Fri Oct 2 12:28:52 UTC 2020 I: starting to build libgenome/buster/armhf on jenkins on '2020-10-02 12:28' Fri Oct 2 12:28:52 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_38/1860/console.log Fri Oct 2 12:28:52 UTC 2020 I: Downloading source for buster/libgenome=1.3.11+svn20110227.4616-2 --2020-10-02 12:28:53-- http://deb.debian.org/debian/pool/main/libg/libgenome/libgenome_1.3.11+svn20110227.4616-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2132 (2.1K) Saving to: ‘libgenome_1.3.11+svn20110227.4616-2.dsc’ 0K .. 100% 6.34M=0s 2020-10-02 12:28:53 (6.34 MB/s) - ‘libgenome_1.3.11+svn20110227.4616-2.dsc’ saved [2132/2132] Fri Oct 2 12:28:53 UTC 2020 I: libgenome_1.3.11+svn20110227.4616-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgenome Binary: libgenome-dev, libgenome0 Architecture: any Version: 1.3.11+svn20110227.4616-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://sourceforge.net/projects/libgenome/ Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/libgenome Vcs-Git: https://salsa.debian.org/med-team/libgenome.git Build-Depends: debhelper (>= 11~), d-shlibs (>= 0.61) Package-List: libgenome-dev deb libdevel optional arch=any libgenome0 deb libs optional arch=any Checksums-Sha1: ff883500ecf525a078e542ba2eacf7918f7a02f8 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 9799512d370bcd335d29558f685f557abe364775 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz Checksums-Sha256: a2ca77c2a4e9c6239d9cc2fd84b84ffa75444283e3c3d34f8e724525b6a1b677 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 1b2b9cd052802604449bc5898caf90d3bb0606ef837d0385b2cfe4f21f9ba94d 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz Files: 505900cdacc864d2a52847ff47b8ae37 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz c6ae492c8d7d746704765c1dee7a4a61 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAltxoBUACgkQr8/sjmac 4cJ30Q//bMzzTOci4UuK+Pf7ta/C7USR25nsdx0dJcSMA/lZa3ykYspNHsVEaQ1Q 9fJzohWsAAgvNShgVbnZ/2/D0qJpeJsPK8EbtrKC89HD9aBu/c5Z4pHmN66XXd1O 6SdDHA0PHDMLiww1TlEoN6FMb7xLVMDKYsj0spj2HmCnPSYjpcVz0YRvY7QvJ7Jp zhn6OAj2obvaDe9TyyC+fz+c5xQNdIgjaDc576tSkzjo/wNudZ7MMlml43sZ2KBg /VWVbzJs2KtB7qLQEDsEqOFvRbb2k6M8IHfVK8YtLxbAuAtE+Dg3z53s5np1SzhI kEOYQi9iUS8GD4ZUxx8XgooEcASzoaNI5I8ighHnaU1w+STMEDXoTIwOuz4gJCEM F7qBn/yF1dUfcqTJnJyxXtXwn+5lqNRCnR3bmsRADkTyItTphAvNi3cRxIsu2Y48 G+gNtgr/4vJSA21m5hIc8UhHnJgXZWsa7Cg8qUjOCl46EUtmL0jEobjX0tZqg8RK cjyYZdK94mKf9MLOXL+TdZfSTpu+/bwwYN1B2FkGX7CqGHXbuI/wZAHmiQWTQChf r9KrV50/mncWi1T1SkPNkXlbOQxl9XGDnQ4etQw2HNT+FnqNh5xqqM0A5bQqeG+Q laQmtvWgxtsUmRoXlxvDwFWADpGh7cFlB4sw5Ii650yEKjVavH4= =HdlD -----END PGP SIGNATURE----- Fri Oct 2 12:28:53 UTC 2020 I: Checking whether the package is not for us Fri Oct 2 12:28:53 UTC 2020 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Fri Oct 2 12:28:53 UTC 2020 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Fri Oct 2 12:35:01 UTC 2020 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 2 00:29:01 -12 2020 I: pbuilder-time-stamp: 1601641741 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgenome_1.3.11+svn20110227.4616-2.dsc] I: copying [./libgenome_1.3.11+svn20110227.4616.orig.tar.xz] I: copying [./libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 13 03:13:25 2018 -12 gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgenome_1.3.11+svn20110227.4616-2.dsc dpkg-source: info: extracting libgenome in libgenome-1.3.11+svn20110227.4616 dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/408/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='6de00bb0ae3f40919b12a961525a9e61' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='408' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.viQeEktHsU/pbuilderrc_eo3A --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.viQeEktHsU/b1 --logfile b1/build.log libgenome_1.3.11+svn20110227.4616-2.dsc' SUDO_GID='115' SUDO_UID='111' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux wbq0 4.19.0-11-armmp #1 SMP Debian 4.19.146-1 (2020-09-17) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 20 20:26 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/408/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), d-shlibs (>= 0.61) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.61); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf d-shlibs all 0.84 [17.2 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 25 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 31 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 32 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Fetched 18.2 MB in 2s (9614 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking target system type... arm-unknown-linux-gnueabihf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for ANSI C header files... (cached) yes checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking whether time.h and sys/time.h may both be included... yes checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j3 make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFilter.lo gnFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnCompare.lo gnCompare.