Tue Nov 3 19:06:01 UTC 2020 I: starting to build zalign/buster/arm64 on jenkins on '2020-11-03 19:05' Tue Nov 3 19:06:01 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/4569/console.log Tue Nov 3 19:06:01 UTC 2020 I: Downloading source for buster/zalign=0.9.1-4 --2020-11-03 19:06:01-- http://deb.debian.org/debian/pool/main/z/zalign/zalign_0.9.1-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1957 (1.9K) Saving to: ‘zalign_0.9.1-4.dsc’ 0K . 100% 185M=0s 2020-11-03 19:06:01 (185 MB/s) - ‘zalign_0.9.1-4.dsc’ saved [1957/1957] Tue Nov 3 19:06:01 UTC 2020 I: zalign_0.9.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: zalign Binary: zalign Architecture: any Version: 0.9.1-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: https://launchpad.net/zalign Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/zalign Vcs-Git: https://salsa.debian.org/med-team/zalign.git Build-Depends: debhelper (>= 11~), libopenmpi-dev Package-List: zalign deb science optional arch=any Checksums-Sha1: acbe10c007ce41e9a4e2c42c04e0e0836e3ea8dc 348455 zalign_0.9.1.orig.tar.gz 0d2018e98c0cb6dc8cf2d83433a57840fbc35bbb 3660 zalign_0.9.1-4.debian.tar.xz Checksums-Sha256: 1b089fdb402fb4215c98c364dc44f35828ae6fe4434362dba5f71e033e1b1d33 348455 zalign_0.9.1.orig.tar.gz 85c76ff6164c3bc967460b274697d29bcfc1878f42de5b6bed37bd1efc676c7f 3660 zalign_0.9.1-4.debian.tar.xz Files: fe7123027bcecb919766d5fb3cab7731 348455 zalign_0.9.1.orig.tar.gz e8a37fea961f4e8ede0986482668504f 3660 zalign_0.9.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvQyEQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGiNg//d+HAu5tCGqvvbuVXm6DbA+D6mtmcZQ2j xmk/JF+mLNYjHLclJMTNM9kIHFHwxXDBIM2RgvzEDdoLSPt4S1Wi/8R+65qJyGMv UgSrxsyQkps81jh/b3XMxcmfdV0OHG+JMKdTTGq2ae4wSTUSRx6bhJR5iHLitbhJ zTMY2QSL98+WUO95LLVpwrLnvtW2xOZBdWHti3tEz/pJ5TWDmZDVae0h8g/r23Sk haw9jMn7nQLj16Co+hx6g18TVod16Es9GF4dEPCcshqWTjbLPpZUUlnMOy0OtBuU USrk5MrPIHOQN4AI9BvdOb3a2ZV7/sIs5eYc73//yZ6jdPZnEK8afe51mF3ILBAi HDjzLuON5i0meYhHROK3GtwcF/ybIUVLUTytuvzIEWh/yfqHDs6GF7qKpbyLqEeG QXCh+dKtISaoX2goI2qP0DnAyk/gcoesYVXGdfXsh6KSHK/S6feCARryQ3l6Icor Mpn8BPbtLjmJlN/z94jxsIOVWzo/RyNm39Avyh/kI1zUqQlIBWWZsR4/7wU0+cbR 8j+tqiFHDpa+L0+/04DjfhvrEM4SSRylG8PrJ/OKqBdYyxwAPqqZr4pUSKWUNhEO edYDEhWs3XqKpjvkOibBE3WVq1kQDyDntHp3hEN7rytMdvyZougRwcmFXQTQGtZF TBAtiS1EPKI= =8ORs -----END PGP SIGNATURE----- Tue Nov 3 19:06:01 UTC 2020 I: Checking whether the package is not for us Tue Nov 3 19:06:01 UTC 2020 I: Starting 1st build on remote node codethink11-arm64.debian.net. Tue Nov 3 19:06:01 UTC 2020 I: Preparing to do remote build '1' on codethink11-arm64.debian.net. Tue Nov 3 19:08:10 UTC 2020 I: Deleting $TMPDIR on codethink11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 6 13:29:14 -12 2021 I: pbuilder-time-stamp: 1638840554 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [zalign_0.9.1-4.dsc] I: copying [./zalign_0.9.1.orig.tar.gz] I: copying [./zalign_0.9.1-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Oct 24 07:30:12 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./zalign_0.9.1-4.dsc dpkg-source: info: extracting zalign in zalign-0.9.1 dpkg-source: info: unpacking zalign_0.9.1.orig.tar.gz dpkg-source: info: unpacking zalign_0.9.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22400/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22400' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.s72Xc0Ms6D/pbuilderrc_neS1 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.s72Xc0Ms6D/b1 --logfile b1/build.log zalign_0.9.1-4.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink11-arm64 4.4.0-190-generic #220-Ubuntu SMP Fri Aug 28 23:03:33 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 23 02:48 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/22400/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libopenmpi-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 27.9 MB of archives. After unpacking 104 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 openssh-client arm64 1:7.9p1-10+deb10u2 [757 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libnl-3-200 arm64 3.4.0-1 [54.9 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libnl-route-3-200 arm64 3.4.0-1 [134 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libibverbs1 arm64 22.1-1 [47.8 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 ibverbs-providers arm64 22.1-1 [174 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libevent-2.1-6 arm64 2.1.8-stable-4 [150 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libevent-core-2.1-6 arm64 2.1.8-stable-4 [112 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libevent-pthreads-2.1-6 arm64 2.1.8-stable-4 [47.7 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libnuma1 arm64 2.0.12-1 [25.6 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libhwloc5 