Thu May 21 00:14:29 UTC 2020 I: starting to build libccp4/buster/armhf on jenkins on '2020-05-21 00:14' Thu May 21 00:14:29 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_27/1412/console.log Thu May 21 00:14:29 UTC 2020 I: Downloading source for buster/libccp4=6.5.1-1 --2020-05-21 00:14:29-- http://deb.debian.org/debian/pool/main/libc/libccp4/libccp4_6.5.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2288 (2.2K) Saving to: ‘libccp4_6.5.1-1.dsc’ 0K .. 100% 260M=0s 2020-05-21 00:14:29 (260 MB/s) - ‘libccp4_6.5.1-1.dsc’ saved [2288/2288] Thu May 21 00:14:29 UTC 2020 I: libccp4_6.5.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libccp4 Binary: libccp4c0, libccp4-dev, libccp4f0, libccp4-data Architecture: any all Version: 6.5.1-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Andrius Merkys Homepage: http://www.ccp4.ac.uk/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/science-team/libccp4 Vcs-Git: https://salsa.debian.org/science-team/libccp4.git Build-Depends: debhelper (>= 11), gfortran, libmmdb2-dev, m4 Package-List: libccp4-data deb libdevel optional arch=all libccp4-dev deb libdevel optional arch=any libccp4c0 deb libs optional arch=any libccp4f0 deb libs optional arch=any Checksums-Sha1: 7368188b5eab23d6fc28821d851e217b544492db 947521 libccp4_6.5.1.orig.tar.gz 37de1d948132306bce00800957f61f243a4b6e4c 3880 libccp4_6.5.1-1.debian.tar.xz Checksums-Sha256: 280b473d950cdf8837ef66147ec581104298b892399bd856f13b096f2395dbe5 947521 libccp4_6.5.1.orig.tar.gz d97f63243d2913ead58ef155e9ea0400b45ee18bdc6663d1e885c5c499de77a9 3880 libccp4_6.5.1-1.debian.tar.xz Files: ac145e52039546c1751b69db9b216c33 947521 libccp4_6.5.1.orig.tar.gz 5e775c2f5d5334e85b54393c1feba409 3880 libccp4_6.5.1-1.debian.tar.xz Dgit: 205f1a2a83127f745a63eb660067f572b5b916c2 debian archive/debian/6.5.1-1 https://git.dgit.debian.org/libccp4 -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE2bRTt5m4gw2UXmoKW/VOXhK5ALsFAlruxDARHHBpY2NhQGRl Ymlhbi5vcmcACgkQW/VOXhK5ALsX1A//a6FxXZPtQg2fqMS1FpF3jE2wORnSjL+C zaPpadtNQ9C+Z74L+K4naNPQSGjEeo/0HUZWARLs3ACARstR9CsX9QIgz/hz3fJR VcmfdjYC+y6EO5vIHDO/tSg44LukD6POZRKSb3H+Md3ICCyk11wjdNBP0RnkkT5i 3CLLHoKcCNT8QRN8Glb1bwYUszYn+KpNZgUSUeiHwdkK5r14Odmd0PvJnRjwpM4a +bGu3+6bbvNeZEQywjO7g6tMhlxPowuYrhMVPbL59GT8DYy++idAs0hoIBJmZUAs 3E6BJN2LKyV7DJQwRF57aG8Pu5AG++IqHeWHziReKKgGW/VidvJKF9Kuzb0cqgto DJb+okxBCZdVf71tNeAC9SKi1Z+xkGjKpYu5TDN7Yz/5pY70c7OpLqeagtAGBJQx vSl+LZYykYMYkbf8LCiwVGnUSsK/KiP7skmBzE9QUaMPpI4HfnyzS6vwpRm3pbw5 /zQmmsXj09D8URA4XNn04ZKBZaN/XTHYZJtKdFuWtkyLPbCFERMGrjno3h56N9Ew AkOEAJXc0wZjdI0sp+iMuQm4We8lsCaOICbxs+A/eXaW9r6bpiHOgWzDHvaklLjg qpfmFgePHnhJg02N8WyHoBG0ZPCr2C0QlkI7KoSsasZCbFPRYEzBqRhalHjKP5FG fpwlQGQJQfk= =QSSo -----END PGP SIGNATURE----- Thu May 21 00:14:29 UTC 2020 I: Checking whether the package is not for us Thu May 21 00:14:29 UTC 2020 I: Starting 1st build on remote node odu3a-armhf-rb.debian.net. Thu May 21 00:14:29 UTC 2020 I: Preparing to do remote build '1' on odu3a-armhf-rb.debian.net. Thu May 21 00:18:18 UTC 2020 I: Deleting $TMPDIR on odu3a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 20 12:14:40 -12 2020 I: pbuilder-time-stamp: 1590020080 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libccp4_6.5.1-1.dsc] I: copying [./libccp4_6.5.1.orig.tar.gz] I: copying [./libccp4_6.5.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat May 5 21:00:32 2018 -12 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libccp4_6.5.1-1.dsc dpkg-source: info: extracting libccp4 in libccp4-6.5.1 dpkg-source: info: unpacking libccp4_6.5.1.orig.tar.gz dpkg-source: info: unpacking libccp4_6.5.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-use-mmdb2-instead-of-mmdb-in-libccp4f.pc.in.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), gfortran, libmmdb2-dev, m4 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on m4; however: Package m4 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 26.3 MB of archives. After unpacking 82.