Wed Jun 17 11:00:33 UTC 2020 I: starting to build maffilter/buster/armhf on jenkins on '2020-06-17 11:00' Wed Jun 17 11:00:33 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_49/2555/console.log Wed Jun 17 11:00:33 UTC 2020 I: Downloading source for buster/maffilter=1.3.1+dfsg-1 --2020-06-17 11:00:34-- http://deb.debian.org/debian/pool/main/m/maffilter/maffilter_1.3.1+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2210 (2.2K) Saving to: ‘maffilter_1.3.1+dfsg-1.dsc’ 0K .. 100% 123M=0s 2020-06-17 11:00:34 (123 MB/s) - ‘maffilter_1.3.1+dfsg-1.dsc’ saved [2210/2210] Wed Jun 17 11:00:34 UTC 2020 I: maffilter_1.3.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: maffilter Binary: maffilter, maffilter-examples Architecture: any all Version: 1.3.1+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Julien Dutheil Homepage: https://jydu.github.io/maffilter/ Standards-Version: 4.2.0 Vcs-Browser: https://salsa.debian.org/med-team/maffilter Vcs-Git: https://salsa.debian.org/med-team/maffilter.git Build-Depends: debhelper (>= 11~), cmake, texinfo, libbpp-phyl-omics-dev (>= 2.4.1), libboost-iostreams-dev (>= 1.54.0), zlib1g-dev, libbz2-dev Package-List: maffilter deb science optional arch=any maffilter-examples deb science optional arch=all Checksums-Sha1: 52fb7acc20ef914ef4e44676b316cf3753c46c9b 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 39f6cb0c5ed0fa6a83df3af781aaaa2e42356ee6 3400 maffilter_1.3.1+dfsg-1.debian.tar.xz Checksums-Sha256: 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 78668340 maffilter_1.3.1+dfsg.orig.tar.xz fef85a5dc6cd0a29b5435eae8e9b6c271230ea355ae03fd0c27703cda73d614b 3400 maffilter_1.3.1+dfsg-1.debian.tar.xz Files: 3548c76d884bacc4ce267d70f304435e 78668340 maffilter_1.3.1+dfsg.orig.tar.xz 8f1e5f1c3a01889b4a803daf0eaa5ca5 3400 maffilter_1.3.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt/FJoOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGLcA//VXmdWoN3dxapHOlX11fhO8ryGsWtprEeAtEq lFx9DV7yxcF+ckr8JS/8Pthh+rzWiue7VBqwmYy/6J0PnOVlbiE6CsRxGBdjLlJj Kb1LV2Jf9kkSdj+UTkvHgWSiiVW40Z1waZPyvO2u5VTHRLFQkW9ueZaFpJCjw/4m XkiuFoeW0ueEkEELdwJHy1xBErCveOZeFbqkCEZITW6oahdk7pv0UfLNJ6Vm6Piy xg73eDm/8RyppbHKDkN1zza4UmJOIKFb3qb0SJdMm5XSoRayMd8UMOfuZu78NNdb ac5vlihlGnKI7G17pNxxtEdLc0hBi2luEOv7vAyZ9G0OYhwztlsmH/pGmX2gRvtn Pxs2hGPpSxsxYYfxzZMdKh5ucCetSFBE8dnA4CWKPq+yXPo1izq4WByBlQLXZIe1 +50/ePwErGmlDQUHu/qLfQL2TF0Fb0CppXv2YfYS5RprB/duyAPVf9/uJw00tDaD ehRzuC0eRMh9/I+mDxi8YL/5e3PUD8Pr8lZcw+yvktHxPo4IcDAaFZPnypiOHux5 ZLwMrchGYcXUDelCAHxYrGADctg7nbyno3b0GmxUuAiB9oV7ISaYlWAhG0Bwn6ps 4PV0PpiLUJoq8jvFF3Sq/SZKQaP8eOSC+XA+LsJJn7TtnaDzXRKJ2TMIt3cJH805 oGxAbsg= =J/dG -----END PGP SIGNATURE----- Wed Jun 17 11:00:34 UTC 2020 I: Checking whether the package is not for us Wed Jun 17 11:00:34 UTC 2020 I: Starting 1st build on remote node jtx1b-armhf-rb.debian.net. Wed Jun 17 11:00:34 UTC 2020 I: Preparing to do remote build '1' on jtx1b-armhf-rb.debian.net. Wed Jun 17 11:25:40 UTC 2020 I: Deleting $TMPDIR on jtx1b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 16 23:01:09 -12 2020 I: pbuilder-time-stamp: 1592391669 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [maffilter_1.3.1+dfsg-1.dsc] I: copying [./maffilter_1.3.1+dfsg.orig.tar.xz] I: copying [./maffilter_1.3.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 23 08:10:02 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./maffilter_1.3.1+dfsg-1.dsc dpkg-source: info: extracting maffilter in maffilter-1.3.1+dfsg dpkg-source: info: unpacking maffilter_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking maffilter_1.3.1+dfsg-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5048/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='a6a4d752b9094bc5aa0477588c72ed7b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5048' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.VdQnQFLRe8/pbuilderrc_7A3j --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.VdQnQFLRe8/b1 --logfile b1/build.log maffilter_1.3.1+dfsg-1.dsc' SUDO_GID='114' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux jtx1b 4.19.0-9-arm64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) aarch64 GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 15 20:25 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/5048/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, texinfo, libbpp-phyl-omics-dev (>= 2.4.1), libboost-iostreams-dev (>= 1.54.0), zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-omics-dev (>= 2.4.1); however: Package