arm64 1.11.12-3 [97.9 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libnuma-dev arm64 2.0.12-1 [40.0 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libltdl-dev arm64 2.4.6-9 [162 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libhwloc-dev arm64 1.11.12-3 [165 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libpciaccess0 arm64 0.14-1 [51.0 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 ocl-icd-libopencl1 arm64 2.2.12-2 [37.4 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libhwloc-plugins arm64 1.11.12-3 [16.9 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libnl-3-dev arm64 3.4.0-1 [98.2 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libnl-route-3-dev arm64 3.4.0-1 [162 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libibverbs-dev arm64 22.1-1 [356 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libpmix2 arm64 3.1.2-3 [455 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libopenmpi3 arm64 3.1.3-11 [1996 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 openmpi-common all 3.1.3-11 [165 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 openmpi-bin arm64 3.1.3-11 [199 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libopenmpi-dev arm64 3.1.3-11 [974 kB] Fetched 27.9 MB in 8s (3653 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libltdl7:arm64 (2.4.6-9) ... Setting up libevent-core-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up libevent-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libnuma1:arm64 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:arm64 (2.2.12-2) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libnl-3-200:arm64 (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libtool (2.4.6-9) ... Setting up libhwloc5:arm64 (1.11.12-3) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:arm64 (1.11.12-3) ... Setting up libnuma-dev:arm64 (2.0.12-1) ... Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:arm64 (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:arm64 (22.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:arm64 (3.1.2-3) ... Setting up ibverbs-providers:arm64 (22.1-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libopenmpi3:arm64 (3.1.3-11) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:arm64 (3.4.0-1) ... Setting up libltdl-dev:arm64 (2.4.6-9) ... Setting up libhwloc-dev:arm64 (1.11.12-3) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:arm64 (22.1-1) ... Setting up libopenmpi-dev:arm64 (3.1.3-11) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/zalign-0.9.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package zalign dpkg-buildpackage: info: source version 0.9.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:12: installing './compile' configure.in:11: installing './missing' src/Makefile.am:2: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/Makefile.am: installing './depcomp' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for memset... yes checking for mpic++... mpic++ checking for MPI_Init... yes checking for mpi.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j8 make[1]: Entering directory '/build/zalign-0.9.1' make all-recursive make[2]: Entering directory '/build/zalign-0.9.1' Making all in src make[3]: Entering directory '/build/zalign-0.9.1/src' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignarray.o alignarray.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignbounds.o alignbounds.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignment.o alignment.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkalign.o blkalign.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkborder.o blkborder.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkseq.o blkseq.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkstrat.o blkstrat.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o fastareader.o fastareader.cpp In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/alignment.h:23, from alignment.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/alignbounds.h:23, from alignbounds.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/blkseq.h:23, from ../include/blkborder.h:23, from blkborder.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/alignbounds.h:23, from ../include/alignarray.h:25, from alignarray.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/blkseq.h:23, from blkseq.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/opt.h:23, from ../include/fastareader.h:26, from fastareader.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/alignbounds.h:23, from ../include/alignarray.h:25, from ../include/blkstrat.h:25, from blkstrat.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/blkseq.h:23, from ../include/blkalign.h:26, from blkalign.