Mon Aug 31 01:32:50 UTC 2020 I: starting to build dwgsim/buster/armhf on jenkins on '2020-08-31 01:32' Mon Aug 31 01:32:50 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_14/8158/console.log Mon Aug 31 01:32:50 UTC 2020 I: Downloading source for buster/dwgsim=0.1.12-2 --2020-08-31 01:32:50-- http://deb.debian.org/debian/pool/main/d/dwgsim/dwgsim_0.1.12-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1968 (1.9K) Saving to: ‘dwgsim_0.1.12-2.dsc’ 0K . 100% 142M=0s 2020-08-31 01:32:50 (142 MB/s) - ‘dwgsim_0.1.12-2.dsc’ saved [1968/1968] Mon Aug 31 01:32:50 UTC 2020 I: dwgsim_0.1.12-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dwgsim Binary: dwgsim Architecture: any Version: 0.1.12-2 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray Homepage: https://github.com/nh13/DWGSIM/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/dwgsim Vcs-Git: https://salsa.debian.org/med-team/dwgsim.git Build-Depends: debhelper (>= 11~), samtools (>= 1.7-2), python-markdown, zlib1g-dev Package-List: dwgsim deb science optional arch=any Checksums-Sha1: fb6ead55e5c818b3dbe1fa0a74dc95ed9f6c40f3 2135973 dwgsim_0.1.12.orig.tar.gz ad669f5853363aacda2d7a1592d6f2eceb798eb9 5088 dwgsim_0.1.12-2.debian.tar.xz Checksums-Sha256: 230abcbc7e437dcfbb6a66a6639baa4e6d75d5186caa93fd3ee8743a824637e7 2135973 dwgsim_0.1.12.orig.tar.gz a339029a03d71cc25df5c410469d330c76fdffb121b066a7b97e6b6ab258c086 5088 dwgsim_0.1.12-2.debian.tar.xz Files: dd8ed5862ab1d451022f352fa015758e 2135973 dwgsim_0.1.12.orig.tar.gz 1a7613f79a922f59065485895f8d05b5 5088 dwgsim_0.1.12-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlw0kh8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHSTw/8DFJ8EJPHn9RKjA2OaIf8+i7dLHlohzO0 mXZQ3k1tMyTJqBR1l74iZG2PJcKFdIxSf6fYuayK9sKaPsk4LQ2IuJWAi6iS25hV B0H1GHIZEB30/uei5EcaPXDGKsbUNsTdqxOV0FbhM5jS69IuB4IZyOt8KKQl2fAj MUSg0DpLg0Oc1q1VBPv7NXV849z5272tvuE7IHHyjwQvdvr34xNnGAApnC9VflQR bItcb0Sg4zYbGHFatTjDcFAySHC+JJi25CURMFISD7kjpRm1AjJdsjZSkfgW38SW NND/exmGpPgYX4VSPvvCsXqXVl6NWpTuEZw+vOY4uTBDPUyyJokgBpwv2FoIDPjC MZb15Z37GndIJmU6pXQPbfvRw+SWdfWlzA67b3eYjibOwmdng088sJ5Q0ElN8Duf 9JiS7QL8QqiHwc4H7v53qrEwHJZPL6nDtqI0GRB6qJLq/nr825C1gLSA3oubkrQx 7src3TkeM7CHoBfoLKx/Yj//P5rVsdQAit368bl+drDqSqqwIqwgDMsy56sxH1HE L3TikwwdYUVZU/8c16J4JAm19RdZbJ/TpYgfRQ3d+bA9faoHNjkxgWtBswqowGpp NqxBjxNvwb6EX/4Gd4NHdiI9+WvX/pJg8BDctimevn8V/NPTO1hk31ON2is5Vs7I Nm07zYqU4U4= =7/AB -----END PGP SIGNATURE----- Mon Aug 31 01:32:50 UTC 2020 I: Checking whether the package is not for us Mon Aug 31 01:32:50 UTC 2020 I: Starting 1st build on remote node ff2b-armhf-rb.debian.net. Mon Aug 31 01:32:50 UTC 2020 I: Preparing to do remote build '1' on ff2b-armhf-rb.debian.net. Mon Aug 31 01:34:49 UTC 2020 I: Deleting $TMPDIR on ff2b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 30 13:32:58 -12 2020 I: pbuilder-time-stamp: 1598837578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dwgsim_0.1.12-2.dsc] I: copying [./dwgsim_0.1.12.orig.tar.gz] I: copying [./dwgsim_0.1.12-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 8 00:05:51 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dwgsim_0.1.12-2.dsc dpkg-source: info: extracting dwgsim in dwgsim-0.1.12 dpkg-source: info: unpacking dwgsim_0.1.12.orig.tar.gz dpkg-source: info: unpacking dwgsim_0.1.12-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Debian-ise-makefile.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8838/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='1672bd8bb9f549f6a11ac953c21997b1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8838' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.kllK2uisOq/pbuilderrc_q6Nj --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.kllK2uisOq/b1 --logfile b1/build.log dwgsim_0.1.12-2.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux ff2b 4.19.0-10-armmp-lpae #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 23 20:25 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/8838/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), samtools (>= 1.7-2), python-markdown, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on samtools (>= 1.7-2); however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on python-markdown; however: Package python-markdown is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhts2{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-markdown{a} python-minimal{a} python-pkg-resources{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} samtools{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl cwltool krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python-pygments python-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 26.6 MB of archives. After unpacking 87.