Fri Aug 14 11:10:09 UTC 2020 I: starting to build pbdagcon/buster/arm64 on jenkins on '2020-08-14 11:09' Fri Aug 14 11:10:09 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_28/1638/console.log Fri Aug 14 11:10:09 UTC 2020 I: Downloading source for buster/pbdagcon=0.3+git20161121.0000000+ds-1.1 --2020-08-14 11:10:09-- http://deb.debian.org/debian/pool/main/p/pbdagcon/pbdagcon_0.3+git20161121.0000000+ds-1.1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2209 (2.2K) Saving to: ‘pbdagcon_0.3+git20161121.0000000+ds-1.1.dsc’ 0K .. 100% 192M=0s 2020-08-14 11:10:09 (192 MB/s) - ‘pbdagcon_0.3+git20161121.0000000+ds-1.1.dsc’ saved [2209/2209] Fri Aug 14 11:10:09 UTC 2020 I: pbdagcon_0.3+git20161121.0000000+ds-1.1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbdagcon Binary: pbdagcon Architecture: any Version: 0.3+git20161121.0000000+ds-1.1 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://github.com/PacificBiosciences/pbdagcon Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/pbdagcon Vcs-Git: https://salsa.debian.org/med-team/pbdagcon.git Build-Depends: debhelper (>= 12~), python, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbdata-dev, googletest Package-List: pbdagcon deb science optional arch=any Checksums-Sha1: 8dc13b1a5104ff9ef7f630285f7dbd4b891967af 256458 pbdagcon_0.3+git20161121.0000000+ds.orig.tar.gz 5b7b51a92a413cdce7c8727dbb90240c06c4a6a8 5956 pbdagcon_0.3+git20161121.0000000+ds-1.1.debian.tar.xz Checksums-Sha256: 897b6210e2abf6d15ba7ad9718aa21527bcbd7540e307882e1688abddd8eca17 256458 pbdagcon_0.3+git20161121.0000000+ds.orig.tar.gz d4d15558d98febb159e6a483245c399793639a4a042de1e091cfb8a533d3e98f 5956 pbdagcon_0.3+git20161121.0000000+ds-1.1.debian.tar.xz Files: b48d97cf670cab6322024e4b9e3949ec 256458 pbdagcon_0.3+git20161121.0000000+ds.orig.tar.gz c9983c223cfbf886e821cc6886b7e339 5956 pbdagcon_0.3+git20161121.0000000+ds-1.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEOvp1f6xuoR0v9F3wiNJCh6LYmLEFAlxai2oACgkQiNJCh6LY mLGeTA/7BK4RMqtljm+YnkdWqclizW7rRqTS/YvtYGqRUtdo2/0nt47QrBBjeJGE lgBfSSG1KTRP0LaFeJ91FWh1H2/Ix7a2Fh+YTRM5YFTnY/iAT6hOBcMZYsY27iFZ /98JSmZap2tSQxziyPnzTghAQm4HBVF2x5VCFPWBz8DrhtRk7BRFe+4nkBxLA23c aaV7FWjDgDuSxOfS9kBXyqmm/E3XDhJPuEHr632rR27yGyQr4blOxrYKw9NxVdPU 7xjz1A/rgf9R/OPBOVjkI0KrU5ZuErSZ7CshCtCiUmO8eSOXELTBB+/QNIdsCy8k 4Sc6uyMMHvyL2BxXlDXBIN5qL6x1O258vxtfsk4/I0KQXC0ExqGrKE6jnwLJVVS9 Zv0h0SgM0oeIT8Zec6omYbROuXVrnGANF3S4umUXOsTU572G2Q+8G/WmBbMEboUs z5xtMqJhuLJLz6uq08blMn7tm3ioAj/J1Npkv8ugoPA4GeYXpkqcvZGVZ6Ry5XFn D21wwYCg6BuWOuh5LfwzxcggcmL/nNVhlEaTNOqZF5r+cReGUgRAuV9keUnsmWWH Pi4ifmWsafPiskVZLflXurMQYig9isqHpRXmZBHwImaFl9JGn7O8Ly9OKOjFuLOh gUqHGGueS6yf9fdcpkW0e1g5pTPAKVLPx3MJpUDvTUJaEzNSOqw= =3jQf -----END PGP SIGNATURE----- Fri Aug 14 11:10:09 UTC 2020 I: Checking whether the package is not for us Fri Aug 14 11:10:09 UTC 2020 I: Starting 1st build on remote node codethink-sled15-arm64.debian.net. Fri Aug 14 11:10:09 UTC 2020 I: Preparing to do remote build '1' on codethink-sled15-arm64.debian.net. Fri Aug 14 11:13:17 UTC 2020 I: Deleting $TMPDIR on codethink-sled15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 16 05:33:14 -12 2021 I: pbuilder-time-stamp: 1631813594 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbdagcon_0.3+git20161121.0000000+ds-1.1.dsc] I: copying [./pbdagcon_0.3+git20161121.0000000+ds.orig.tar.gz] I: copying [./pbdagcon_0.3+git20161121.0000000+ds-1.1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Feb 5 19:23:22 2019 -12 gpgv: using RSA key 3AFA757FAC6EA11D2FF45DF088D24287A2D898B1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pbdagcon_0.3+git20161121.0000000+ds-1.1.dsc dpkg-source: info: extracting pbdagcon in pbdagcon-0.3+git20161121.0000000+ds dpkg-source: info: unpacking pbdagcon_0.3+git20161121.0000000+ds.orig.tar.gz dpkg-source: info: unpacking pbdagcon_0.3+git20161121.0000000+ds-1.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler-flags.