Sat Nov 7 00:10:36 UTC 2020 I: starting to build python-pyfaidx/buster/arm64 on jenkins on '2020-11-07 00:10' Sat Nov 7 00:10:36 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_26/24766/console.log Sat Nov 7 00:10:36 UTC 2020 I: Downloading source for buster/python-pyfaidx=0.5.5.2-1 --2020-11-07 00:10:36-- http://deb.debian.org/debian/pool/main/p/python-pyfaidx/python-pyfaidx_0.5.5.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2400 (2.3K) Saving to: ‘python-pyfaidx_0.5.5.2-1.dsc’ 0K .. 100% 20.3M=0s 2020-11-07 00:10:36 (20.3 MB/s) - ‘python-pyfaidx_0.5.5.2-1.dsc’ saved [2400/2400] Sat Nov 7 00:10:36 UTC 2020 I: python-pyfaidx_0.5.5.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-pyfaidx Binary: python-pyfaidx, python3-pyfaidx, python-pyfaidx-examples Architecture: all Version: 0.5.5.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/mdshw5/pyfaidx Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/python-pyfaidx Vcs-Git: https://salsa.debian.org/med-team/python-pyfaidx.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper (>= 11~), dh-python, python-all, python-coverage, python-setuptools, python-nose, python-numpy, python-six, python-mock, python3-all, python3-coverage, python3-setuptools, python3-nose, python3-numpy, python3-six, python3-mock Package-List: python-pyfaidx deb python optional arch=all python-pyfaidx-examples deb python optional arch=all python3-pyfaidx deb python optional arch=all Checksums-Sha1: 0760b1225e6777ab510c0b5b89ff416e7a73e94b 93592 python-pyfaidx_0.5.5.2.orig.tar.gz d764bba87ebb3a527de241755176d5a957b2892a 4188 python-pyfaidx_0.5.5.2-1.debian.tar.xz Checksums-Sha256: 29284a25725c50719e24dcf507a152ec0fb0b7b56dd236c2f22dca8c1a4591a6 93592 python-pyfaidx_0.5.5.2.orig.tar.gz b420cb86e83790e558830a5cf1dfaf62bcb3f8cb81a5651500d7cf836d1dc3f8 4188 python-pyfaidx_0.5.5.2-1.debian.tar.xz Files: 2378b0939be1f48c5fa8ec2fd2429220 93592 python-pyfaidx_0.5.5.2.orig.tar.gz d705484e240d8e33ca36e26ee31e9801 4188 python-pyfaidx_0.5.5.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvT9QURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFnOxAAjdp/3NnuLzPEc48RDcRqLKIIW42TYLu2 d+XhdvAjou3RjzcwU+vz+t1/aw1+PyayxVLHlUOWw6uPVhgp7xuaUOWkK3muleB0 RVQgzv2mgoxtuX5bcGlIIbrzNOzpOU2qRVwfIXofsVRFsL7fL43ZILvXx9YsETNJ akv0q8wyQ2vKd9fS98bEzrKiL+H+dmPc9q64LsvwH99xSCGPTwIrh7LYvsbtdyla EzywRoYmFy8UoC1pu8zw+i3RD+MRT7GkGMHdNsQUduzG6VtxlcAOwUd83QmLfWmQ Y9YoTtaBxl5DlPErm3DSN5xClIAoB85F7XLbwuwZxHsdorE7IiPAEPpPXd24KzbG PQ5NqoT965MUXIzFx0x1JjnCu3wcP0Rhrl6lcymYULrSdBka5nd3ZgpepYFtbA1h 7rlbeCZbe4Ft3bSHxBsHw5hNM5FxgwyvDPvBrVb7xj/Mq8LG+VJpzmaVi3AUq7k6 hvubOxRT5L0QsWplkpIXuhBZXv8V8WV2dmMmK6DITpEYxEfcje2MZrngBPE5uXtR OiADp/N7QSbKx42HDIr/TxkAvXb94Kkv+xF4AbVn89GrdYY+UGpwfK9isADiK5RI wSX2pE2TN8Z0C0GEzzVIksjKvE08xCPeutGUHanlgQjLR9iMCmbcEWARUPssyX0A 4SP5eAKGIKc= =H5Lw -----END PGP SIGNATURE----- Sat Nov 7 00:10:36 UTC 2020 I: Checking whether the package is not for us Sat Nov 7 00:10:36 UTC 2020 I: Starting 1st build on remote node codethink15-arm64.debian.net. Sat Nov 7 00:10:36 UTC 2020 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Sat Nov 7 00:13:18 UTC 2020 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 9 18:33:45 -12 2021 I: pbuilder-time-stamp: 1639118025 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyfaidx_0.5.5.2-1.dsc] I: copying [./python-pyfaidx_0.5.5.2.orig.tar.gz] I: copying [./python-pyfaidx_0.5.5.2-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 26 17:17:57 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pyfaidx_0.5.5.2-1.dsc dpkg-source: info: extracting python-pyfaidx in python-pyfaidx-0.5.5.2 dpkg-source: info: unpacking python-pyfaidx_0.5.5.2.orig.tar.gz dpkg-source: info: unpacking python-pyfaidx_0.5.5.2-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4541/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4541' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.35CbtLvKN7/pbuilderrc_5g8U --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.35CbtLvKN7/b1 --logfile b1/build.log python-pyfaidx_0.5.5.2-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.4.0-190-generic #220-Ubuntu SMP Fri Aug 28 23:03:33 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 23 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/4541/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python-all, python-coverage, python-setuptools, python-nose, python-numpy, python-six, python-mock, python3-all, python3-coverage, python3-setuptools, python3-nose, python3-numpy, python3-six, python3-mock dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all; however: Package python-all is not installed. pbuilder-satisfydepends-dummy depends on python-coverage; however: Package python-coverage