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o linearfickettaligner.o linearfickettaligner.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialign.o mpialign.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignmaster.o mpialignmaster.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignslave.o mpialignslave.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o opt.o opt.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o score.o score.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o sequence.o sequence.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o limitsplotter.o limitsplotter.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o zalign.o zalign.cpp In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/alignbounds.h:23, from mpialignslave.cpp:23: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from mpialign.cpp:27: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from mpialignmaster.cpp:22: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/alignment.h:23, from ../include/linearfickettaligner.h:27, from linearfickettaligner.cpp:25: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/opt.h:23, from opt.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ linearfickettaligner.cpp: In member function 'void LinearFickettAligner::initializeFickettTable()': linearfickettaligner.cpp:78:14: warning: variable 'i' set but not used [-Wunused-but-set-variable] position_t i; ^ linearfickettaligner.cpp: In member function 's_alignment* LinearFickettAligner::align()': linearfickettaligner.cpp:237:14: warning: variable 'minLen' set but not used [-Wunused-but-set-variable] position_t minLen; ^~~~~~ linearfickettaligner.cpp: In member function 's_alignment* LinearFickettAligner::traceback(position_t, position_t)': linearfickettaligner.cpp:344:14: warning: variable 'tlen' set but not used [-Wunused-but-set-variable] position_t tlen; ^~~~ In file included from linearfickettaligner.cpp:25: ../include/linearfickettaligner.h: In instantiation of 'void LinearFickettAligner::LinearFickettTable::extendTable() [with T = int]': ../include/linearfickettaligner.h:70:11: required from 'void LinearFickettAligner::LinearFickettTable::reserve(count_t) [with T = int; count_t = unsigned int]' linearfickettaligner.cpp:139:20: required from here ../include/linearfickettaligner.h:123:16: warning: variable 'size' set but not used [-Wunused-but-set-variable] size_t size; ^~~~ ../include/linearfickettaligner.h: In instantiation of 'void LinearFickettAligner::LinearFickettTable::extendTable() [with T = unsigned char]': ../include/linearfickettaligner.h:70:11: required from 'void LinearFickettAligner::LinearFickettTable::reserve(count_t) [with T = unsigned char; count_t = unsigned int]' linearfickettaligner.cpp:142:26: required from here ../include/linearfickettaligner.h:123:16: warning: variable 'size' set but not used [-Wunused-but-set-variable] In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/sequence.h:23, from sequence.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ mpialign.cpp: In function 'void gatherBestScores()': mpialign.cpp:248:13: warning: format '%d' expects argument of type 'int', but argument 2 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] printf ("Alignments found: %d\n", root_BufferCount); ^~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~ mpialign.cpp: In function 'void mpialign_stage1()': mpialign.cpp:361:13: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] printf (" S sequence: %u characters\n", strlen(s)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ mpialign.cpp:363:13: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] printf (" T sequence: %u characters\n", strlen(t)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from ../include/alignbounds.h:23, from ../include/zalign.h:31, from zalign.cpp:20: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ zalign.cpp: In function 'int main(int, char**)': zalign.cpp:136:11: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] printf (" S sequence: %u characters\n", strlen(s)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ zalign.cpp:138:11: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] printf (" T sequence: %u characters\n", strlen(t)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z,relro -Wl,-z,now -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z,relro -Wl,-z,now -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o -lm libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -ffile-prefix-map=/build/zalign-0.