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20534/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20534' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.nS3pPfzxsu/pbuilderrc_PfkH --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.nS3pPfzxsu/b1 --logfile b1/build.log pbdagcon_0.3+git20161121.0000000+ds-1.1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled15-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 15 02:48 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/20534/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), python, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbdata-dev, googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on python; however: Package python is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbseq-dev; however: Package libpbseq-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbbam-dev (>= 0.18.0+dfsg-1~); however: Package libpbbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbdata-dev; however: Package libpbdata-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblasr{a} libblasr-dev{a} libboost-dev{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libhts-dev{a} libhts2{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpbbam-dev{a} libpbbam0.19.0{a} libpbdata{a} libpbdata-dev{a} libpbihdf{a} libpbihdf-dev{a} libpbseq-dev{a} libpipeline1{a} libpsl5{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl-dev{a} libssl1.1{a} libsz2{a} libtclap-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 50.9 MB of archives. After unpacking 290 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 googletest arm64 1.8.1-3 [903 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 hdf5-helpers arm64 1.10.4+repack-10 [35.2 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libaec0 arm64 1.0.2-1 [18.8 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libsz2 arm64 1.0.2-1 [6456 B] Get: 53 http://deb.debian.org/debian buster/main arm64 libaec-dev arm64 1.0.2-1 [17.1 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libcurl3-gnutls arm64 7.64.0-4+deb10u1 [310 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libdeflate0 arm64 1.2-1 [51.4 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libhts2 arm64 1.9-11 [277 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libpbbam0.19.0 arm64 0.19.0+dfsg-4 [492 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libpbdata arm64 5.3.1+dfsg-2.1 [114 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libhdf5-103 arm64 1.10.4+repack-10 [1168 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libhdf5-cpp-103 arm64 1.10.4+repack-10 [132 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libpbihdf arm64 5.3.1+dfsg-2.1 [149 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libblasr arm64 5.3.1+dfsg-2.1 [850 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libpbdata-dev arm64 5.3.1+dfsg-2.1 [192 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libblasr-dev arm64 5.3.1+dfsg-2.1 [1681 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libboost1.67-dev arm64 1.67.0-13+deb10u1 [8388 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libboost-dev arm64 1.67.0.1 [3864 B] Get: 81 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo-dev arm64 1:1.5.2-2+b1 [186 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libhdf5-dev arm64 1.10.4+repack-10 [2683 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 liblzma-dev arm64 5.2.4-1 [209 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libhts-dev arm64 1.9-11 [4338 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libssl-dev arm64 1.1.1d-0+deb10u3 [1685 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libpbbam-dev arm64 0.19.0+dfsg-4 [93.3 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libpbihdf-dev arm64 5.3.1+dfsg-2.1 [253 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libpbseq-dev all 5.3.1+dfsg-2.1 [4612 B] Get: 92 http://deb.debian.org/debian buster/main arm64 libtclap-dev arm64 1.2.2-1 [139 kB] Fetched 50.9 MB in 3s (18.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20664 files and directories currently installed.) Preparing to unpack .../00-python_2.7.16-1_arm64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... 