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnTranslator.lo gnTranslator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSourceFactory.lo gnSourceFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceFactory.cpp -o gnSourceFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFeature.lo gnFeature.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSourceQualifier.lo gnSourceQualifier.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceQualifier.cpp -fPIC -DPIC -o .libs/gnSourceQualifier.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceQualifier.cpp -o gnSourceQualifier.o >/dev/null 2>&1 In file included from /usr/include/c++/8/vector:69, from ../libGenome/gnFeature.h:22, from gnFeature.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const genome::gnLocation&}; _Tp = genome::gnLocation; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../libGenome/gnFeature.h:22, from gnFeature.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In copy constructor 'genome::gnFeature::gnFeature(const genome::gnFeature&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFeature.cpp -o gnFeature.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFileContig.lo gnFileContig.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFileContig.cpp -fPIC -DPIC -o .libs/gnFileContig.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFileContig.cpp -o gnFileContig.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. 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gnBaseFeature.cpp: In member function 'virtual boolean genome::gnBaseFeature::AddLocation(const genome::gnLocation&, uint32)': gnBaseFeature.cpp:197:58: note: parameter passing for argument of type 'std::vector::const_iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 m_locationList.insert(m_locationList.begin() + listI, l); ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnBaseFeature.cpp -o gnBaseFeature.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSequence.lo gnSequence.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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gnPosSpecificTranslator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnPosSpecificTranslator.cpp -fPIC -DPIC -o .libs/gnPosSpecificTranslator.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnDefs.lo gnDefs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnDefs.cpp -fPIC -DPIC -o .libs/gnDefs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnDefs.cpp -o gnDefs.o >/dev/null 2>&1 In file included from /usr/include/c++/8/vector:69, from ../libGenome/gnFastTranslator.h:23, from gnFastTranslator.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnPosSpecificTranslator.cpp -o gnPosSpecificTranslator.o >/dev/null 2>&1 /usr/include/c++/8/bits/vector.tcc: In member function 'virtual void genome::gnFastTranslator::CacheTranslator(const genome::gnTranslator*, std::__cxx11::string, gnSeqI)': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFastTranslator.cpp -o gnFastTranslator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:3:1 -Wl,-z,relro -Wl,-z,now -o libGenome.la -rpath /usr/lib/arm-linux-gnueabihf gnFilter.lo gnCompare.lo gnTranslator.lo gnSourceFactory.lo gnFeature.lo gnSourceQualifier.lo gnFileContig.lo gnSourceSpec.lo gnFileSource.lo gnFASSource.lo gnFragmentSpec.lo gnStringSpec.lo gnGBKSource.lo gnStringTools.lo gnGenomeSpec.lo gnLocation.lo gnRAWSource.lo gnBaseFeature.lo gnSEQSource.lo gnSequence.lo gnContigSpec.lo gnSourceHeader.lo gnException.lo gnFastTranslator.lo gnPosSpecificTranslator.lo gnDefs.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/8/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/arm-linux-gnueabihf/8 -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/8/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/8/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/8/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGenome.so.0 -o .libs/libGenome.so.0.1.3 libtool: link: (cd ".libs" && rm -f "libGenome.so.0" && ln -s "libGenome.so.0.1.3" "libGenome.so.0") libtool: link: (cd ".libs" && rm -f "libGenome.so" && ln -s "libGenome.so.0.1.3" "libGenome.so") libtool: link: ar cru .libs/libGenome.