Sun Jan 17 19:52:45 UTC 2021 I: starting to build r-cran-rstan/buster/armhf on jenkins on '2021-01-17 19:52' Sun Jan 17 19:52:45 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_20/1229/console.log Sun Jan 17 19:52:46 UTC 2021 I: Downloading source for buster/r-cran-rstan=2.18.2-1 --2021-01-17 19:52:46-- http://deb.debian.org/debian/pool/main/r/r-cran-rstan/r-cran-rstan_2.18.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) Saving to: ‘r-cran-rstan_2.18.2-1.dsc’ 0K .. 100% 138M=0s 2021-01-17 19:52:46 (138 MB/s) - ‘r-cran-rstan_2.18.2-1.dsc’ saved [2221/2221] Sun Jan 17 19:52:46 UTC 2021 I: r-cran-rstan_2.18.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-cran-rstan Binary: r-cran-rstan Architecture: any Version: 2.18.2-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://cran.r-project.org/package=rstan Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-rstan Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-rstan.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-ggplot2 (>= 2.0.0), r-cran-stanheaders (>= 2.18.0), r-cran-inline, r-cran-gridextra, r-cran-rcpp (>= 0.12.0), r-cran-loo, r-cran-pkgbuild, r-cran-rcppeigen (>= 0.3.3.3.0), r-cran-bh Package-List: r-cran-rstan deb gnu-r optional arch=any Checksums-Sha1: 1594a2ec5aed71a022199e6f7a81c63471a8a13a 692976 r-cran-rstan_2.18.2.orig.tar.xz ead40d69e40f2ca94e243f3518b2087ab1e2b64f 2840 r-cran-rstan_2.18.2-1.debian.tar.xz Checksums-Sha256: cca9ddf253e582f0640e0da52b1dfcd64a6ff414553f5fba18ace2c27f71af96 692976 r-cran-rstan_2.18.2.orig.tar.xz 14e4fd7ee9c67223e265104bd27886babbb7a3210623e4d9b078ad0296cc2103 2840 r-cran-rstan_2.18.2-1.debian.tar.xz Files: 2358bc9ad11b107b23f5befb75041ccf 692976 r-cran-rstan_2.18.2.orig.tar.xz 369b9bca8f3d475b6ebc851534b1df87 2840 r-cran-rstan_2.18.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlv7yggRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFJkQ/+PrxSYHfr/wXomfFpKw4M3h6JUxGPyhIU QjROWIsWRX3M3L86qZq4LkWXjC974LC75EseDeq5oNDNHiLITb93D+luOyVZCMsT stMRlh+SJe96vYxh1aEObmCpk32RSNRJUxJzg9Q50kMWP61v/1Cc9066Hp7E730k U/l9t0xscAF4ko9r2E9C9i08yEAOyXXLOdixOsFNONUyg4W2Kb5Gu2pSH3OU4p7w 0gMa2+GMBb2m/IETMHsHJJxoX1Zq95qKt+fj8BI2Pd5foY/u9hrqADz1IT6GjRSu aBlbYDsDbWPpN9PTI9UGOqFF9uWG62wGQLoNq9tnj/BsfqzdCKXupn8G0atK3K2c /9nAxN1mA8vjerF+x5iWI5itW8DxgWwQ6xICl61p+b/bKHCIVnpB9vyhWDiG8V2K 4nfYIuvEdkS4VERPPrH5utHZCINGVMT6+DF9j80yj6rwiY5F1CKOsGqdA9UxCtaE 0L+HbQDdxSEwdiaPBnooVcr48oxhYakANjnxaKujcttWgsovTttpk0AvZsytgvVM DGIjHRVQ5wJFWZEuSaKBvAw2WR6RveX+FnlOsPLTS6XB7gH4bOxggyBsYXY1hkTh Y1scTY+1Q1FblMx8te6aLFamLBTIVLRVqhGczI76ogoYSMU+9uT6KbGw3X7XhamL /fELwTSjcuk= =uP+g -----END PGP SIGNATURE----- Sun Jan 17 19:52:46 UTC 2021 I: Checking whether the package is not for us Sun Jan 17 19:52:46 UTC 2021 I: Starting 1st build on remote node odxu4a-armhf-rb.debian.net. Sun Jan 17 19:52:46 UTC 2021 I: Preparing to do remote build '1' on odxu4a-armhf-rb.debian.net. Sun Jan 17 20:33:23 UTC 2021 I: Deleting $TMPDIR on odxu4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 17 07:52:54 -12 2021 I: pbuilder-time-stamp: 1610913174 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-rstan_2.18.2-1.dsc] I: copying [./r-cran-rstan_2.18.2.orig.tar.xz] I: copying [./r-cran-rstan_2.18.2-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 25 22:25:12 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-rstan_2.18.2-1.dsc dpkg-source: info: extracting r-cran-rstan in r-cran-rstan-2.18.2 dpkg-source: info: unpacking r-cran-rstan_2.18.2.orig.tar.xz dpkg-source: info: unpacking r-cran-rstan_2.18.2-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8952/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='1e73710b157e455a9abb1dae946d182c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8952' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.8HHUWLC26Q/pbuilderrc_tb2H --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.8HHUWLC26Q/b1 --logfile b1/build.log r-cran-rstan_2.18.2-1.dsc' SUDO_GID='114' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux odxu4a 5.9.0-0.bpo.5-armmp-lpae #1 SMP Debian 5.9.15-1~bpo10+1 (2020-12-31) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 20:26 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/8952/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-ggplot2 (>= 2.0.0), r-cran-stanheaders (>= 2.18.0), r-cran-inline, r-cran-gridextra, r-cran-rcpp (>= 0.12.0), r-cran-loo, r-cran-pkgbuild, r-cran-rcppeigen (>= 0.3.3.3.0), r-cran-bh dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2 (>= 