Thu May 28 15:54:33 UTC 2020 I: starting to build libbio-primerdesigner-perl/buster/armhf on jenkins on '2020-05-28 15:54' Thu May 28 15:54:33 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_38/3251/console.log Thu May 28 15:54:33 UTC 2020 I: Downloading source for buster/libbio-primerdesigner-perl=0.07-6 --2020-05-28 15:54:33-- http://deb.debian.org/debian/pool/main/libb/libbio-primerdesigner-perl/libbio-primerdesigner-perl_0.07-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2392 (2.3K) Saving to: ‘libbio-primerdesigner-perl_0.07-6.dsc’ 0K .. 100% 238M=0s 2020-05-28 15:54:33 (238 MB/s) - ‘libbio-primerdesigner-perl_0.07-6.dsc’ saved [2392/2392] Thu May 28 15:54:33 UTC 2020 I: libbio-primerdesigner-perl_0.07-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all Version: 0.07-6 Maintainer: Debian Perl Group Uploaders: gregor herrmann , Charles Plessy Homepage: https://metacpan.org/release/Bio-PrimerDesigner Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-primerdesigner-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper (>= 11~), libmodule-build-perl Build-Depends-Indep: perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr Package-List: libbio-primerdesigner-perl deb perl optional arch=all Checksums-Sha1: 11eedf053c8a1a356ab0d75e78719e877ed6888c 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz 8a86a58a8250ba6af5b74bc5eb45e21251e12fdd 5512 libbio-primerdesigner-perl_0.07-6.debian.tar.xz Checksums-Sha256: 871b2dbd86e11721d01924e13d7598fc2ec0573f747a2f2297e33d6f30be7908 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz f3540005ed196c8940f5ed6e5ce37670ee0eff3291d7ba508408bf9151e861eb 5512 libbio-primerdesigner-perl_0.07-6.debian.tar.xz Files: 356e05bc5d855d2942c2825540c6eb05 27277 libbio-primerdesigner-perl_0.07.orig.tar.gz 81021f2a2e413ac1b8cfbc272bd7d2d8 5512 libbio-primerdesigner-perl_0.07-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltPA5IRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGhBxAAk9FeNQvU7nFjgoTLsq8Dk6L00H6vIOBK fgLqtPJcmMJwAbQG/nOIiTUeBif9L9HWPysVKVjo05X/Bxlm6pT1cr1XvSIyw9Sh MLNnzsGNWa//AxkwggmvBkI5uiWZfLuIkpQqBbImXJ7nyZ2CxXyHyxTAFPb3ra7W 80dTnk7Ua2zY9s8PZFBmocsORO+JQ2Q5hRQN63GsMOX5OVWKo0XFKzQE62JSuSjp xWHK/qo5smFn/l14eg40QPf/rnYznvdv7jO4aNoXPP1ldVBKPvcOBO8Pzw5aV2HE tLfMjprqlvGtcuwaL2YTuBBEyN2yCRH5I3q2Lzg3xzKciAEJYpFEe9HrLnjewakk EvlELvTscx+VRAnDPAFOHVBbf5L6uWwSO+OhmdkfjteQB7m4RS+Wc3NJSvHoY1X6 e9ClC6yND7lme4NEqTijErLqARKNMEMZtJeHZhErsIWhYlLAIyQXmH106wEQqkOU izNg2br4a7s8CV8cASR+drfno5r53Ka5l0IJUTZjYa4YgEolnix0WRF6o7LutgqX 7LM5BxzesBk916Q+YZrlaEJ3zSQbQLoFBR/X92jJRyXKG6Iok+yX5r3YkhPmBqiq Usr2aPDHWdc+8SRTVVederS1BGWiSub65AO58yqHe1l5SgMJMEhuCrDEyBCk6ecS 18rAzGPusqA= =d9Ps -----END PGP SIGNATURE----- Thu May 28 15:54:33 UTC 2020 I: Checking whether the package is not for us Thu May 28 15:54:33 UTC 2020 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Thu May 28 15:54:33 UTC 2020 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Thu May 28 15:57:34 UTC 2020 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 28 03:54:47 -12 2020 I: pbuilder-time-stamp: 1590681287 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-primerdesigner-perl_0.07-6.dsc] I: copying [./libbio-primerdesigner-perl_0.07.orig.tar.gz] I: copying [./libbio-primerdesigner-perl_0.07-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jul 17 21:08:34 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbio-primerdesigner-perl_0.07-6.dsc dpkg-source: info: extracting libbio-primerdesigner-perl in libbio-primerdesigner-perl-0.07 dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07.orig.tar.gz dpkg-source: info: unpacking libbio-primerdesigner-perl_0.07-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.pl-getopt-long.patch dpkg-source: info: applying no-hash-manipulation-inside-each.