Tue Aug 4 00:28:51 UTC 2020 I: starting to build octave-stk/buster/arm64 on jenkins on '2020-08-04 00:28' Tue Aug 4 00:28:51 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/5644/console.log Tue Aug 4 00:28:51 UTC 2020 I: Downloading source for buster/octave-stk=2.5.1-2 --2020-08-04 00:28:51-- http://deb.debian.org/debian/pool/main/o/octave-stk/octave-stk_2.5.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2005 (2.0K) Saving to: ‘octave-stk_2.5.1-2.dsc’ 0K . 100% 247M=0s 2020-08-04 00:28:51 (247 MB/s) - ‘octave-stk_2.5.1-2.dsc’ saved [2005/2005] Tue Aug 4 00:28:51 UTC 2020 I: octave-stk_2.5.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: octave-stk Binary: octave-stk Architecture: any Version: 2.5.1-2 Maintainer: Debian Octave Group Uploaders: Julien Bect , Homepage: https://octave.sourceforge.io/stk/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/pkg-octave-team/octave-stk Vcs-Git: https://salsa.debian.org/pkg-octave-team/octave-stk.git Testsuite: autopkgtest-pkg-octave Build-Depends: debhelper-compat (= 12), dh-octave (>= 0.5.3) Package-List: octave-stk deb math optional arch=any Checksums-Sha1: edd3fecfbf6607b450e4d39f29f33154ae1eb1cd 358897 octave-stk_2.5.1.orig.tar.gz 03a195d6df8332946c39975227447b38cd337de0 10480 octave-stk_2.5.1-2.debian.tar.xz Checksums-Sha256: a38a7a6547fa702214c7e34b198d379e42b37eeeae8f27f9d95719502cb778f0 358897 octave-stk_2.5.1.orig.tar.gz 9b51e71fae30367a8df096faca74ab3657ec00f5a57350da09e4299417e4bbd0 10480 octave-stk_2.5.1-2.debian.tar.xz Files: 8b9bfca6c2c95baf31cc6842561c60be 358897 octave-stk_2.5.1.orig.tar.gz d2f29bf17026af101a70bb3971e2fc22 10480 octave-stk_2.5.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEP0ZDkUmP6HS9tdmPISSqGYN4XJAFAlwwbqoACgkQISSqGYN4 XJCzJA/9FawUazifxtXIgx23DXIzdT0wc85x8rAHCpt79O4ck9/C73BKYqZVTC9F cGgBtdi/WTKgqgb1VrgbVjJGS3skfnje+ZqaLVKMoT6vlc1ieIWfLvM2Q1wX9EUb ZhJDqk2q4DzjJ/CJHMPWJI5AnwlVMsziFJoeFImCm7KgdajbZk6LaIpYFQ26/k0n fOci9w0WmLlsfTwUYQYJ/aJ+XX2TyUWeeN3o+s6TVj0e/LpMHky3n5n/S8D8QJLi r55QDmMH3M00XDERZjE62SuI+rKjgyeAMqExIFH5FL5N60DfTjym6dLMjP4nQATg GLYnnoQFPIdIT4QGkQgtaN+qTDvVCPpinyzvGoPXtkGyixmJ0em3wFjX91XXR1wK 99/rvtGpkOBgWGAbUa2VdzNRAJgZZ6nrsp3aNuDV4uG18xnEAudfntq8Vvbbkj80 hqpwITjNWWDpfHGu1h45nNVtqKa1igFHeOybdc7Z6ba6UcwKaj0lti1l2wYU09X7 aJ0DnhnSZrziW9vquZYxGfQxhjKG8augNTLQwwtj6BZkmCwiBAI5AyTZ+fxYIcB6 SbFusKNAZrfBlUGpV1EQZvhJiOExZFVfJNbyPk2X2cbR+skpKs/xFINz4ltYge5j 5wiApoKsd16Jhq+J75Nox4vakg9g/9PuRUq1bTG70jxLB3zyato= =TdVZ -----END PGP SIGNATURE----- Tue Aug 4 00:28:51 UTC 2020 I: Checking whether the package is not for us Tue Aug 4 00:28:51 UTC 2020 I: Starting 1st build on remote node codethink-sled13-arm64.debian.net. Tue Aug 4 00:28:51 UTC 2020 I: Preparing to do remote build '1' on codethink-sled13-arm64.debian.net. Tue Aug 4 00:37:56 UTC 2020 I: Deleting $TMPDIR on codethink-sled13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 5 18:52:02 -12 2021 I: pbuilder-time-stamp: 1630911122 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [octave-stk_2.5.1-2.dsc] I: copying [./octave-stk_2.5.1.orig.tar.gz] I: copying [./octave-stk_2.5.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 4 20:45:30 2019 -12 gpgv: using RSA key 3F464391498FE874BDB5D98F2124AA1983785C90 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./octave-stk_2.5.1-2.dsc dpkg-source: info: extracting octave-stk in octave-stk-2.5.1 dpkg-source: info: unpacking octave-stk_2.5.1.orig.tar.gz dpkg-source: info: unpacking octave-stk_2.5.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0002-Remove-the-MOLE.patch dpkg-source: info: applying 0003-Mark-expected-failure.