2.0.0); however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stanheaders (>= 2.18.0); however: Package r-cran-stanheaders is not installed. pbuilder-satisfydepends-dummy depends on r-cran-inline; however: Package r-cran-inline is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridextra; however: Package r-cran-gridextra is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp (>= 0.12.0); however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-cran-loo; however: Package r-cran-loo is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pkgbuild; however: Package r-cran-pkgbuild is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcppeigen (>= 0.3.3.3.0); however: Package r-cran-rcppeigen is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.67-dev{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl4{a} libdatrie1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} lsb-base{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-assertthat{a} r-cran-backports{a} r-cran-bh{a} r-cran-callr{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-crayon{a} r-cran-desc{a} r-cran-digest{a} r-cran-fansi{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-inline{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-littler{a} r-cran-loo{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgbuild{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-prettyunits{a} r-cran-processx{a} r-cran-ps{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stanheaders{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-abind r-cran-bit64 r-cran-cliapp r-cran-data.table r-cran-dbi r-cran-domc r-cran-dplyr r-cran-hexbin r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lubridate r-cran-mapproj r-cran-mockery r-cran-mockr r-cran-rsqlite r-cran-runit r-cran-sp r-cran-testthat r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 128 MB of archives. After unpacking 439 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 8 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 11 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 12 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 13 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 15 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 16 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 18 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 19 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 21 http://deb.debian.org/debian buster/main armhf openssl armhf 1.1.1d-0+deb10u3 [818 kB] Get: 22 http://deb.debian.org/debian buster/main armhf ca-certificates all 20190110 [157 kB] Get: 23 http://deb.debian.org/debian buster/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 25 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 28 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 30 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+deb10u1 [597 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 36 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 37 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 38 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 39 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 40 http://deb.debian.org/debian buster/main armhf zip armhf 3.0-11+b1 [228 kB] Get: 41 http://deb.debian.org/debian buster/main armhf unzip armhf 6.0-23+deb10u1 [158 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libpaper1 armhf 1.1.28 [20.5 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libpaper-utils armhf 1.1.28 [17.6 kB] Get: 44 http://deb.debian.org/debian buster/main armhf xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB] Get: 46 http://deb.debian.org/debian buster/main armhf libblas3 armhf 3.8.0-2 [109 kB] Get: 47 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 48 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u2 [322 kB] Get: 50 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB] Get: 51 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1+deb10u1 [294 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1+deb10u1 [698 kB] Get: 59 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get: 60 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get: 61 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4 [616 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3+deb10u1 [62.3 kB] Get: 66 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3+deb10u1 [119 kB] Get: 67 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3+deb10u1 [323 kB] Get: 68 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3+deb10u1 [137 