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libmodule-build-perl, perl, libwww-perl, libclass-base-perl, libreadonly-perl, libtest-pod-perl, libtest-pod-coverage-perl, primer3, ncbi-epcr dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libclass-base-perl; however: Package libclass-base-perl is not installed. pbuilder-satisfydepends-dummy depends on libreadonly-perl; however: Package libreadonly-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-perl; however: Package libtest-pod-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-pod-coverage-perl; however: Package libtest-pod-coverage-perl is not installed. pbuilder-satisfydepends-dummy depends on primer3; however: Package primer3 is not installed. pbuilder-satisfydepends-dummy depends on ncbi-epcr; however: Package ncbi-epcr is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libclass-base-perl{a} libclone-perl{a} libcroco3{a} libdevel-symdump-perl{a} libelf1{a} libencode-locale-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu63{a} libio-html-perl{a} libio-socket-ssl-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libpod-coverage-perl{a} libreadonly-perl{a} libsigsegv2{a} libssl1.1{a} libtest-pod-coverage-perl{a} libtest-pod-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} ncbi-epcr{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} primer3{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libdata-dump-perl libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 22.6 MB of archives. After unpacking 73.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf netbase all 5.6 [19.4 kB] Get: 8 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 11 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 12 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 14 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 20 http://deb.debian.org/debian buster/main armhf openssl armhf 1.1.1d-0+deb10u3 [818 kB] Get: 21 http://deb.debian.org/debian buster/main armhf ca-certificates all 20190110 [157 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 23 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 26 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 28 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 34 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 35 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 37 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libclone-perl armhf 0.41-1+b1 [14.0 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libclass-base-perl all 0.09-1 [18.1 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libdevel-symdump-perl all 2.18-3 [17.3 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libencode-locale-perl all 1.05-1 [13.7 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libhttp-date-perl all 6.02-1 [10.7 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libfile-listing-perl all 6.04-1 [10.3 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 46 http://deb.debian.org/debian buster/main armhf liburi-perl all 1.76-1 [89.9 kB] Get: 47 http://deb.debian.org/debian buster/main armhf libhtml-parser-perl armhf 3.72-3+b3 [102 kB] Get: 48 http://deb.debian.org/debian buster/main armhf libhtml-tree-perl all 5.07-2 [213 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libio-html-perl all 1.001-1 [17.6 kB] Get: 50 http://deb.debian.org/debian buster/main armhf liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libhttp-message-perl all 6.18-1 [77.8 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 54 http://deb.debian.org/debian buster/main armhf perl-openssl-defaults armhf 3 [6782 B] Get: 55 http://deb.debian.org/debian buster/main armhf libnet-ssleay-perl armhf 1.85-2+b1 [288 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libnet-http-perl all 6.18-1 [24.5 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 59 http://deb.debian.org/debian buster/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 60 http://deb.debian.org/debian buster/main armhf libwww-perl all 6.36-2 [188 kB] Get: 61 http://deb.debian.org/debian buster/main armhf liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 62 http://deb.debian.org/debian