Tue Sep 1 17:39:50 UTC 2020 I: starting to build dialign-t/buster/armhf on jenkins on '2020-09-01 17:39' Tue Sep 1 17:39:50 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_19/2115/console.log Tue Sep 1 17:39:50 UTC 2020 I: Downloading source for buster/dialign-t=1.0.2-12 --2020-09-01 17:39:51-- http://deb.debian.org/debian/pool/main/d/dialign-t/dialign-t_1.0.2-12.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2075 (2.0K) Saving to: ‘dialign-t_1.0.2-12.dsc’ 0K .. 100% 15.5M=0s 2020-09-01 17:39:51 (15.5 MB/s) - ‘dialign-t_1.0.2-12.dsc’ saved [2075/2075] Tue Sep 1 17:39:51 UTC 2020 I: dialign-t_1.0.2-12.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dialign-t Binary: dialign-tx, dialign-tx-data Architecture: any all Version: 1.0.2-12 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://dialign-tx.gobics.de/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/dialign-t Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: dialign-tx deb science optional arch=any dialign-tx-data deb science optional arch=all Checksums-Sha1: 4d4e50070f019b88078105ec21f22b1005a010af 1765296 dialign-t_1.0.2.orig.tar.gz 09afc5f55bc83d412c58c6797fc7d81e1e7ac080 18244 dialign-t_1.0.2-12.debian.tar.xz Checksums-Sha256: fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f 1765296 dialign-t_1.0.2.orig.tar.gz ae63a8d0040cec45ea728f791eb3027c571697f305ea5aaa23507f4378087158 18244 dialign-t_1.0.2-12.debian.tar.xz Files: 8ccfb1d91136157324d1e513f184ca29 1765296 dialign-t_1.0.2.orig.tar.gz 986da5eca9280d12530f18bf5c2d96f1 18244 dialign-t_1.0.2-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvVjDURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGM7w//eCohRw1I7uuxV1TIaN72xgw2sbIAFH/1 WvW7B8Z0Fih06BdKOSQxh4qlFYbbROBdVG3GEbMO6AeaLW1E2qgB5dchZ/oNDKEy +87OUaHHfznmI5iW1tPFeEIEH08xRDOGqqnk6DE6Y/2P+4ksv8MHBuuPsItxUICZ DNWmaYWlTLpW2WzDSFsAeodKPN3HhFL5CqzFJH6akjfCfulBPBBgXKjDnLS+J1Z4 V7c1d5pcIGKI0QMdlxUIadsVTmRU++8euzWfdYa7JOBkDi16Qybsm3NZh5FIVITz guLoEnfO6iGPnniOnGGoetpn2ebYCazpFAvngEte2HQkEt02PEeoO6O992uJpSYm 3mtXdAktNm/S9MNxdWmOWz+D+R/3Uu3LPzwfA7Pum96Eo+uVsfzf1ulCBaE6CuSW 4nkk0dRhKoEnMxbqvnEA9OnfdzIIn1HTrNdEb/4YKar66iB7Pi2V9pjavF8zt/L+ VfEvgAw9GdFZQxncC+Pwq1V80/DWmIecoDwoBI2K8j1QYfl5/pBo0bebB84CdQ65 dQlI3ZVBW8f4YjRzHpJV7pVPZ6gwXo6OaO8WuyyfwcFkdyRMLYmuJ8fmljm4jybb vjZjC0umRIN7hio+OiYzm54MrHr+raw73w3+oxH1yWsQn1VwJnMOc2Hhp7bn+HWZ lIMNymZmaU4= =ayQQ -----END PGP SIGNATURE----- Tue Sep 1 17:39:51 UTC 2020 I: Checking whether the package is not for us Tue Sep 1 17:39:51 UTC 2020 I: Starting 1st build on remote node jtk1b-armhf-rb.debian.net. Tue Sep 1 17:39:51 UTC 2020 I: Preparing to do remote build '1' on jtk1b-armhf-rb.debian.net. Tue Sep 1 17:43:55 UTC 2020 I: Deleting $TMPDIR on jtk1b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 1 05:40:02 -12 2020 I: pbuilder-time-stamp: 1598982002 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign-t_1.0.2-12.dsc] I: copying [./dialign-t_1.0.2.orig.tar.gz] I: copying [./dialign-t_1.0.2-12.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 27 22:15:17 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dialign-t_1.0.2-12.dsc dpkg-source: info: extracting dialign-t in dialign-t-1.0.2 dpkg-source: info: unpacking dialign-t_1.0.2.orig.tar.gz dpkg-source: info: unpacking dialign-t_1.0.2-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying prevent_enforcing_arch.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying consistent_declarations.patch dpkg-source: info: applying clang-ftbfs.diff dpkg-source: info: applying spelling.patch dpkg-source: info: applying mayhem.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15652/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='6d6e6a68566048268e927325f23df7d8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15652' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Z91y3AvV0W/pbuilderrc_E0dR --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Z91y3AvV0W/b1 --logfile b1/build.log dialign-t_1.0.2-12.dsc' SUDO_GID='114' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux jtk1b 4.19.0-10-armmp-lpae #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 30 20:28 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/15652/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Fetched 18.2 MB in 2s (9282 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source cd source && make -j3 clean make[1]: Entering directory '/build/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/dialign-t-1.0.2/source' dh_autoreconf_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_clean -O--sourcedirectory=/build/dialign-t-1.0.2/source debian/rules build dh build --sourcedirectory=/build/dialign-t-1.0.2/source dh_update_autotools_config -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_autoreconf -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/dialign-t-1.0.2/source cd source && make -j3 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dialign-t-1.0.2/source' gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o museq.o museq.