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Preparing to unpack .../15-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../16-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../17-libelf1_0.176-1.1_arm64.deb ... Unpacking libelf1:arm64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../18-dwz_0.12-3_arm64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../19-libglib2.0-0_2.58.3-2+deb10u2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:arm64. Preparing to unpack .../20-libicu63_63.1-6+deb10u1_arm64.deb ... Unpacking libicu63:arm64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../21-libxml2_2.9.4+dfsg1-7+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../22-libcroco3_0.6.12-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-3) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../23-libncurses6_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.19.8.1-9_arm64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package googletest:arm64. Preparing to unpack .../28-googletest_1.8.1-3_arm64.deb ... Unpacking googletest:arm64 (1.8.1-3) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../29-hdf5-helpers_1.10.4+repack-10_arm64.deb ... Unpacking hdf5-helpers (1.10.4+repack-10) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../30-libaec0_1.0.2-1_arm64.deb ... Unpacking libaec0:arm64 (1.0.2-1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../31-libsz2_1.0.2-1_arm64.deb ... Unpacking libsz2:arm64 (1.0.2-1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../32-libaec-dev_1.0.2-1_arm64.deb ... Unpacking libaec-dev:arm64 (1.0.2-1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../33-libkeyutils1_1.6-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6-6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../34-libkrb5support0_1.17-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../35-libk5crypto3_1.17-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../36-libkrb5-3_1.17-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../37-libgssapi-krb5-2_1.17-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../38-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../39-libsasl2-2_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../40-libldap-common_2.4.47+dfsg-3+deb10u2_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../41-libldap-2.4-2_2.4.47+dfsg-3+deb10u2_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../42-libnghttp2-14_1.36.0-2+deb10u1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../43-libpsl5_0.20.2-2_arm64.deb ... Unpacking libpsl5:arm64 (0.20.2-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../44-librtmp1_2.4+20151223.gitfa8646d.1-2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../45-libssh2-1_1.8.0-2.1_arm64.deb ... Unpacking libssh2-1:arm64 (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../46-libcurl3-gnutls_7.64.0-4+deb10u1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../47-libdeflate0_1.2-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.2-1) ... Selecting previously unselected package libhts2:arm64. Preparing to unpack .../48-libhts2_1.9-11_arm64.deb ... Unpacking libhts2:arm64 (1.9-11) ... Selecting previously unselected package libpbbam0.19.0:arm64. Preparing to unpack .../49-libpbbam0.19.0_0.19.0+dfsg-4_arm64.deb ... Unpacking libpbbam0.19.0:arm64 (0.19.0+dfsg-4) ... Selecting previously unselected package libpbdata:arm64. Preparing to unpack .../50-libpbdata_5.3.1+dfsg-2.1_arm64.deb ... Unpacking libpbdata:arm64 (5.3.1+dfsg-2.1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../51-libgfortran5_8.3.0-6_arm64.deb ... Unpacking libgfortran5:arm64 (8.3.0-6) ... Selecting previously unselected package libhdf5-103:arm64. Preparing to unpack .../52-libhdf5-103_1.10.4+repack-10_arm64.deb ... Unpacking libhdf5-103:arm64 (1.10.4+repack-10) ... Selecting previously unselected package libhdf5-cpp-103:arm64. Preparing to unpack .../53-libhdf5-cpp-103_1.10.4+repack-10_arm64.deb ... Unpacking libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Selecting previously unselected package libpbihdf:arm64. Preparing to unpack .../54-libpbihdf_5.3.1+dfsg-2.1_arm64.deb ... Unpacking libpbihdf:arm64 (5.3.1+dfsg-2.1) ... Selecting previously unselected package libblasr:arm64. Preparing to unpack .../55-libblasr_5.3.1+dfsg-2.1_arm64.deb ... Unpacking libblasr:arm64 (5.3.1+dfsg-2.1) ... Selecting previously unselected package libpbdata-dev:arm64. Preparing