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB] Get: 71 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u4 [89.8 kB] Get: 72 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u4 [202 kB] Get: 73 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get: 75 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get: 76 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libcurl4 armhf 7.64.0-4+deb10u1 [297 kB] Get: 78 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 79 http://deb.debian.org/debian buster/main armhf x11-common all 1:7.7+19 [251 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo armhf 1:1.5.2-2+deb10u1 [113 kB] Get: 82 http://deb.debian.org/debian buster/main armhf liblapack3 armhf 3.8.0-2 [1631 kB] Get: 83 http://deb.debian.org/debian buster/main armhf fontconfig armhf 2.13.1-2 [404 kB] Get: 84 http://deb.debian.org/debian buster/main armhf libfribidi0 armhf 1.0.5-3.1+deb10u1 [61.7 kB] Get: 85 http://deb.debian.org/debian buster/main armhf libthai-data all 0.1.28-2 [170 kB] Get: 86 http://deb.debian.org/debian buster/main armhf libdatrie1 armhf 0.2.12-2 [35.8 kB] Get: 87 http://deb.debian.org/debian buster/main armhf libthai0 armhf 0.1.28-2 [50.7 kB] Get: 88 http://deb.debian.org/debian buster/main armhf libpango-1.0-0 armhf 1.42.4-8~deb10u1 [169 kB] Get: 89 http://deb.debian.org/debian buster/main armhf libgraphite2-3 armhf 1.3.13-7 [70.3 kB] Get: 90 http://deb.debian.org/debian buster/main armhf libharfbuzz0b armhf 2.3.1-1 [1151 kB] Get: 91 http://deb.debian.org/debian buster/main armhf libpangoft2-1.0-0 armhf 1.42.4-8~deb10u1 [62.7 kB] Get: 92 http://deb.debian.org/debian buster/main armhf libpangocairo-1.0-0 armhf 1.42.4-8~deb10u1 [52.2 kB] Get: 93 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 94 http://deb.debian.org/debian buster/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 95 http://deb.debian.org/debian buster/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [897 kB] Get: 96 http://deb.debian.org/debian buster/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 97 http://deb.debian.org/debian buster/main armhf libwebp6 armhf 0.6.1-2 [229 kB] Get: 98 http://deb.debian.org/debian buster/main armhf libtiff5 armhf 4.1.0+git191117-2~deb10u1 [252 kB] Get: 99 http://deb.debian.org/debian buster/main armhf libxft2 armhf 2.3.2-2 [50.1 kB] Get: 100 http://deb.debian.org/debian buster/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 101 http://deb.debian.org/debian buster/main armhf libtk8.6 armhf 8.6.9-2 [678 kB] Get: 102 http://deb.debian.org/debian buster/main armhf libxt6 armhf 1:1.1.5-1+b3 [159 kB] Get: 103 http://deb.debian.org/debian buster/main armhf r-base-core armhf 3.5.2-1 [23.7 MB] Get: 104 http://deb.debian.org/debian buster/main armhf libgfortran-8-dev armhf 8.3.0-6 [260 kB] Get: 105 http://deb.debian.org/debian buster/main armhf gfortran-8 armhf 8.3.0-6 [7219 kB] Get: 106 http://deb.debian.org/debian buster/main armhf gfortran armhf 4:8.3.0-1 [1424 B] Get: 107 http://deb.debian.org/debian buster/main armhf libblas-dev armhf 3.8.0-2 [117 kB] Get: 108 http://deb.debian.org/debian buster/main armhf liblapack-dev armhf 3.8.0-2 [1680 kB] Get: 109 http://deb.debian.org/debian buster/main armhf libncurses-dev armhf 6.1+20181013-2+deb10u2 [295 kB] Get: 110 http://deb.debian.org/debian buster/main armhf libncurses5-dev armhf 6.1+20181013-2+deb10u2 [948 B] Get: 111 http://deb.debian.org/debian buster/main armhf libreadline-dev armhf 7.0-5 [121 kB] Get: 112 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+deb10u1 [184 kB] Get: 113 http://deb.debian.org/debian buster/main armhf libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get: 114 http://deb.debian.org/debian buster/main armhf libpcre16-3 armhf 2:8.39-12 [238 kB] Get: 115 http://deb.debian.org/debian buster/main armhf libpcre32-3 armhf 2:8.39-12 [231 kB] Get: 116 http://deb.debian.org/debian buster/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB] Get: 117 http://deb.debian.org/debian buster/main armhf libpcre3-dev armhf 2:8.39-12 [585 kB] Get: 118 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Get: 119 http://deb.debian.org/debian buster/main armhf libpng-dev armhf 1.6.36-6 [286 kB] Get: 120 http://deb.debian.org/debian buster/main armhf libbz2-dev armhf 1.0.6-9.2~deb10u1 [28.8 kB] Get: 121 http://deb.debian.org/debian buster/main armhf liblzma-dev armhf 5.2.4-1 [204 kB] Get: 122 http://deb.debian.org/debian buster/main armhf icu-devtools armhf 63.1-6+deb10u1 [168 kB] Get: 123 http://deb.debian.org/debian