libbpp-phyl-omics-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev (>= 1.54.0); however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-iostreams-dev{a} libboost-iostreams1.67-dev{a} libboost-regex1.67-dev{a} libboost-regex1.67.0{a} libboost1.67-dev{a} libbpp-core-dev{a} libbpp-core4{a} libbpp-phyl-dev{a} libbpp-phyl-omics-dev{a} libbpp-phyl-omics3{a} libbpp-phyl12{a} libbpp-seq-dev{a} libbpp-seq-omics-dev{a} libbpp-seq-omics3{a} libbpp-seq12{a} libbsd0{a} libbz2-dev{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libicu-dev{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} ucf{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 55.5 MB of archives. After unpacking 341 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 9 http://deb.debian.org/debian buster/main armhf tex-common all 6.11 [53.1 kB] Get: 10 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libprocps7 armhf 2:3.3.15-2 [58.7 kB] Get: 12 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 13 http://deb.debian.org/debian buster/main armhf procps armhf 2:3.3.15-2 [248 kB] Get: 14 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 16 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 17 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 19 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 20 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 21 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 22 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 23 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 24 http://deb.debian.org/debian buster/main armhf cmake-data all 3.13.4-1 [1476 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libarchive13 armhf 3.3.3-4+deb10u1 [277 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u2 [202 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get: 40 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libcurl4 armhf 7.64.0-4+deb10u1 [297 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libjsoncpp1 armhf 1.7.4-3 [67.8 kB] Get: 45 http://deb.debian.org/debian buster/main armhf librhash0 armhf 1.3.8-1 [134 kB] Get: 46 http://deb.debian.org/debian buster/main armhf libuv1 armhf 1.24.1-1 [98.0 kB] Get: 47 http://deb.debian.org/debian buster/main armhf cmake armhf 3.13.4-1 [2848 kB] Get: 48 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 49 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 52 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 54 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 57 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 58 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 59 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 60 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 61 http://deb.debian.org/debian buster/main armhf icu-devtools armhf 63.1-6+deb10u1 [168 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libboost1.67-dev armhf 1.67.0-13+deb10u1 [8388 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libboost-regex1.67.0 armhf 1.67.0-13+deb10u1 [438 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libicu-dev armhf 63.1-6+deb10u1 [8940 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libboost-regex1.67-dev armhf 1.67.0-13+deb10u1 [538 kB] Get: 66 http://deb.debian.org/debian buster/main armhf libboost-iostreams1.67-dev armhf 1.67.0-13+deb10u1 [254 kB] Get: 67 http://deb.debian.org/debian buster/main armhf libboost-iostreams-dev armhf 1.67.0.1 [3632 B] Get: 68 http://deb.debian.org/debian buster/main armhf libbpp-core4 armhf 2.4.1-3 [510 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libbpp-core-dev armhf 2.4.1-3 [951 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libbpp-seq12 armhf 2.4.1-3 [439 kB] Get: 71 http://deb.debian.org/debian buster/main armhf libbpp-phyl12 armhf 2.4.1-2 [1367 kB] Get: 72 http://deb.debian.org/debian buster/main armhf libbpp-seq-dev armhf 2.4.1-3 [753 kB] Get: 73 http://deb.debian.org/debian buster/main armhf libbpp-phyl-dev armhf 2.4.1-2 [3087 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libbpp-seq-omics3 armhf 2.4.1-3 [195 kB] Get: 75 http://deb.debian.org/debian buster/main armhf libbpp-phyl-omics3 armhf 2.4.1-1 [59.5 kB] Get: 76 http://deb.debian.org/debian buster/main armhf libbpp-seq-omics-dev armhf 2.4.1-3 [397 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libbpp-phyl-omics-dev armhf 2.4.1-1 [130 kB] Get: 78 http://deb.debian.org/debian buster/main armhf libbz2-dev armhf 1.0.6-9.2~deb10u1 [28.8 kB] Get: 79 http://deb.debian.org/debian buster/main armhf