to unpack .../56-libpbdata-dev_5.3.1+dfsg-2.1_arm64.deb ... Unpacking libpbdata-dev:arm64 (5.3.1+dfsg-2.1) ... Selecting previously unselected package libblasr-dev:arm64. Preparing to unpack .../57-libblasr-dev_5.3.1+dfsg-2.1_arm64.deb ... Unpacking libblasr-dev:arm64 (5.3.1+dfsg-2.1) ... Selecting previously unselected package libboost1.67-dev:arm64. Preparing to unpack .../58-libboost1.67-dev_1.67.0-13+deb10u1_arm64.deb ... Unpacking libboost1.67-dev:arm64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../59-libboost-dev_1.67.0.1_arm64.deb ... Unpacking libboost-dev:arm64 (1.67.0.1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../60-zlib1g-dev_1%3a1.2.11.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... 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Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Setting up libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python (2.7.16-1) ... Setting up libhts2:arm64 (1.9-11) ... Setting up po-debconf (1.0.21) ... Setting up libhts-dev:arm64 (1.9-11) ... Setting up libpbbam0.19.0:arm64 (0.19.0+dfsg-4) ... Setting up libpbbam-dev (0.19.0+dfsg-4) ... Setting up libpbdata:arm64 (5.3.1+dfsg-2.1) ... Setting up libpbihdf:arm64 (5.3.1+dfsg-2.1) ... Setting up libpbdata-dev:arm64 (5.3.1+dfsg-2.1) ... Setting up libblasr:arm64 (5.3.1+dfsg-2.1) ... Setting up libblasr-dev:arm64 (5.3.1+dfsg-2.1) ... Setting up libpbihdf-dev:arm64 (5.3.1+dfsg-2.1) ... Setting up libpbseq-dev (5.3.1+dfsg-2.1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/pbdagcon-0.3+git20161121.0000000+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package pbdagcon dpkg-buildpackage: info: source version 0.3+git20161121.0000000+ds-1.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Adrian Bunk dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_auto_clean make -j8 clean make[1]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds' make -C src/cpp clean make[2]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds/src/cpp' rm -f *.d rm -f *.o rm -f pbdagcon rm -f dazcon make[2]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds/src/cpp' make -C test/cpp clean make[2]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds/test/cpp' rm -f .//*.o rm -f *.o rm -f test_* make[2]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds/test/cpp' make[1]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds' ./configure.py --shared uname -s uname='Linux' writing to '/build/pbdagcon-0.3+git20161121.0000000+ds/defines.mk' """ DALIGNER_INCLUDE ?= ${DALIGNER_SRC} DALIGNER_SRC ?= /build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER DAZZ_DB_INCLUDE ?= ${DAZZ_DB_SRC} DAZZ_DB_SRC ?= /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB GTEST_INCLUDE ?= /usr/src/googletest/googletest/include GTEST_SRC ?= /usr/src/googletest/googletest/src HDF5_LIB ?= /usr/lib/aarch64-linux-gnu/hdf5/serial HDF5_LIBFLAGS ?= -lhdf5_cpp -lhdf5 HTSLIB_LIBFLAGS ?= -lhts LIBBLASR_INCLUDE ?= /usr/include/pbseq/alignment LIBBLASR_LIBFLAGS ?= -lblasr LIBPBDATA_INCLUDE ?= /usr/include/pbseq/pbdata LIBPBDATA_LIBFLAGS ?= -lpbdata LIBPBIHDF_INCLUDE ?= /usr/include/pbseq/hdf LIBPBIHDF_LIBFLAGS ?= -lpbihdf PBBAM_INCLUDE ?= /usr/include/pbseq PBBAM_LIBFLAGS ?= -lpbbam PTHREAD_LIBFLAGS ?= -lpthread ZLIB_LIBFLAGS ?= -lz LDLIBS+=-lrt """ make[1]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds' dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds' make -C src/cpp make[2]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds/src/cpp' g++ -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o Alignment.o Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o AlnGraphBoost.o AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o BlasrM5AlnProvider.o BlasrM5AlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o main.o main.cpp g++ -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o SimpleAligner.o SimpleAligner.cpp cc -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DB.o /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c cc -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o QV.o /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/QV.c cc -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o align.o /build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER/align.c /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c: In function 'Load_QVs': /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c:888:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(istub,DB_NFILE,&nfiles); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c:892:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c:897:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DazAlnProvider.o DazAlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o dazcon.o dazcon.cpp g++ -o dazcon Alignment.o AlnGraphBoost.o DB.o QV.o align.o DazAlnProvider.o dazcon.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbdata -lpbihdf -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o pbdagcon Alignment.o AlnGraphBoost.o BlasrM5AlnProvider.o main.o SimpleAligner.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbdata -lpbihdf -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread make[2]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds/src/cpp' make[1]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds' dh_auto_test make -j8 check make[1]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds' make -C src/cpp make[2]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds/src/cpp' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds/src/cpp' make -C test/cpp make[2]: Entering directory '/build/pbdagcon-0.3+git20161121.0000000+ds/test/cpp' g++ -O3 -std=c++11 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest-all.o /usr/src/googletest/googletest/src/gtest-all.cc g++ -O3 -std=c++11 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest_main.o /usr/src/googletest/googletest/src/gtest_main.cc g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoost.o .//../../src/cpp/AlnGraphBoost.cpp g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o Alignment.o .//../../src/cpp/Alignment.cpp g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAligner.o .//../../src/cpp/SimpleAligner.cpp g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoostTest.o AlnGraphBoostTest.cpp mkdir xml g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlignmentTest.o AlignmentTest.cpp g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAlignerTest.o SimpleAlignerTest.cpp cc -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DB.o /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c: In function 'Load_QVs': /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c:888:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(istub,DB_NFILE,&nfiles); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c:892:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/DB.c:897:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o QV.o /build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB/QV.c cc -g -O2 -ffile-prefix-map=/build/pbdagcon-0.3+git20161121.0000000+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o align.o /build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER/align.c g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DazAlnProvider.o .//../../src/cpp/DazAlnProvider.cpp g++ -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o TargetHitTest.o TargetHitTest.cpp g++ -o test-alngraph gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlnGraphBoostTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbdata -lpbihdf -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-alignment gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlignmentTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbdata -lpbihdf -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-simple_aligner gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o SimpleAlignerTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbdata -lpbihdf -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-target_hit gtest-all.o gtest_main.o DB.o QV.o align.o Alignment.o DazAlnProvider.o TargetHitTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbdata -lpbihdf -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial:::: PBDAGCON_TEST_DATA_DIR=./ ./test-target_hit --gtest_output=xml:xml/test-target_hit.