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB] Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 25 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 26 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 28 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 29 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 30 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 32 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 34 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 39 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 45 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 46 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 48 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u2 [202 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB] Get: 59 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get: 60 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get: 61 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libcurl3-gnutls armhf 7.64.0-4+deb10u1 [295 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libdeflate0 armhf 1.2-1 [46.4 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libhts2 armhf 1.9-11 [261 kB] Get: 65 http://deb.debian.org/debian buster/main armhf python-pkg-resources all 40.8.0-1 [182 kB] Get: 66 http://deb.debian.org/debian buster/main armhf python-markdown all 3.0.1-3 [60.6 kB] Get: 67 http://deb.debian.org/debian buster/main armhf samtools armhf 1.9-4 [410 kB] Get: 68 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Fetched 26.6 MB in 3s (8273 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20397 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_armhf.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ... Setting up libnghttp2-14:armhf (1.36.0-2+deb10u1) ... Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up libdeflate0:armhf (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up libkrb5support0:armhf (1.17-3) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:armhf (1.17-3) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libssh2-1:armhf (1.8.0-2.1) ... Setting up libkrb5-3:armhf (1.17-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:armhf (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libldap-2.4-2:armhf (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-3) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:armhf (2.7.16-1) ... Setting up libcurl3-gnutls:armhf (7.64.0-4+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:armhf (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up libhts2:armhf (1.9-11) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-markdown (3.0.1-3) ... Setting up samtools (1.9-4) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dwgsim-0.1.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dwgsim dpkg-buildpackage: info: source version 0.1.12-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/dwgsim-0.1.12' rm -vfr gmon.out *.o a.out *.exe *.dSYM razip bgzip dwgsim *~ *.a *.so.* *.so *.dylib; make[1]: Leaving directory '/build/dwgsim-0.1.12' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/dwgsim-0.1.12' dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dwgsim-0.1.12' cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/dwgsim_opt.c -o src/dwgsim_opt.o In file included from src/dwgsim_opt.c:35: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined mut_get_ins_long_n(uint8_t *ins, uint32_t *n); ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined mut_get_ins_bytes(int32_t n); ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/mut.c -o src/mut.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/contigs.c -o src/contigs.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/regions_bed.c -o src/regions_bed.o cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/mut_txt.c -o src/mut_txt.o In file included from src/mut_txt.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined mut_get_ins_long_n(uint8_t *ins, uint32_t *n); ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined mut_get_ins_bytes(int32_t n); ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/mut_bed.c -o src/mut_bed.o In file included from src/mut_bed.c:33: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined mut_get_ins_long_n(uint8_t *ins, uint32_t *n); ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined mut_get_ins_bytes(int32_t n); ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/mut_vcf.c -o src/mut_vcf.o In file included from src/mut_vcf.