Mon May 25 17:59:36 UTC 2020 I: starting to build dialign/buster/armhf on jenkins on '2020-05-25 17:59' Mon May 25 17:59:36 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_48/1752/console.log Mon May 25 17:59:36 UTC 2020 I: Downloading source for buster/dialign=2.2.1-10 --2020-05-25 17:59:36-- http://deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-10.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1977 (1.9K) Saving to: ‘dialign_2.2.1-10.dsc’ 0K . 100% 175M=0s 2020-05-25 17:59:36 (175 MB/s) - ‘dialign_2.2.1-10.dsc’ saved [1977/1977] Mon May 25 17:59:36 UTC 2020 I: dialign_2.2.1-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dialign Binary: dialign Architecture: any Version: 2.2.1-10 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://dialign.gobics.de/ Standards-Version: 4.2.0 Vcs-Browser: https://salsa.debian.org/med-team/dialign Vcs-Git: https://salsa.debian.org/med-team/dialign.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: dialign deb science optional arch=any Checksums-Sha1: 2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz 3408adbc198581b214888c9b02293a2482640255 12164 dialign_2.2.1-10.debian.tar.xz Checksums-Sha256: 046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz e0022710404dccf0fc9cc8791c640ecab314e58e1975f3a78b44abc44c279d00 12164 dialign_2.2.1-10.debian.tar.xz Files: 3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz d00b6b141a79c7773516b167d73ac68e 12164 dialign_2.2.1-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt5SGcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0Yg//V76jFLCwmdKcQ+n/N/nIWLHBIO/IhZUm ewazFaEn4nUv9aT1hwDGdHWOB+LEXxHAQ3H3e7w3DjiPKODnEgXDpAuQPlrDMqKa 0q/h6ekKyhlzNAD//L3f3WOZQ8truXyGqFUDxGG5HJPo3yT8oYU2ebSE/faTpQAQ /f8Bbw21avyle4QSwDOzHc8de6ID+4js64SCC4lP1CTGx+L5TUm7e05KqKBWvX/U 9QLVOjV6x0YNOq/qMaxGDRWhzrQ5hfvQzEbjYcTBSl4RVEr/NXzoIRFwX16WJpwo a2a5LxXi6gM87GfkiE5nlhb2o0oPE/xruOOXb/T/tZk7ya1hEA50lwYzYqhz/fxC 2dVOLhDTKdy/BBAhFO+8esSJenypI8qZmEYS85Z7DcTBL8ximPPSmn3zyCkqsHt9 8BOp4jn/ZKUQB4Fw20szwKuyDM2LbKnD8qAv9JG6SU5us1B/pJh/0aR2TOGwG8iS YtYzK9BKniUS0GumOFYZzFy0KwmXCVZUybbO/uX2hNMhW8/BI3h25nOb302XITCm SQxO8i/Xm78PQs5f53pJ55LZc7e/kBMxlTF1TMhNshCwYb88FQXsfSi8CwOmNYPd s3YETQOmQQ0GhT1vKdf6Lh56Q57F37tbemyxiTiRGH40GRrv9vReel5RNa9S1Pq1 bAiceV5YL9U= =wQ9+ -----END PGP SIGNATURE----- Mon May 25 17:59:36 UTC 2020 I: Checking whether the package is not for us Mon May 25 17:59:36 UTC 2020 I: Starting 1st build on remote node jtx1a-armhf-rb.debian.net. Mon May 25 17:59:37 UTC 2020 I: Preparing to do remote build '1' on jtx1a-armhf-rb.debian.net. Mon May 25 18:01:04 UTC 2020 I: Deleting $TMPDIR on jtx1a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 25 05:59:43 -12 2020 I: pbuilder-time-stamp: 1590429583 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign_2.2.1-10.dsc] I: copying [./dialign_2.2.1.orig.tar.gz] I: copying [./dialign_2.2.1-10.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 18 22:37:27 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dialign_2.2.1-10.dsc dpkg-source: info: extracting dialign in dialign-2.2.1 dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz dpkg-source: info: unpacking dialign_2.2.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch dpkg-source: info: applying 30_local_doc.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_excess_argument.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Fetched 18.2 MB in 2s (11.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dialign dpkg-buildpackage: info: source version 2.2.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/dialign-2.2.1' find src/ -name '*.o' -delete dh_clean src/dialign2-2 make[1]: Leaving directory '/build/dialign-2.2.1' debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/dialign-2.2.1' ## CFLAGS = -c -I-DCONS -O2 dh_auto_build --sourcedirectory=src cd src && make -j3 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dialign-2.2.1/src' gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS dialign.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS functions.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS para.c dialign.c:261:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char **argv) ^~~~ dialign.c: In function 'main': dialign.c:392:4: warning: implicit declaration of function 'regex_parse' [-Wimplicit-function-declaration] regex_parse( mot_regex ) ; ^~~~~~~~~~~ functions.c:856:1: warning: return type defaults to 'int' [-Wimplicit-int] wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, ^~~~~~~~~~~~~~ functions.c:885:1: warning: return type defaults to 'int' [-Wimplicit-int] plot_calc( int num , int e_len, float *w_count, float *pl, ^~~~~~~~~ dialign.c:487:5: warning: implicit declaration of function 'seq_parse' [-Wimplicit-function-declaration] seq_parse( mot_regex ) ; ^~~~~~~~~ dialign.c:619:3: warning: implicit declaration of function 'exclude_frg_read' [-Wimplicit-function-declaration] exclude_frg_read ( input_name , exclude_list ) ; ^~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS output.c output.c:64:9: warning: type defaults to 'int' in declaration of 'plot_calc' [-Wimplicit-int] extern plot_calc( int num , int e_len, float *w_count, float *pl, ^~~~~~~~~ output.c:66:9: warning: type defaults to 'int' in declaration of 'wgt_type_count' [-Wimplicit-int] extern wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, ^~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS wgt.