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 3 tests from 1 test case. [----------] Global test environment set-up. [----------] 3 tests from TargetHitTest [ RUN ] TargetHitTest.single_overlap_perfect [ OK ] TargetHitTest.single_overlap_perfect (0 ms) [ RUN ] TargetHitTest.single_overlap_inaccurate [ OK ] TargetHitTest.single_overlap_inaccurate (0 ms) [ RUN ] TargetHitTest.multi_overlap_inaccurate [ OK ] TargetHitTest.multi_overlap_inaccurate (0 ms) [----------] 3 tests from TargetHitTest (0 ms total) [----------] Global test environment tear-down [==========] 3 tests from 1 test case ran. (0 ms total) [ PASSED ] 3 tests. LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial:::: PBDAGCON_TEST_DATA_DIR=./ ./test-simple_aligner --gtest_output=xml:xml/test-simple_aligner.xml LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial:::: PBDAGCON_TEST_DATA_DIR=./ ./test-alngraph --gtest_output=xml:xml/test-alngraph.xml LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial:::: PBDAGCON_TEST_DATA_DIR=./ ./test-alignment --gtest_output=xml:xml/test-alignment.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 1 test from 1 test case. [----------] Global test environment set-up. [----------] 1 test from SimpleAligner [ RUN ] SimpleAligner.align [ OK ] SimpleAligner.align (1 ms) [----------] 1 test from SimpleAligner (1 ms total) [----------] Global test environment tear-down [==========] 1 test from 1 test case ran. (1 ms total) [ PASSED ] 1 test. Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 2 tests from 1 test case. [----------] Global test environment set-up. [----------] 2 tests from AlnGraphBoostTest [ RUN ] AlnGraphBoostTest.RawConsensus [ OK ] AlnGraphBoostTest.RawConsensus (0 ms) [ RUN ] AlnGraphBoostTest.DanglingNodes [ OK ] AlnGraphBoostTest.DanglingNodes (0 ms) [----------] 2 tests from AlnGraphBoostTest (0 ms total) [----------] Global test environment tear-down [==========] 2 tests from 1 test case ran. (0 ms total) [ PASSED ] 2 tests. Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 4 tests from 1 test case. [----------] Global test environment set-up. [----------] 4 tests from Alignment [ RUN ] Alignment.Normalize [ OK ] Alignment.Normalize (0 ms) [ RUN ] Alignment.ParseBasic [ OK ] Alignment.ParseBasic (0 ms) [ RUN ] Alignment.ParseQuery [ OK ] Alignment.ParseQuery (0 ms) [ RUN ] Alignment.Trim [ OK ] Alignment.Trim (0 ms) [----------] 4 tests from Alignment (0 ms total) [----------] Global test environment tear-down [==========] 4 tests from 1 test case ran. (0 ms total) [ PASSED ] 4 tests. make[2]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds/test/cpp' make[1]: Leaving directory '/build/pbdagcon-0.3+git20161121.0000000+ds' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: can't extract name and version from library name 'libblasr.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libblasr.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbdata.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbdata.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbihdf.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbihdf.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libblasr.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libblasr.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbdata.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbdata.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbihdf.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libpbihdf.so' dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pbdagcon/usr/bin/dazcon debian/pbdagcon/usr/bin/pbdagcon were not linked against libhdf5_cpp.so.103 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pbdagcon/usr/bin/dazcon debian/pbdagcon/usr/bin/pbdagcon were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pbdagcon/usr/bin/dazcon debian/pbdagcon/usr/bin/pbdagcon were not linked against librt.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pbdagcon/usr/bin/dazcon debian/pbdagcon/usr/bin/pbdagcon were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pbdagcon/usr/bin/dazcon debian/pbdagcon/usr/bin/pbdagcon were not linked against libhts.