Mon May 25 14:35:18 UTC 2020 I: starting to build fastp/buster/armhf on jenkins on '2020-05-25 14:34' Mon May 25 14:35:18 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_49/1387/console.log Mon May 25 14:35:18 UTC 2020 I: Downloading source for buster/fastp=0.19.6+dfsg-1 --2020-05-25 14:35:18-- http://deb.debian.org/debian/pool/main/f/fastp/fastp_0.19.6+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1980 (1.9K) Saving to: ‘fastp_0.19.6+dfsg-1.dsc’ 0K . 100% 180M=0s 2020-05-25 14:35:18 (180 MB/s) - ‘fastp_0.19.6+dfsg-1.dsc’ saved [1980/1980] Mon May 25 14:35:18 UTC 2020 I: fastp_0.19.6+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fastp Binary: fastp Architecture: any Version: 0.19.6+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://github.com/OpenGene/fastp Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/fastp Vcs-Git: https://salsa.debian.org/med-team/fastp.git Testsuite: autopkgtest Build-Depends: debhelper (>= 12), help2man, zlib1g-dev Package-List: fastp deb science optional arch=any Checksums-Sha1: 7ffabc099b53b20d94b387b2f063456362ef12e1 57036 fastp_0.19.6+dfsg.orig.tar.xz 8f0f8689187f0ccf2eb8d748a2f295cc86b17f03 3700 fastp_0.19.6+dfsg-1.debian.tar.xz Checksums-Sha256: 0e1d93378d2ccc0edf306687bf6f282853ba1951c3c9c860be76541d064ed5b0 57036 fastp_0.19.6+dfsg.orig.tar.xz ead0ad9a3f6dd252de64ada900597fb18b77028995a3f2c1dfc023a4d9ac3894 3700 fastp_0.19.6+dfsg-1.debian.tar.xz Files: 6c04036e66b98bef15a6cbf8eeae1101 57036 fastp_0.19.6+dfsg.orig.tar.xz 31c6fcb7c9f179b23dc12d12e1c181ef 3700 fastp_0.19.6+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAlxCRPASHGRhaXNzaUBk ZWJpYW4ub3JnAAoJEGEu8WE+BQ9UE8EP/iVFh6HGpe/un9VskJWoQyyeemEBPQGZ HtxcmmCR9QIv3i6vPJNbFIbjIbUsKaN53ovS0Wm/eXJqpwvuX2UUp2ShyRoRJm2f a2huVRSivYadbmXw8hthzYjFdjYJPYCt9vUIYhAOKlFGLPC9NCXu1dBtnsQ1b/d/ fe63EtosIcZE/LWppWku6NyRx5qStiTq+bgONRD3UVwlzdiOI1I+4LB0KV3ZKT/k 3zRHiFn3QiUJg0ymXorIJvSUJMnhjw3Fm/YTEaXXgZBnujyxLpAIBg3Eu3CYhjuQ RzlQ/LehN70VRLHILCQYR1L8B4/VzUb++Icn0y8vhwcVejWS/clbj1/ljLKACiV0 9s/xPQEkiQCbs11nRN5vlOTms5tWvDuVVw69XpanndLLg3c1BqNYPeO96SSdr/Eb GZZ/K+AyA1VhTTrGt8IcwCEY6dv3rW56VFORIB2AYmj5luyI9Il2YKreDKNoH9cM HP5o4BpqWeHKJYLKcl3GiFODrkX9RxEVsagMsyWb569S7TGSsJBsN4lsllkQBlIx 6sG3X3jWmQte+W5T8X0U4n1mqhT4brEaUmEiF0J7erPDJtJrIEn14AIjYDKBk+FU pZIttli2Z8repPllRWtakEnnXpV0Wd3RCFQ7W0o4/aA3JKDxEPiK6pd6NzPVOB/g RlZgjHmEfND6 =+boT -----END PGP SIGNATURE----- Mon May 25 14:35:18 UTC 2020 I: Checking whether the package is not for us Mon May 25 14:35:18 UTC 2020 I: Starting 1st build on remote node jtx1b-armhf-rb.debian.net. Mon May 25 14:35:18 UTC 2020 I: Preparing to do remote build '1' on jtx1b-armhf-rb.debian.net. Mon May 25 14:38:54 UTC 2020 I: Deleting $TMPDIR on jtx1b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 25 02:35:33 -12 2020 I: pbuilder-time-stamp: 1590417333 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastp_0.19.6+dfsg-1.dsc] I: copying [./fastp_0.19.6+dfsg.orig.tar.xz] I: copying [./fastp_0.19.6+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 18 09:28:16 2019 -12 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastp_0.19.6+dfsg-1.dsc dpkg-source: info: extracting fastp in fastp-0.19.6+dfsg dpkg-source: info: unpacking fastp_0.19.6+dfsg.orig.tar.xz dpkg-source: info: unpacking fastp_0.19.6+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12), help2man, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 64.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf liblocale-gettext-perl armhf 1.07-3+b4 [18.4 kB] Get: 8 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 11 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 12 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 14 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 25 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 31 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 32 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 35 http://deb.debian.org/debian buster/main armhf help2man armhf 1.47.8 [176 kB] Get: 36 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Fetched 18.6 MB in 2s (9132 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-3+b4_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../12-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../23-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../25-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../26-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../27-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../28-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../29-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package help2man. Preparing to unpack .../34-help2man_1.47.8_armhf.deb ... Unpacking help2man (1.47.8) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../35-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up help2man (1.47.8) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/fastp-0.19.