Tue Aug 4 00:00:02 UTC 2020 I: starting to build plip/buster/arm64 on jenkins on '2020-08-03 23:59' Tue Aug 4 00:00:02 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/5358/console.log Tue Aug 4 00:00:02 UTC 2020 I: Downloading source for buster/plip=1.4.3~b+dfsg-2 --2020-08-04 00:00:02-- http://deb.debian.org/debian/pool/main/p/plip/plip_1.4.3~b+dfsg-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2098 (2.0K) Saving to: ‘plip_1.4.3~b+dfsg-2.dsc’ 0K .. 100% 320M=0s 2020-08-04 00:00:02 (320 MB/s) - ‘plip_1.4.3~b+dfsg-2.dsc’ saved [2098/2098] Tue Aug 4 00:00:02 UTC 2020 I: plip_1.4.3~b+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: plip Binary: plip Architecture: all Version: 1.4.3~b+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Mestiashvili Homepage: https://projects.biotec.tu-dresden.de/plip-web/plip/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/plip Vcs-Git: https://salsa.debian.org/med-team/plip.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11), dh-python, help2man, python-all, python-lxml, python-numpy, python-openbabel, python-setuptools, python-future Package-List: plip deb python optional arch=all Checksums-Sha1: af49f834452721513253bd3653dba0614129200e 75444 plip_1.4.3~b+dfsg.orig.tar.xz d3a580374c408ed8c7ba9e09bb89392ab7b0085f 4152 plip_1.4.3~b+dfsg-2.debian.tar.xz Checksums-Sha256: e9e277c8a87935ac3f9f20790ec1132ac274d55e255a6a3fd0061ee200382689 75444 plip_1.4.3~b+dfsg.orig.tar.xz 039ddc0bee8629c1881346b6acf0bd3e91406767d2ecc41d22ed79fad16303b5 4152 plip_1.4.3~b+dfsg-2.debian.tar.xz Files: f4d8b2d2b4ddd0da5b080bfbad42ee32 75444 plip_1.4.3~b+dfsg.orig.tar.xz 0064bd9977b4e26eaf9e97db0bd3bab1 4152 plip_1.4.3~b+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAlvHBlETHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0bF9D/9F8hTyZvhkYgZNYoLC5q/uPSC+EhXZ 7qiAS9wDZsrLcXI0vwUHy0E7SFX0bmrIwqxmMoRMkCB31ZhtX4FJWDcEnv/Jv7YB ptV2lo0+DQfZgEtGhwriAizRiHvLtnCGkcSTjPQMdgR4DQOgUG3wLz42g0OVJH1O j9k13kRmfouyHwnBcvywQmmzw6icSCj5Zj4UGM7tu9858JfNdJT3fg5fDF3WnnBh aMnJjyJURnOOYG1PRBo1twn22anMXp4G/Q/Gm2g8v+pZTX2VFBuyqiC6Usc7d4N+ JdHobdKmsR103YGyVa1LeN8uMyBjF/8w/vNnQCfmurLpUJ4TKicDG2y+CnIVVcpA sTe7LBOUbeupEGvpyJI6V+Fgmq5ZtJnmKtFE9ltxibvkqWkyyvNCKVEgOr8gAxZW 1sazsHB6m404IRgBCM/mW+115OF1ZmKQnsrHeWPYTrgCG3cnRdLvAvhbizNWRjg5 DHRSSXkLEmEC+juHoWtemviNSc8S/fum4Sf3q7gGW/FODrzGiOeuufAeRzyXW2iS 4+IlmNfakxEzShqgagA5ZR7vGuSk3Vrdj2HmpbaBAQZ5Qbx/adfijxatKtMeFFM+ M0G2e9faki1gRl1xOYCSIIHw2z7dJ1EMIA4YITxQzPrQpViHAfGNQQlx4HZZUAhE GnyYAbNLjNYNiw== =kAiB -----END PGP SIGNATURE----- Tue Aug 4 00:00:02 UTC 2020 I: Checking whether the package is not for us Tue Aug 4 00:00:02 UTC 2020 I: Starting 1st build on remote node codethink-sled10-arm64.debian.net. Tue Aug 4 00:00:02 UTC 2020 I: Preparing to do remote build '1' on codethink-sled10-arm64.debian.net. Tue Aug 4 00:01:13 UTC 2020 I: Deleting $TMPDIR on codethink-sled10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 3 12:00:10 -12 2020 I: pbuilder-time-stamp: 1596499210 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plip_1.4.3~b+dfsg-2.dsc] I: copying [./plip_1.4.3~b+dfsg.orig.tar.xz] I: copying [./plip_1.4.3~b+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 16 21:52:17 2018 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plip_1.4.3~b+dfsg-2.dsc dpkg-source: info: extracting plip in plip-1.4.3~b+dfsg dpkg-source: info: unpacking plip_1.4.3~b+dfsg.orig.tar.xz dpkg-source: info: unpacking plip_1.4.3~b+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executableIsForPython2Not3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/976/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='976' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.K0IysuLoJq/pbuilderrc_w0Ng --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.K0IysuLoJq/b1 --logfile b1/build.log plip_1.4.3~b+dfsg-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled10-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 2 20:25 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), dh-python, help2man, python-all, python-lxml, python-numpy, python-openbabel, python-setuptools, python-future dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python-all; however: Package python-all is not installed. pbuilder-satisfydepends-dummy depends on python-lxml; however: Package python-lxml is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-openbabel; however: Package python-openbabel is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-future; however: Package python-future is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcairo2{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libopenbabel5{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libxslt1.1{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-configparser{a} python-future{a} python-lxml{a} python-minimal{a} python-numpy{a} python-openbabel{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx