Fri Jun 21 19:14:43 UTC 2019 I: starting to build andi/buster/i386 on jenkins on '2019-06-21 19:14' Fri Jun 21 19:14:43 UTC 2019 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/170/console.log Fri Jun 21 19:14:43 UTC 2019 I: Downloading source for buster/andi=0.12-4 --2019-06-21 19:14:43-- http://deb.debian.org/debian/pool/main/a/andi/andi_0.12-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 302 Found Location: http://cdn-fastly.deb.debian.org/debian/pool/main/a/andi/andi_0.12-4.dsc [following] --2019-06-21 19:14:43-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/andi/andi_0.12-4.dsc Reusing existing connection to 78.137.99.97:3128. Proxy request sent, awaiting response... 200 OK Length: 1946 (1.9K) Saving to: ‘andi_0.12-4.dsc’ 0K . 100% 141M=0s 2019-06-21 19:14:43 (141 MB/s) - ‘andi_0.12-4.dsc’ saved [1946/1946] Fri Jun 21 19:14:43 UTC 2019 I: andi_0.12-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: andi Binary: andi Architecture: any Version: 0.12-4 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl Homepage: https://github.com/EvolBioInf/andi Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/andi Vcs-Git: https://salsa.debian.org/med-team/andi.git Build-Depends: debhelper (>= 11~), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev Package-List: andi deb science optional arch=any Checksums-Sha1: 8b29860e9cd2fb0fa81006c53b3a9e583bddf9e7 543894 andi_0.12.orig.tar.gz a62bfbd49bf6700999a940021cb96e3d66e1aa4a 10832 andi_0.12-4.debian.tar.xz Checksums-Sha256: 3fdc1deac881e0db44a709702d1b43eea898e4c1f20ff38007adc60728c98557 543894 andi_0.12.orig.tar.gz f2f4cd28b99f8636eee2317a1f39fc493c36efebab691222974a5af36420a0b8 10832 andi_0.12-4.debian.tar.xz Files: a2135a1a16589ff3a709d4ad18a5a03f 543894 andi_0.12.orig.tar.gz cf23355e2c72743263da4eb253b9cd10 10832 andi_0.12-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvUfekRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEbCw/+O+IPfmE160fcUJq0RPnlcCzoJOABi4wk e5ZguYE0JW9o8PoiHs1hEBOh/EVnphCIBFAZuKv/J8PsvlZXyYCsVw4DQWKVh5uQ 4uvfUgKWC+mv4L/Qnsna1LrPoPRi+S1+Sk/Evg8cLr9ZpeHue0nBN1TRYJExfJAR cRRsGKov0crM8+quhXyR9awp3oJ1+LYuJdxzS3vEbmIW0Z5gapexkR858eeMA9m6 fbqB2UgGafgkcuzs00IE1RYywI6V/IrfXmFc9ti2wz1+nX7yMBH4XKP21JAGFUoh rb7jFnvpwwjAeKUeFKUq7fnCkgLh+wi5rDRh8WDMm9hNYFNgluHYrkvPee08Yl12 egfr3z7g5qiZy2fU7BY6i453orf2xHv0CeO69zamT++IJw1VlSpjOJu8xCoyu0td QjIAy7V3ijKqzvt2r+0GKm8y/LB9v1iLJC4CtqtCYbpcQUsOkmqEalvGwjGoCpK0 rwLPN8aJS64rDn9/7+NO4c3UkBTt2+y+e1r0jm41Q7AJ3OrYdyO/OwyN0gf+DurQ FZVB/kZkqkpK+jBOAM4xJztE4vjWMbouGkx3Ai/Xfkv0ozVchNY2Wu4Dl9WTz4HD sYNg8uu67rmVqPx8hQzIB7Zk43iLyHd6S2DVRvjGL8v784HPNRBdIYp9/XQNkyc+ PKoNCn5/tSE= =ss6p -----END PGP SIGNATURE----- Fri Jun 21 19:14:43 UTC 2019 I: Checking whether the package is not for us Fri Jun 21 19:14:44 UTC 2019 I: Starting 1st build on remote node profitbricks-build2-i386.debian.net. Fri Jun 21 19:14:44 UTC 2019 I: Preparing to do remote build '1' on profitbricks-build2-i386.debian.net. Fri Jun 21 19:28:49 UTC 2019 I: Deleting $TMPDIR on profitbricks-build2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 21 07:14:46 -12 2019 I: pbuilder-time-stamp: 1561144486 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [andi_0.12-4.dsc] I: copying [./andi_0.12.orig.tar.gz] I: copying [./andi_0.12-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 27 03:02:01 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./andi_0.12-4.dsc dpkg-source: info: extracting andi in andi-0.12 dpkg-source: info: unpacking andi_0.12.orig.tar.gz dpkg-source: info: unpacking andi_0.12-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Make-unit-tests-reproducible.patch dpkg-source: info: applying 0002-prefix-files-in-unit-tests.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libbsd0{a} libcroco3{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libmpdec2{a} libncurses6{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libselinux1-dev{a} libsepol1-dev{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} pkgconf{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 34.1 MB of archives. After unpacking 136 MB will be used. Writing extended state information... Get: 1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://cdn-fastly.deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://cdn-fastly.deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://cdn-fastly.deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://cdn-fastly.deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1c-1 [1532 kB] Get: 8 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2 [590 kB] Get: 9 http://cdn-fastly.deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-1 [102 kB] Get: 10 