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libgfortran-8-dev armhf 8.3.0-6 [260 kB] Get: 36 http://deb.debian.org/debian buster/main armhf gfortran-8 armhf 8.3.0-6 [7219 kB] Get: 37 http://deb.debian.org/debian buster/main armhf gfortran armhf 4:8.3.0-1 [1424 B] Get: 38 http://deb.debian.org/debian buster/main armhf libmmdb2-0 armhf 2.0.5-1 [272 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB] Fetched 26.3 MB in 4s (6236 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../33-libgfortran5_8.3.0-6_armhf.deb ... Unpacking libgfortran5:armhf (8.3.0-6) ... Selecting previously unselected package libgfortran-8-dev:armhf. Preparing to unpack .../34-libgfortran-8-dev_8.3.0-6_armhf.deb ... Unpacking libgfortran-8-dev:armhf (8.3.0-6) ... Selecting previously unselected package gfortran-8. Preparing to unpack .../35-gfortran-8_8.3.0-6_armhf.deb ... Unpacking gfortran-8 (8.3.0-6) ... Selecting previously unselected package gfortran. Preparing to unpack .../36-gfortran_4%3a8.3.0-1_armhf.deb ... Unpacking gfortran (4:8.3.0-1) ... Selecting previously unselected package libmmdb2-0:armhf. Preparing to unpack .../37-libmmdb2-0_2.0.5-1_armhf.deb ... Unpacking libmmdb2-0:armhf (2.0.5-1) ... Selecting previously unselected package libmmdb2-dev. Preparing to unpack .../38-libmmdb2-dev_2.0.5-1_armhf.deb ... Unpacking libmmdb2-dev (2.0.5-1) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up libmmdb2-0:armhf (2.0.5-1) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libmmdb2-dev (2.0.5-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libgfortran5:armhf (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgfortran-8-dev:armhf (8.3.0-6) ... Setting up libtool (2.4.6-9) ... Setting up gfortran-8 (8.3.0-6) ... Setting up m4 (1.4.18-2) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libccp4-6.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libccp4 dpkg-buildpackage: info: source version 6.5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libccp4-6.5.1' dh_auto_configure -- --disable-static --enable-shared --datadir=/usr/share/ccp4 ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-static --enable-shared --datadir=/usr/share/ccp4 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for m4... /usr/bin/m4 configure: fortran/unix.m4 will be processed with m4 -D_gfort=1 checking for library containing cos... -lm checking for MMDB_CCIF_Init in -lmmdb2... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libccp4c.pc config.status: creating libccp4f.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_build make -j3 make[1]: Entering directory '/build/libccp4-6.5.1' m4 -D_gfort=1 fortran/unix.m4 > fortran/unix.f make all-am make[2]: Entering directory '/build/libccp4-6.5.1' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_array.lo ccp4/ccp4_array.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_data.lo ccp4/cmap_data.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmtzlib.lo ccp4/cmtzlib.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_array.c -fPIC -DPIC -o ccp4/.libs/ccp4_array.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmtzlib.c -fPIC -DPIC -o ccp4/.libs/cmtzlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_data.c -fPIC -DPIC -o ccp4/.libs/cmap_data.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_general.lo ccp4/ccp4_general.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_general.c -fPIC -DPIC -o ccp4/.libs/ccp4_general.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_header.lo ccp4/cmap_header.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_header.c -fPIC -DPIC -o ccp4/.libs/cmap_header.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/csymlib.lo ccp4/csymlib.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/csymlib.c -fPIC -DPIC -o ccp4/.libs/csymlib.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_parser.lo ccp4/ccp4_parser.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_parser.c -fPIC -DPIC -o ccp4/.libs/ccp4_parser.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_labels.lo ccp4/cmap_labels.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_labels.c -fPIC -DPIC -o ccp4/.libs/cmap_labels.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cvecmat.lo ccp4/cvecmat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cvecmat.c -fPIC -DPIC -o ccp4/.libs/cvecmat.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_program.lo ccp4/ccp4_program.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_program.c -fPIC -DPIC -o ccp4/.libs/ccp4_program.o ccp4/ccp4_program.c: In function 'ccp4_vers_no': ccp4/ccp4_program.c:68:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(ccp4version,MAXLEN_PROGVERSION,cfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_open.lo ccp4/cmap_open.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_open.c -fPIC -DPIC -o ccp4/.libs/cmap_open.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_err.lo ccp4/library_err.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_unitcell.lo ccp4/ccp4_unitcell.