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS anchor.c anchor.c: In function 'multi_anc_read': anchor.c:118:5: warning: implicit declaration of function 'erreur'; did you mean 'perror'? [-Wimplicit-function-declaration] erreur("\n\n cannot find file with anchor points \n\n\n"); ^~~~~~ perror anchor.c:131:10: warning: implicit declaration of function 'word_count' [-Wimplicit-function-declaration] if( word_count( line ) == 6 ) { ^~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS regex.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS input.c regex.c:154:1: warning: return type defaults to 'int' [-Wimplicit-int] seq_parse( char *mot_regex ) { ^~~~~~~~~ input.c: In function 'exclude_frg_read': input.c:65:5: warning: implicit declaration of function 'erreur'; did you mean 'perror'? [-Wimplicit-function-declaration] erreur("\n\n cannot find file with excluded fragments \n\n\n"); ^~~~~~ perror gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS frag_chain.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/dialign-2.2.1/src' make[1]: Leaving directory '/build/dialign-2.2.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dialign' in '../dialign_2.2.1-10_armhf.deb'. dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-10_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dialign_2.2.1-10_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/747 and its subdirectories I: Current time: Mon May 25 06:00:59 -12 2020 I: pbuilder-time-stamp: 1590429659 Mon May 25 18:01:06 UTC 2020 I: 1st build successful. Starting 2nd build on remote node odxu4a-armhf-rb.debian.net. Mon May 25 18:01:06 UTC 2020 I: Preparing to do remote build '2' on odxu4a-armhf-rb.debian.net. Mon May 25 18:02:24 UTC 2020 I: Deleting $TMPDIR on odxu4a-armhf-rb.debian.net. Mon May 25 18:02:26 UTC 2020 I: dialign_2.2.1-10_armhf.changes: Format: 1.8 Date: Sun, 19 Aug 2018 12:26:16 +0200 Source: dialign Binary: dialign dialign-dbgsym Architecture: armhf Version: 2.2.1-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dialign - Segment-based multiple sequence alignment Changes: dialign (2.2.1-10) unstable; urgency=medium . [ Steffen Moeller ] * Added references to registries RRID (SCR_008417), OMICtools (OMIC_00973) and bio.tools (Dialign) . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.0 Checksums-Sha1: 5d7b8f546ac7bf0ca0d57fb1dd764ea0aea24191 69616 dialign-dbgsym_2.2.1-10_armhf.deb 200bd5e42f9dd045c5c74f46a5484883ddf68ff2 4473 dialign_2.2.1-10_armhf.buildinfo 442a057457022026fac0567094fb86e2b99f44aa 136412 dialign_2.2.1-10_armhf.deb Checksums-Sha256: 3cd3a6535a49f0d9a0b9e08f8c654c82ba2cf6bc5098483fc3cbe67bf305ea72 69616 dialign-dbgsym_2.2.1-10_armhf.deb 61e8f9bf1d1fb1e66728fb8c19e922a73d9e2923d5f0c5cde427cdc6ff534a93 4473 dialign_2.2.1-10_armhf.buildinfo 5e5e847890c4ba9ff8d0dc8f69c3b805afe34cc85cc1477af250072a3fbee7d3 136412 dialign_2.2.1-10_armhf.deb Files: aec0d241ef7650e93888854da87d4087 69616 debug optional dialign-dbgsym_2.2.1-10_armhf.deb 4c14dd0b8d4d1f0a20c011243ef51599 4473 science optional dialign_2.2.1-10_armhf.buildinfo 4c88669a1139a67aa0d33823160b8e87 136412 science optional dialign_2.2.1-10_armhf.deb Mon May 25 18:02:28 UTC 2020 I: diffoscope 145 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/dialign_2.2.1-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/dialign_2.2.1-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/dialign_2.2.1-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/b1/dialign_2.2.1-10_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.IlB7VCAtp9/b2/dialign_2.2.1-10_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.760s) 0.760s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.196s) 0.196s 10 calls diffoscope.comparators.binary.FilesystemFile Mon May 25 18:02:31 UTC 2020 I: diffoscope 145 found no differences in the changes files, and a .buildinfo file also exists. Mon May 25 18:02:31 UTC 2020 I: dialign from buster built successfully and reproducibly on armhf. Mon May 25 18:02:32 UTC 2020 I: Submitting .buildinfo files to external archives: Mon May 25 18:02:32 UTC 2020 I: Submitting 8.0K b1/dialign_2.2.1-10_armhf.buildinfo.asc Mon May 25 18:02:35 UTC 2020 I: Submitting 8.0K b2/dialign_2.2.1-10_armhf.buildinfo.asc Mon May 25 18:02:36 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 25 18:02:36 UTC 2020 I: Done submitting .buildinfo files. Mon May 25 18:02:36 UTC 2020 I: Removing signed dialign_2.2.1-10_armhf.buildinfo.asc files: removed './b1/dialign_2.2.1-10_armhf.buildinfo.asc' removed './b2/dialign_2.2.1-10_armhf.buildinfo.asc'