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2 [1746 kB] Get: 11 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 12 http://cdn-fastly.deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 14 http://cdn-fastly.deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://cdn-fastly.deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2 [1751 kB] Get: 17 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2 [330 kB] Get: 18 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 19 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 20 http://cdn-fastly.deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 21 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4 [242 kB] Get: 22 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4 [124 kB] Get: 23 http://cdn-fastly.deb.debian.org/debian buster/main i386 file i386 1:5.35-4 [66.3 kB] Get: 24 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 25 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 26 http://cdn-fastly.deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 27 http://cdn-fastly.deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 28 http://cdn-fastly.deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 29 http://cdn-fastly.deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 30 http://cdn-fastly.deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 31 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 32 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 36 http://cdn-fastly.deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 37 http://cdn-fastly.deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 38 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2 [1333 kB] Get: 39 http://cdn-fastly.deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 40 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 41 http://cdn-fastly.deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 42 http://cdn-fastly.deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2 [109 kB] Get: 43 http://cdn-fastly.deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 44 http://cdn-fastly.deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 45 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 46 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 47 http://cdn-fastly.deb.debian.org/debian buster/main i386 uuid-dev i386 2.33.1-0.1 [94.0 kB] Get: 48 http://cdn-fastly.deb.debian.org/debian buster/main i386 libblkid-dev i386 2.33.1-0.1 [247 kB] Get: 49 http://cdn-fastly.deb.debian.org/debian buster/main i386 libdivsufsort3 i386 2.0.1-4 [49.5 kB] Get: 50 http://cdn-fastly.deb.debian.org/debian buster/main i386 libdivsufsort-dev i386 2.0.1-4 [27.4 kB] Get: 51 http://cdn-fastly.deb.debian.org/debian buster/main i386 libffi-dev i386 3.2.1-9 [156 kB] Get: 52 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-data all 2.58.3-2 [1109 kB] Get: 53 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-bin i386 2.58.3-2 [129 kB] Get: 54 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 55 http://cdn-fastly.deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 56 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-dev-bin i386 2.58.3-2 [157 kB] Get: 57 http://cdn-fastly.deb.debian.org/debian buster/main i386 libmount-dev i386 2.33.1-0.1 [252 kB] Get: 58 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcre16-3 i386 2:8.39-12 [258 kB] Get: 59 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcre32-3 i386 2:8.39-12 [250 kB] Get: 60 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcrecpp0v5 i386 2:8.39-12 [153 kB] Get: 61 http://cdn-fastly.deb.debian.org/debian buster/main i386 libpcre3-dev i386 2:8.39-12 [656 kB] Get: 62 http://cdn-fastly.deb.debian.org/debian buster/main i386 libsepol1-dev i386 2.8-1 [370 kB] Get: 63 http://cdn-fastly.deb.debian.org/debian buster/main i386 libselinux1-dev i386 2.8-1+b1 [177 kB] Get: 64 http://cdn-fastly.deb.debian.org/debian buster/main i386 pkgconf i386 1.6.0-1 [69.7 kB] Get: 65 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 66 http://cdn-fastly.deb.debian.org/debian buster/main i386 libglib2.0-dev i386 2.58.3-2 [1596 kB] Get: 67 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgslcblas0 i386 2.5+dfsg-6 [99.2 kB] Get: 68 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgsl23 i386 2.5+dfsg-6 [855 kB] Get: 69 http://cdn-fastly.deb.debian.org/debian buster/main i386 libgsl-dev i386 2.5+dfsg-6 [1076 kB] Fetched 34.1 MB in 32s (1061 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../2-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../4-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libssl1.1:i386. Preparing to unpack .../6-libssl1.1_1.1.1c-1_i386.deb ... Unpacking libssl1.1:i386 (1.1.1c-1) ... Selecting previously unselected package libpython3.7-minimal:i386. Preparing to unpack .../7-libpython3.7-minimal_3.7.3-2_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.3-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../8-libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../9-python3.7-minimal_3.7.3-2_i386.deb ... Unpacking python3.7-minimal (3.7.3-2) ... Setting up libssl1.1:i386 (1.1.1c-1) ... Setting up libpython3.7-minimal:i386 (3.7.3-2) ... Setting up libexpat1:i386 (2.2.6-1) ... Setting up python3.7-minimal (3.7.