libtext-unidecode-perl all 1.30-1 [103 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libxml-sax-base-perl all 1.09-1 [20.4 kB] Get: 82 http://deb.debian.org/debian buster/main armhf libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 83 http://deb.debian.org/debian buster/main armhf libxml-libxml-perl armhf 2.0134+dfsg-1 [326 kB] Get: 84 http://deb.debian.org/debian buster/main armhf texinfo armhf 6.5.0.dfsg.1-4+b1 [1421 kB] Get: 85 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Fetched 55.5 MB in 22s (2511 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../07-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../08-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../09-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:armhf. Preparing to unpack .../10-libprocps7_2%3a3.3.15-2_armhf.deb ... Unpacking libprocps7:armhf (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../11-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../12-procps_2%3a3.3.15-2_armhf.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../13-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../14-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../15-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../16-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../17-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../18-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../19-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../20-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../21-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../22-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../23-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../24-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libarchive13:armhf. Preparing to unpack .../26-libarchive13_3.3.3-4+deb10u1_armhf.deb ... Unpacking libarchive13:armhf (3.3.3-4+deb10u1) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../27-libkeyutils1_1.6-6_armhf.deb ... Unpacking libkeyutils1:armhf (1.6-6) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../28-libkrb5support0_1.17-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.17-3) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../29-libk5crypto3_1.17-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.17-3) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../30-libssl1.1_1.1.1d-0+deb10u3_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-0+deb10u3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../31-libkrb5-3_1.17-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../32-libgssapi-krb5-2_1.17-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../33-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../34-libsasl2-2_2.1.27+dfsg-1+deb10u1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../35-libldap-common_2.4.47+dfsg-3+deb10u2_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../36-libldap-2.4-2_2.4.47+dfsg-3+deb10u2_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../37-libnghttp2-14_1.36.0-2+deb10u1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../38-libpsl5_0.20.2-2_armhf.deb ... Unpacking libpsl5:armhf (0.20.2-2) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../40-libssh2-1_1.8.0-2.1_armhf.deb ... Unpacking libssh2-1:armhf (1.8.0-2.1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../41-libcurl4_7.64.0-4+deb10u1_armhf.deb ... Unpacking libcurl4:armhf (7.64.0-4+deb10u1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../42-libexpat1_2.2.6-2+deb10u1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-2+deb10u1) ... Selecting previously unselected package libjsoncpp1:armhf. Preparing to unpack .../43-libjsoncpp1_1.7.4-3_armhf.deb ... Unpacking libjsoncpp1:armhf (1.7.4-3) ... Selecting previously unselected package librhash0:armhf. Preparing to unpack .../44-librhash0_1.3.8-1_armhf.deb ... Unpacking librhash0:armhf (1.3.8-1) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../45-libuv1_1.24.1-1_armhf.deb ... Unpacking libuv1:armhf (1.24.