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package fastp dpkg-buildpackage: info: source version 0.19.6+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/fastp-0.19.6+dfsg' dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/fastp-0.19.6+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/stats.cpp -o obj/stats.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/htmlreporter.cpp -o obj/htmlreporter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/writerthread.cpp -o obj/writerthread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/sequence.cpp -o obj/sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/basecorrector.cpp -o obj/basecorrector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/unittest.cpp -o obj/unittest.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/threadconfig.cpp -o obj/threadconfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/filterresult.cpp -o obj/filterresult.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/read.cpp -o obj/read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/overlapanalysis.cpp -o obj/overlapanalysis.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/duplicate.cpp -o obj/duplicate.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/fastqreader.cpp -o obj/fastqreader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/writer.cpp -o obj/writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/umiprocessor.cpp -o obj/umiprocessor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/peprocessor.cpp -o obj/peprocessor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/polyx.cpp -o obj/polyx.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/adaptertrimmer.cpp -o obj/adaptertrimmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/nucleotidetree.cpp -o obj/nucleotidetree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/evaluator.cpp -o obj/evaluator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/options.cpp -o obj/options.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/processor.cpp -o obj/processor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/main.cpp -o obj/main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/seprocessor.cpp -o obj/seprocessor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/filter.cpp -o obj/filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/jsonreporter.cpp -o obj/jsonreporter.o g++ ./obj/stats.o ./obj/htmlreporter.o ./obj/writerthread.o ./obj/sequence.o ./obj/basecorrector.o ./obj/unittest.o ./obj/threadconfig.o ./obj/filterresult.o ./obj/read.o ./obj/overlapanalysis.o ./obj/duplicate.o ./obj/fastqreader.o ./obj/writer.o ./obj/umiprocessor.o ./obj/peprocessor.o ./obj/polyx.o ./obj/adaptertrimmer.o ./obj/nucleotidetree.o ./obj/evaluator.o ./obj/options.o ./obj/processor.o ./obj/main.o ./obj/seprocessor.o ./obj/filter.o ./obj/jsonreporter.o -o fastp -Wl,-z,relro -Wl,-z,now -lz -lpthread make[2]: Leaving directory '/build/fastp-0.19.6+dfsg' help2man --no-discard-stderr --name="ultra-fast all-in-one FASTQ preprocessor" ./fastp > fastp.1 make[1]: Leaving directory '/build/fastp-0.19.6+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/fastp-0.19.6+dfsg' dh_installman fastp.1 make[1]: Leaving directory '/build/fastp-0.19.6+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/fastp/usr/bin/fastp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastp-dbgsym' in '../fastp-dbgsym_0.19.6+dfsg-1_armhf.deb'. dpkg-deb: building package 'fastp' in '../fastp_0.19.6+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fastp_0.19.6+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31445 and its subdirectories I: Current time: Mon May 25 02:38:30 -12 2020 I: pbuilder-time-stamp: 1590417510 Mon May 25 14:38:58 UTC 2020 I: 1st build successful. Starting 2nd build on remote node bbx15-armhf-rb.debian.net. Mon May 25 14:38:58 UTC 2020 I: Preparing to do remote build '2' on bbx15-armhf-rb.debian.net. Mon May 25 14:43:41 UTC 2020 I: Deleting $TMPDIR on bbx15-armhf-rb.debian.net. Mon May 25 14:43:44 UTC 2020 I: fastp_0.19.6+dfsg-1_armhf.changes: Format: 1.8 Date: Fri, 18 Jan 2019 22:24:34 +0100 Source: fastp Binary: fastp