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20126 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_i386.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../2-libmpdec2_2.4.2-2_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-2) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20587 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.3-1_i386.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_i386.deb ... Unpacking libmagic-mgc (1:5.35-4) ... 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Adding 'diversion of /usr/bin/pkg-config to /usr/bin/pkg-config.real by pkgconf' Adding 'diversion of /usr/share/aclocal/pkg.m4 to /usr/share/aclocal/pkg.real.m4 by pkgconf' Adding 'diversion of /usr/share/man/man1/pkg-config.1.gz to /usr/share/man/man1/pkg-config.real.1.gz by pkgconf' Adding 'diversion of /usr/share/pkg-config-crosswrapper to /usr/share/pkg-config-crosswrapper.real by pkgconf' Unpacking pkgconf (1.6.0-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../46-zlib1g-dev_1%3a1.2.11.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Selecting previously unselected package libglib2.0-dev:i386. Preparing to unpack .../47-libglib2.0-dev_2.58.3-2_i386.deb ... Unpacking libglib2.0-dev:i386 (2.58.3-2) ... Selecting previously unselected package libgslcblas0:i386. Preparing to unpack .../48-libgslcblas0_2.5+dfsg-6_i386.deb ... Unpacking libgslcblas0:i386 (2.5+dfsg-6) ... Selecting previously unselected package libgsl23:i386. 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Setting up libglib2.0-bin (2.58.3-2) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libmount-dev:i386 (2.33.1-0.1) ... Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libselinux1-dev:i386 (2.8-1+b1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up libglib2.0-dev-bin (2.58.3-2) ... Setting up po-debconf (1.0.21) ... Setting up libglib2.0-dev:i386 (2.58.3-2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/andi-0.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.12-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build dh build --with autoreconf dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:22: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:22: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:22: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:22: but option 'subdir-objects' is disabled test/Makefile.am:15: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:15: but option 'subdir-objects' is disabled test/Makefile.am:15: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:15: but option 'subdir-objects' is disabled test/Makefile.am:15: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:15: but option 'subdir-objects' is disabled test/Makefile.am:15: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:15: but option 'subdir-objects' is disabled test/Makefile.am:15: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:15: but option 'subdir-objects' is disabled test/Makefile.am:10: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:10: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/andi-0.12' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking divsufsort.h usability... yes checking divsufsort.h presence... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking whether g++ supports C++11 features by default... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating opt/psufsort/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/build/andi-0.12' dh_auto_build make -j10 make[1]: Entering directory '/build/andi-0.12' Making all in . make[2]: Entering directory '/build/andi-0.12' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/andi-0.12' Making all in libs make[2]: Entering directory '/build/andi-0.12/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpfasta.a make[2]: Leaving directory '/build/andi-0.12/libs' Making all in opt make[2]: Entering directory '/build/andi-0.12/opt' rm -f libcompat.a ar cru libcompat.