buster/main armhf libicu-dev armhf 63.1-6+deb10u1 [8940 kB] Get: 124 http://deb.debian.org/debian buster/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.3 kB] Get: 125 http://deb.debian.org/debian buster/main armhf xauth armhf 1:1.0.10-1 [37.4 kB] Get: 126 http://deb.debian.org/debian buster/main armhf pkg-config armhf 0.29-6 [60.7 kB] Get: 127 http://deb.debian.org/debian buster/main armhf r-base-dev all 3.5.2-1 [4480 B] Get: 128 http://deb.debian.org/debian buster/main armhf libfile-which-perl all 1.23-1 [16.6 kB] Get: 129 http://deb.debian.org/debian buster/main armhf libswitch-perl all 2.17-2 [20.5 kB] Get: 130 http://deb.debian.org/debian buster/main armhf dh-r all 20190121 [35.1 kB] Get: 131 http://deb.debian.org/debian buster/main armhf libboost1.67-dev armhf 1.67.0-13+deb10u1 [8388 kB] Get: 132 http://deb.debian.org/debian buster/main armhf libboost-dev armhf 1.67.0.1 [3860 B] Get: 133 http://deb.debian.org/debian buster/main armhf r-cran-littler armhf 0.3.6-1 [305 kB] Get: 134 http://deb.debian.org/debian buster/main armhf littler all 0.3.6-1 [13.6 kB] Get: 135 http://deb.debian.org/debian buster/main armhf r-cran-assertthat all 0.2.0-2 [54.4 kB] Get: 136 http://deb.debian.org/debian buster/main armhf r-cran-backports armhf 1.1.3-1 [55.2 kB] Get: 137 http://deb.debian.org/debian buster/main armhf r-cran-bh all 1.66.0-1 [5072 B] Get: 138 http://deb.debian.org/debian buster/main armhf r-cran-ps armhf 1.3.0-1 [205 kB] Get: 139 http://deb.debian.org/debian buster/main armhf r-cran-r6 all 2.4.0-1 [75.2 kB] Get: 140 http://deb.debian.org/debian buster/main armhf r-cran-processx armhf 3.2.1-1 [178 kB] Get: 141 http://deb.debian.org/debian buster/main armhf r-cran-callr all 3.1.1-3 [243 kB] Get: 142 http://deb.debian.org/debian buster/main armhf r-cran-crayon all 1.3.4-4 [750 kB] Get: 143 http://deb.debian.org/debian buster/main armhf r-cran-cli all 1.0.1-1 [519 kB] Get: 144 http://deb.debian.org/debian buster/main armhf r-cran-colorspace armhf 1.4-0+dfsg-1 [1577 kB] Get: 145 http://deb.debian.org/debian buster/main armhf r-cran-rprojroot all 1.3-2-2 [96.9 kB] Get: 146 http://deb.debian.org/debian buster/main armhf r-cran-desc all 1.2.0-2 [290 kB] Get: 147 http://deb.debian.org/debian buster/main armhf r-cran-digest armhf 0.6.18-1 [134 kB] Get: 148 http://deb.debian.org/debian buster/main armhf r-cran-fansi armhf 0.4.0-1 [330 kB] Get: 149 http://deb.debian.org/debian buster/main armhf r-cran-gtable all 0.2.0-3 [93.6 kB] Get: 150 http://deb.debian.org/debian buster/main armhf r-cran-lazyeval armhf 0.2.1-3 [137 kB] Get: 151 http://deb.debian.org/debian buster/main armhf r-cran-mass armhf 7.3-51.1-1 [1101 kB] Get: 152 http://deb.debian.org/debian buster/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB] Get: 153 http://deb.debian.org/debian buster/main armhf r-cran-nlme armhf 3.1.137-1+b3 [2200 kB] Get: 154 http://deb.debian.org/debian buster/main armhf r-cran-matrix armhf 1.2-15-1 [3373 kB] Get: 155 http://deb.debian.org/debian buster/main armhf r-cran-mgcv armhf 1.8-27-1 [2637 kB] Get: 156 http://deb.debian.org/debian buster/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get: 157 http://deb.debian.org/debian buster/main armhf r-cran-rcpp armhf 1.0.0-1 [3360 kB] Get: 158 http://deb.debian.org/debian buster/main armhf r-cran-plyr armhf 1.8.4-2 [811 kB] Get: 159 http://deb.debian.org/debian buster/main armhf r-cran-glue armhf 1.3.0-1 [91.4 kB] Get: 160 http://deb.debian.org/debian buster/main armhf r-cran-magrittr all 1.5-5 [152 kB] Get: 161 http://deb.debian.org/debian buster/main armhf r-cran-stringi armhf 1.2.4-2 [8409 kB] Get: 162 http://deb.debian.org/debian buster/main armhf r-cran-stringr all 1.4.0-1 [198 kB] Get: 163 http://deb.debian.org/debian buster/main armhf r-cran-reshape2 armhf 1.4.3-2 [109 kB] Get: 164 http://deb.debian.org/debian buster/main armhf r-cran-rlang armhf 0.3.1-2 [1074 kB] Get: 165 http://deb.debian.org/debian buster/main armhf r-cran-labeling all 0.3-3 [61.4 kB] Get: 166 http://deb.debian.org/debian buster/main armhf r-cran-munsell all 0.5.0-1 [235 kB] Get: 167 http://deb.debian.org/debian buster/main armhf r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get: 168 http://deb.debian.org/debian buster/main armhf r-cran-viridislite all 0.3.0-3 [59.2 kB] Get: 169 http://deb.debian.org/debian buster/main armhf r-cran-scales armhf 1.0.0-2 [542 kB] Get: 170 http://deb.debian.org/debian buster/main armhf r-cran-utf8 armhf 1.1.4-1+b1 [127 kB] Get: 171 http://deb.debian.org/debian buster/main armhf