is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-nose; however: Package python-nose is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-six; however: Package python-six is not installed. pbuilder-satisfydepends-dummy depends on python-mock; however: Package python-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-coverage; however: Package python3-coverage is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-mock; however: Package python3-mock is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-coverage{a} python-funcsigs{a} python-minimal{a} python-mock{a} python-nose{a} python-numpy{a} python-pbr{a} python-pkg-resources{a} python-setuptools{a} python-six{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-all{a} python3-coverage{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-mock{a} python3-nose{a} python3-numpy{a} python3-pbr{a} python3-pkg-resources{a} python3-setuptools{a} python3-six{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libjs-jquery libjs-jquery-isonscreen libjs-jquery-tablesorter libjs-jquery-throttle-debounce libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 36.5 MB of archives. After unpacking 153 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 64 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 python-coverage arm64 4.5.2+dfsg.1-1 [144 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 python-funcsigs all 1.0.2-4 [13.7 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 python-pbr all 4.2.0-5 [56.5 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 python-mock all 2.0.0-4 [60.2 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 python-nose all 1.3.7-4 [132 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 python3-all arm64 3.7.3-1 [1068 B] Get: 74 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 python3-coverage arm64 4.5.2+dfsg.1-1 [144 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 python3-setuptools all 40.8.0-1 [306 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 python3-six all 1.12.0-1 [15.7 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 python3-pbr all 4.2.0-5 [56.5 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 python3-mock all 2.0.0-4 [60.3 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 python3-nose all 1.3.7-4 [132 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 python3-numpy arm64 1:1.16.2-1 [1991 kB] Fetched 36.5 MB in 3s (10.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... 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Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... 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Selecting previously unselected package libxml2:arm64. Preparing to unpack .../21-libxml2_2.9.4+dfsg1-7+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../22-libcroco3_0.6.12-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-3) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../23-libncurses6_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.19.8.1-9_arm64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... 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Preparing to unpack .../39-python-six_1.12.0-1_all.deb ... Unpacking python-six (1.12.0-1) ... Selecting previously unselected package python-pbr. Preparing to unpack .../40-python-pbr_4.2.0-5_all.deb ... Unpacking python-pbr (4.2.0-5) ... Selecting previously unselected package python-mock. Preparing to unpack .../41-python-mock_2.0.0-4_all.deb ... Unpacking python-mock (2.0.0-4) ... Selecting previously unselected package python-nose. Preparing to unpack .../42-python-nose_1.3.7-4_all.deb ... Unpacking python-nose (1.3.7-4) ... Selecting previously unselected package python-numpy. Preparing to unpack .../43-python-numpy_1%3a1.16.2-1_arm64.deb ... Unpacking python-numpy (1:1.16.2-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../44-python3-all_3.7.3-1_arm64.deb ... Unpacking python3-all (3.7.3-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../45-python3-pkg-resources_40.8.0-1_all.deb ... Unpacking python3-pkg-resources (40.8.0-1) ... Selecting previously unselected package python3-coverage. Preparing to unpack .../46-python3-coverage_4.5.2+dfsg.1-1_arm64.deb ... Unpacking python3-coverage (4.5.2+dfsg.1-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../47-python3-setuptools_40.8.0-1_all.deb ... Unpacking python3-setuptools (40.8.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../48-python3-six_1.12.0-1_all.deb ... Unpacking python3-six (1.12.0-1) ... Selecting previously unselected package python3-pbr. Preparing to unpack .../49-python3-pbr_4.2.0-5_all.deb ... Unpacking python3-pbr (4.2.0-5) ... Selecting previously unselected package python3-mock. Preparing to unpack .../50-python3-mock_2.0.0-4_all.deb ... Unpacking python3-mock (2.0.0-4) ... Selecting previously unselected package python3-nose. Preparing to unpack .../51-python3-nose_1.3.7-4_all.deb ... Unpacking python3-nose (1.3.7-4) ... 