python-bs4 python-html5lib shared-mime-info wget xdg-user-dirs 0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 44.9 MB of archives. After unpacking 176 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 liblocale-gettext-perl arm64 1.07-3+b4 [18.8 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 fontconfig-config all 2.13.1-2 [280 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 help2man arm64 1.47.8 [177 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libx11-data all 2:1.6.7-1 [298 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libopenbabel5 arm64 2.4.1+dfsg-3 [2746 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libxslt1.1 arm64 1.1.32-2.2~deb10u1 [225 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 89 http://deb.debian.org/debian buster/main arm64 python-configparser all 3.5.0b2-1 [59.2 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 python-future all 0.16.0-1 [348 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 python-lxml arm64 4.3.2-1 [996 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 python-openbabel arm64 2.4.1+dfsg-3 [616 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Fetched 44.9 MB in 5s (9565 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../45-libx11-6_2%3a1.6.7-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.6.7-1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../46-libxcb-render0_1.13.1-2_arm64.deb ... Unpacking libxcb-render0:arm64 (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../47-libxcb-shm0_1.13.1-2_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.13.1-2) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../48-libxext6_2%3a1.3.3-1+b2_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1+b2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../49-libxrender1_1%3a0.9.10-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../50-libcairo2_1.16.0-4_arm64.deb ... Unpacking libcairo2:arm64 (1.16.0-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../51-libjs-jquery_3.3.1~dfsg-3_all.deb ... Unpacking libjs-jquery (3.3.1~dfsg-3) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../52-libjs-underscore_1.9.1~dfsg-1_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../53-libjs-sphinxdoc_1.8.4-1_all.deb ... Unpacking libjs-sphinxdoc (1.8.4-1) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../54-liblapack3_3.8.0-2_arm64.deb ... Unpacking liblapack3:arm64 (3.8.0-2) ... Selecting previously unselected package libopenbabel5. Preparing to unpack .../55-libopenbabel5_2.4.1+dfsg-3_arm64.deb ... Unpacking libopenbabel5 (2.4.1+dfsg-3) ... Selecting previously unselected package libpython2.7:arm64. Preparing to unpack .../56-libpython2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libxslt1.1:arm64. Preparing to unpack .../57-libxslt1.1_1.1.32-2.2~deb10u1_arm64.deb ... Unpacking libxslt1.1:arm64 (1.1.32-2.2~deb10u1) ... Selecting previously unselected package python-all. Preparing to unpack .../58-python-all_2.7.16-1_arm64.deb ... Unpacking python-all (2.7.16-1) ... Selecting previously unselected package python-configparser. Preparing to unpack .../59-python-configparser_3.5.0b2-1_all.deb ... Unpacking python-configparser (3.5.0b2-1) ... Selecting previously unselected package python-future. Preparing to unpack .../60-python-future_0.16.0-1_all.deb ... Unpacking python-future (0.16.0-1) ... Selecting previously unselected package python-lxml:arm64. Preparing to unpack .../61-python-lxml_4.3.2-1_arm64.deb ... Unpacking python-lxml:arm64 (4.3.2-1) ... Selecting previously unselected package python-pkg-resources. 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Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libpng16-16:arm64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Setting up libxcb1:arm64 (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up help2man (1.47.8) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libxslt1.1:arm64 (1.1.32-2.2~deb10u1) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:arm64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libfontconfig1:arm64 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python-lxml:arm64 (4.3.2-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-all (2.7.16-1) ... Setting up libcairo2:arm64 (1.16.0-4) ... Setting up python-configparser (3.5.0b2-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-future (0.16.0-1) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python-numpy (1:1.16.2-1) ... Setting up libopenbabel5 (2.4.1+dfsg-3) ... Setting up python-openbabel (2.4.1+dfsg-3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/plip-1.4.3~b+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package plip dpkg-buildpackage: info: source version 1.4.3~b+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python2 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip copying plip/plipcmd.