buster/main armhf libmodule-build-perl all 0.422400-1 [259 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libpod-coverage-perl all 0.23-1 [23.9 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libreadonly-perl all 2.050-1 [22.7 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libtest-pod-coverage-perl all 1.10-2 [14.5 kB] Get: 66 http://deb.debian.org/debian buster/main armhf libtest-pod-perl all 1.52-1 [14.2 kB] Get: 67 http://deb.debian.org/debian buster/main armhf ncbi-epcr armhf 2.3.12-1-7 [101 kB] Get: 68 http://deb.debian.org/debian buster/main armhf primer3 armhf 2.4.0-2 [166 kB] Fetched 22.6 MB in 22s (1023 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package netbase. Preparing to unpack .../06-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../12-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. 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Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libbio-primerdesigner-perl-0.07/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libbio-primerdesigner-perl dpkg-buildpackage: info: source version 0.07-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem=perl_build dh_auto_clean -O--buildsystem=perl_build dh_autoreconf_clean -O--buildsystem=perl_build dh_clean -O--buildsystem=perl_build debian/rules build dh build --buildsystem=perl_build dh_update_autotools_config -O--buildsystem=perl_build dh_autoreconf -O--buildsystem=perl_build dh_auto_configure -O--buildsystem=perl_build perl Build.PL --installdirs vendor --config "optimize=-g -O2 -ffile-prefix-map=/build/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/build/libbio-primerdesigner-perl-0.07=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Use of uninitialized value $url in concatenation (.) or string at Build.PL line 62, <$in_fh> line 42. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-PrimerDesigner' version '0.04' Now run './Build' and './Build install' dh_auto_build -O--buildsystem=perl_build perl Build Building Bio-PrimerDesigner debian/rules override_dh_auto_test make[1]: Entering directory '/build/libbio-primerdesigner-perl-0.07' RES_OPTIONS=attempts:0 dh_auto_test -- --test_files "t/tables.t t/result.t t/primer3.t t/epcr.t t/pod.t t/primer_designer.t t/pod-coverage.t" perl Build test --verbose 1 --test_files "t/tables.t t/result.t t/primer3.t t/epcr.t t/pod.t t/primer_designer.t t/pod-coverage.t" Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/tables.t ........... 1..10 ok 1 - use Bio::PrimerDesigner::Tables; ok 2 - An object of class 'Bio::PrimerDesigner::Tables' isa 'Bio::PrimerDesigner::Tables' ok 3 # skip Can't get remote server call to work ok 4 # skip Can't get remote server call to work ok 5 # skip Can't get remote server call to work ok 6 # skip Can't get remote server call to work ok 7 # skip Can't get remote server call to work ok 8 # skip Can't get remote server call to work ok 9 # skip Can't get remote server call to work ok 10 # skip Can't get remote server call to work ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/result.t ........... 1..3 ok 1 - use Bio::PrimerDesigner; ok 2 # skip Can't get remote server call to work ok 3 # skip Can't get remote server call to work ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer3.t .......... 1..7 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::primer3' ok 4 - binary_name is "primer3" ok 5 - program returns params ok 6 - program returns aliases ok 7 - design method fails without arguments ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/epcr.t ............. 1..8 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 4 - binary_name is "e-PCR" ok 5 - program returns params ok 6 - program returns no aliases ok 7 - e-PCR verification fails with no args ok 8 - run method fails with no arguments ok t/pod.t .............. 