EFwC93vcSCTy72MmMebsW4JuRR3FRfiXFnK7fc DOMMwquM6l6Hv53JOohFO784qypV+cQBM6vRCPEMeC14LIJQB2LONJuR+n10tvd4 xR9TiciZdIZr4ZiHq+6G2qanG0hyq3A1DSD0Lj+6mvfIZnRozLNwzea5hTrM9Km2 BF0Km+JLCySeEuzmYVNYns2xTiooZsvRK9bE2kM6DKFg7oDlY3aiyZzSI665bWfJ VnuFFy2RA5oGHVTShgA3jZGYYOB/w0hcUWhDI82r/lSqP3E6Oy0McALNX0LYpeT+ xpeRlXT2Q0fBJGvw+8HcJiN2S62QfIWO8jSbrRqiu42W3IxyHxRclNzP1Pz0P62Z k/2ILx8E34uBbz4Ox781rrfcYKKV2PGxSIarlPSfyudABCxuUyU3m2cBevucJjb5 8Tt+L2liRYJ+msbUq+huDZ0IAPhin5+jS1y/qat2hFAVxkrz/CnDv1jZxnWZuj2Q 1ROljx5sjEBZ4keNbz3AJttHjzTPHLakaTts193N0q9bWyjo/Gic8YOkWvitWMbz g3mgXwbooqoKlsesqbsRlrumtj3tzi9rXHBaK19/HmMFvq+MVJuetg/S/iFmzv9o 3vbLcXSI0ME= =d4sn -----END PGP SIGNATURE----- Fri Jun 21 20:42:13 UTC 2019 I: Checking whether the package is not for us Fri Jun 21 20:42:13 UTC 2019 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Fri Jun 21 20:42:13 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Fri Jun 21 20:57:56 UTC 2019 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 21 08:42:14 -12 2019 I: pbuilder-time-stamp: 1561149734 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dssp_3.0.0-3.dsc] I: copying [./dssp_3.0.0.orig.tar.gz] I: copying [./dssp_3.0.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 27 22:22:14 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dssp_3.0.0-3.dsc dpkg-source: info: extracting dssp in dssp-3.0.0 dpkg-source: info: unpacking dssp_3.0.0.orig.tar.gz dpkg-source: info: unpacking dssp_3.0.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying hardening.patch dpkg-source: info: applying boost1.65.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libboost-thread-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-atomic1.67-dev{a} libboost-atomic1.67.0{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-date-time1.67-dev{a} libboost-date-time1.67.0{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-iostreams-dev{a} libboost-iostreams1.67-dev{a} libboost-program-options-dev{a} libboost-program-options1.67-dev{a} libboost-program-options1.67.0{a} libboost-regex1.67-dev{a} libboost-regex1.67.0{a} libboost-serialization1.67-dev{a} libboost-serialization1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost-thread-dev{a} libboost-thread1.67-dev{a} libboost-thread1.67.0{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu-dev{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 42.8 MB of archives. After unpacking 289 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 icu-devtools i386 63.1-6 [196 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost1.67-dev i386 1.67.0-13 [8386 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-atomic1.67.0 i386 1.67.0-13 [226 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-atomic1.67-dev i386 1.67.0-13 [225 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-chrono1.67.0 i386 1.67.0-13 [235 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-chrono1.67-dev i386 1.67.0-13 [237 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-date-time1.67.0 i386 1.67.0-13 [239 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-serialization1.67.0 i386 1.67.0-13 [325 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-serialization1.67-dev i386 1.67.0-13 [367 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-date-time1.67-dev i386 1.67.0-13 [248 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-filesystem1.67.0 i386 1.67.0-13 [265 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-system1.67-dev i386 1.67.0-13 [232 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-filesystem1.67-dev i386 1.67.0-13 [274 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-filesystem-dev i386 1.67.0.1 [3684 B] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-regex1.67.0 i386 1.67.0-13 [507 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu-dev i386 63.1-6 [9374 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-regex1.67-dev i386 1.67.0-13 [560 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-iostreams1.67-dev i386 1.67.0-13 [257 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-iostreams-dev i386 1.67.0.1 [3632 B] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-program-options1.67.0 i386 1.67.0-13 [363 kB] Get: 54 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-program-options1.67-dev i386 1.67.0-13 [393 kB] Get: 55 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-program-options-dev i386 1.67.0.1 [3660 B] Get: 56 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-system-dev i386 1.67.0.1 [3788 B] Get: 57 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-thread1.67.0 i386 1.67.0-13 [269 kB] Get: 58 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-thread1.67-dev i386 1.67.0-13 [272 kB] Get: 59 http://cdn-fastly.deb.debian.org/debian buster/main i386 libboost-thread-dev i386 1.67.0.1 [3672 B] Fetched 42.8 MB in 54s (786 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4_i386.