fastp-dbgsym Architecture: armhf Version: 0.19.6+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: fastp - Ultra-fast all-in-one FASTQ preprocessor Changes: fastp (0.19.6+dfsg-1) unstable; urgency=medium . * New upstream release. * Remove patches, accepted upstream. * Add patch to inject compiler flags. * Standards-Version: 4.3.0. * Bump debhelper compat to 12. Checksums-Sha1: a3c4a5a568bf849266e4ea2145b36e33b6d02db5 2344504 fastp-dbgsym_0.19.6+dfsg-1_armhf.deb 7597f063d218429d7bf0562348aab9fa2b498f6a 4596 fastp_0.19.6+dfsg-1_armhf.buildinfo 22c2cbeac88d388515bb7b2d2de45d7a4200da8d 138548 fastp_0.19.6+dfsg-1_armhf.deb Checksums-Sha256: e39c696f5bfb5e0d6b02a0d37d6eff7df8af362a3a1d63f5286cb797d82f7ae1 2344504 fastp-dbgsym_0.19.6+dfsg-1_armhf.deb 021a93827ed72726770214b083c4b69a807cd8b96c3ee6594186295ed5e5d1fa 4596 fastp_0.19.6+dfsg-1_armhf.buildinfo 85059ff7e3075e197bfc5323f237215c6b5dc503e02caf830962d1c7503e24a7 138548 fastp_0.19.6+dfsg-1_armhf.deb Files: 882bf52f0e0d882f13ca5aff95fbba2c 2344504 debug optional fastp-dbgsym_0.19.6+dfsg-1_armhf.deb 858338caff361e1252176074386f04c0 4596 science optional fastp_0.19.6+dfsg-1_armhf.buildinfo 86e2c4455d535eaf7742b6ca91ab2c1d 138548 science optional fastp_0.19.6+dfsg-1_armhf.deb Mon May 25 14:43:45 UTC 2020 I: diffoscope 145 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.WNWgfS9Iej/fastp_0.19.6+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.WNWgfS9Iej/fastp_0.19.6+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.WNWgfS9Iej/fastp_0.19.6+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.WNWgfS9Iej/b1/fastp_0.19.6+dfsg-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.WNWgfS9Iej/b2/fastp_0.19.6+dfsg-1_armhf.changes ## close_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 210.326s) 107.076s 970 calls readelf 93.757s 142 calls diff 6.724s 121 calls objdump 1.351s 18 calls xz 1.332s 2 calls objcopy 0.082s 8 calls cmp 0.002s 14 calls cmp (internal) ## compare_files (cumulative) (total time: 663.092s) 128.267s 1 call abc.DotChangesFile 127.856s 2 calls abc.DebFile 127.575s 4 calls abc.XzFile 126.274s 2 calls abc.DebDataTarFile 125.658s 2 calls abc.ElfFile 21.883s 8 calls diffoscope.comparators.elf.ElfCodeSection 4.630s 37 calls diffoscope.comparators.elf.ElfSection 0.592s 2 calls diffoscope.comparators.elf.ElfStringSection 0.247s 2 calls abc.TarFile 0.047s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.033s 1 call abc.TextFile 0.029s 2 calls abc.Md5sumsFile ## container_extract (total time: 1.498s) 1.354s 18 calls diffoscope.comparators.xz.XzContainer 0.073s 22 calls diffoscope.comparators.deb.DebContainer 0.058s 22 calls diffoscope.comparators.deb.DebTarContainer 0.013s 16 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.100s) 0.053s 12 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.024s 4 calls diffoscope.comparators.utils.archive.ArchiveMember 0.021s 2 calls diffoscope.comparators.debian.DebControlMember 0.001s 2 calls abc.Md5sumsFile 0.001s 37 calls diffoscope.comparators.elf.ElfSection 0.000s 1 call abc.DotChangesFile 0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 151.377s) 151.333s 2 calls outputs 0.045s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 22.631s) 12.858s 1 call html 6.574s 1 call text 3.199s 1 call json ## recognizes (total time: 2.285s) 0.671s 1270 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.558s 666 calls diffoscope.comparators.elf.ElfSection 0.554s 678 calls diffoscope.comparators.utils.archive.ArchiveMember 0.253s 168 calls diffoscope.comparators.debian.DebControlMember 0.118s 144 calls diffoscope.comparators.elf.ElfCodeSection 0.089s 10 calls diffoscope.comparators.binary.FilesystemFile 0.040s 36 calls diffoscope.comparators.elf.ElfStringSection 0.001s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 8 calls abc.DotChangesFile Mon May 25 14:46:21 UTC 2020 E: fastp failed to build reproducibly in buster on armhf. Mon May 25 14:48:09 UTC 2020 I: Submitting .buildinfo files to external archives: Mon May 25 14:48:09 UTC 2020 I: Submitting 8.0K b1/fastp_0.19.6+dfsg-1_armhf.buildinfo.asc Mon May 25 14:48:10 UTC 2020 I: Submitting 8.0K b2/fastp_0.19.6+dfsg-1_armhf.buildinfo.asc Mon May 25 14:48:11 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 25 14:48:11 UTC 2020 I: Done submitting .buildinfo files. Mon May 25 14:48:11 UTC 2020 I: Removing signed fastp_0.19.6+dfsg-1_armhf.buildinfo.asc files: removed './b1/fastp_0.19.6+dfsg-1_armhf.buildinfo.asc' removed './b2/fastp_0.19.6+dfsg-1_armhf.buildinfo.asc'