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Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-pyfaidx-0.5.5.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-pyfaidx dpkg-buildpackage: info: source version 0.5.5.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean LC_ALL=C.UTF-8 dh clean --with python2,python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-pyfaidx-0.5.5.2/.pybuild/cpython2_2.7_pyfaidx/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-pyfaidx-0.5.5.2/.pybuild/cpython3_3.7_pyfaidx/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build LC_ALL=C.UTF-8 dh build --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/python-pyfaidx-0.5.5.2/.pybuild/cpython2_2.7_pyfaidx/build/pyfaidx copying pyfaidx/cli.py -> /build/python-pyfaidx-0.5.5.2/.pybuild/cpython2_2.7_pyfaidx/build/pyfaidx copying pyfaidx/__init__.py -> /build/python-pyfaidx-0.5.5.2/.pybuild/cpython2_2.7_pyfaidx/build/pyfaidx I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pyfaidx-0.5.5.2/.pybuild/cpython3_3.7_pyfaidx/build/pyfaidx copying pyfaidx/cli.py -> /build/python-pyfaidx-0.5.5.2/.pybuild/cpython3_3.7_pyfaidx/build/pyfaidx copying pyfaidx/__init__.py -> /build/python-pyfaidx-0.5.5.2/.pybuild/cpython3_3.7_pyfaidx/build/pyfaidx debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pyfaidx-0.5.5.2' dh_auto_test -- --test --system=custom --test-args='set -e; \ {interpreter} -m "nose" --with-coverage --cover-package=pyfaidx' I: pybuild base:217: set -e; \ python2.7 -m "nose" --with-coverage --cover-package=pyfaidx Doctest: pyfaidx.Sequence.__getitem__ ... ok Doctest: pyfaidx.Sequence.__len__ ... ok Doctest: pyfaidx.Sequence.__neg__ ... ok Doctest: pyfaidx.Sequence.complement ... ok Doctest: pyfaidx.Sequence.fancy_name ... ok Doctest: pyfaidx.Sequence.gc ... ok Doctest: pyfaidx.Sequence.long_name ... ok Doctest: pyfaidx.Sequence.orientation ... ok Doctest: pyfaidx.Sequence.reverse ... ok Doctest: pyfaidx.check_bad_lines ... ok Doctest: pyfaidx.complement ... ok Check for pathogenic FastaRecord.long_name behavior in mdshw5/pyfaidx#62 ... ok Test that deflines extracted using FastaRecord.long_name are ... ok Test the __array_interface__ ... ok Test that the sequence is always returned in ... ok test_unpadded_length (test_FastaRecord.TestFastaRecord) ... ok test_mutate_fasta_to_N (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_fasta_to_same (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_immutable_fasta (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_single_position (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_too_long (test_FastaRecord.TestMutableFastaRecord) ... ok test_fetch_whole_fasta (test_FastaRecord_iter.TestFastaRecordIter) ... ok test_line_len (test_FastaRecord_iter.TestFastaRecordIter) ... ok test_reverse_iter (test_FastaRecord_iter.TestFastaRecordIter) ... ok test_all_diff (test_FastaVariant.TestFastaVariant) ... SKIP test_all_pos (test_FastaVariant.TestFastaVariant) ... SKIP test_fetch_het_variant (test_FastaVariant.TestFastaVariant) ... SKIP test_fetch_hom_variant (test_FastaVariant.TestFastaVariant) ... SKIP test_fetch_variant (test_FastaVariant.TestFastaVariant) ... SKIP seq[0:0] should return a blank string mdshw5/pyfaidx#53 ... SKIP Fetch past the end of a gene entry ... SKIP Fetch past the end of a gene entry ... SKIP test_fetch_end (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Fetch a key that does not exist ... SKIP test_fetch_middle (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Fetch starting with a negative coordinate ... SKIP Fetch past the end of a gene entry ... SKIP Fetch starting with a negative coordinate ... SKIP test_fetch_whole_entry (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_fetch_whole_fasta (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_integer_index (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_integer_slice (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_consistency (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_end_faidx (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_end_fasta (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_start (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix_negate (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix_one_based_false (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix_one_based_false_negate (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_line_len (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Test that deflines extracted using FastaRecord.long_name are ... SKIP