1..9 ok 1 - POD test for blib/script/primer_designer ok 2 - POD test for blib/lib/Bio/PrimerDesigner.pm ok 3 - POD test for blib/lib/Bio/PrimerDesigner/ispcr.pm ok 4 - POD test for blib/lib/Bio/PrimerDesigner/primer3.pm ok 5 - POD test for blib/lib/Bio/PrimerDesigner/epcr.pm ok 6 - POD test for blib/lib/Bio/PrimerDesigner/Remote.pm ok 7 - POD test for blib/lib/Bio/PrimerDesigner/Tables.pm ok 8 - POD test for blib/lib/Bio/PrimerDesigner/Result.pm ok 9 - POD test for blib/lib/Bio/PrimerDesigner/Config.pm ok Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. Use of uninitialized value in lc at /build/libbio-primerdesigner-perl-0.07/blib/lib/Bio/PrimerDesigner.pm line 244. t/primer_designer.t .. 1..22 ok 1 - use Bio::PrimerDesigner; ok 2 - An object of class 'Bio::PrimerDesigner' isa 'Bio::PrimerDesigner' ok 3 - An object of class 'Bio::PrimerDesigner::primer3' isa 'Bio::PrimerDesigner::primer3' ok 4 - Default method for unix-like OS is "local" ok 5 - Default binary path for unix-like OS is "/usr/local/bin" ok 6 - binary_path set to "/bin" ok 7 - binary_path rejects bad arg ok 8 - Error message set ok 9 - binary_path remembers last good arg ok 10 - 'object with args' isa 'Bio::PrimerDesigner' ok 11 - method is "remote" ok 12 - url is "https://www.google.com/" ok 13 - An object of class 'Bio::PrimerDesigner::epcr' isa 'Bio::PrimerDesigner::epcr' ok 14 - method set to "remote" ok 15 - method rejects bad arg ok 16 - Error message set ok 17 - method remembers last good arg ok 18 - url set to "http://www.google.com" ok 19 - 'program' isa 'Bio::PrimerDesigner::epcr' ok 20 - program rejects bad arg ok 21 - Error message set ok 22 - 'program still' isa 'Bio::PrimerDesigner::epcr' ok t/pod-coverage.t ..... 1..8 ok 1 - Pod coverage on Bio::PrimerDesigner ok 2 - Pod coverage on Bio::PrimerDesigner::ispcr ok 3 - Pod coverage on Bio::PrimerDesigner::primer3 ok 4 - Pod coverage on Bio::PrimerDesigner::epcr ok 5 - Pod coverage on Bio::PrimerDesigner::Remote ok 6 - Pod coverage on Bio::PrimerDesigner::Tables ok 7 - Pod coverage on Bio::PrimerDesigner::Result ok 8 - Pod coverage on Bio::PrimerDesigner::Config ok All tests successful. Files=7, Tests=67, 8 wallclock secs ( 0.23 usr 0.07 sys + 7.26 cusr 0.74 csys = 8.30 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-primerdesigner-perl-0.07' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=perl_build dh_testroot -O--buildsystem=perl_build dh_prep -O--buildsystem=perl_build debian/rules override_dh_auto_install make[1]: Entering directory '/build/libbio-primerdesigner-perl-0.07' dh_auto_install perl Build install --destdir /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl --create_packlist 0 Building Bio-PrimerDesigner Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man1/primer_designer.1p Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/ispcr.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/primer3.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/epcr.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Remote.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Tables.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Result.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/perl5/Bio/PrimerDesigner/Config.pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Remote.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::primer3.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Result.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::epcr.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Tables.