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined mut_get_ins_long_n(uint8_t *ins, uint32_t *n); ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined mut_get_ins_bytes(int32_t n); ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/mut_input.c -o src/mut_input.o In file included from src/mut_input.c:36: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined mut_get_ins_long_n(uint8_t *ins, uint32_t *n); ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined mut_get_ins_bytes(int32_t n); ^~~~~~~~~~~~~~~~~ cc -c -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"0.1.12-2\" src/dwgsim.c -o src/dwgsim.o In file included from src/dwgsim.c:45: src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined mut_get_ins_long_n(uint8_t *ins, uint32_t *n); ^~~~~~~~~~~~~~~~~~ src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined mut_get_ins_bytes(int32_t n); ^~~~~~~~~~~~~~~~~ cc -g -O2 -ffile-prefix-map=/build/dwgsim-0.1.12=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -I. -Wl,-z,relro -Wl,-z,now -o dwgsim src/dwgsim_opt.o src/mut.o src/contigs.o src/regions_bed.o src/mut_txt.o src/mut_bed.o src/mut_vcf.o src/mut_input.o src/dwgsim.o -lm -lz -lpthread make[2]: Leaving directory '/build/dwgsim-0.1.12' markdown_py -f README.html README.md make[1]: Leaving directory '/build/dwgsim-0.1.12' debian/rules override_dh_auto_test make[1]: Entering directory '/build/dwgsim-0.1.12' ln -s /usr/share/doc/samtools/examples samtools dh_auto_test make -j3 test make[2]: Entering directory '/build/dwgsim-0.1.12' if [ -d tmp ]; then rm -r tmp; fi /bin/bash testdata/test.sh /build/dwgsim-0.1.12/testdata /build/dwgsim-0.1.12 /build/dwgsim-0.1.12 [dwgsim_core] seq1 length: 1575 [dwgsim_core] seq2 length: 1584 [dwgsim_core] 2 sequences, total length: 3159 [dwgsim_core] Currently on: 0 [dwgsim_core] 0 [dwgsim_core] 4986 [dwgsim_core] 10000 [dwgsim_core] Complete! make[2]: Leaving directory '/build/dwgsim-0.1.12' make[1]: Leaving directory '/build/dwgsim-0.1.12' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/dwgsim/usr/bin/dwgsim was not linked against libz.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dwgsim' in '../dwgsim_0.1.12-2_armhf.deb'. dpkg-deb: building package 'dwgsim-dbgsym' in '../dwgsim-dbgsym_0.1.12-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dwgsim_0.1.12-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8838 and its subdirectories I: Current time: Sun Aug 30 13:34:44 -12 2020 I: pbuilder-time-stamp: 1598837684 Mon Aug 31 01:34:51 UTC 2020 I: 1st build successful. Starting 2nd build on remote node p64b-armhf-rb.debian.net. Mon Aug 31 01:34:51 UTC 2020 I: Preparing to do remote build '2' on p64b-armhf-rb.debian.net. Mon Aug 31 01:38:46 UTC 2020 I: Deleting $TMPDIR on p64b-armhf-rb.debian.net. Mon Aug 31 01:38:49 UTC 2020 I: dwgsim_0.1.12-2_armhf.changes: Format: 1.8 Date: Tue, 08 Jan 2019 13:03:23 +0100 Source: dwgsim Binary: dwgsim dwgsim-dbgsym Architecture: armhf Version: 0.1.12-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dwgsim - short sequencing read simulator Changes: dwgsim (0.1.12-2) unstable; urgency=medium . * Team upload. * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target Checksums-Sha1: cfa8f4f74c6baf93453d26c3dae2de808c1c2e98 83992 dwgsim-dbgsym_0.1.12-2_armhf.deb 40b02ae18f45cec813078d9463816aac52d7fb84 5844 dwgsim_0.1.12-2_armhf.buildinfo 5b93fbba4b3a0154cf9993c9e4bb389ef54c068f 38772 dwgsim_0.1.12-2_armhf.deb Checksums-Sha256: a824c923ae7d9d7dbe376d52697fc8b8ea39571cece86c0bf40781a314c180d5 83992 dwgsim-dbgsym_0.1.12-2_armhf.deb cf56ef466cd8201542a4a343bd400fc938bb7587046035a82a37547259c4e8ee 5844 dwgsim_0.1.12-2_armhf.buildinfo e02890e29b8d59d62305d2bd6da5d426619df9821f516fe40270526246af3899 38772 dwgsim_0.1.12-2_armhf.deb Files: a1f00d1c4c4e855fdcb1458c07b75873 83992 debug optional dwgsim-dbgsym_0.1.12-2_armhf.deb b7d11993b56dcb8d941b2afa30e07c5c 5844 science optional dwgsim_0.1.12-2_armhf.buildinfo ed6ac9d0554c8ad07a2e4dbe5ac0aeea 38772 science optional dwgsim_0.1.12-2_armhf.deb Mon Aug 31 01:39:03 UTC 2020 I: diffoscope 158 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.kllK2uisOq/dwgsim_0.1.12-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.kllK2uisOq/dwgsim_0.1.12-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.kllK2uisOq/dwgsim_0.1.12-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.kllK2uisOq/b1/dwgsim_0.1.12-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.kllK2uisOq/b2/dwgsim_0.1.12-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.814s) 0.814s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Aug 31 01:39:39 UTC 2020 I: diffoscope 158 found no differences in the changes files, and a .buildinfo file also exists. Mon Aug 31 01:39:39 UTC 2020 I: dwgsim from buster built successfully and reproducibly on armhf. Mon Aug 31 01:39:41 UTC 2020 I: Submitting .buildinfo files to external archives: Mon Aug 31 01:39:41 UTC 2020 I: Submitting 8.0K b1/dwgsim_0.1.12-2_armhf.buildinfo.asc Mon Aug 31 01:39:42 UTC 2020 I: Submitting 8.0K b2/dwgsim_0.1.12-2_armhf.buildinfo.asc Mon Aug 31 01:39:42 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 31 01:39:42 UTC 2020 I: Done submitting .buildinfo files. Mon Aug 31 01:39:42 UTC 2020 I: Removing signed dwgsim_0.1.12-2_armhf.buildinfo.asc files: removed './b1/dwgsim_0.1.12-2_armhf.buildinfo.asc' removed './b2/dwgsim_0.1.12-2_armhf.buildinfo.asc'