r-cran-pillar all 1.3.1-1 [203 kB] Get: 172 http://deb.debian.org/debian buster/main armhf r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get: 173 http://deb.debian.org/debian buster/main armhf r-cran-tibble armhf 2.0.1-1 [656 kB] Get: 174 http://deb.debian.org/debian buster/main armhf r-cran-withr all 2.1.2-3 [152 kB] Get: 175 http://deb.debian.org/debian buster/main armhf r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get: 176 http://deb.debian.org/debian buster/main armhf r-cran-gridextra all 2.3-2 [1023 kB] Get: 177 http://deb.debian.org/debian buster/main armhf r-cran-inline all 0.3.15-2 [123 kB] Get: 178 http://deb.debian.org/debian buster/main armhf r-cran-matrixstats armhf 0.54.0-1 [575 kB] Get: 179 http://deb.debian.org/debian buster/main armhf r-cran-loo all 2.0.0-2 [766 kB] Get: 180 http://deb.debian.org/debian buster/main armhf r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get: 181 http://deb.debian.org/debian buster/main armhf r-cran-pkgbuild all 1.0.2-1 [130 kB] Get: 182 http://deb.debian.org/debian buster/main armhf r-cran-rcppeigen armhf 0.3.3.5.0-1 [1336 kB] Get: 183 http://deb.debian.org/debian buster/main armhf r-cran-stanheaders armhf 2.18.1-1 [694 kB] Fetched 128 MB in 20s (6513 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../002-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../004-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../006-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... 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Setting up libdatrie1:armhf (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ... Setting up unzip (6.0-23+deb10u1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:armhf (1.36.0-2+deb10u1) ... Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u4) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up libkrb5support0:armhf (1.17-3+deb10u1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up zip (3.0-11+b1) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:armhf (1:1.5.2-2+deb10u1) ... Setting up libswitch-perl (2.17-2) ... Setting up libx11-data (2:1.6.7-1+deb10u1) ... Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+deb10u1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libfribidi0:armhf (1.0.5-3.1+deb10u1) ... Setting up libpng16-16:armhf (1.6.36-6) ... Setting up libpcre32-3:armhf (2:8.39-12) ... Setting up libtcl8.6:armhf (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up pkg-config (0.29-6) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libk5crypto3:armhf (1.17-3+deb10u1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:armhf (8.3.0-6) ... Setting up liblzma-dev:armhf (5.2.4-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:armhf (1.8.0-2.1) ... Setting up libkrb5-3:armhf (1.17-3+deb10u1) ... Setting up libboost-dev:armhf (1.67.0.1) ... Setting up libtiff5:armhf (4.1.0+git191117-2~deb10u1) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:armhf (63.1-6+deb10u1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+deb10u1) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up dctrl-tools (2.24-3) ... Setting up libreadline7:armhf (7.0-5) ... Setting up libbz2-dev:armhf (1.0.6-9.2~deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up r-cran-bh (1.66.0-1) ... Setting up libgfortran-8-dev:armhf (8.3.0-6) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libncurses-dev:armhf (6.1+20181013-2+deb10u2) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libpcre3-dev:armhf (2:8.39-12) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libpng-dev:armhf (1.6.36-6) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up libldap-2.4-2:armhf (2.4.47+dfsg-3+deb10u4) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libreadline-dev:armhf (7.0-5) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libthai0:armhf (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libblas3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libfreetype6:armhf (2.9.1-3+deb10u2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-3+deb10u1) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libncurses5-dev:armhf (6.1+20181013-2+deb10u2) ... Setting up libcurl4:armhf (7.64.0-4+deb10u1) ... Setting up libx11-6:armhf (2:1.6.7-1+deb10u1) ... Setting up libharfbuzz0b:armhf (2.3.1-1) ... 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I: Building the package I: Running cd /build/r-cran-rstan-2.18.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package r-cran-rstan dpkg-buildpackage: info: source version 2.18.