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o parameters.o parameters.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o io.o io.c museq.c: In function 'main': museq.c:168:2: warning: implicit declaration of function 'free_diag'; did you mean 'free_diag_col'? [-Wimplicit-function-declaration] free_diag(adcol.diags[i]); ^~~~~~~~~ free_diag_col museq.c:278:27: warning: implicit declaration of function 'free_alignment' [-Wimplicit-function-declaration] if(! para->FAST_MODE) free_alignment(algn); ^~~~~~~~~~~~~~ io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { ~~^ ~~~ %i io.c:535:27: warning: format '%li' expects argument of type 'long int *', but argument 4 has type 'int *' [-Wformat=] while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { ~~^ ~~~ %i io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { ~~^ ~~~~ %i io.c:535:35: warning: format '%li' expects argument of type 'long int *', but argument 6 has type 'int *' [-Wformat=] while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { ~~^ ~~~~ %i io.c:535:39: warning: format '%li' expects argument of type 'long int *', but argument 7 has type 'int *' [-Wformat=] while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { ~~^ ~~~~ %i io.c: In function 'read_scr_matrix': io.c:270:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf( fp, "%i", &is); ^~~~~~~~~~~~~~~~~~~~~~ io.c:282:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%s\n", rline); ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'read_diag_prob_dist': io.c:371:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o diag.o diag.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o alig.o alig.c diag.c:1456:3: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); ^~~~~~~~~~~~~~~~ alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, ^~~~~~~~~~~~~~ alig.c:13:20: warning: inline function 'calc_weight' declared but never defined extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, ^~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o assemble.o assemble.c assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); ^~~~~~~~ assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, ^~~~~~~~~~~~~~~~~ assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, ^~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o prob.o prob.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o orf.o orf.c gcc -g -O2 -ffile-prefix-map=/build/dialign-t-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -c -o translate.o translate.c rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm -Wl,-z,relro -Wl,-z,now mv museq dialign-tx make[1]: Leaving directory '/build/dialign-t-1.0.2/source' dh_auto_test -O--sourcedirectory=/build/dialign-t-1.0.2/source create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --sourcedirectory=/build/dialign-t-1.0.2/source dh_testroot -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_prep -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_auto_install -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_install -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installdocs -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installchangelogs -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installman -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installinit -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_perl -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_link -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_strip_nondeterminism -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_compress -O--sourcedirectory=/build/dialign-t-1.0.2/source debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/dialign-t-1.0.2' dh_fixperms chmod 644 /build/dialign-t-1.0.2/debian/dialign-tx-data/usr/share/dialign-tx/* make[1]: Leaving directory '/build/dialign-t-1.0.2' dh_fixperms -O--sourcedirectory=/build/dialign-t-1.0.2/source -Ndialign-tx-data dh_missing -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_strip -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_makeshlibs -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_shlibdeps -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_installdeb -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_gencontrol -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/dialign-t-1.0.2/source dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-12_armhf.deb'. dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-12_armhf.deb'. dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-12_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dialign-t_1.0.2-12_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15652 and its subdirectories I: Current time: Tue Sep 1 05:43:36 -12 2020 I: pbuilder-time-stamp: 1598982216 Tue Sep 1 17:43:59 UTC 2020 I: 1st build successful. Starting 2nd build on remote node jtx1c-armhf-rb.debian.net. Tue Sep 1 17:43:59 UTC 2020 I: Preparing to do remote build '2' on jtx1c-armhf-rb.debian.net. Tue Sep 1 17:46:19 UTC 2020 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. Tue Sep 1 17:46:22 UTC 2020 I: dialign-t_1.0.2-12_armhf.changes: Format: 1.8 Date: Sun, 28 Oct 2018 11:09:46 +0100 Source: dialign-t Binary: dialign-tx dialign-tx-data dialign-tx-dbgsym Architecture: all armhf Version: 1.0.2-12 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dialign-tx - Segment-based multiple sequence alignment dialign-tx-data - Segment-based multiple sequence alignment (data files) Changes: dialign-t (1.0.2-12) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. * Use secure copyright file specification URI. . [ Andreas Tille ] * Verified d/watch * Drop redundant --parallel option * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright Checksums-Sha1: 8b3929cc48e7f0f295dcd0ab3bddb94469a07c96 4818 dialign-t_1.0.2-12_armhf.buildinfo 2fad671792da58c9728c19209557d5d057f2bdc2 869456 dialign-tx-data_1.0.2-12_all.deb accd93f592ecf83e5bcaa076ff906124d10a4570 143556 dialign-tx-dbgsym_1.0.2-12_armhf.deb 8218f8b25028fb9321c1315e9ff7a1373a89e5a1 61900 dialign-tx_1.0.2-12_armhf.deb Checksums-Sha256: 46fab83b0b1f0e7937c7fb2969c71b8300093176b3908994cd1bf6525a65d872 4818 dialign-t_1.0.2-12_armhf.buildinfo e64ba493e82a2f21ebb218a828ffb73374e074eb47779fc854c67ef365f83dfb 869456 dialign-tx-data_1.0.2-12_all.deb 01f3597078916dfad543eb429ff81df43e13b8e8d34caf5d10b995cc19cc3590 143556 dialign-tx-dbgsym_1.0.2-12_armhf.deb 7f754f009dd2738e906f787b8e035842c3e9f9a7bf86fcc35e2ec58002786d11 61900 dialign-tx_1.0.2-12_armhf.deb Files: f5f4eebf9c803274095fc0d78dafde14 4818 science optional dialign-t_1.0.2-12_armhf.buildinfo 0792056d0f6b858c50b2137bedf97ae4 869456 science optional dialign-tx-data_1.0.2-12_all.deb 3afb3a90d007b6f92c098f061016d825 143556 debug optional dialign-tx-dbgsym_1.0.2-12_armhf.deb ddb25e6870fd56f30ae4302ad53f0eb3 61900 science optional dialign-tx_1.0.2-12_armhf.deb Tue Sep 1 17:46:34 UTC 2020 I: diffoscope 158 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Z91y3AvV0W/dialign-t_1.0.2-12.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Z91y3AvV0W/dialign-t_1.0.2-12.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Z91y3AvV0W/dialign-t_1.0.2-12.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Z91y3AvV0W/b1/dialign-t_1.0.2-12_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.Z91y3AvV0W/b2/dialign-t_1.0.2-12_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.206s) 0.206s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Sep 1 17:46:56 UTC 2020 I: diffoscope 158 found no differences in the changes files, and a .buildinfo file also exists. Tue Sep 1 17:46:56 UTC 2020 I: dialign-t from buster built successfully and reproducibly on armhf. Tue Sep 1 17:46:57 UTC 2020 I: Submitting .buildinfo files to external archives: Tue Sep 1 17:46:57 UTC 2020 I: Submitting 8.0K b1/dialign-t_1.0.2-12_armhf.buildinfo.asc Tue Sep 1 17:46:58 UTC 2020 I: Submitting 8.0K b2/dialign-t_1.0.2-12_armhf.buildinfo.asc Tue Sep 1 17:46:59 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Sep 1 17:46:59 UTC 2020 I: Done submitting .buildinfo files. Tue Sep 1 17:46:59 UTC 2020 I: Removing signed dialign-t_1.0.2-12_armhf.buildinfo.asc files: removed './b1/dialign-t_1.0.2-12_armhf.buildinfo.asc' removed './b2/dialign-t_1.0.2-12_armhf.buildinfo.asc'