Thu Jul 16 02:49:38 UTC 2020 I: starting to build debian-med/buster/armhf on jenkins on '2020-07-16 02:49' Thu Jul 16 02:49:38 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_27/651/console.log Thu Jul 16 02:49:38 UTC 2020 I: Downloading source for buster/debian-med=3.3 --2020-07-16 02:49:38-- http://deb.debian.org/debian/pool/main/d/debian-med/debian-med_3.3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2910 (2.8K) Saving to: ‘debian-med_3.3.dsc’ 0K .. 100% 155K=0.02s 2020-07-16 02:49:38 (155 KB/s) - ‘debian-med_3.3.dsc’ saved [2910/2910] Thu Jul 16 02:49:38 UTC 2020 I: debian-med_3.3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (native) Source: debian-med Binary: med-tasks, med-config, med-all, med-bio, med-bio-dev, med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-statistics, med-tools, med-typesetting Architecture: all Version: 3.3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/blends-team/med Vcs-Git: https://salsa.debian.org/blends-team/med.git Build-Depends-Indep: blends-dev (>= 0.7.2~), debhelper (>= 12~) Package-List: med-all deb metapackages optional arch=all med-bio deb metapackages optional arch=all med-bio-dev deb metapackages optional arch=all med-cloud deb metapackages optional arch=all med-config deb misc optional arch=all med-data deb metapackages optional arch=all med-dental deb metapackages optional arch=all med-epi deb metapackages optional arch=all med-his deb metapackages optional arch=all med-imaging deb metapackages optional arch=all med-imaging-dev deb metapackages optional arch=all med-laboratory deb metapackages optional arch=all med-oncology deb metapackages optional arch=all med-pharmacy deb metapackages optional arch=all med-physics deb metapackages optional arch=all med-practice deb metapackages optional arch=all med-psychology deb metapackages optional arch=all med-research deb metapackages optional arch=all med-statistics deb metapackages optional arch=all med-tasks deb misc optional arch=all med-tools deb metapackages optional arch=all med-typesetting deb metapackages optional arch=all Checksums-Sha1: 9e0cae2087c9411184a9f30e8659a901bdbf2e65 103336 debian-med_3.3.tar.xz Checksums-Sha256: 8deaa63f5fda7a3f4f2d2dc51e44896ed0f371848de96e8dcb07c514ea3f341e 103336 debian-med_3.3.tar.xz Files: f94933bb026a1a160f21f17ab86f239d 103336 debian-med_3.3.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl0BDssRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHeSA//UQmpj74en4SY/X8v+CAE57MIUqHsnxeQ KATtIpE5ah/KZ9ZVnuDDqk1swXvHvmZL5ckkfJ1BGBzxwCobXlN2ADlMuhZm4cMX vNDfjS4sEn30k7sQ5VBBsdD870v+KT+1Gbnm1ZvbJYbmgzTGbDCSUR6cahNY05Sr fP9R65Tmuu/Ugljn+36zZjbjib9CvHbZTeI+Pl6fcWGuCUsYK98ySSiZ9EVlPYws ZhLdJP2oga5PKcXd6ztr4XjB/2OGRLSDDKJPl5B7EJM+99nlyd/PzQ91vyaP+jTH enNXwJ1UDDugufe9mRmnARqwo4ux1tFSrq3tZUs0G/kuplMknmIn1tRI/Nr0836A qZ56XWTKYSg5Z5sf/+L4BtMXRuEeicI6vkWEQf5MnZDIYYXi+tGZjyrPKHbA/X5V eu8mL01GdWwnDa4TBVC9PJ6UkT/r49DZptTH+YJqz1BrJQaNVUZW+zjgzWvsE+K0 p9AOgn5FxfKn0dPGYRuOImC8zlImrZ37tymyIgyl3HpMm3gUgEU9+dSr87/4psA/ zpAfBrY5JV2V0hpQ4PWqCzsNLYvBX0nV05fIc0hZY+uGRpJRvZD206QWvBr5BTZt J5lhZ/pHk6IFu2iJkMWfHqfo83PCPxyq1ejvE66ARpZSQGLVFRmhSDvcn3fC7XPc CXdCGkDHhWg= =+B6F -----END PGP SIGNATURE----- Thu Jul 16 02:49:38 UTC 2020 I: Checking whether the package is not for us Thu Jul 16 02:49:38 UTC 2020 I: Starting 1st build on remote node odu3a-armhf-rb.debian.net. Thu Jul 16 02:49:38 UTC 2020 I: Preparing to do remote build '1' on odu3a-armhf-rb.debian.net. Thu Jul 16 02:53:10 UTC 2020 I: Deleting $TMPDIR on odu3a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 15 14:49:47 -12 2020 I: pbuilder-time-stamp: 1594867787 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [debian-med_3.3.dsc] I: copying [./debian-med_3.3.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jun 12 02:40:11 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./debian-med_3.3.dsc dpkg-source: info: extracting debian-med in debian-med-3.3 dpkg-source: info: unpacking debian-med_3.3.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10295/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='1373c97cec514cdd993abdb4e07f30d4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10295' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UWst6YOqp9/pbuilderrc_gZHO --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UWst6YOqp9/b1 --logfile b1/build.log debian-med_3.3.