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: rstan Version: 2.18.2 I: Building using R version 3.5.2-1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Mon, 26 Nov 2018 11:10:19 +0100 mkdir -p /build/r-cran-rstan-2.18.2/debian/r-cran-rstan/usr/lib/R/site-library R CMD INSTALL -l /build/r-cran-rstan-2.18.2/debian/r-cran-rstan/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 26 Nov 2018 11:10:19 +0100'" * installing *source* package 'rstan' ... ** package 'rstan' successfully unpacked and MD5 sums checked ** libs make[1]: Entering directory '/build/r-cran-rstan-2.18.2/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chains.cpp -o chains.o In file included from /usr/include/c++/8/vector:69, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:7, from chains.cpp:19: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:288:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:288:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:7, from chains.cpp:19: /usr/include/c++/8/bits/stl_vector.h: In function 'SEXPREC* split_potential_scale_reduction(SEXP, SEXP)': /usr/include/c++/8/bits/stl_vector.h:1512:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } ^~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1512:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 { _M_assign_aux(__first, __last, std::__iterator_category(__first)); } ^~~~~~~~~~~~~ g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__ast_def.cpp -o lang__ast_def.o In file included from /usr/lib/R/site-library/StanHeaders/include/src/stan/lang/ast_def.cpp:119, from lang__ast_def.cpp:18: /usr/lib/R/site-library/StanHeaders/include/src/stan/lang/ast/sigs/function_signatures_def.hpp: In constructor 'stan::lang::function_signatures::function_signatures()': /usr/lib/R/site-library/StanHeaders/include/src/stan/lang/ast/sigs/function_signatures_def.hpp:485:5: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without function_signatures::function_signatures() { ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__bare_type_grammar_inst.cpp -o lang__grammars__bare_type_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__expression07_grammar_inst.cpp -o lang__grammars__expression07_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__expression_grammar_inst.cpp -o lang__grammars__expression_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__functions_grammar_inst.cpp -o lang__grammars__functions_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__indexes_grammar_inst.cpp -o lang__grammars__indexes_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__program_grammar_inst.cpp -o lang__grammars__program_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__semantic_actions.cpp -o lang__grammars__semantic_actions.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__statement_2_grammar_inst.cpp -o lang__grammars__statement_2_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__statement_grammar_inst.cpp -o lang__grammars__statement_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__term_grammar_inst.cpp -o lang__grammars__term_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__var_deccls_grammar_inst.cpp -o lang__grammars__var_deccls_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__whitespace_grammar_inst.cpp -o lang__grammars__whitespace_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c misc.cpp -o misc.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pointer-tools.cpp -o pointer-tools.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sparse_extractors.cpp -o sparse_extractors.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QoNLjt/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stanc.cpp -o stanc.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o rstan.so chains.o init.o lang__ast_def.o lang__grammars__bare_type_grammar_inst.o lang__grammars__expression07_grammar_inst.o lang__grammars__expression_grammar_inst.o lang__grammars__functions_grammar_inst.o lang__grammars__indexes_grammar_inst.o lang__grammars__program_grammar_inst.o lang__grammars__semantic_actions.o lang__grammars__statement_2_grammar_inst.o lang__grammars__statement_grammar_inst.o lang__grammars__term_grammar_inst.o lang__grammars__var_deccls_grammar_inst.o lang__grammars__whitespace_grammar_inst.o misc.o pointer-tools.o sparse_extractors.o stanc.