test_mutable_bgzf (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_rev (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_slice_from_beginning (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_slice_from_end (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Samtools BGZF index should be identical to pyfaidx BGZF index ... SKIP test_integer_index (test_Fasta_integer_index.TestFastaIntIndex) ... ok test_integer_slice (test_Fasta_integer_index.TestFastaIntIndex) ... ok Test that each read of a sequence range is atomic. ... ok Combine the above two tests to check that interleaved reads and writes don't conflict. ... ok Test that each write of a sequence range is atomic. ... ok test_fetch_whole_entry (test_bio_seqio.TestBioSeqIO) ... SKIP test_revcomp_whole_entry (test_bio_seqio.TestBioSeqIO) ... SKIP test_slice_whole_entry (test_bio_seqio.TestBioSeqIO) ... SKIP Test that --auto-strand produces the same output as --reverse --complement ... ok test_fetch_error (test_faidx.TestCLI) ... ok test_fetch_whole_file (test_faidx.TestCLI) ... ok test_key_warning (test_faidx.TestCLI) ... warning: foo not found in file ok test_not_regexp (test_faidx.TestCLI) ... ok test_not_regexp_multi (test_faidx.TestCLI) ... ok test_regexp (test_faidx.TestCLI) ... ok test_short_line_lengths (test_faidx.TestCLI) ... ok test_split_entry (test_faidx.TestCLI) ... ok seq[0:0] should return a blank string mdshw5/pyfaidx#53 ... ok Fetch past the end of a gene entry ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_fetch_end ... ok Fetch a key that does not exist ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_fetch_middle ... ok Fetch starting with a negative coordinate ... ok Fetch past the end of a gene entry ... ok Fetch starting with a negative coordinate ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_fetch_whole_entry ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_consistency ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_end_faidx ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_end_fasta ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_start ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix_negate ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix_one_based_false ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix_one_based_false_negate ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_rev ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_slice_from_beginning ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_slice_from_end ... ok Fetch past the end of a gene entry ... ok test_build (test_feature_indexing.TestIndexing) ... ok test_build_issue_111 (test_feature_indexing.TestIndexing) ... ok test_build_issue_141 (test_feature_indexing.TestIndexing) ... ok Ensure that blank lines between entries are treated in the ... ok Ensure that the fasta file is closed if construction of the 'Faidx' file ... ok Ensure that the fasta file is closed if construction of the 'Faidx' file ... ok Ensure that index file is not built when build_index=False. See mdshw5/pyfaidx#134. ... ok Ensure that an exception is raised when a file contains no deflines. See mdshw5/pyfaidx#144. ... ok test_order (test_feature_indexing.TestIndexing) ... ok This test ensures that the index is regenerated when the FASTA ... ok Makes all full-length lines blank and checks that error is raised ... ok Makes all full-length lines long and checks that error is raised ... ok Makes all full-length lines short and checks that error is raised ... ok test_duplicated_keys (test_feature_key_function.TestFeatureKeyFunction) ... ok test_duplicated_keys_longest (test_feature_key_function.TestFeatureKeyFunction) ... ok test_duplicated_keys_shortest (test_feature_key_function.TestFeatureKeyFunction) ... ok test_key_function_by_dictionary_get_key (test_feature_key_function.TestFeatureKeyFunction) ... ok test_key_function_by_fetch (test_feature_key_function.TestFeatureKeyFunction) ... ok test_keys (test_feature_key_function.TestFeatureKeyFunction) ... ok test_bounds_error (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_exceed (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_false (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_true (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_value (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_as_raw_false (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_false_error (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_true (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_true_error (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_type_when_blen_lt_0 (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok Check get_seq with rc argument ... ok Fetch sequence by blocks ... ok