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux odu3a 4.19.0-9-armmp #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 13 20:27 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/10295/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: blends-dev (>= 0.7.2~), debhelper (>= 12~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on blends-dev (>= 0.7.2~); however: Package blends-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blends-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libapt-inst2.0{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python-apt-common{a} python3{a} python3-apt{a} python3-blends{a} python3-chardet{a} python3-debian{a} python3-minimal{a} python3-pkg-resources{a} python3-six{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl iso-codes javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lsb-release lynx python3-psycopg2 shared-mime-info wget xdg-user-dirs 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 25.4 MB of archives. After unpacking 91.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libpython3.7-minimal armhf 3.7.3-2+deb10u1 [582 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python3.7-minimal armhf 3.7.3-2+deb10u1 [1465 kB] Get: 11 http://deb.debian.org/debian buster/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libmpdec2 armhf 2.4.2-2 [69.3 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython3.7-stdlib armhf 3.7.3-2+deb10u1 [1660 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python3.7 armhf 3.7.3-2+deb10u1 [330 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main armhf python3 armhf 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 23 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 24 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 26 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 27 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 28 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 29 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 30 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 32 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 35 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 37 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 43 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 44 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 45 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 46 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 47 http://deb.debian.org/debian buster/main armhf libapt-inst2.0 armhf 1.8.2 [200 kB] Get: 48 http://deb.debian.org/debian buster/main armhf python-apt-common all 1.8.4.1 [95.7 kB] Get: 49 http://deb.debian.org/debian buster/main armhf python3-apt armhf 1.8.4.1 [168 kB] Get: 50 http://deb.debian.org/debian buster/main armhf python3-pkg-resources all 40.8.0-1 [153 kB] Get: 51 http://deb.debian.org/debian buster/main armhf python3-chardet all 3.0.4-3 [80.5 kB] Get: 52 http://deb.debian.org/debian buster/main armhf python3-six all 1.12.0-1 [15.7 kB] Get: 53 http://deb.debian.org/debian buster/main armhf python3-debian all 0.1.35 [78.8 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 57 http://deb.debian.org/debian buster/main armhf python3-blends all 0.7.2 [36.2 kB] Get: 58 http://deb.debian.org/debian buster/main armhf blends-dev all 0.7.2 [32.7 kB] Fetched 25.4 MB in 12s (2066 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../2-libuchardet0_0.0.6-3_armhf.deb ... 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Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:armhf (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:armhf (3.7.3-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:armhf (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-apt (1.8.4.1) ... Setting up po-debconf (1.0.21) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-debian (0.1.35) ... Setting up python3-blends (0.7.2) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Setting up blends-dev (0.7.2) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/debian-med-3.