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip copying plip/__init__.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip creating /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/webservices.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/visualize.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/supplemental.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/report.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/pymolplip.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/preparation.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/plipxml.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/plipremote.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/mp.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/detection.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/config.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/chimeraplip.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules copying plip/modules/__init__.py -> /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules running build_scripts creating build creating build/scripts-2.7 copying and adjusting plip/plipcmd.py -> build/scripts-2.7 changing mode of build/scripts-2.7/plipcmd.py from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/plip-1.4.3~b+dfsg' debian/tests/special-cases make[1]: Leaving directory '/build/plip-1.4.3~b+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/plip-1.4.3~b+dfsg' dh_auto_install I: pybuild base:217: /usr/bin/python setup.py install --root '/build/plip-1.4.3~b+dfsg/debian/plip' running install running build running build_py running build_scripts running install_lib creating /build/plip-1.4.3~b+dfsg/debian/plip/usr creating /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib creating /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7 creating /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages creating /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip creating /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/__init__.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/chimeraplip.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/config.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/detection.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/mp.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/plipremote.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/plipxml.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/preparation.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/pymolplip.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/report.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/supplemental.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/visualize.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/modules/webservices.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/__init__.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip copying /build/plip-1.4.3~b+dfsg/.pybuild/cpython2_2.7_plip/build/plip/plipcmd.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/__init__.py to __init__.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/chimeraplip.py to chimeraplip.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/config.py to config.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/detection.py to detection.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/mp.py to mp.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/plipremote.py to plipremote.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/plipxml.py to plipxml.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/preparation.py to preparation.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/pymolplip.py to pymolplip.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/report.py to report.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/supplemental.py to supplemental.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/visualize.py to visualize.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/modules/webservices.py to webservices.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/__init__.py to __init__.pyc byte-compiling /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip/plipcmd.py to plipcmd.pyc running install_egg_info running egg_info creating plip.egg-info writing requirements to plip.egg-info/requires.txt writing plip.egg-info/PKG-INFO writing top-level names to plip.egg-info/top_level.txt writing dependency_links to plip.egg-info/dependency_links.txt writing manifest file 'plip.egg-info/SOURCES.txt' reading manifest file 'plip.