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libGenome.a libtool: link: ( cd ".libs" && rm -f "libGenome.la" && ln -s "../libGenome.la" "libGenome.la" ) make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' Making install in libGenome make[2]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/mkdir -p '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so.0.1.3 libtool: install: (cd /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a libtool: install: chmod 644 /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a libtool: install: ranlib /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_install make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libgenome0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.a debian/libgenome-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so debian/libgenome-dev/usr/lib/arm-linux-gnueabihf mv /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so.0 debian/libgenome0/usr/lib/arm-linux-gnueabihf mv /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/arm-linux-gnueabihf/libGenome.so.0.1.3 debian/libgenome0/usr/lib/arm-linux-gnueabihf PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/arm-linux-gnueabihf/pkgconfig make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libgenome0/usr/lib/arm-linux-gnueabihf/libGenome.so.0.1.3 found in none of the libraries dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-2_armhf.deb'. dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-2_armhf.deb'. dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libgenome_1.3.11+svn20110227.4616-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/408 and its subdirectories I: Current time: Fri Oct 2 00:34:50 -12 2020 I: pbuilder-time-stamp: 1601642090 Fri Oct 2 12:35:04 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ff2b-armhf-rb.debian.net. Fri Oct 2 12:35:04 UTC 2020 I: Preparing to do remote build '2' on ff2b-armhf-rb.debian.net. Fri Oct 2 12:37:51 UTC 2020 I: Deleting $TMPDIR on ff2b-armhf-rb.debian.net. Fri Oct 2 12:37:54 UTC 2020 I: libgenome_1.3.11+svn20110227.4616-2_armhf.changes: Format: 1.8 Date: Mon, 13 Aug 2018 15:08:30 +0000 Source: libgenome Binary: libgenome-dev libgenome0 libgenome0-dbgsym Architecture: armhf Version: 1.3.11+svn20110227.4616-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Graham Inggs Description: libgenome-dev - toolkit for developing bioinformatic related software (devel) libgenome0 - toolkit for developing bioinformatic related software Closes: 905566 Changes: libgenome (1.3.11+svn20110227.4616-2) unstable; urgency=medium . * Update symbols for GCC 8 and make them amd64-only (Closes: #905566) Checksums-Sha1: 7207cc949f082cbe38d8fe7dcc3100354e55d29a 174776 libgenome-dev_1.3.11+svn20110227.4616-2_armhf.deb f2589c33981fcddb922df1e8ae1b9f20e2343ea3 1885852 libgenome0-dbgsym_1.3.11+svn20110227.4616-2_armhf.deb cb94b5a1126eae476e2f2213d02a409a7281391e 98396 libgenome0_1.3.11+svn20110227.4616-2_armhf.deb bf0b376af8d44643db41bad123e0cc47a3eba524 5446 libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo Checksums-Sha256: a517ed2e313c895c3865b1429ac34378e4d8f8b797d979880ccdbc1579ad82fc 174776 libgenome-dev_1.3.11+svn20110227.4616-2_armhf.deb db3a73ce46abf72303a9405ec5ef875283ad3610d7bc394393b0684013fcecb2 1885852 libgenome0-dbgsym_1.3.11+svn20110227.4616-2_armhf.deb bd4405bc588f8c5f20384bf32caf48ef49bc286098efc54215bd22659ff345e6 98396 libgenome0_1.3.11+svn20110227.4616-2_armhf.deb 9963006acf5619160665174f236537aaec8b7a46a59d428500bb201c7dfcdd16 5446 libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo Files: a876a50fb7a355c5c3016835d2810e44 174776 libdevel optional libgenome-dev_1.3.11+svn20110227.4616-2_armhf.deb c357acbb69897ff46e0654d93da94860 1885852 debug optional libgenome0-dbgsym_1.3.11+svn20110227.4616-2_armhf.deb 8baead69fa07a5f0a01e9326e476fb32 98396 libs optional libgenome0_1.3.11+svn20110227.4616-2_armhf.deb 6544e9ed78471a0b5c0b76f67c265a39 5446 science optional libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo Fri Oct 2 12:37:55 UTC 2020 I: diffoscope 160 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.viQeEktHsU/libgenome_1.3.11+svn20110227.4616-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.viQeEktHsU/libgenome_1.3.11+svn20110227.4616-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.viQeEktHsU/libgenome_1.3.11+svn20110227.4616-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.viQeEktHsU/b1/libgenome_1.3.11+svn20110227.4616-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.viQeEktHsU/b2/libgenome_1.3.11+svn20110227.4616-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.217s) 0.217s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.042s) 0.042s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Oct 2 12:37:56 UTC 2020 I: diffoscope 160 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 2 12:37:56 UTC 2020 I: libgenome from buster built successfully and reproducibly on armhf. Fri Oct 2 12:37:58 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Oct 2 12:37:58 UTC 2020 I: Submitting 8.0K b1/libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo.asc Fri Oct 2 12:37:59 UTC 2020 I: Submitting 8.0K b2/libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo.asc Fri Oct 2 12:38:01 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 2 12:38:01 UTC 2020 I: Done submitting .buildinfo files. Fri Oct 2 12:38:01 UTC 2020 I: Removing signed libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo.asc files: removed './b1/libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo.asc' removed './b2/libgenome_1.3.11+svn20110227.4616-2_armhf.buildinfo.asc'