test_key_function_by_dictionary_get_key (test_feature_split_char.TestFeatureSplitChar) ... ok test_key_function_by_fetch (test_feature_split_char.TestFeatureSplitChar) ... ok test_keys (test_feature_split_char.TestFeatureSplitChar) ... ok test_stop (test_feature_split_char.TestFeatureSplitChar) ... ok test_sequence_class.test_negate ... ok test_sequence_class.test_negate_metadata ... ok test_sequence_class.test_seq_invalid ... ok test_sequence_class.test_integer_index ... ok test_sequence_class.test_slice_index ... ok test_sequence_class.test_comp_invalid ... ok test_sequence_class.test_check_coordinates ... ok test_sequence_class.test_comp_valid ... ok test_sequence_class.test_comp_empty ... ok Name Stmts Miss Cover Missing --------------------------------------------------- pyfaidx/__init__.py 712 149 79% 14-15, 24, 165, 170, 293, 336-347, 350, 360-367, 377-381, 389, 393, 418-419, 444, 447, 483, 485, 491, 545-546, 590, 597-600, 665-668, 711, 724, 726, 746, 761-772, 778, 803, 810, 850, 893-904, 927, 939, 943, 945, 947, 952, 1007, 1015-1016, 1019, 1054, 1061, 1083-1122, 1125, 1134-1154, 1172-1174, 1198-1203, 1211-1212, 1250, 1258, 1264-1265 pyfaidx/cli.py 256 128 50% 31-36, 47-50, 78, 80, 91-106, 120-140, 181-182, 186, 190, 192, 195, 202-207, 211-217, 231, 234, 240-242, 251-253, 259, 268-281, 285, 289-290, 293-296, 311-318, 324-331, 337-345, 351-361, 364 --------------------------------------------------- TOTAL 968 277 71% ---------------------------------------------------------------------- Ran 139 tests in 31.703s OK (SKIP=36) I: pybuild base:217: set -e; \ python3.7 -m "nose" --with-coverage --cover-package=pyfaidx Doctest: pyfaidx.Sequence.__getitem__ ... ok Doctest: pyfaidx.Sequence.__len__ ... ok Doctest: pyfaidx.Sequence.__neg__ ... ok Doctest: pyfaidx.Sequence.complement ... ok Doctest: pyfaidx.Sequence.fancy_name ... ok Doctest: pyfaidx.Sequence.gc ... ok Doctest: pyfaidx.Sequence.long_name ... ok Doctest: pyfaidx.Sequence.orientation ... ok Doctest: pyfaidx.Sequence.reverse ... ok Doctest: pyfaidx.check_bad_lines ... ok Doctest: pyfaidx.complement ... ok Check for pathogenic FastaRecord.long_name behavior in mdshw5/pyfaidx#62 ... ok Test that deflines extracted using FastaRecord.long_name are ... ok Test the __array_interface__ ... ok Test that the sequence is always returned in ... ok test_unpadded_length (test_FastaRecord.TestFastaRecord) ... ok test_mutate_fasta_to_N (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_fasta_to_same (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_immutable_fasta (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_single_position (test_FastaRecord.TestMutableFastaRecord) ... ok test_mutate_too_long (test_FastaRecord.TestMutableFastaRecord) ... ok test_fetch_whole_fasta (test_FastaRecord_iter.TestFastaRecordIter) ... ok test_line_len (test_FastaRecord_iter.TestFastaRecordIter) ... ok test_reverse_iter (test_FastaRecord_iter.TestFastaRecordIter) ... ok test_all_diff (test_FastaVariant.TestFastaVariant) ... SKIP test_all_pos (test_FastaVariant.TestFastaVariant) ... SKIP test_fetch_het_variant (test_FastaVariant.TestFastaVariant) ... SKIP test_fetch_hom_variant (test_FastaVariant.TestFastaVariant) ... SKIP test_fetch_variant (test_FastaVariant.TestFastaVariant) ... SKIP seq[0:0] should return a blank string mdshw5/pyfaidx#53 ... SKIP Fetch past the end of a gene entry ... SKIP Fetch past the end of a gene entry ... SKIP test_fetch_end (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Fetch a key that does not exist ... SKIP test_fetch_middle (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Fetch starting with a negative coordinate ... SKIP Fetch past the end of a gene entry ... SKIP Fetch starting with a negative coordinate ... SKIP test_fetch_whole_entry (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_fetch_whole_fasta (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_integer_index (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_integer_slice (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_consistency (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_end_faidx (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_end_fasta (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_74_start (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix_negate (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix_one_based_false (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_issue_79_fix_one_based_false_negate (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_line_len (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Test that deflines extracted using FastaRecord.long_name are ... SKIP test_mutable_bgzf (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_rev (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_slice_from_beginning (test_Fasta_bgzip.TestFastaBGZF) ... SKIP test_slice_from_end (test_Fasta_bgzip.TestFastaBGZF) ... SKIP Samtools BGZF index should be identical to pyfaidx BGZF index ... SKIP test_integer_index (test_Fasta_integer_index.TestFastaIntIndex) ... ok test_integer_slice (test_Fasta_integer_index.TestFastaIntIndex) ... ok Test that each read of a sequence range is atomic. ... ok Combine the above two tests to check that interleaved reads and writes don't conflict. ... ok Test that each write of a sequence range is atomic. ... ok test_fetch_whole_entry (test_bio_seqio.TestBioSeqIO) ... SKIP test_revcomp_whole_entry (test_bio_seqio.TestBioSeqIO) ... SKIP test_slice_whole_entry (test_bio_seqio.TestBioSeqIO) ... SKIP Test that --auto-strand produces the same output as --reverse --complement ... ok test_fetch_error (test_faidx.TestCLI) ... ok test_fetch_whole_file (test_faidx.TestCLI) ... ok test_key_warning (test_faidx.TestCLI) ... warning: foo not found in file ok test_not_regexp (test_faidx.TestCLI) ... ok test_not_regexp_multi (test_faidx.TestCLI) ... ok test_regexp (test_faidx.TestCLI) ... ok test_short_line_lengths (test_faidx.TestCLI) ... ok test_split_entry (test_faidx.TestCLI) ... ok seq[0:0] should return a blank string mdshw5/pyfaidx#53 ... ok Fetch past the end of a gene entry ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_fetch_end ... ok Fetch a key that does not exist ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_fetch_middle ... ok Fetch starting with a negative coordinate ... ok Fetch past the end of a gene entry ... ok Fetch starting with a negative coordinate ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_fetch_whole_entry ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_consistency ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_end_faidx ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_end_fasta ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_74_start ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix_negate ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix_one_based_false ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_issue_79_fix_one_based_false_negate ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_rev ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_slice_from_beginning ... ok test_feature_bounds_check.TestFeatureBoundsCheck.test_slice_from_end ... ok Fetch past the end of a gene entry ... ok test_build (test_feature_indexing.TestIndexing) ... ok test_build_issue_111 (test_feature_indexing.TestIndexing) ... ok test_build_issue_141 (test_feature_indexing.TestIndexing) ... ok Ensure that blank lines between entries are treated in the ... ok Ensure that the fasta file is closed if construction of the 'Faidx' file ... ok Ensure that the fasta file is closed if construction of the 'Faidx' file ... ok Ensure that index file is not built when build_index=False. See mdshw5/pyfaidx#134. ... ok Ensure that an exception is raised when a file contains no deflines. See mdshw5/pyfaidx#144. ... ok test_order (test_feature_indexing.TestIndexing) ... ok This test ensures that the index is regenerated when the FASTA ... ok Makes all full-length lines blank and checks that error is raised ... ok Makes all full-length lines long and checks that error is raised ... ok Makes all full-length lines short and checks that error is raised ... ok test_duplicated_keys (test_feature_key_function.TestFeatureKeyFunction) ... ok test_duplicated_keys_longest (test_feature_key_function.TestFeatureKeyFunction) ... ok test_duplicated_keys_shortest (test_feature_key_function.TestFeatureKeyFunction) ... ok test_key_function_by_dictionary_get_key (test_feature_key_function.TestFeatureKeyFunction) ... ok test_key_function_by_fetch (test_feature_key_function.TestFeatureKeyFunction) ... ok test_keys (test_feature_key_function.TestFeatureKeyFunction) ... ok test_bounds_error (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_exceed (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_false (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_true (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_buffer_value (test_feature_read_ahead_buffer.TestFeatureBuffer) ... ok test_as_raw_false (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_false_error (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_true (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_true_error (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok test_as_raw_type_when_blen_lt_0 (test_feature_sequence_as_raw.TestFeatureSequenceAsRaw) ... ok Check get_seq with rc argument ... ok Fetch sequence by blocks ... ok test_key_function_by_dictionary_get_key (test_feature_split_char.TestFeatureSplitChar) ... ok test_key_function_by_fetch (test_feature_split_char.TestFeatureSplitChar) ... ok test_keys (test_feature_split_char.TestFeatureSplitChar) ... ok test_stop (test_feature_split_char.TestFeatureSplitChar) ... ok test_sequence_class.test_negate ... ok test_sequence_class.test_negate_metadata ... ok test_sequence_class.test_seq_invalid ... ok test_sequence_class.test_integer_index ... ok test_sequence_class.test_slice_index ... ok test_sequence_class.test_comp_invalid ... ok test_sequence_class.test_check_coordinates ... ok test_sequence_class.test_comp_valid ... ok test_sequence_class.test_comp_empty ... ok Name Stmts Miss Cover Missing --------------------------------------------------- pyfaidx/__init__.py 712 146 79% 14-15, 165, 170, 293, 336-347, 350, 360-367, 377-381, 389, 393, 418-419, 444, 447, 483, 485, 491, 545-546, 590, 597-600, 665-668, 711, 724, 726, 746, 761-772, 778, 803, 810, 850, 893-904, 927, 939, 943, 945, 947, 952, 1007, 1015-1016, 1019, 1054, 1061, 1083-1122, 1125, 1134-1154, 1198-1203, 1211-1212, 1250, 1258, 1264-1265 pyfaidx/cli.py 256 128 50% 31-36, 47-50, 78, 80, 91-106, 120-140, 181-182, 186, 190, 192, 195, 202-207, 211-217, 231, 234, 240-242, 251-253, 259, 268-281, 285, 289-290, 293-296, 311-318, 324-331, 337-345, 351-361, 364 --------------------------------------------------- TOTAL 968 274 72% ---------------------------------------------------------------------- Ran 139 tests in 54.166s OK (SKIP=36) make[1]: Leaving directory '/build/python-pyfaidx-0.5.5.2' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary LC_ALL=C.UTF-8 dh binary --with python2,python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx running install running build running build_py running install_lib creating /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx creating /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr creating /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib creating /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7 creating /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7/dist-packages creating /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7/dist-packages/pyfaidx copying /build/python-pyfaidx-0.5.5.2/.pybuild/cpython2_2.7_pyfaidx/build/pyfaidx/__init__.py -> /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7/dist-packages/pyfaidx copying /build/python-pyfaidx-0.5.5.2/.pybuild/cpython2_2.7_pyfaidx/build/pyfaidx/cli.py -> /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7/dist-packages/pyfaidx byte-compiling /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7/dist-packages/pyfaidx/__init__.py to __init__.pyc byte-compiling /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7/dist-packages/pyfaidx/cli.py to cli.pyc running install_egg_info running egg_info creating pyfaidx.egg-info writing requirements to pyfaidx.egg-info/requires.txt writing pyfaidx.egg-info/PKG-INFO writing top-level names to pyfaidx.egg-info/top_level.txt writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' Copying pyfaidx.egg-info to /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/lib/python2.7/dist-packages/pyfaidx-0.5.5.2.egg-info Skipping SOURCES.txt running install_scripts Installing faidx script to /build/python-pyfaidx-0.5.5.2/debian/python-pyfaidx/usr/bin I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx running install running build running build_py running install_lib creating /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx creating /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr creating /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib creating /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7 creating /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7/dist-packages creating /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7/dist-packages/pyfaidx copying /build/python-pyfaidx-0.5.5.2/.pybuild/cpython3_3.7_pyfaidx/build/pyfaidx/__init__.py -> /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7/dist-packages/pyfaidx copying /build/python-pyfaidx-0.5.5.2/.pybuild/cpython3_3.7_pyfaidx/build/pyfaidx/cli.py -> /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7/dist-packages/pyfaidx byte-compiling /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7/dist-packages/pyfaidx/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7/dist-packages/pyfaidx/cli.py to cli.cpython-37.pyc running install_egg_info running egg_info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' Copying pyfaidx.egg-info to /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/lib/python3.7/dist-packages/pyfaidx-0.5.5.2.egg-info Skipping SOURCES.txt running install_scripts Installing faidx script to /build/python-pyfaidx-0.5.5.2/debian/python3-pyfaidx/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/python-pyfaidx-0.5.5.2' dh_install # remove duplilcated wrapper script from Python2 package rm -rf debian/python-pyfaidx/usr/bin make[1]: Leaving directory '/build/python-pyfaidx-0.5.5.2' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/python-pyfaidx-0.5.5.2' dh_compress --exclude=gz.tbi make[1]: Leaving directory '/build/python-pyfaidx-0.5.5.2' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pyfaidx: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pyfaidx: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyfaidx' in '../python3-pyfaidx_0.5.5.2-1_all.deb'. dpkg-deb: building package 'python-pyfaidx-examples' in '../python-pyfaidx-examples_0.5.5.2-1_all.deb'. dpkg-deb: building package 'python-pyfaidx' in '../python-pyfaidx_0.5.5.2-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pyfaidx_0.5.5.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4541 and its subdirectories I: Current time: Thu Dec 9 18:36:16 -12 2021 I: pbuilder-time-stamp: 1639118176 Sat Nov 7 00:13:19 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink12-arm64.debian.net. Sat Nov 7 00:13:19 UTC 2020 I: Preparing to do remote build '2' on codethink12-arm64.debian.net. Sat Nov 7 00:17:03 UTC 2020 I: Deleting $TMPDIR on codethink12-arm64.debian.net. Sat Nov 7 00:17:05 UTC 2020 I: python-pyfaidx_0.5.5.2-1_arm64.changes: Format: 1.8 Date: Sat, 27 Oct 2018 07:11:40 +0200 Source: python-pyfaidx Binary: python-pyfaidx python-pyfaidx-examples python3-pyfaidx Architecture: all Version: 0.5.5.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-pyfaidx - efficient random access to fasta subsequences for Python python-pyfaidx-examples - example data for efficient random access to fasta subsequences fo python3-pyfaidx - efficient random access to fasta subsequences for Python 3 Closes: 911874 Changes: python-pyfaidx (0.5.5.2-1) unstable; urgency=medium . * New upstream version Closes: #911874 * Standards-Version: 4.2.1 * Secure URI in copyright format Checksums-Sha1: 008b3a71685cf52e29234c3946e6b02785c7f39d 47236 python-pyfaidx-examples_0.5.5.2-1_all.deb 23243f0c1a6d3a3e117b23ac4751449c7e49ad8c 23876 python-pyfaidx_0.5.5.2-1_all.deb 0951fe90249db92182b4543c38bebab5baa274ad 6443 python-pyfaidx_0.5.5.2-1_arm64.buildinfo fa9ee33a6c47c9527a44af95b9df6cf0ce067cf7 25312 python3-pyfaidx_0.5.5.2-1_all.deb Checksums-Sha256: c48f22806a809066b46ec427d5e53a921b5d3a0da128d8e007e39b79edc451b6 47236 python-pyfaidx-examples_0.5.5.2-1_all.deb 89e8dbc277eebd2631525847797d4b6c50d25d9a5ed9395845d6840e64bdc77e 23876 python-pyfaidx_0.5.5.2-1_all.deb 00ec5847cd04c65224eb579e7ad30b1f0133b9ba2bfc1866a19170b025cc3c32 6443 python-pyfaidx_0.5.5.2-1_arm64.buildinfo 82e91dbcc853218eeedab01676acf6cbfc522af9e25c594ee48915ce51822e89 25312 python3-pyfaidx_0.5.5.2-1_all.deb Files: 06b717233f046807d20135169e4dd272 47236 python optional python-pyfaidx-examples_0.5.5.2-1_all.deb 1adf9affb20d4390f650bc160ef32a4f 23876 python optional python-pyfaidx_0.5.5.2-1_all.deb ea64a61040413f7a7804fed203747b24 6443 python optional python-pyfaidx_0.5.5.2-1_arm64.buildinfo 9d5720ef6d0c722d99579cf109726d13 25312 python optional python3-pyfaidx_0.5.5.2-1_all.deb Sat Nov 7 00:17:06 UTC 2020 I: diffoscope 161 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.35CbtLvKN7/python-pyfaidx_0.5.5.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.35CbtLvKN7/python-pyfaidx_0.5.5.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.35CbtLvKN7/python-pyfaidx_0.5.5.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.35CbtLvKN7/b1/python-pyfaidx_0.5.5.2-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.35CbtLvKN7/b2/python-pyfaidx_0.5.5.2-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.430s) 0.430s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.029s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Nov 7 00:17:08 UTC 2020 I: diffoscope 161 found no differences in the changes files, and a .buildinfo file also exists. Sat Nov 7 00:17:08 UTC 2020 I: python-pyfaidx from buster built successfully and reproducibly on arm64. Sat Nov 7 00:17:09 UTC 2020 I: Submitting .buildinfo files to external archives: Sat Nov 7 00:17:09 UTC 2020 I: Submitting 8.0K b1/python-pyfaidx_0.5.5.2-1_arm64.buildinfo.asc Sat Nov 7 00:17:10 UTC 2020 I: Submitting 8.0K b2/python-pyfaidx_0.5.5.2-1_arm64.buildinfo.asc Sat Nov 7 00:17:11 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Nov 7 00:17:11 UTC 2020 I: Done submitting .buildinfo files. Sat Nov 7 00:17:11 UTC 2020 I: Removing signed python-pyfaidx_0.5.5.2-1_arm64.buildinfo.asc files: removed './b1/python-pyfaidx_0.5.5.2-1_arm64.buildinfo.asc' removed './b2/python-pyfaidx_0.5.5.2-1_arm64.buildinfo.asc'