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-cran-rstan-2.18.2/src' make[1]: Entering directory '/build/r-cran-rstan-2.18.2/src' make[1]: Leaving directory '/build/r-cran-rstan-2.18.2/src' installing to /build/r-cran-rstan-2.18.2/debian/r-cran-rstan/usr/lib/R/site-library/rstan/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rstan) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.4.0) I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 2.0.0) I: Using r-cran-stanheaders for Depends:StanHeaders (>= 2.18.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-rcppeigen for Suggests:RcppEigen (>= 0.3.3.3.0) I: Using r-cran-bh for Suggests:BH (>= 1.66) I: Using r-cran-kernsmooth for Suggests:KernSmooth W: Cannot find a debian package for Suggests:shinystan (>= 2.3.0) I: Using r-cran-bayesplot for Suggests:bayesplot (>= 1.5.0) I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-rstantools for Suggests:rstantools I: Using r-cran-rstudioapi for Suggests:rstudioapi I: Using r-cran-matrix for Suggests:Matrix I: Using r-cran-knitr for Suggests:knitr (>= 1.15.1) I: Using r-cran-inline for Imports:inline I: Using r-cran-gridextra for Imports:gridExtra (>= 2.0.0) I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0) I: Using r-cran-loo for Imports:loo (>= 2.0.0) I: Using r-cran-pkgbuild for Imports:pkgbuild Create lintian-override for package-contains-documentation-outside-usr-share-doc due to debian/r-cran-rstan/usr/lib/R/site-library/rstan/doc/stanfit-objects.Rmd debian/r-cran-rstan/usr/lib/R/site-library/rstan/doc/rstan.Rmd debian/r-cran-rstan/usr/lib/R/site-library/rstan/doc/external.Rmd dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installinit -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-rstan-dbgsym' in '../r-cran-rstan-dbgsym_2.18.2-1_armhf.deb'. dpkg-deb: building package 'r-cran-rstan' in '../r-cran-rstan_2.18.2-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../r-cran-rstan_2.18.2-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8952 and its subdirectories I: Current time: Sun Jan 17 08:31:46 -12 2021 I: pbuilder-time-stamp: 1610915506 Sun Jan 17 20:33:25 UTC 2021 I: 1st build successful. Starting 2nd build on remote node jtk1b-armhf-rb.debian.net. Sun Jan 17 20:33:25 UTC 2021 I: Preparing to do remote build '2' on jtk1b-armhf-rb.debian.net. Sun Jan 17 23:53:04 UTC 2021 I: Deleting $TMPDIR on jtk1b-armhf-rb.debian.net. Sun Jan 17 23:53:08 UTC 2021 I: r-cran-rstan_2.18.2-1_armhf.changes: Format: 1.8 Date: Mon, 26 Nov 2018 11:10:19 +0100 Source: r-cran-rstan Binary: r-cran-rstan r-cran-rstan-dbgsym Architecture: armhf Version: 2.18.2-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-cran-rstan - GNU R interface to Stan Changes: r-cran-rstan (2.18.2-1) unstable; urgency=medium . * Drop now unused override since dh-r cares for this * New upstream version * libboost-dev is now 1.67.0.1 thus r-cran-bh becomes usable again Checksums-Sha1: 721596aa8aa3142a0894b448f185ed969cce342b 34741852 r-cran-rstan-dbgsym_2.18.2-1_armhf.deb fe2492a4750fede06ab228910a4445d37a70288e 9306 r-cran-rstan_2.18.2-1_armhf.buildinfo fe9cb57615c2836f9eca8066a6c6dd90aded0358 1818340 r-cran-rstan_2.18.2-1_armhf.deb Checksums-Sha256: 618951ec63368d86bfd509dc64c7b50a0389c8f0b77220d4af6f2858488ada6c 34741852 r-cran-rstan-dbgsym_2.18.2-1_armhf.deb 64cb561808e1a9a8641cfd628ed3c8acbb2852262bc8657aedac9a475b54f4b9 9306 r-cran-rstan_2.18.2-1_armhf.buildinfo 00c2a801406cae13b3b784fade06584816067fe59ac0fc58df3178236db7c0be 1818340 r-cran-rstan_2.18.2-1_armhf.deb Files: 3d505b376ecee0773704504c4c1f3b16 34741852 debug optional r-cran-rstan-dbgsym_2.18.2-1_armhf.deb 8d5ada283a55bb6c195b40c2862845b6 9306 gnu-r optional r-cran-rstan_2.18.2-1_armhf.buildinfo 958a5772aa7ad9b6d3786a731bd67d16 1818340 gnu-r optional r-cran-rstan_2.18.2-1_armhf.deb Sun Jan 17 23:53:18 UTC 2021 I: diffoscope 163 will be used to compare the two builds: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/diffoscope/main.py", line 763, in main sys.exit(run_diffoscope(parsed_args)) File "/usr/lib/python3/dist-packages/diffoscope/main.py", line 717, in run_diffoscope difference = compare_root_paths(path1, path2) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 69, in compare_root_paths difference = compare_files(file1, file2) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/debian.py", line 236, in compare differences = super().compare(other, *args, **kwargs) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 478, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 425, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 194, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 478, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 425, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 194, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 478, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 425, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 194, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 478, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 425, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 194, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 478, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 395, in _compare_using_details details.extend(self.compare_details(other, source)) File "/usr/lib/python3/dist-packages/diffoscope/comparators/rdata.py", line 171, in compare_details return [Difference.from_operation(RdbReader, a, b)] File "/usr/lib/python3/dist-packages/diffoscope/difference.py", line 255, in from_operation klass, path1, path2, *args, **kwargs File "/usr/lib/python3/dist-packages/diffoscope/difference.py", line 275, in from_operation_exc feeder1, operation1, excluded1 = operation_and_feeder(path1) File "/usr/lib/python3/dist-packages/diffoscope/difference.py", line 272, in operation_and_feeder operation.start() File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/command.py", line 52, in start stderr=subprocess.PIPE, File "/usr/lib/python3.7/subprocess.py", line 462, in run raise ValueError('stdin and input arguments may not both be used.') ValueError: stdin and input arguments may not both be used. # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.8HHUWLC26Q/r-cran-rstan_2.18.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.8HHUWLC26Q/r-cran-rstan_2.18.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.8HHUWLC26Q/r-cran-rstan_2.18.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.8HHUWLC26Q/b1/r-cran-rstan_2.18.2-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.8HHUWLC26Q/b2/r-cran-rstan_2.18.2-1_armhf.changes ## close_archive (total time: 0.000s) 0.000s 2 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.tar.TarContainer ## command (total time: 4.169s) 3.381s 6 calls xz 0.745s 31 calls diff 0.043s 4 calls cmp 0.001s 7 calls cmp (internal) 0.000s 3 calls Rscript ## compare_files (cumulative) (total time: 0.294s) 0.178s 1 call abc.XzFile 0.098s 1 call abc.TarFile 0.017s 1 call abc.Md5sumsFile ## container_extract (total time: 6.963s) 3.382s 6 calls diffoscope.comparators.xz.XzContainer 2.664s 148 calls diffoscope.comparators.deb.DebTarContainer 0.913s 8 calls diffoscope.comparators.deb.DebContainer 0.004s 6 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.050s) 0.016s 1 call abc.DebDataTarFile 0.012s 2 calls abc.XzFile 0.012s 1 call abc.RdbFile 0.009s 1 call abc.DebFile 0.000s 2 calls abc.TextFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile ## main (total time: 0.019s) 0.019s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## recognizes (total time: 2.615s) 2.172s 10 calls diffoscope.comparators.binary.FilesystemFile 0.374s 528 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.061s 230 calls diffoscope.comparators.utils.archive.ArchiveMember 0.008s 44 calls diffoscope.comparators.debian.DebControlMember 0.000s 8 calls abc.DotChangesFile 0.000s 14 calls abc.Md5sumsFile Mon Jan 18 00:09:12 UTC 2021 E: r-cran-rstan failed to build reproducibly in buster on armhf. Mon Jan 18 00:09:12 UTC 2021 W: diffoscope 163 produced no output (which is strange). Mon Jan 18 00:09:19 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jan 18 00:09:19 UTC 2021 I: Submitting 12K b1/r-cran-rstan_2.18.2-1_armhf.buildinfo.asc Mon Jan 18 00:09:22 UTC 2021 I: Submitting 12K b2/r-cran-rstan_2.18.2-1_armhf.buildinfo.asc Mon Jan 18 00:09:27 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 18 00:09:27 UTC 2021 I: Done submitting .buildinfo files. Mon Jan 18 00:09:27 UTC 2021 I: Removing signed r-cran-rstan_2.18.2-1_armhf.buildinfo.asc files: removed './b1/r-cran-rstan_2.18.2-1_armhf.buildinfo.asc' removed './b2/r-cran-rstan_2.18.2-1_armhf.buildinfo.asc' Mon Jan 18 00:09:31 UTC 2021 I: Artifacts from this build have been preserved. They will be available for 24h only, so download them now. WARNING: You shouldn't trust packages downloaded from this host, they can contain malware or the worst of your fears, packaged nicely in debian format. If you are aware of this and just want to use these artifacts to investigate why diffoscope 163 had issues, you can download the artifacts from the following location: https://tests.reproducible-builds.org/debian/artifacts/r00t-me/r-cran-rstan_buster_armhf_tmp-xTvZ8/