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6_i386.deb ... Unpacking libicu63:i386 (63.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. 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Unpacking libboost-thread-dev:i386 (1.67.0.1) ... Setting up libboost1.67-dev:i386 (1.67.0-13) ... Setting up libboost-program-options1.67.0:i386 (1.67.0-13) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libboost-chrono1.67.0:i386 (1.67.0-13) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libboost-program-options1.67-dev:i386 (1.67.0-13) ... Setting up libglib2.0-0:i386 (2.58.3-2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libboost-date-time1.67.0:i386 (1.67.0-13) ... Setting up file (1:5.35-4) ... Setting up libicu63:i386 (63.1-6) ... Setting up libboost-chrono1.67-dev:i386 (1.67.0-13) ... Setting up autotools-dev (20180224.1) ... Setting up libboost-program-options-dev:i386 (1.67.0.1) ... Setting up libncurses6:i386 (6.1+20181013-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... 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Setting up m4 (1.4.18-2) ... Setting up libboost-date-time1.67-dev:i386 (1.67.0-13) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libboost-iostreams1.67-dev:i386 (1.67.0-13) ... Setting up libboost-filesystem-dev:i386 (1.67.0.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libboost-thread1.67-dev:i386 (1.67.0-13) ... Setting up libboost-iostreams-dev:i386 (1.67.0.1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... 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I: Building the package I: Running cd /build/dssp-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dssp dpkg-buildpackage: info: source version 3.0.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/dssp-3.0.0' rm -rf obj/* mkdssp make[1]: Leaving directory '/build/dssp-3.0.0' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dssp-3.0.0' mkdir -p obj g++ -MD -c -o obj/mkdssp.o src/mkdssp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dssp-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/dssp.o src/dssp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dssp-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/primitives-3d.o src/primitives-3d.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dssp-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/structure.o src/structure.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dssp-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/utils.o src/utils.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dssp-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/mas.o src/mas.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dssp-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/iocif.o src/iocif.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dssp-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG In file included from src/structure.cpp:9: src/structure.h: In constructor 'MResidue::MResidue(int32, char, MResidue*)': src/structure.h:283:17: warning: 'MResidue::mRadius' will be initialized after [-Wreorder] double mRadius; ^~~~~~~ src/structure.h:274:33: warning: 'MAtom MResidue::mH' [-Wreorder] MAtom mC, mN, mCA, mO, mH; ^~ src/structure.cpp:440:1: warning: when initialized here [-Wreorder] MResidue::MResidue(int32 inNumber, char inTypeCode, MResidue* inPrevious) ^~~~~~~~ In file included from src/structure.cpp:9: src/structure.h: In constructor 'MProtein::MProtein(const string&, MChain*)': src/structure.h:430:40: warning: 'MProtein::mNrOfHBondsInAntiparallelBridges' will be initialized after [-Wreorder] uint32 mNrOfHBondsInParallelBridges, mNrOfHBondsInAntiparallelBridges; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/structure.h:424:17: warning: 'uint32 MProtein::mResidueCount' [-Wreorder] uint32 