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../46-cmake_3.13.4-1_armhf.deb ... Unpacking cmake (3.13.4-1) ... Selecting previously unselected package libtool. Preparing to unpack .../47-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../48-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../49-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../50-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../51-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../52-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../53-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../54-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../55-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../56-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../57-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../58-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../59-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../60-icu-devtools_63.1-6+deb10u1_armhf.deb ... Unpacking icu-devtools (63.1-6+deb10u1) ... Selecting previously unselected package libboost1.67-dev:armhf. Preparing to unpack .../61-libboost1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-regex1.67.0:armhf. Preparing to unpack .../62-libboost-regex1.67.0_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-regex1.67.0:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libicu-dev:armhf. Preparing to unpack .../63-libicu-dev_63.1-6+deb10u1_armhf.deb ... Unpacking libicu-dev:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libboost-regex1.67-dev:armhf. Preparing to unpack .../64-libboost-regex1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-regex1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-iostreams1.67-dev:armhf. Preparing to unpack .../65-libboost-iostreams1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-iostreams1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-iostreams-dev:armhf. Preparing to unpack .../66-libboost-iostreams-dev_1.67.0.1_armhf.deb ... Unpacking libboost-iostreams-dev:armhf (1.67.0.1) ... Selecting previously unselected package libbpp-core4:armhf. Preparing to unpack .../67-libbpp-core4_2.4.1-3_armhf.deb ... Unpacking libbpp-core4:armhf (2.4.1-3) ... Selecting previously unselected package libbpp-core-dev. Preparing to unpack .../68-libbpp-core-dev_2.4.1-3_armhf.deb ... Unpacking libbpp-core-dev (2.4.1-3) ... Selecting previously unselected package libbpp-seq12:armhf. Preparing to unpack .../69-libbpp-seq12_2.4.1-3_armhf.deb ... Unpacking libbpp-seq12:armhf (2.4.1-3) ... Selecting previously unselected package libbpp-phyl12:armhf. Preparing to unpack .../70-libbpp-phyl12_2.4.1-2_armhf.deb ... Unpacking libbpp-phyl12:armhf (2.4.1-2) ... Selecting previously unselected package libbpp-seq-dev. Preparing to unpack .../71-libbpp-seq-dev_2.4.1-3_armhf.deb ... Unpacking libbpp-seq-dev (2.4.1-3) ... Selecting previously unselected package libbpp-phyl-dev:armhf. Preparing to unpack .../72-libbpp-phyl-dev_2.4.1-2_armhf.deb ... Unpacking libbpp-phyl-dev:armhf (2.4.1-2) ... Selecting previously unselected package libbpp-seq-omics3:armhf. Preparing to unpack .../73-libbpp-seq-omics3_2.4.1-3_armhf.deb ... Unpacking libbpp-seq-omics3:armhf (2.4.1-3) ... Selecting previously unselected package libbpp-phyl-omics3:armhf. Preparing to unpack .../74-libbpp-phyl-omics3_2.4.1-1_armhf.deb ... Unpacking libbpp-phyl-omics3:armhf (2.4.1-1) ... Selecting previously unselected package libbpp-seq-omics-dev. Preparing to unpack .../75-libbpp-seq-omics-dev_2.4.1-3_armhf.deb ... Unpacking libbpp-seq-omics-dev (2.4.1-3) ... Selecting previously unselected package libbpp-phyl-omics-dev. Preparing to unpack .../76-libbpp-phyl-omics-dev_2.4.1-1_armhf.deb ... Unpacking libbpp-phyl-omics-dev (2.4.1-1) ... Selecting previously unselected package libbz2-dev:armhf. Preparing to unpack .../77-libbz2-dev_1.0.6-9.2~deb10u1_armhf.deb ... Unpacking libbz2-dev:armhf (1.0.6-9.2~deb10u1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../78-libtext-unidecode-perl_1.30-1_all.deb ... Unpacking libtext-unidecode-perl (1.30-1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../79-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../80-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../81-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../82-libxml-libxml-perl_2.0134+dfsg-1_armhf.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package texinfo. Preparing to unpack .../83-texinfo_6.5.0.dfsg.1-4+b1_armhf.deb ... Unpacking texinfo (6.5.0.dfsg.1-4+b1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../84-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up libboost1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up libexpat1:armhf (2.2.6-2+deb10u1) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up lsb-base (10.2019051400) ... Setting up libkeyutils1:armhf (1.6-6) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ... Setting up libprocps7:armhf (2:3.3.15-2) ... Setting up libnghttp2-14:armhf (1.36.0-2+deb10u1) ... Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up libkrb5support0:armhf (1.17-3) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:armhf (1.24.1-1) ... Setting up libbpp-core4:armhf (2.4.1-3) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up libk5crypto3:armhf (1.17-3) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:armhf (1.3.8-1) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:armhf (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:armhf (1.17-3) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libbpp-seq12:armhf (2.4.1-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libicu-dev:armhf (63.1-6+deb10u1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up libbz2-dev:armhf (1.0.6-9.2~deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libbpp-phyl12:armhf (2.4.1-2) ... Setting up libboost-regex1.67.0:armhf (1.67.0-13+deb10u1) ... Setting up libbpp-seq-omics3:armhf (2.4.1-3) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:armhf (3.3.3-4+deb10u1) ... Setting up libboost-regex1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up libldap-2.4-2:armhf (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libbpp-core-dev (2.4.1-3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-3) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libbpp-phyl-omics3:armhf (2.4.1-1) ... Setting up libcurl4:armhf (7.64.0-4+deb10u1) ... Setting up libboost-iostreams1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-3) ... Setting up gettext (0.19.8.1-9) ... Setting up libboost-iostreams-dev:armhf (1.67.0.1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libbpp-phyl-dev:armhf (2.4.1-2) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libbpp-seq-omics-dev (2.4.1-3) ... Setting up cmake (3.13.4-1) ... Setting up libbpp-phyl-omics-dev (2.4.1-1) ... Setting up po-debconf (1.0.21) ... Setting up texinfo (6.5.0.dfsg.1-4+b1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/maffilter-1.3.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package maffilter dpkg-buildpackage: info: source version 1.3.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Julien Dutheil dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/maffilter-1.3.1+dfsg' dh_auto_configure -- -DCMAKE_BUILD_TYPE=RelWithDebInfo cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=RelWithDebInfo .. -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-phyl-omics 3.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 -- includes: /usr/include -- Boost version: 1.67.0 -- Found the following Boost libraries: -- iostreams -- regex -- Boost libraries found here: includes: /usr/include dynamic libraries: /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so;/usr/lib/arm-linux-gnueabihf/libboost_regex.so -- Library z found here: includes: /usr/include dynamic libraries: /usr/lib/arm-linux-gnueabihf/libz.so -- Library bz2 found here: includes: /usr/include dynamic libraries: /usr/lib/arm-linux-gnueabihf/libbz2.so -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/maffilter-1.3.1+dfsg' dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 make[1]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/maffilter-1.3.1+dfsg -B/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/maffilter-1.3.1+dfsg /build/maffilter-1.3.1+dfsg/MafFilter /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/maffilter-1.3.1+dfsg /build/maffilter-1.3.1+dfsg/doc /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/maffilter-1.3.1+dfsg /build/maffilter-1.3.1+dfsg/man /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/man /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color= Scanning dependencies of target man make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build Scanning dependencies of target info make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' [ 12%] Compressing manpage maffilter.1 cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /build/maffilter-1.3.1+dfsg/man/maffilter.1 > /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/man/maffilter.1.gz [ 25%] Generating info page cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc && /usr/bin/makeinfo --no-split -o /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc/maffilter.info /build/maffilter-1.3.1+dfsg/doc/maffilter.texi Scanning dependencies of target maffilter make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' [ 37%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/MafFilter.cpp.o cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/MafFilter.cpp.o -c /build/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp [ 37%] Built target man [ 50%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o -c /build/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.cpp [ 62%] Compressing info page cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc && /bin/gzip -c -n -9 /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc/maffilter.info > /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc/maffilter.info.gz make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' [ 62%] Built target info [ 75%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o -c /build/maffilter-1.3.1+dfsg/MafFilter/SystemCallMafIterator.cpp [ 87%] Building CXX object MafFilter/CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -c /build/maffilter-1.3.1+dfsg/MafFilter/TreeBuildingSystemCallMafIterator.cpp In file included from /usr/include/c++/8/algorithm:62, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:47, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /build/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.h:43, from /build/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp:47: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:47, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /build/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.h:43, from /build/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp:47: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/Bpp/Seq/Feature/SequenceFeature.h:47, from /usr/include/Bpp/Seq/Io/Maf/MafSequence.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafBlock.h:43, from /usr/include/Bpp/Seq/Io/Maf/MafIterator.h:43, from /build/maffilter-1.3.1+dfsg/MafFilter/OutputAsFeaturesMafIterator.h:43, from /build/maffilter-1.3.1+dfsg/MafFilter/MafFilter.cpp:47: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In constructor 'bpp::SiteFrequencySpectrumMafStatistics::SiteFrequencySpectrumMafStatistics(const bpp::Alphabet*, const std::vector >&, const std::vector >&, std::__cxx11::string)': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable maffilter cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter && /usr/bin/cmake -E cmake_link_script CMakeFiles/maffilter.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -O2 -g -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/maffilter.dir/MafFilter.cpp.o CMakeFiles/maffilter.dir/OutputAsFeaturesMafIterator.cpp.o CMakeFiles/maffilter.dir/SystemCallMafIterator.cpp.o CMakeFiles/maffilter.dir/TreeBuildingSystemCallMafIterator.cpp.o -o maffilter /usr/lib/arm-linux-gnueabihf/libbpp-phyl-omics.so.3.0.0 -lboost_iostreams -lboost_regex -lz -lbz2 /usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' [100%] Built target maffilter make[2]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/maffilter-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/maffilter-1.3.1+dfsg -B/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/depend make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/maffilter-1.3.1+dfsg /build/maffilter-1.3.1+dfsg/doc /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/maffilter-1.3.1+dfsg /build/maffilter-1.3.1+dfsg/man /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/man /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' cd /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/maffilter-1.3.1+dfsg /build/maffilter-1.3.1+dfsg/MafFilter /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/MafFilter/CMakeFiles/maffilter.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make -f MafFilter/CMakeFiles/maffilter.dir/build.make MafFilter/CMakeFiles/maffilter.dir/build make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'doc/CMakeFiles/info.dir/build'. make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'man/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'MafFilter/CMakeFiles/maffilter.dir/build'. make[3]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' [ 75%] Built target man [ 75%] Built target info [100%] Built target maffilter make[2]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /build/maffilter-1.3.1+dfsg/debian/tmp/usr/bin/maffilter -- Installing: /build/maffilter-1.3.1+dfsg/debian/tmp/usr/share/info/maffilter.info.gz -- Installing: /build/maffilter-1.3.1+dfsg/debian/tmp/usr/share/man/man1/maffilter.1.gz make[1]: Leaving directory '/build/maffilter-1.3.1+dfsg/obj-arm-linux-gnueabihf' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/maffilter-1.3.1+dfsg' dh_fixperms find debian/*/usr/share -name "*.bpp" -executable -exec chmod -x \{\} \; make[1]: Leaving directory '/build/maffilter-1.3.1+dfsg' dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/maffilter/usr/bin/maffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libboost_regex.so.1.67.