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_err.c -fPIC -DPIC -o ccp4/.libs/library_err.o ccp4/library_err.c: In function 'CFile_Perror': ccp4/library_err.c:247:26: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (msg == NULL || msg == '\0') colon = ""; ^~ ccp4/library_err.c:247:22: note: did you mean to dereference the pointer? if (msg == NULL || msg == '\0') colon = ""; ^ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_unitcell.c -fPIC -DPIC -o ccp4/.libs/ccp4_unitcell.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_skew.lo ccp4/cmap_skew.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_skew.c -fPIC -DPIC -o ccp4/.libs/cmap_skew.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_file.lo ccp4/library_file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_accessor.lo ccp4/cmap_accessor.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_file.c -fPIC -DPIC -o ccp4/.libs/library_file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_accessor.c -fPIC -DPIC -o ccp4/.libs/cmap_accessor.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_stats.lo ccp4/cmap_stats.c ccp4/cmtzlib.c: In function 'MtzPut': ccp4/cmtzlib.c:2721:27: warning: '%74s' directive writing between 74 and 80 bytes into a region of size 76 [-Wformat-overflow=] sprintf(hdrrec,"SYMM %74s",symline); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from ccp4/cmtzlib.c:23: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 80 and 86 bytes into a destination of size 81 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c:2815:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~ ccp4/cmtzlib.c:2815:20: note: directive argument in the range [0, 2147483647] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ccp4/cmtzlib.c:23: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c:2817:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~ ccp4/cmtzlib.c:2817:20: note: directive argument in the range [0, 2147483647] sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ccp4/cmtzlib.c:23: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_stats.c -fPIC -DPIC -o ccp4/.libs/cmap_stats.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_utils.lo ccp4/library_utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_utils.c -fPIC -DPIC -o ccp4/.libs/library_utils.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_close.lo ccp4/cmap_close.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_close.c -fPIC -DPIC -o ccp4/.libs/cmap_close.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_symop.lo ccp4/cmap_symop.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/pack_c.lo ccp4/pack_c.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_diskio_f.lo `test -f 'fortran/ccp4_diskio_f.c' || echo './'`fortran/ccp4_diskio_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_symop.c -fPIC -DPIC -o ccp4/.libs/cmap_symop.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/pack_c.c -fPIC -DPIC -o ccp4/.libs/pack_c.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_diskio_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_diskio_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_parser_f.lo `test -f 'fortran/ccp4_parser_f.c' || echo './'`fortran/ccp4_parser_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_parser_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_parser_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmaplib_f.lo `test -f 'fortran/cmaplib_f.c' || echo './'`fortran/cmaplib_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmaplib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmaplib_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-csymlib_f.lo `test -f 'fortran/csymlib_f.c' || echo './'`fortran/csymlib_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/csymlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-csymlib_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_general_f.lo `test -f 'fortran/ccp4_general_f.c' || echo './'`fortran/ccp4_general_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_general_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_general_f.o In file included from fortran/ccp4_general_f.c:34: fortran/ccp4_general_f.c: In function 'ccpfyp_': fortran/ccp4_general_f.c:88:23: warning: implicit declaration of function 'outbuf_'; did you mean 'setbuf'? [-Wimplicit-function-declaration] FORTRAN_CALL(OUTBUF,outbuf,(),(),()); ^~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c:114:5: warning: implicit declaration of function '_gfortran_getarg_i4'; did you mean '_gfortran_getarg'? [-Wimplicit-function-declaration] _gfortran_getarg_i4(&i,arg,arg_len); ^~~~~~~~~~~~~~~~~~~ _gfortran_getarg In file included from fortran/ccp4_general_f.c:34: fortran/ccp4_general_f.c:145:29: warning: implicit declaration of function 'ccp4h_init_'; did you mean 'ccp4printf'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_INIT, ccp4h_init, (), (), ()); ^~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c: In function 'ccperr_': fortran/ccp4_general_f.c:218:37: warning: implicit declaration of function 'ccp4_fflush_stdout_'; did you mean 'ccp4_file_status'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4_FFLUSH_STDOUT, ccp4_fflush_stdout, (), (), ()); ^~~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c:222:38: warning: implicit declaration of function 'ccp4h_summary_beg_' [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_SUMMARY_BEG, ccp4h_summary_beg, (), (), ()); ^~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c:230:38: warning: implicit declaration of function 'ccp4h_summary_end_'; did you mean 'ccp4_parse_end'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_SUMMARY_END, ccp4h_summary_end, (), (), ()); ^~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/ccp4_general_f.c: In function 'ccpvrs_': fortran/ccp4_general_f.c:376:32: warning: implicit declaration of function 'ccp4h_pre_beg_'; did you mean 'ccp4_prog_vers'? [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_PRE_BEG, ccp4h_pre_beg, (), (), ()); ^~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_unitcell_f.lo `test -f 'fortran/ccp4_unitcell_f.c' || echo './'`fortran/ccp4_unitcell_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_unitcell_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmtzlib_f.lo `test -f 'fortran/cmtzlib_f.c' || echo './'`fortran/cmtzlib_f.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-library_f.lo `test -f 'fortran/library_f.c' || echo './'`fortran/library_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmtzlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmtzlib_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/library_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-library_f.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/ccplib.lo fortran/ccplib.f In file included from fortran/cmtzlib_f.c:70: fortran/cmtzlib_f.c: In function 'mtzini_': fortran/cmtzlib_f.c:152:33: warning: implicit declaration of function 'ccp4h_init_lib_' [-Wimplicit-function-declaration] FORTRAN_CALL (CCP4H_INIT_LIB, ccp4h_init_lib, (&ihtml,&isumm), (&ihtml,&isumm), (&ihtml,&isumm)); ^~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' name##_ p_sun ^~~~ fortran/cmtzlib_f.c: In function 'lrhist_': fortran/cmtzlib_f.c:277:43: warning: passing argument 2 of 'ccp4_lrhist' from incompatible pointer type [-Wincompatible-pointer-types] *nlines = ccp4_lrhist(mtzdata[*mindx-1], hstrng, *nlines); ^~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:668:38: note: expected 'char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} int ccp4_lrhist(const MTZ *mtz, char history[][MTZRECORDLENGTH], int nlines); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyin_': fortran/cmtzlib_f.c:632:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgi,user_label_in[*mindx-1]) == -1) ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' int MtzParseLabin(char *labin_line, const char prog_labels[][31], ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyout_': fortran/cmtzlib_f.c:686:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgo,user_label_out[*mindx-1]) == -1) ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' int MtzParseLabin(char *labin_line, const char prog_labels[][31], ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyset_': fortran/cmtzlib_f.c:731:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' int MtzParseLabin(char *labin_line, const char prog_labels[][31], ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c:731:45: warning: passing argument 4 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) ^~~~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:739:28: note: expected 'char (*)[2][31]' but argument is of type 'char *' const int nlprgi, char user_labels[][2][31]); ~~~~~^~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrassn_': fortran/cmtzlib_f.c:830:44: warning: passing argument 2 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:754:10: note: expected 'const char (*)[31]' but argument is of type 'char *' MTZCOL **ccp4_lrassn(const MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c:830:58: warning: passing argument 4 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); ^~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:754:10: note: expected 'char (*)[3]' but argument is of type 'char *' MTZCOL **ccp4_lrassn(const MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrreff_': fortran/cmtzlib_f.c:1210:23: warning: passing argument 5 of 'ccp4_lrreff' from incompatible pointer type [-Wincompatible-pointer-types] collookup[mindex-1], ndatmss[mindex-1], irref[mindex-1]); ~~~~~~~~~^~~~~~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:808:17: note: expected 'const MTZCOL **' {aka 'const struct **'} but argument is of type 'MTZCOL **' {aka 'struct **'} const MTZCOL *lookup[], const int ncols, const int iref); ~~~~~~~~~~~~~~^~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhist_': fortran/cmtzlib_f.c:1807:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] MtzAddHistory(mtzdata[*mindx-1], hstrng, *nlines); ^~~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhstl_': fortran/cmtzlib_f.c:1859:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] MtzAddHistory(mtzdata[*mindx-1], hline, 1); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'char *' int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwassn_': fortran/cmtzlib_f.c:2432:46: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[31]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c:2432:60: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[3]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwclab_': fortran/cmtzlib_f.c:2510:44: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[31]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ fortran/cmtzlib_f.c:2510:58: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); ^~~~ In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:10: note: expected 'const char (*)[3]' but argument is of type 'char *' MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, ^~~~~~~~~~~ libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/ccplib.f -fPIC -o fortran/.libs/ccplib.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/fftlib.lo fortran/fftlib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/fftlib.f -fPIC -o fortran/.libs/fftlib.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/modlib.lo fortran/modlib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/modlib.f -fPIC -o fortran/.libs/modlib.o fortran/modlib.f:1386:18: fortran/modlib.f:1383:72: DO 20 J = 2,M 2 fortran/modlib.f:1386:18: A(I,J) = A(J,I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1388:16: fortran/modlib.f:1383:72: DO 20 J = 2,M 2 fortran/modlib.f:1388:16: ALPHA(J) = A(J,J) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1388:25: fortran/modlib.f:1383:72: DO 20 J = 2,M 2 fortran/modlib.f:1388:25: ALPHA(J) = A(J,J) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1441:20: DO 120 I = 2,M 2 H = ALPHA(I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:16: fortran/modlib.f:1440:72: DO 120 I = 2,M 2 fortran/modlib.f:1442:16: ALPHA(I) = A(I,I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:25: fortran/modlib.f:1440:72: DO 120 I = 2,M 2 fortran/modlib.f:1442:25: ALPHA(I) = A(I,I) 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1443:14: fortran/modlib.f:1440:72: DO 120 I = 2,M 2 fortran/modlib.f:1443:14: A(I,I) = H 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/parser.lo fortran/parser.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/parser.f -fPIC -o fortran/.libs/parser.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/rwbrook.lo fortran/rwbrook.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/rwbrook.f -fPIC -o fortran/.libs/rwbrook.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/libhtml.lo fortran/libhtml.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/libhtml.f -fPIC -o fortran/.libs/libhtml.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/keyparse.lo fortran/keyparse.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/keyparse.f -fPIC -o fortran/.libs/keyparse.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/dna_output.lo fortran/dna_output.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/dna_output.f -fPIC -o fortran/.libs/dna_output.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/pack_f.lo fortran/pack_f.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/pack_f.f -fPIC -o fortran/.libs/pack_f.