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package debian-med dpkg-buildpackage: info: source version 3.3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/debian-med-3.3' # call make clean instead of distclean make clean make[2]: Entering directory '/build/debian-med-3.3' rm -rf tmp rm -f tasks/*~ rm -rf tasksel rm -f packages.txt by_vote packages-sorted.txt rm -f debian/*-config.postinst debian/*-config.preinst debian/*-config.postrm debian/*-config.prerm make[2]: Leaving directory '/build/debian-med-3.3' make[1]: Leaving directory '/build/debian-med-3.3' debian/rules override_dh_clean make[1]: Entering directory '/build/debian-med-3.3' # hmmm, that would kill debian/control - so don't do this! # /usr/bin/make -f /usr/share/blends-dev/Makefile clean # Clear apt-get cache rm -rf tmp # Remove backup files from source tarball rm -f tasks/*~ # Remove auto generated post{inst,rm} scripts; but only if an according *.stub file exists for task in `ls tasks | grep -v '^[a-z]*:$*' | grep -v '^$'` ; do \ rm -f debian/med-${task}.postinst debian/med-${task}.prerm ; \ done # rm -f debian/med-*.postinst debian/med-*.prerm debian/med-*.postrm debian/med-*.preinst # remove auto generated files for config package rm -f debian/med-config.templates debian/med-config.config \ debian/med-config.install debian/med-config.links \ debian/90med-config # remove auto generated debconf template translations rm -rf debian/po # remove possibly remaining debhelper files rm -f debian/med-*.debhelper.log dh_clean make[1]: Leaving directory '/build/debian-med-3.3' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/debian-med-3.3' # do nothing, we just called the make install target in advance # and want to build the packages without network access make[1]: Leaving directory '/build/debian-med-3.3' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/debian-med-3.3' /usr/share/blends-dev/blend-install-helper dh_install debian-med-tasks.desc usr/share/tasksel/descs make[1]: Leaving directory '/build/debian-med-3.3' debian/rules override_dh_installdocs make[1]: Entering directory '/build/debian-med-3.3' dh_installdocs -A README make[1]: Leaving directory '/build/debian-med-3.3' dh_installchangelogs dh_installman dh_installdebconf dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'med-tasks' in '../med-tasks_3.3_all.deb'. dpkg-deb: building package 'med-epi' in '../med-epi_3.3_all.deb'. dpkg-deb: building package 'med-practice' in '../med-practice_3.3_all.deb'. dpkg-deb: building package 'med-his' in '../med-his_3.3_all.deb'. dpkg-deb: building package 'med-psychology' in '../med-psychology_3.3_all.deb'. dpkg-deb: building package 'med-config' in '../med-config_3.3_all.deb'. dpkg-deb: building package 'med-imaging' in '../med-imaging_3.3_all.deb'. dpkg-deb: building package 'med-research' in '../med-research_3.3_all.deb'. dpkg-deb: building package 'med-all' in '../med-all_3.3_all.deb'. dpkg-deb: building package 'med-statistics' in '../med-statistics_3.3_all.deb'. dpkg-deb: building package 'med-bio' in '../med-bio_3.3_all.deb'. dpkg-deb: building package 'med-imaging-dev' in '../med-imaging-dev_3.3_all.deb'. dpkg-deb: building package 'med-tools' in '../med-tools_3.3_all.deb'. dpkg-deb: building package 'med-bio-dev' in '../med-bio-dev_3.3_all.deb'. dpkg-deb: building package 'med-laboratory' in '../med-laboratory_3.3_all.deb'. dpkg-deb: building package 'med-typesetting' in '../med-typesetting_3.3_all.deb'. dpkg-deb: building package 'med-oncology' in '../med-oncology_3.3_all.deb'. dpkg-deb: building package 'med-cloud' in '../med-cloud_3.3_all.deb'. dpkg-deb: building package 'med-pharmacy' in '../med-pharmacy_3.3_all.deb'. dpkg-deb: building package 'med-data' in '../med-data_3.3_all.deb'. dpkg-deb: building package 'med-physics' in '../med-physics_3.3_all.deb'. dpkg-deb: building package 'med-dental' in '../med-dental_3.3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../debian-med_3.3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10295 and its subdirectories I: Current time: Wed Jul 15 14:53:05 -12 2020 I: pbuilder-time-stamp: 1594867985 Thu Jul 16 02:53:14 UTC 2020 I: 1st build successful. Starting 2nd build on remote node jtx1b-armhf-rb.debian.net. Thu Jul 16 02:53:14 UTC 2020 I: Preparing to do remote build '2' on jtx1b-armhf-rb.debian.net. Thu Jul 16 02:56:44 UTC 2020 I: Deleting $TMPDIR on jtx1b-armhf-rb.debian.net. Thu Jul 16 02:56:47 UTC 2020 I: debian-med_3.3_armhf.changes: Format: 1.8 Date: Fri, 25 Jan 2019 14:49:50 +0100 Source: debian-med Binary: med-all med-bio med-bio-dev med-cloud med-config med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-research med-statistics med-tasks med-tools med-typesetting Architecture: all Version: 3.3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: med-all - Default selection of tasks for Debian Med med-bio - Debian Med bioinformatics packages med-bio-dev - Debian Med packages for development of bioinformatics application med-cloud - Debian Med bioinformatics applications usable in cloud computing med-config - Debian Med general config package med-data - Debian Med drug databases med-dental - Debian Med packages related to dental practice