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a make[2]: Leaving directory '/build/andi-0.12/opt' Making all in src make[2]: Entering directory '/build/andi-0.12/src' make all-am make[3]: Entering directory '/build/andi-0.12/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:208:30: warning: unused parameter 'last_match' [-Wunused-parameter] const struct anchor *last_match, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ g++ -fopenmp -Wall -Wextra -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/andi-0.12/src' make[2]: Leaving directory '/build/andi-0.12/src' Making all in docs make[2]: Entering directory '/build/andi-0.12/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/andi-0.12/docs' Making all in test make[2]: Entering directory '/build/andi-0.12/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c ../src/sequence.c: In function 'normalize': ../src/sequence.c:277: warning: ignoring #pragma omp atomic [-Wunknown-pragmas] #pragma omp atomic test_esa.c: In function 'setup': test_esa.c:45:44: warning: unused parameter 'test_data' [-Wunused-parameter] void setup( esa_fixture *ef, gconstpointer test_data){ ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:70:45: warning: unused parameter 'test_data' [-Wunused-parameter] void setup2( esa_fixture *ef, gconstpointer test_data){ ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:96:47: warning: unused parameter 'test_data' [-Wunused-parameter] void teardown( esa_fixture *ef, gconstpointer test_data){ ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:105:44: warning: unused parameter 'test_data' [-Wunused-parameter] void basic( esa_fixture *ef, gconstpointer test_data){ ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:132:51: warning: unused parameter 'test_data' [-Wunused-parameter] void normq_cached( esa_fixture *ef, gconstpointer test_data){ ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:171:45: warning: unused parameter 'test_data' [-Wunused-parameter] void prefix( esa_fixture *ef, gconstpointer test_data){ ~~~~~~~~~~~~~~^~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:208:30: warning: unused parameter 'last_match' [-Wunused-parameter] const struct anchor *last_match, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm g++ -fopenmp -Wall -Wextra -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm g++ -fopenmp -Wall -Wextra -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/andi-0.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/andi-0.12/test' make[1]: Leaving directory '/build/andi-0.12' dh_auto_test make -j10 check VERBOSE=1 make[1]: Entering directory '/build/andi-0.12' Making check in . make[2]: Entering directory '/build/andi-0.12' make check-TESTS make[3]: Entering directory '/build/andi-0.12' make[4]: Entering directory '/build/andi-0.12' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/low_homo.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.12 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/andi-0.12' make[3]: Leaving directory '/build/andi-0.12' make[2]: Leaving directory '/build/andi-0.12' Making check in libs make[2]: Entering directory '/build/andi-0.12/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.12/libs' Making check in opt make[2]: Entering directory '/build/andi-0.12/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.12/opt' Making check in src make[2]: Entering directory '/build/andi-0.12/src' make[2]: Leaving directory '/build/andi-0.12/src' Making check in docs make[2]: Entering directory '/build/andi-0.12/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.12/docs' Making check in test make[2]: Entering directory '/build/andi-0.12/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/andi-0.12/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/andi-0.12/test' make[2]: Leaving directory '/build/andi-0.12/test' make[1]: Leaving directory '/build/andi-0.12' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep dh_auto_install make -j10 install DESTDIR=/build/andi-0.12/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/andi-0.12' Making install in . make[2]: Entering directory '/build/andi-0.12' make[3]: Entering directory '/build/andi-0.12' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/andi-0.12/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/andi-0.12/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/andi-0.12' make[2]: Leaving directory '/build/andi-0.12' Making install in libs make[2]: Entering directory '/build/andi-0.12/libs' make[3]: Entering directory '/build/andi-0.12/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.12/libs' make[2]: Leaving directory '/build/andi-0.12/libs' Making install in opt make[2]: Entering directory '/build/andi-0.12/opt' make[3]: Entering directory '/build/andi-0.12/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.12/opt' make[2]: Leaving directory '/build/andi-0.12/opt' Making install in src make[2]: Entering directory '/build/andi-0.12/src' make[3]: Entering directory '/build/andi-0.12/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/andi-0.12/debian/andi/usr/bin' /usr/bin/install -c andi '/build/andi-0.12/debian/andi/usr/bin' make[3]: Leaving directory '/build/andi-0.12/src' make[2]: Leaving directory '/build/andi-0.12/src' Making install in docs make[2]: Entering directory '/build/andi-0.12/docs' make[3]: Entering directory '/build/andi-0.12/docs' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/andi-0.12/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/andi-0.12/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/andi-0.12/docs' make[2]: Leaving directory '/build/andi-0.12/docs' Making install in test make[2]: Entering directory '/build/andi-0.12/test' make[3]: Entering directory '/build/andi-0.12/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.12/test' make[2]: Leaving directory '/build/andi-0.12/test' make[1]: Leaving directory '/build/andi-0.12' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/andi/usr/bin/andi was not linked against libstdc++.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/andi/usr/bin/andi was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/andi/usr/bin/andi was not linked against libgcc_s.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.12-4_i386.deb'. dpkg-deb: building package 'andi' in '../andi_0.12-4_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../andi_0.12-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3940 and its subdirectories I: Current time: Fri Jun 21 07:28:49 -12 2019 I: pbuilder-time-stamp: 1561145329 Fri Jun 21 19:28:49 UTC 2019 I: 1st build successful. Starting 2nd build on remote node profitbricks-build6-i386.debian.net. Fri Jun 21 19:28:49 UTC 2019 I: Preparing to do remote build '2' on profitbricks-build6-i386.debian.net. Fri Jun 21 19:29:48 UTC 2019 I: Deleting $TMPDIR on profitbricks-build6-i386.debian.net. Fri Jun 21 19:29:48 UTC 2019 I: andi_0.12-4_i386.changes: Format: 1.8 Date: Sat, 27 Oct 2018 15:57:28 +0200 Source: andi Binary: andi andi-dbgsym Architecture: i386 Version: 0.12-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.12-4) unstable; urgency=medium . * Team upload . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Andreas Tille ] * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright Checksums-Sha1: 687546402aca220b79b4d0b1667cb8370fa0f55e 46536 andi-dbgsym_0.12-4_i386.deb 546c7ff3f3e835c58c3201da6267a308235d1ab1 5484 andi_0.12-4_i386.buildinfo 8f0e1faccb1364f342b282b358f82d61889961a7 473356 andi_0.12-4_i386.deb Checksums-Sha256: f136437394025bea10e60c0c6a0002b67b1b813aee7c05baf4ee5a83004ae48d 46536 andi-dbgsym_0.12-4_i386.deb 7c74412b7c7ba94ef4131137f140de46d7d4cdfbb3c66b830a41cf13a81c2da5 5484 andi_0.12-4_i386.buildinfo 77ace6c143cfa6124260dc009ff670387c66f19665e276d3630030a1c2658544 473356 andi_0.12-4_i386.deb Files: e541c52535ab10d3bde766164104e1d0 46536 debug optional andi-dbgsym_0.12-4_i386.deb df2a42b2e962a790154b356d97b75a00 5484 science optional andi_0.12-4_i386.buildinfo 1bfbb60c1ca585f951ccc9cf3e7f6509 473356 science optional andi_0.12-4_i386.deb Fri Jun 21 19:29:49 UTC 2019 I: diffoscope 115 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.u6gHCSKudP/andi_0.12-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.u6gHCSKudP/andi_0.12-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.u6gHCSKudP/andi_0.12-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.u6gHCSKudP/b1/andi_0.12-4_i386.changes /srv/reproducible-results/rbuild-debian/tmp.u6gHCSKudP/b2/andi_0.12-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.349s) 0.349s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.044s 10 calls diffoscope.comparators.binary.FilesystemFile Fri Jun 21 19:29:51 UTC 2019 I: diffoscope 115 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 21 19:29:51 UTC 2019 I: andi from buster built successfully and reproducibly on i386. Fri Jun 21 19:29:52 UTC 2019 I: Submitting .buildinfo files to external archives: Fri Jun 21 19:29:52 UTC 2019 I: Submitting 8.0K b1/andi_0.12-4_i386.buildinfo.asc Fri Jun 21 19:30:07 UTC 2019 I: Submitting 8.0K b2/andi_0.12-4_i386.buildinfo.asc Fri Jun 21 19:30:36 UTC 2019 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 21 19:30:36 UTC 2019 I: Done submitting .buildinfo files. Fri Jun 21 19:30:36 UTC 2019 I: Removing signed andi_0.12-4_i386.buildinfo.asc files: removed './b1/andi_0.12-4_i386.buildinfo.asc' removed './b2/andi_0.12-4_i386.buildinfo.asc'