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pbdagcon/usr/bin/dazcon debian/pbdagcon/usr/bin/pbdagcon were not linked against libpbbam.so.0.19.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/pbdagcon/usr/bin/dazcon debian/pbdagcon/usr/bin/pbdagcon were not linked against libpbihdf.so (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbdagcon' in '../pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.deb'. dpkg-deb: building package 'pbdagcon-dbgsym' in '../pbdagcon-dbgsym_0.3+git20161121.0000000+ds-1.1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20534 and its subdirectories I: Current time: Thu Sep 16 05:36:12 -12 2021 I: pbuilder-time-stamp: 1631813772 Fri Aug 14 11:13:18 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled16-arm64.debian.net. Fri Aug 14 11:13:18 UTC 2020 I: Preparing to do remote build '2' on codethink-sled16-arm64.debian.net. Fri Aug 14 11:18:17 UTC 2020 I: Deleting $TMPDIR on codethink-sled16-arm64.debian.net. Fri Aug 14 11:18:18 UTC 2020 I: pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.changes: Format: 1.8 Date: Wed, 06 Feb 2019 09:20:03 +0200 Source: pbdagcon Binary: pbdagcon pbdagcon-dbgsym Architecture: arm64 Version: 0.3+git20161121.0000000+ds-1.1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Adrian Bunk Description: pbdagcon - sequence consensus using directed acyclic graphs Changes: pbdagcon (0.3+git20161121.0000000+ds-1.1) unstable; urgency=medium . * Non-maintainer upload. * Remove manual dependencies on libpbbam, version build dependency on libpbbam-dev to ensure a proper dependency is generated. Checksums-Sha1: 93b73620bb51cb5f9c624e8fc485533aed985311 5563280 pbdagcon-dbgsym_0.3+git20161121.0000000+ds-1.1_arm64.deb ce35519101a3697d74a98786770631ae70dfb22d 6872 pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo 28a7854dab3b8190ab2885034828b8990cafafce 293828 pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.deb Checksums-Sha256: c28d04da96648f0fa2ce7500464e7338a9f885e3077525d17f8bdb6e52a7ee97 5563280 pbdagcon-dbgsym_0.3+git20161121.0000000+ds-1.1_arm64.deb 79a74440736730f38736031ab7660f3b494f078d7646747a050ee9ae531bdae4 6872 pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo 97e9d5aaa89c1fc42d90cde342e02cab93ae28402ea54725744ee8da2715eedd 293828 pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.deb Files: db84f351c9701c08bdcef9d653c1e62b 5563280 debug optional pbdagcon-dbgsym_0.3+git20161121.0000000+ds-1.1_arm64.deb 248ac71e2c9c5c38316a76bc2f8bcbd1 6872 science optional pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo 8b252308b86def5d92dfc8548e56f4f2 293828 science optional pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.deb Fri Aug 14 11:18:20 UTC 2020 I: diffoscope 155 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.nS3pPfzxsu/pbdagcon_0.3+git20161121.0000000+ds-1.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.nS3pPfzxsu/pbdagcon_0.3+git20161121.0000000+ds-1.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.nS3pPfzxsu/pbdagcon_0.3+git20161121.0000000+ds-1.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.nS3pPfzxsu/b1/pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.nS3pPfzxsu/b2/pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.314s) 0.314s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.095s) 0.095s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Aug 14 11:18:23 UTC 2020 I: diffoscope 155 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 14 11:18:23 UTC 2020 I: pbdagcon from buster built successfully and reproducibly on arm64. Fri Aug 14 11:18:25 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Aug 14 11:18:25 UTC 2020 I: Submitting 8.0K b1/pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo.asc Fri Aug 14 11:18:26 UTC 2020 I: Submitting 8.0K b2/pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo.asc Fri Aug 14 11:18:27 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 14 11:18:27 UTC 2020 I: Done submitting .buildinfo files. Fri Aug 14 11:18:27 UTC 2020 I: Removing signed pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo.asc files: removed './b1/pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo.asc' removed './b2/pbdagcon_0.3+git20161121.0000000+ds-1.1_arm64.buildinfo.asc'