med-epi - Debian Med epidemiology related packages med-his - Debian Med suggestions for Hospital Information Systems med-imaging - Debian Med image processing and visualization packages med-imaging-dev - Debian Med image processing and visualization packages developmen med-laboratory - Debian Med suggestions for medical laboratories med-oncology - Debian Med packages for oncology med-pharmacy - Debian Med packages for pharmaceutical research med-physics - Debian Med packages for medical physicists med-practice - Debian Med packages for practice management med-psychology - Debian Med packages for psychology med-research - Debian Med packages for medical research med-statistics - Debian Med statistics med-tasks - Debian Med tasks for tasksel med-tools - Debian Med several tools med-typesetting - Debian Med support for typesetting and publishing Changes: debian-med (3.3) unstable; urgency=medium . * Re-render tasks with Buster release state . * start of automatic changelog entry * . * Changes in metapackage dependencies -med-bio added: Recommends: pilercr, mosdepth, quast, r-cran-webgestaltr, ragout, kraken2, gffread, filtlong, umis, sailfish, sibelia, atropos, braker, virulencefinder, vcfanno, biobambam2, python3-pybel, kmerresistance, optitype, spaln, kma, stringtie, oncofuse, optimir, kallisto, sina, dendroscope, multiqc, python3-geneimpacts, bismark Suggests: r-cran-forecast removed: Recommends: pybel Suggests: melting-gui -med-bio-dev added: Recommends: libbio-samtools-perl, libbio-asn1-entrezgene-perl, libnexml-java, libbio-tools-run-alignment-clustalw-perl, libbigwig-dev, libbio-tools-phylo-paml-perl, libbio-chado-schema-perl, python3-cgecore, libbio-scf-perl, python3-mirtop, libbio-tools-run-alignment-tcoffee-perl, python3-pybel Ignore: golang-github-biogo-hts-dev -med-bio-ngs added: Recommends: kraken2, stringtie -med-cms added: Recommends: xnat removed: Suggests: xnat -med-imaging added: Recommends: xnat removed: Suggests: xnat -med-imaging-dev added: Recommends: libvtk7-dev Suggests: libvtk6-dev removed: Recommends: libvtk6-dev -med-psychology added: Recommends: r-cran-psychometric, r-cran-psych, r-cran-psyphy, r-cran-psychotree removed: Recommends: psychotree, psychometric, miscpsycho, psyphy, psych Checksums-Sha1: b24abd938b61b0fc43af13fa62e59a943655b8fe 10152 debian-med_3.3_armhf.buildinfo d95f3557ffcdbb66fbdc7a287a9f327c44777920 14260 med-all_3.3_all.deb acebba55eba628d335e44b56abbd3d968726fa81 17648 med-bio-dev_3.3_all.deb fb7d0e07cad83ce5ce4ab183e2f9939cbe29d4c7 20356 med-bio_3.3_all.deb 864895a07c11cbb73a89d3f980b0d10dc57dca9f 17044 med-cloud_3.3_all.deb f4c72d495ea40da6ec9fcebcc294bab58ee8441f 18672 med-config_3.3_all.deb 8cb355a7aebb143668bbbab1cf435b3898fa59df 16216 med-data_3.3_all.deb aebc96cf9747bc18e9e4ab6a96b804e6331a9ca0 16192 med-dental_3.3_all.deb 0d1abe47eed2c8ed064d45f0a638f871dd8a87ee 16644 med-epi_3.3_all.deb d96483d972b099b2eb777b201085142faf0f1b3d 16368 med-his_3.3_all.deb d23872f3616b895492595ebdbc72728e80120b91 16616 med-imaging-dev_3.3_all.deb 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16244 metapackages optional med-typesetting_3.3_all.deb Thu Jul 16 02:56:57 UTC 2020 I: diffoscope 151 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.UWst6YOqp9/debian-med_3.3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.UWst6YOqp9/debian-med_3.3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.UWst6YOqp9/debian-med_3.3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.UWst6YOqp9/b1/debian-med_3.3_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.UWst6YOqp9/b2/debian-med_3.3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.284s) 0.284s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.059s) 0.059s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 16 02:57:16 UTC 2020 I: diffoscope 151 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 16 02:57:16 UTC 2020 I: debian-med from buster built successfully and reproducibly on armhf. Thu Jul 16 02:57:17 UTC 2020 I: Submitting .buildinfo files to external archives: Thu Jul 16 02:57:17 UTC 2020 I: Submitting 12K b1/debian-med_3.3_armhf.buildinfo.asc Thu Jul 16 02:57:18 UTC 2020 I: Submitting 12K b2/debian-med_3.3_armhf.buildinfo.asc Thu Jul 16 02:57:19 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 16 02:57:19 UTC 2020 I: Done submitting .buildinfo files. Thu Jul 16 02:57:19 UTC 2020 I: Removing signed debian-med_3.3_armhf.buildinfo.asc files: removed './b1/debian-med_3.3_armhf.buildinfo.asc' removed './b2/debian-med_3.3_armhf.buildinfo.asc'