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'plip.egg-info/SOURCES.txt' Copying plip.egg-info to /build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/plip-1.4.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/plip-1.4.3~b+dfsg/debian/plip/usr/bin copying build/scripts-2.7/plipcmd.py -> /build/plip-1.4.3~b+dfsg/debian/plip/usr/bin changing mode of /build/plip-1.4.3~b+dfsg/debian/plip/usr/bin/plipcmd.py to 755 mv /build/plip-1.4.3~b+dfsg/debian/plip/usr/bin/plipcmd.py \ /build/plip-1.4.3~b+dfsg/debian/plip/usr/bin/plipcmd mkdir -p /build/plip-1.4.3~b+dfsg/debian/plip/usr/share/man/man1 export PYTHONPATH=/build/plip-1.4.3~b+dfsg/debian/plip/usr/lib/python2.7/dist-packages/:\ /build/plip-1.4.3~b+dfsg/plip/modules; \ help2man --no-info --no-discard-stderr --version-string="1.4.3~b+dfsg-2" --name='Protein-Ligand Interaction Profiler (PLIP)' \ /build/plip-1.4.3~b+dfsg/debian/plip/usr/bin/plipcmd > /build/plip-1.4.3~b+dfsg/debian/plip/usr/share/man/man1/plipcmd.1 make[1]: Leaving directory '/build/plip-1.4.3~b+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild I: dh_python2 tools:114: replacing shebang in debian/plip/usr/bin/plipcmd I: dh_python2 pydist:228: Cannot find package that provides openbabel. Please add package that provides it to Build-Depends or add "openbabel python-openbabel" line to debian/pydist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package plip: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'plip' in '../plip_1.4.3~b+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../plip_1.4.3~b+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/976 and its subdirectories I: Current time: Mon Aug 3 12:01:12 -12 2020 I: pbuilder-time-stamp: 1596499272 Tue Aug 4 00:01:14 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled13-arm64.debian.net. Tue Aug 4 00:01:14 UTC 2020 I: Preparing to do remote build '2' on codethink-sled13-arm64.debian.net. Tue Aug 4 00:02:27 UTC 2020 I: Deleting $TMPDIR on codethink-sled13-arm64.debian.net. Tue Aug 4 00:02:28 UTC 2020 I: plip_1.4.3~b+dfsg-2_arm64.changes: Format: 1.8 Date: Tue, 16 Oct 2018 16:21:48 +0200 Source: plip Binary: plip Architecture: all Version: 1.4.3~b+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: plip - fully automated protein-ligand interaction profiler Changes: plip (1.4.3~b+dfsg-2) unstable; urgency=medium . * Team upload. . * Hopefully fixed d/watch - who knows :o) * Executable only works with python2, not 3 * Explicitly adding python-openbabel as a dependency to the binary package, which was omitted by the automatisms in place. Checksums-Sha1: 640ab4600d377214f637720cd8023f33f361eff5 69124 plip_1.4.3~b+dfsg-2_all.deb cc67fd050a18d029381d92054686fcef1a5b3a37 6242 plip_1.4.3~b+dfsg-2_arm64.buildinfo Checksums-Sha256: 4eae7d6ec1172b4cd90577f540d413924a7b9707f736f55b53e4d0358fa01905 69124 plip_1.4.3~b+dfsg-2_all.deb 53982d4e0e6c03f501c69f1c40b77d7de52f00e220fe491d8e48fdf023e2cc2a 6242 plip_1.4.3~b+dfsg-2_arm64.buildinfo Files: adca8e24ce1c186dddfa789d9456b74c 69124 python optional plip_1.4.3~b+dfsg-2_all.deb 076a5c54163393135eb8f15e6b527da0 6242 python optional plip_1.4.3~b+dfsg-2_arm64.buildinfo Tue Aug 4 00:02:29 UTC 2020 I: diffoscope 154 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.K0IysuLoJq/plip_1.4.3~b+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.K0IysuLoJq/plip_1.4.3~b+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.K0IysuLoJq/plip_1.4.3~b+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.K0IysuLoJq/b1/plip_1.4.3~b+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.K0IysuLoJq/b2/plip_1.4.3~b+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.234s) 0.234s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 4 00:02:31 UTC 2020 I: diffoscope 154 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 4 00:02:31 UTC 2020 I: plip from buster built successfully and reproducibly on arm64. Tue Aug 4 00:02:32 UTC 2020 I: Submitting .buildinfo files to external archives: Tue Aug 4 00:02:32 UTC 2020 I: Submitting 8.0K b1/plip_1.4.3~b+dfsg-2_arm64.buildinfo.asc Tue Aug 4 00:02:33 UTC 2020 I: Submitting 8.0K b2/plip_1.4.3~b+dfsg-2_arm64.buildinfo.asc Tue Aug 4 00:02:34 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 4 00:02:34 UTC 2020 I: Done submitting .buildinfo files. Tue Aug 4 00:02:34 UTC 2020 I: Removing signed plip_1.4.3~b+dfsg-2_arm64.buildinfo.asc files: removed './b1/plip_1.4.3~b+dfsg-2_arm64.buildinfo.asc' removed './b2/plip_1.4.3~b+dfsg-2_arm64.buildinfo.asc'