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-z -Wl,relro -Wl,-z -Wl,now -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o -lm make[3]: Leaving directory '/build/zalign-0.9.1/src' make[3]: Entering directory '/build/zalign-0.9.1' make[3]: Leaving directory '/build/zalign-0.9.1' make[2]: Leaving directory '/build/zalign-0.9.1' make[1]: Leaving directory '/build/zalign-0.9.1' dh_auto_test make -j8 check VERBOSE=1 make[1]: Entering directory '/build/zalign-0.9.1' Making check in src make[2]: Entering directory '/build/zalign-0.9.1/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/zalign-0.9.1/src' make[2]: Entering directory '/build/zalign-0.9.1' make[2]: Leaving directory '/build/zalign-0.9.1' make[1]: Leaving directory '/build/zalign-0.9.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/zalign-0.9.1/debian/zalign AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/zalign-0.9.1' Making install in src make[2]: Entering directory '/build/zalign-0.9.1/src' make[3]: Entering directory '/build/zalign-0.9.1/src' /bin/mkdir -p '/build/zalign-0.9.1/debian/zalign/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c mpialign zalign '/build/zalign-0.9.1/debian/zalign/usr/bin' libtool: install: /usr/bin/install -c mpialign /build/zalign-0.9.1/debian/zalign/usr/bin/mpialign libtool: install: /usr/bin/install -c zalign /build/zalign-0.9.1/debian/zalign/usr/bin/zalign make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/zalign-0.9.1/src' make[2]: Leaving directory '/build/zalign-0.9.1/src' make[2]: Entering directory '/build/zalign-0.9.1' make[3]: Entering directory '/build/zalign-0.9.1' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/zalign-0.9.1' make[2]: Leaving directory '/build/zalign-0.9.1' make[1]: Leaving directory '/build/zalign-0.9.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/zalign/usr/bin/mpialign debian/zalign/usr/bin/zalign were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'zalign-dbgsym' in '../zalign-dbgsym_0.9.1-4_arm64.deb'. dpkg-deb: building package 'zalign' in '../zalign_0.9.1-4_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../zalign_0.9.1-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22400 and its subdirectories I: Current time: Mon Dec 6 13:31:08 -12 2021 I: pbuilder-time-stamp: 1638840668 Tue Nov 3 19:08:12 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink12-arm64.debian.net. Tue Nov 3 19:08:12 UTC 2020 I: Preparing to do remote build '2' on codethink12-arm64.debian.net. Tue Nov 3 19:10:33 UTC 2020 I: Deleting $TMPDIR on codethink12-arm64.debian.net. Tue Nov 3 19:10:34 UTC 2020 I: zalign_0.9.1-4_arm64.changes: Format: 1.8 Date: Wed, 24 Oct 2018 21:27:25 +0200 Source: zalign Binary: zalign zalign-dbgsym Architecture: arm64 Version: 0.9.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: zalign - parallel local alignment of biological sequences Changes: zalign (0.9.1-4) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 Checksums-Sha1: 1589485c9ed0b200623cf6e5181e2e0b081fd31e 1373444 zalign-dbgsym_0.9.1-4_arm64.deb 780641943dbaa5b0acb9e544db079a4a26d8914a 5695 zalign_0.9.1-4_arm64.buildinfo fb838f0adc3f645852ed413b343f25df83b317a8 45816 zalign_0.9.1-4_arm64.deb Checksums-Sha256: 0d581bfd0459416c246a9ccb5814c523aa3a3d5e12e667b5ca630c04300731c7 1373444 zalign-dbgsym_0.9.1-4_arm64.deb 6766819d7c94526dca0d4e6e11a6fedf5b03aa0d41991ad7c91820d7404d3f09 5695 zalign_0.9.1-4_arm64.buildinfo ce2ccae6612bf3756fd5db3a92ef198eb7d8abc29ba4e57c99a397f1c3147d91 45816 zalign_0.9.1-4_arm64.deb Files: 218f292b7c8c174ba99e2d7a20caa060 1373444 debug optional zalign-dbgsym_0.9.1-4_arm64.deb da44e634998e7fd0e2926cf908e20e24 5695 science optional zalign_0.9.1-4_arm64.buildinfo f499a6a0b01f46d129c512b17939a953 45816 science optional zalign_0.9.1-4_arm64.deb Tue Nov 3 19:10:36 UTC 2020 I: diffoscope 161 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.s72Xc0Ms6D/zalign_0.9.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.s72Xc0Ms6D/zalign_0.9.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.s72Xc0Ms6D/zalign_0.9.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.s72Xc0Ms6D/b1/zalign_0.9.1-4_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.s72Xc0Ms6D/b2/zalign_0.9.1-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.226s) 0.226s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Nov 3 19:10:39 UTC 2020 I: diffoscope 161 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 3 19:10:39 UTC 2020 I: zalign from buster built successfully and reproducibly on arm64. Tue Nov 3 19:10:40 UTC 2020 I: Submitting .buildinfo files to external archives: Tue Nov 3 19:10:40 UTC 2020 I: Submitting 8.0K b1/zalign_0.9.1-4_arm64.buildinfo.asc Tue Nov 3 19:10:41 UTC 2020 I: Submitting 8.0K b2/zalign_0.9.1-4_arm64.buildinfo.asc Tue Nov 3 19:10:42 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 3 19:10:42 UTC 2020 I: Done submitting .buildinfo files. Tue Nov 3 19:10:42 UTC 2020 I: Removing signed zalign_0.9.1-4_arm64.buildinfo.asc files: removed './b1/zalign_0.9.1-4_arm64.buildinfo.asc' removed './b2/zalign_0.9.1-4_arm64.buildinfo.asc'