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::ispcr.3pm Installing /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/bin/primer_designer # remove empty manpage without whatis entry rm -f -v /build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm removed '/build/libbio-primerdesigner-perl-0.07/debian/libbio-primerdesigner-perl/usr/share/man/man3/Bio::PrimerDesigner::Config.3pm' make[1]: Leaving directory '/build/libbio-primerdesigner-perl-0.07' dh_installdocs -O--buildsystem=perl_build dh_installchangelogs -O--buildsystem=perl_build dh_installman -O--buildsystem=perl_build dh_installinit -O--buildsystem=perl_build dh_perl -O--buildsystem=perl_build dh_link -O--buildsystem=perl_build dh_strip_nondeterminism -O--buildsystem=perl_build dh_compress -O--buildsystem=perl_build dh_fixperms -O--buildsystem=perl_build dh_missing -O--buildsystem=perl_build dh_installdeb -O--buildsystem=perl_build dh_gencontrol -O--buildsystem=perl_build dh_md5sums -O--buildsystem=perl_build dh_builddeb -O--buildsystem=perl_build dpkg-deb: building package 'libbio-primerdesigner-perl' in '../libbio-primerdesigner-perl_0.07-6_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbio-primerdesigner-perl_0.07-6_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9977 and its subdirectories I: Current time: Thu May 28 03:57:30 -12 2020 I: pbuilder-time-stamp: 1590681450 Thu May 28 15:57:37 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ff2b-armhf-rb.debian.net. Thu May 28 15:57:37 UTC 2020 I: Preparing to do remote build '2' on ff2b-armhf-rb.debian.net. Thu May 28 15:59:06 UTC 2020 I: Deleting $TMPDIR on ff2b-armhf-rb.debian.net. Thu May 28 15:59:09 UTC 2020 I: libbio-primerdesigner-perl_0.07-6_armhf.changes: Format: 1.8 Date: Wed, 18 Jul 2018 10:56:36 +0200 Source: libbio-primerdesigner-perl Binary: libbio-primerdesigner-perl Architecture: all Version: 0.07-6 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-primerdesigner-perl - Perl module to design PCR primers using primer3 and epcr Changes: libbio-primerdesigner-perl (0.07-6) unstable; urgency=medium . * Team upload. . [ Salvatore Bonaccorso ] * Update Vcs-* headers for switch to salsa.debian.org . [ Andreas Tille ] * debhelper 11 * Standards-Version: 4.1.5 Checksums-Sha1: 6e7b7dfa455d5bcb3db338830b04d89e0dc3464d 44720 libbio-primerdesigner-perl_0.07-6_all.deb c078e1d8e5e8fc03b3d4400af7c5c140408e048a 5433 libbio-primerdesigner-perl_0.07-6_armhf.buildinfo Checksums-Sha256: 9e3372abd6247ab47d37c9f55f8d5d86531ed999c41e2c6b7c4f58070c5c44fc 44720 libbio-primerdesigner-perl_0.07-6_all.deb c4473f96ee7e4a5d5aa1559ddf3ee02b395df2513e83597cce9e571329443b8c 5433 libbio-primerdesigner-perl_0.07-6_armhf.buildinfo Files: 04181e705592833f567ecfeece9fe25b 44720 perl optional libbio-primerdesigner-perl_0.07-6_all.deb 3ad4749be40c3585b9059213dc40b8b8 5433 perl optional libbio-primerdesigner-perl_0.07-6_armhf.buildinfo Thu May 28 15:59:10 UTC 2020 I: diffoscope 145 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.nGUbAefeIJ/libbio-primerdesigner-perl_0.07-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.nGUbAefeIJ/libbio-primerdesigner-perl_0.07-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.nGUbAefeIJ/libbio-primerdesigner-perl_0.07-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.nGUbAefeIJ/b1/libbio-primerdesigner-perl_0.07-6_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.nGUbAefeIJ/b2/libbio-primerdesigner-perl_0.07-6_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.228s) 0.228s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 10 calls diffoscope.comparators.binary.FilesystemFile Thu May 28 15:59:12 UTC 2020 I: diffoscope 145 found no differences in the changes files, and a .buildinfo file also exists. Thu May 28 15:59:12 UTC 2020 I: libbio-primerdesigner-perl from buster built successfully and reproducibly on armhf. Thu May 28 15:59:13 UTC 2020 I: Submitting .buildinfo files to external archives: Thu May 28 15:59:13 UTC 2020 I: Submitting 8.0K b1/libbio-primerdesigner-perl_0.07-6_armhf.buildinfo.asc Thu May 28 15:59:15 UTC 2020 I: Submitting 8.0K b2/libbio-primerdesigner-perl_0.07-6_armhf.buildinfo.asc Thu May 28 15:59:16 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 28 15:59:16 UTC 2020 I: Done submitting .buildinfo files. Thu May 28 15:59:16 UTC 2020 I: Removing signed libbio-primerdesigner-perl_0.07-6_armhf.buildinfo.asc files: removed './b1/libbio-primerdesigner-perl_0.07-6_armhf.buildinfo.asc' removed './b2/libbio-primerdesigner-perl_0.07-6_armhf.buildinfo.asc'