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/pxxml.lo fortran/pxxml.f /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/lgglib.lo fortran/lgglib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/pxxml.f -fPIC -o fortran/.libs/pxxml.o libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/lgglib.f -fPIC -o fortran/.libs/lgglib.o fortran/lgglib.f:1239:72: CALL matmult(3,3,3,1,ORTH,B3,XYZ,B1) 1 Warning: More actual than formal arguments in procedure call at (1) fortran/lgglib.f:1277:72: CALL matmult(3,3,3,1,ORTH,B3,XYZ,B1) 1 Warning: More actual than formal arguments in procedure call at (1) fortran/lgglib.f:1315:72: 1 , (X(I,NATM),I=1,3) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1369:72: 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1429:72: 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1489:72: 1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1546:72: 1 , (X(I,NATM),I=1,3) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1598:72: 1 SEQ(NATM), RES(NATM), ATOM(NATM) 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:2424:10: do j = 1, 4 2 rt(j,4) = gt(4,j) 1 Warning: Array reference at (1) out of bounds (4 > 3) in loop beginning at (2) /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/plot84lib.lo fortran/plot84lib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/plot84lib.f -fPIC -o fortran/.libs/plot84lib.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/plotsubs.lo fortran/plotsubs.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/plotsubs.f -fPIC -o fortran/.libs/plotsubs.o fortran/plot84lib.f:8301:22: CALL AXIS(X,Y,HTEXT,NCHAR,AXLEN,ANGLE,FVAL,DV) 1 Warning: Rank mismatch in argument 'label' at (1) (scalar and rank-1) [-Wargument-mismatch] fortran/plot84lib.f:10427:19: CALL TRIPLOT(ICLEAR,1) 1 Warning: Rank mismatch in argument 'line' at (1) (rank-1 and scalar) [-Wargument-mismatch] /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/sorting_main.lo fortran/sorting_main.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/sorting_main.f -fPIC -o fortran/.libs/sorting_main.o /bin/bash ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c -o fortran/unix.lo fortran/unix.f libtool: compile: gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -c fortran/unix.f -fPIC -o fortran/.libs/unix.o /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o ccp4/libccp4c.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_array.lo ccp4/cmap_data.lo ccp4/cmtzlib.lo ccp4/ccp4_general.lo ccp4/cmap_header.lo ccp4/csymlib.lo ccp4/ccp4_parser.lo ccp4/cmap_labels.lo ccp4/cvecmat.lo ccp4/ccp4_program.lo ccp4/cmap_open.lo ccp4/library_err.lo ccp4/ccp4_unitcell.lo ccp4/cmap_skew.lo ccp4/library_file.lo ccp4/cmap_accessor.lo ccp4/cmap_stats.lo ccp4/library_utils.lo ccp4/cmap_close.lo ccp4/cmap_symop.lo ccp4/pack_c.lo -lm libtool: link: gcc -shared -fPIC -DPIC ccp4/.libs/ccp4_array.o ccp4/.libs/cmap_data.o ccp4/.libs/cmtzlib.o ccp4/.libs/ccp4_general.o ccp4/.libs/cmap_header.o ccp4/.libs/csymlib.o ccp4/.libs/ccp4_parser.o ccp4/.libs/cmap_labels.o ccp4/.libs/cvecmat.o ccp4/.libs/ccp4_program.o ccp4/.libs/cmap_open.o ccp4/.libs/library_err.o ccp4/.libs/ccp4_unitcell.o ccp4/.libs/cmap_skew.o ccp4/.libs/library_file.o ccp4/.libs/cmap_accessor.o ccp4/.libs/cmap_stats.o ccp4/.libs/library_utils.o ccp4/.libs/cmap_close.o ccp4/.libs/cmap_symop.o ccp4/.libs/pack_c.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4c.so.0 -o ccp4/.libs/libccp4c.so.0.0.0 libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so.0" && ln -s "libccp4c.so.0.0.0" "libccp4c.so.0") libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so" && ln -s "libccp4c.so.0.0.0" "libccp4c.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libccp4c.la" && ln -s "../libccp4c.la" "libccp4c.la" ) /bin/bash ./libtool --tag=F77 --mode=link gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/arm-linux-gnueabihf fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm libtool: link: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -Wl,-rpath -Wl,/build/libccp4-6.5.1/ccp4/.libs ccp4/.libs/libccp4c.so -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so.0" && ln -s "libccp4f.so.0.0.0" "libccp4f.so.0") libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so" && ln -s "libccp4f.so.0.0.0" "libccp4f.so") libtool: link: ( cd "fortran/.libs" && rm -f "libccp4f.la" && ln -s "../libccp4f.la" "libccp4f.la" ) make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_test make -j3 check VERBOSE=1 make[1]: Entering directory '/build/libccp4-6.5.1' make check-am make[2]: Entering directory '/build/libccp4-6.5.1' make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libccp4-6.5.