mResidueCount, mChainBreaks; ^~~~~~~~~~~~~ src/structure.cpp:1031:1: warning: when initialized here [-Wreorder] MProtein::MProtein(const std::string& inID, MChain* inChain) ^~~~~~~~ g++ -o mkdssp obj/mkdssp.o obj/dssp.o obj/primitives-3d.o obj/structure.o obj/utils.o obj/mas.o obj/iocif.o -Wl,-z,relro -lboost_thread -lboost_program_options -lboost_iostreams -lboost_system -g -pthread -Wl,-z,relro make[1]: Leaving directory '/build/dssp-3.0.0' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j10 install DESTDIR=/build/dssp-3.0.0/debian/dssp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dssp-3.0.0' install -d /build/dssp-3.0.0/debian/dssp/usr/bin /build/dssp-3.0.0/debian/dssp/usr/share/man/man1 install -m 755 mkdssp /build/dssp-3.0.0/debian/dssp/usr/bin/mkdssp install doc/mkdssp.1 /build/dssp-3.0.0/debian/dssp/usr/share/man/man1/mkdssp.1 make[1]: Leaving directory '/build/dssp-3.0.0' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/dssp/usr/bin/mkdssp was not linked against libboost_iostreams.so.1.67.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dssp' in '../dssp_3.0.0-3_i386.deb'. dpkg-deb: building package 'dssp-dbgsym' in '../dssp-dbgsym_3.0.0-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dssp_3.0.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2931 and its subdirectories I: Current time: Fri Jun 21 08:57:56 -12 2019 I: pbuilder-time-stamp: 1561150676 Fri Jun 21 20:57:56 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build16-i386.debian.net. Fri Jun 21 20:57:56 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build16-i386.debian.net. Fri Jun 21 20:58:43 UTC 2019 I: Deleting $TMPDIR on profitbricks-build16-i386.debian.net. Fri Jun 21 20:58:44 UTC 2019 I: dssp_3.0.0-3_i386.changes: Format: 1.8 Date: Sun, 28 Oct 2018 11:18:40 +0100 Source: dssp Binary: dssp dssp-dbgsym Architecture: i386 Version: 3.0.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dssp - protein secondary structure assignment based on 3D structure Changes: dssp (3.0.0-3) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Remove trailing whitespace in debian/copyright Checksums-Sha1: dd3b39b50e6c24382418beaf41fc204ebd0965cb 2754332 dssp-dbgsym_3.0.0-3_i386.deb 089841d1da8222e06e54f900e541ef9ce052ae3c 5523 dssp_3.0.0-3_i386.buildinfo ba572ed64e777c27d2973c842230302dca984372 263664 dssp_3.0.0-3_i386.deb Checksums-Sha256: 048c73374d3c2742f9e450b836691a6cfe5bb457a1a1964e419c2ed530d3eda2 2754332 dssp-dbgsym_3.0.0-3_i386.deb 320d466a1165ed7b476fae6ce5b9b48387ae9637e1a8a0ca57b34b835e558317 5523 dssp_3.0.0-3_i386.buildinfo 3d8b36171b1cfeccced2710e9813a45fe41a4b9bb72c648abf1804b2f8586433 263664 dssp_3.0.0-3_i386.deb Files: fad501a07e3b78ee69265d46d9e6cb1f 2754332 debug optional dssp-dbgsym_3.0.0-3_i386.deb 08711cba68ece2dfc5fe9afd387133c0 5523 science optional dssp_3.0.0-3_i386.buildinfo 5e7193ef63ed1173664fc778573a1089 263664 science optional dssp_3.0.0-3_i386.deb Fri Jun 21 20:58:45 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.POd4DZ8RN3/dssp_3.0.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.POd4DZ8RN3/dssp_3.0.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.POd4DZ8RN3/dssp_3.0.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.POd4DZ8RN3/b1/dssp_3.0.0-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.POd4DZ8RN3/b2/dssp_3.0.0-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.291s) 0.291s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.058s) 0.058s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Jun 21 20:58:46 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 21 20:58:46 UTC 2019 I: dssp from buster built successfully and reproducibly on i386. Fri Jun 21 20:58:48 UTC 2019 I: Submitting .buildinfo files to external archives: Fri Jun 21 20:58:48 UTC 2019 I: Submitting 8.0K b1/dssp_3.0.0-3_i386.buildinfo.asc Fri Jun 21 20:59:18 UTC 2019 E: Could not submit buildinfo from b1 to http://buildinfo.debian.net/api/submit Fri Jun 21 20:59:18 UTC 2019 I: Submitting 8.0K b2/dssp_3.0.0-3_i386.buildinfo.asc Fri Jun 21 20:59:27 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 21 20:59:27 UTC 2019 I: Done submitting .buildinfo files. Fri Jun 21 20:59:27 UTC 2019 I: Removing signed dssp_3.0.0-3_i386.buildinfo.asc files: removed './b1/dssp_3.0.0-3_i386.buildinfo.asc' removed './b2/dssp_3.0.0-3_i386.buildinfo.asc'