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/maffilter/usr/bin/maffilter was not linked against libbz2.so.1.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'maffilter-dbgsym' in '../maffilter-dbgsym_1.3.1+dfsg-1_armhf.deb'. dpkg-deb: building package 'maffilter-examples' in '../maffilter-examples_1.3.1+dfsg-1_all.deb'. dpkg-deb: building package 'maffilter' in '../maffilter_1.3.1+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../maffilter_1.3.1+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5048 and its subdirectories I: Current time: Tue Jun 16 23:21:14 -12 2020 I: pbuilder-time-stamp: 1592392874 Wed Jun 17 11:25:43 UTC 2020 I: 1st build successful. Starting 2nd build on remote node bbx15-armhf-rb.debian.net. Wed Jun 17 11:25:43 UTC 2020 I: Preparing to do remote build '2' on bbx15-armhf-rb.debian.net. Wed Jun 17 11:45:15 UTC 2020 I: Deleting $TMPDIR on bbx15-armhf-rb.debian.net. Wed Jun 17 11:45:17 UTC 2020 I: maffilter_1.3.1+dfsg-1_armhf.changes: Format: 1.8 Date: Wed, 22 Aug 2018 11:39:47 +0200 Source: maffilter Binary: maffilter maffilter-dbgsym maffilter-examples Architecture: armhf all Version: 1.3.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Julien Dutheil Description: maffilter - process genome alignment in the Multiple Alignment Format maffilter-examples - process genome alignment in the Multiple Alignment Format (exampl Changes: maffilter (1.3.1+dfsg-1) unstable; urgency=medium . [ Julien Dutheil ] * New upstream version. . [ Andreas Tille ] * Standards-Version: 4.2.0 Checksums-Sha1: 50c3877d4447a3a3f40d621a000ba0886381dc7e 3130268 maffilter-dbgsym_1.3.1+dfsg-1_armhf.deb 3d4cad3c8f680caaa43ed87c8bf24b097dfa31f2 79209880 maffilter-examples_1.3.1+dfsg-1_all.deb 143fcb4cf97b5f037ec81cf7e7834ae498cb2254 6821 maffilter_1.3.1+dfsg-1_armhf.buildinfo 07badbd774570fee369e2a1e636905fc718bde9f 183360 maffilter_1.3.1+dfsg-1_armhf.deb Checksums-Sha256: 2465220a399be52a5f6b4407fcdc8cb126321c2b0a7ddb74847ecc5b8c6f7061 3130268 maffilter-dbgsym_1.3.1+dfsg-1_armhf.deb 394f5de46edd1c7241187267c074c93ff2dbd9e967b89f63054104ae7f8f0df1 79209880 maffilter-examples_1.3.1+dfsg-1_all.deb d03d646fd9657961351e0b5bbff59b31139f18d8ba0cc1fc6df5eb962f64a764 6821 maffilter_1.3.1+dfsg-1_armhf.buildinfo 6c1e518083b15b7cf728fbc5635154b6f90ef45ac274f6218e7a81cbd39b333d 183360 maffilter_1.3.1+dfsg-1_armhf.deb Files: cf9057c0c490bba02c52c95fbcf08c63 3130268 debug optional maffilter-dbgsym_1.3.1+dfsg-1_armhf.deb 82b2f664870cb335ec8949611352e83f 79209880 science optional maffilter-examples_1.3.1+dfsg-1_all.deb 6b6df9d4064ac5cdb6cba41605681c9c 6821 science optional maffilter_1.3.1+dfsg-1_armhf.buildinfo 25be16ab10c259236bc47694f2f3fd8a 183360 science optional maffilter_1.3.1+dfsg-1_armhf.deb Wed Jun 17 11:45:19 UTC 2020 I: diffoscope 147 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.VdQnQFLRe8/maffilter_1.3.1+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.VdQnQFLRe8/maffilter_1.3.1+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.VdQnQFLRe8/maffilter_1.3.1+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.VdQnQFLRe8/b1/maffilter_1.3.1+dfsg-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.VdQnQFLRe8/b2/maffilter_1.3.1+dfsg-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.202s) 1.202s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.976s) 0.976s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jun 17 11:45:22 UTC 2020 I: diffoscope 147 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 17 11:45:22 UTC 2020 I: maffilter from buster built successfully and reproducibly on armhf. Wed Jun 17 11:45:23 UTC 2020 I: Submitting .buildinfo files to external archives: Wed Jun 17 11:45:23 UTC 2020 I: Submitting 8.0K b1/maffilter_1.3.1+dfsg-1_armhf.buildinfo.asc Wed Jun 17 11:45:24 UTC 2020 I: Submitting 8.0K b2/maffilter_1.3.1+dfsg-1_armhf.buildinfo.asc Wed Jun 17 11:45:25 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 17 11:45:25 UTC 2020 I: Done submitting .buildinfo files. Wed Jun 17 11:45:25 UTC 2020 I: Removing signed maffilter_1.3.1+dfsg-1_armhf.buildinfo.asc files: removed './b1/maffilter_1.3.1+dfsg-1_armhf.buildinfo.asc' removed './b2/maffilter_1.3.1+dfsg-1_armhf.buildinfo.asc'