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libccp4-6.5.1' make install-am make[2]: Entering directory '/build/libccp4-6.5.1' make[3]: Entering directory '/build/libccp4-6.5.1' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ./libtool --mode=install /usr/bin/install -c ccp4/libccp4c.la fortran/libccp4f.la '/build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.so.0.0.0 /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libccp4c.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libccp4c.so.0.0.0 libccp4c.so.0 || { rm -f libccp4c.so.0 && ln -s libccp4c.so.0.0.0 libccp4c.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libccp4c.so.0.0.0 libccp4c.so || { rm -f libccp4c.so && ln -s libccp4c.so.0.0.0 libccp4c.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libccp4c.la libtool: warning: relinking 'fortran/libccp4f.la' libtool: install: (cd /build/libccp4-6.5.1; /bin/bash "/build/libccp4-6.5.1/libtool" --tag F77 --mode=relink gfortran -fno-second-underscore -g -O2 -ffile-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/arm-linux-gnueabihf fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm -inst-prefix-dir /build/libccp4-6.5.1/debian/tmp) libtool: relink: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -L/build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lccp4c -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.so.0.0.0T /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libccp4f.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libccp4f.so.0.0.0 libccp4f.so.0 || { rm -f libccp4f.so.0 && ln -s libccp4f.so.0.0.0 libccp4f.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libccp4f.so.0.0.0 libccp4f.so || { rm -f libccp4f.so && ln -s libccp4f.so.0.0.0 libccp4f.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libccp4f.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_file_err.h ccp4/ccp4_program.h ccp4/ccp4_unitcell.h ccp4/cmap_errno.h ccp4/cmap_stats.h ccp4/csymlib.h ccp4/library_file.h ccp4/w32mvs.h ccp4/ccp4_fortran.h ccp4/ccp4_spg.h ccp4/ccp4_utils.h ccp4/cmap_header.h ccp4/cmaplib.h ccp4/cvecmat.h ccp4/mtzdata.h ccp4/ccp4_array.h ccp4/ccp4_general.h ccp4/ccp4_sysdep.h ccp4/ccp4_vars.h ccp4/cmap_labels.h ccp4/cmaplib_f.h ccp4/overview.h ccp4/ccp4_errno.h ccp4/ccp4_parser.h ccp4/ccp4_types.h ccp4/cmap_data.h ccp4/cmap_skew.h ccp4/cmtzlib.h ccp4/pack_c.h '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 ccp4-config.cmake '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 data/atomsf_neutron.lib data/atomsf_electron.lib data/atomsf.lib data/syminfo.lib data/symop.lib data/font84.ascii '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 libccp4c.pc libccp4f.pc '/build/libccp4-6.5.1/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/build/libccp4-6.5.1' make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' debian/rules override_dh_install make[1]: Entering directory '/build/libccp4-6.5.1' # libccp4-data dh_install -p libccp4-data usr/share # libccp4-dev dh_install -p libccp4-dev usr/include/* dh_install -p libccp4-dev usr/lib/*/lib*.so dh_install -p libccp4-dev usr/lib/*/pkgconfig # libccp4c0 dh_install -p libccp4c0 usr/lib/*/libccp4c*.so.* # libccp4f0 dh_install -p libccp4f0 usr/lib/*/libccp4f*.so.* make[1]: Leaving directory '/build/libccp4-6.5.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing debian/rules override_dh_strip make[1]: Entering directory '/build/libccp4-6.5.1' dh_strip -plibccp4c0 --dbgsym-migration='libccp4c0-dbg (<< 6.5.1-1~)' dh_strip -plibccp4f0 --dbgsym-migration='libccp4f0-dbg (<< 6.5.1-1~)' dh_strip -a -Nlibccp4c0 -Nlibccp4f0 make[1]: Leaving directory '/build/libccp4-6.5.1' dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libccp4-dev' in '../libccp4-dev_6.5.1-1_armhf.deb'. dpkg-deb: building package 'libccp4c0' in '../libccp4c0_6.5.1-1_armhf.deb'. dpkg-deb: building package 'libccp4f0-dbgsym' in '../libccp4f0-dbgsym_6.5.1-1_armhf.deb'. dpkg-deb: building package 'libccp4c0-dbgsym' in '../libccp4c0-dbgsym_6.5.1-1_armhf.deb'. dpkg-deb: building package 'libccp4f0' in '../libccp4f0_6.5.1-1_armhf.deb'. dpkg-deb: building package 'libccp4-data' in '../libccp4-data_6.5.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libccp4_6.5.1-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20120 and its subdirectories I: Current time: Wed May 20 12:18:11 -12 2020 I: pbuilder-time-stamp: 1590020291 Thu May 21 00:18:20 UTC 2020 I: 1st build successful. Starting 2nd build on remote node jtx1b-armhf-rb.debian.net. Thu May 21 00:18:20 UTC 2020 I: Preparing to do remote build '2' on jtx1b-armhf-rb.debian.net. Thu May 21 00:23:17 UTC 2020 I: Deleting $TMPDIR on jtx1b-armhf-rb.debian.net. Thu May 21 00:23:19 UTC 2020 I: libccp4_6.5.1-1_armhf.changes: Format: 1.8 Date: Thu, 03 May 2018 03:31:15 -0400 Source: libccp4 Binary: libccp4-data libccp4-dev libccp4c0 libccp4c0-dbgsym libccp4f0 libccp4f0-dbgsym Architecture: all armhf Version: 6.5.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: libccp4-data - CCP4 core functionality - common files libccp4-dev - CCP4 core functionality - development files libccp4c0 - CCP4 core functionality - C runtime libccp4f0 - CCP4 core functionality - fortran runtime Changes: libccp4 (6.5.1-1) unstable; urgency=medium . * Upload to unstable. * debian/copyright - Added entry for the rest of the files. - HTTP -> HTTPS * debian/compat: bump to 11 * debian/control - Removed useless dependency on dh-autoreconf - Bump Standards-Version 4.1.4 (nothing to do) - Migrated debug symbols package * debian/watch: turning on passive FTP mode Checksums-Sha1: 2105a2c3efc77c8d766a8412bf8e244ea73cb57a 61308 libccp4-data_6.5.1-1_all.deb ef1d1429d058191d9d378b54c78687da3a91ef5a 42376 libccp4-dev_6.5.1-1_armhf.deb e9d788799491a8c2a372a30b5ed1490c9f1b4e0e 5692 libccp4_6.5.1-1_armhf.buildinfo da69590aa662bc37adef9ae632d74ba12e08af6a 229028 libccp4c0-dbgsym_6.5.1-1_armhf.deb 0ed0a8d6ec047022e2baaa678c99d120b89e5593 74904 libccp4c0_6.5.1-1_armhf.deb d65735a2b9ca681fe6ae3caeb30490583a5d930d 415040 libccp4f0-dbgsym_6.5.1-1_armhf.deb 8c6ea1f379148aa959b211048d616a5d303adccc 209804 libccp4f0_6.5.1-1_armhf.deb Checksums-Sha256: 919a1728cd73c60417d0a042c3dece25b0dceda4d2f56fb7eb1d231daec53a0d 61308 libccp4-data_6.5.1-1_all.deb 01acb1bdfebc08e287546bd0f6a9fa984b2909fbc22aa669f95d99adfa3b18e0 42376 libccp4-dev_6.5.1-1_armhf.deb fc7c73a88dde88ccd83477be4981c1cc94a0374b43359d2f34927c4710486ba5 5692 libccp4_6.5.1-1_armhf.buildinfo e1d90b5e829680fcf885be61f998119b68b75ba5ac9a4345b1f78504aca606c7 229028 libccp4c0-dbgsym_6.5.1-1_armhf.deb 21f034c02706e4f818cbaa115e2ebe084834a8d1cbd8c23a2ec991653efdf3b2 74904 libccp4c0_6.5.1-1_armhf.deb 5806fc10cb5d3a1c3667a350d1046d52adf64f858a3878e8d374810f8c861268 415040 libccp4f0-dbgsym_6.5.1-1_armhf.deb 6741a09acc09451ce9fb125ddae0ddbb3e849ded2bc0ac5855a2844e66b061af 209804 libccp4f0_6.5.1-1_armhf.deb Files: e26deebd6c6a2e4dd6e2040ec64a55ee 61308 libdevel optional libccp4-data_6.5.1-1_all.deb 06bc98d9bc5848a2830513b5c7c4a3f7 42376 libdevel optional libccp4-dev_6.5.1-1_armhf.deb 99fad8bc3dd8d72cfdc494cca570a942 5692 science optional libccp4_6.5.1-1_armhf.buildinfo 7138d0dc2ef5e96239aff086c24a991b 229028 debug optional libccp4c0-dbgsym_6.5.1-1_armhf.deb 203c4961366f0e0f51c7d3906a46559d 74904 libs optional libccp4c0_6.5.1-1_armhf.deb d9089f5c92cb0420eb9f783e5185ba1d 415040 debug optional libccp4f0-dbgsym_6.5.1-1_armhf.deb 20d7caaf9ca842743d6cb30ad9216436 209804 libs optional libccp4f0_6.5.1-1_armhf.deb Thu May 21 00:23:21 UTC 2020 I: diffoscope 144 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.CRVD63JIfK/libccp4_6.5.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.CRVD63JIfK/libccp4_6.5.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.CRVD63JIfK/libccp4_6.5.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.CRVD63JIfK/b1/libccp4_6.5.1-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.CRVD63JIfK/b2/libccp4_6.5.1-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.254s) 0.253s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.065s) 0.065s 10 calls diffoscope.comparators.binary.FilesystemFile Thu May 21 00:23:27 UTC 2020 I: diffoscope 144 found no differences in the changes files, and a .buildinfo file also exists. Thu May 21 00:23:27 UTC 2020 I: libccp4 from buster built successfully and reproducibly on armhf. Thu May 21 00:23:28 UTC 2020 I: Submitting .buildinfo files to external archives: Thu May 21 00:23:28 UTC 2020 I: Submitting 8.0K b1/libccp4_6.5.1-1_armhf.buildinfo.asc Thu May 21 00:23:29 UTC 2020 I: Submitting 8.0K b2/libccp4_6.5.1-1_armhf.buildinfo.asc Thu May 21 00:23:30 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 21 00:23:30 UTC 2020 I: Done submitting .buildinfo files. Thu May 21 00:23:30 UTC 2020 I: Removing signed libccp4_6.5.1-1_armhf.buildinfo.asc files: removed './b1/libccp4_6.5.1-1_armhf.buildinfo.asc' removed './b2/libccp4_6.5.1-1_armhf.buildinfo.asc'