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6144/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6144' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.5I8CIioFL3/pbuilderrc_gweR --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.5I8CIioFL3/b1 --logfile b1/build.log octave-stk_2.5.1-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled13-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 5 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/6144/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-octave (>= 0.5.3) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-octave (>= 0.5.3); however: Package dh-octave is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: aglfn{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} cme{a} debhelper{a} dh-autoreconf{a} dh-octave{a} dh-octave-autopkgtest{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-freefont-otf{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} gnuplot-data{a} gnuplot-nox{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libapp-cmd-perl{a} libarchive-zip-perl{a} libarpack2{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboolean-perl{a} libbsd0{a} libbtf1{a} libcairo2{a} libcamd2{a} libcapture-tiny-perl{a} libcarp-assert-more-perl{a} libcarp-assert-perl{a} libccolamd2{a} libcholmod3{a} libclass-load-perl{a} libclone-choose-perl{a} libcolamd2{a} libconfig-model-perl{a} libconvert-binhex-perl{a} libcroco3{a} libcups2{a} libcurl3-gnutls{a} libcxsparse3{a} libdata-optlist-perl{a} libdatrie1{a} libdbus-1-3{a} libdevel-callchecker-perl{a} libdouble-conversion1{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-etnaviv1{a} libdrm-freedreno1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm-tegra0{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1{a} libencode-locale-perl{a} liberror-perl{a} libevdev2{a} libexpat1{a} libexporter-lite-perl{a} libexporter-tiny-perl{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libflac8{a} libfltk-gl1.3{a} libfltk1.3{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgd3{a} libgetopt-long-descriptive-perl{a} libgfortran-8-dev{a} libgfortran5{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl2ps1.4{a} libglapi-mesa{a} libgles1{a} libgles2{a} libglib2.0-0{a} libglpk40{a} libglu1-mesa{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphicsmagick++-q16-12{a} libgraphicsmagick-q16-3{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhash-merge-perl{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libice6{a} libicu63{a} libinput-bin{a} libinput10{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-stringy-perl{a} libio-tiecombine-perl{a} libjack-jackd2-0{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libklu1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} liblist-moreutils-perl{a} libllvm7{a} liblog-log4perl-perl{a} libltdl7{a} liblua5.3-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmailtools-perl{a} libmetis5{a} libmime-tools-perl{a} libmodule-implementation-perl{a} libmodule-pluggable-perl{a} libmodule-runtime-perl{a} libmouse-perl{a} libmousex-nativetraits-perl{a} libmousex-strictconstructor-perl{a} libmtdev1{a} libncurses-dev{a} libncurses6{a} libnet-http-perl{a} libnet-smtp-ssl-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} liboctave-dev{a} liboctave6{a} libogg0{a} libopengl0{a} libopus0{a} libpackage-stash-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libparams-util-perl{a} libparams-validate-perl{a} libparse-debcontrol-perl{a} libparse-recdescent-perl{a} libpath-tiny-perl{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpod-pom-perl{a} libportaudio2{a} libpsl5{a} libpthread-stubs0-dev{a} libqhull7{a} libqrupdate1{a} libqscintilla2-qt5-13{a} libqscintilla2-qt5-l10n{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5widgets5{a} libreadline-dev{a} libreadline7{a} libregexp-common-perl{a} librtmp1{a} libsamplerate0{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libsndfile1{a} libssh2-1{a} libssl1.1{a} libstring-rewriteprefix-perl{a} libsub-exporter-perl{a} libsub-install-perl{a} libsuitesparseconfig5{a} libsz2{a} libtext-unidecode-perl{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libumfpack5{a} liburi-perl{a} libvorbis0a{a} libvorbisenc2{a} libwacom-common{a} libwacom2{a} libwayland-client0{a} libwayland-server0{a} libwebp6{a} libwebpmux3{a} libwmf0.2-7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri2-0-dev{a} libxcb-dri3-0{a} libxcb-dri3-dev{a} libxcb-glx0{a} libxcb-glx0-dev{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present-dev{a} libxcb-present0{a} libxcb-randr0{a} libxcb-randr0-dev{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shape0{a} libxcb-shape0-dev{a} libxcb-shm0{a} libxcb-sync-dev{a} libxcb-sync1{a} libxcb-util0{a} libxcb-xfixes0{a} libxcb-xfixes0-dev{a} libxcb-xinerama0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxpm4{a} libxrender1{a} libxshmfence-dev{a} libxshmfence1{a} libxxf86vm-dev{a} libxxf86vm1{a} libyaml-perl{a} lsb-base{a} m4{a} man-db{a} mesa-common-dev{a} netbase{a} octave{a} octave-common{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} readline-common{a} sensible-utils{a} tex-common{a} texinfo{a} ucf{a} x11-common{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dev{a} x11proto-fixes-dev{a} x11proto-xext-dev{a} x11proto-xf86vidmode-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bash-completion curl dbus default-jre-headless epstool fonts-liberation ghostscript groff gsfonts krb5-locales libarchive-cpio-perl libatlas3-base libauthen-sasl-perl libclass-method-modifiers-perl libclone-perl libclone-pp-perl libconfig-model-approx-perl libconfig-model-dpkg-perl libconfig-model-lcdproc-perl libconfig-model-openssh-perl libconfig-model-systemd-perl libconfig-model-tkui-perl libdata-dump-perl libfuse-perl libglib2.0-data libgpm2 libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libipc-shareable-perl libjson-xs-perl liblog-dispatch-perl libltdl-dev libmail-sendmail-perl libopenblas-base libpackage-stash-xs-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules libtext-levenshtein-damerau-perl libtie-ixhash-perl libunicode-utf8-perl libwacom-bin libxml-sax-expat-perl libyaml-libyaml-perl libyaml-syck-perl lynx octave-doc pstoedit publicsuffix qt5-gtk-platformtheme qttranslations5-l10n shared-mime-info wget xdg-user-dirs 0 packages upgraded, 350 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After unpacking 609 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 tex-common all 6.11 [53.1 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 netbase all 5.6 [19.4 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 aglfn all 1.7-3 [29.2 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 ca-certificates all 20190110 [157 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libparams-util-perl arm64 1.07-3+b4 [22.5 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libsub-install-perl all 0.928-1 [11.4 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b1 [11.4 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libdevel-callchecker-perl arm64 0.008-1 [15.6 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libparams-classify-perl arm64 0.015-1+b1 [25.4 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libclass-load-perl all 0.25-1 [16.1 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libio-stringy-perl all 2.111-3 [56.5 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libparams-validate-perl arm64 1.29-1+b1 [66.3 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libgetopt-long-descriptive-perl all 0.103-2 [27.8 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libio-tiecombine-perl all 1.005-1 [13.0 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libmodule-pluggable-perl all 5.2-1 [25.7 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libstring-rewriteprefix-perl all 0.007-2 [6448 B] Get: 46 http://deb.debian.org/debian buster/main arm64 libapp-cmd-perl all 0.331-1 [63.9 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libboolean-perl all 0.46-1 [11.1 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libcarp-assert-perl all 0.21-1 [18.2 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libcarp-assert-more-perl all 1.16-1 [15.6 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libclone-choose-perl all 0.010-1 [8424 B] Get: 53 http://deb.debian.org/debian buster/main arm64 libhash-merge-perl all 0.300-1 [14.3 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libjson-perl all 4.02000-1 [88.8 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 liblist-moreutils-perl arm64 0.416-1+b4 [62.4 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 liblog-log4perl-perl all 1.49-1 [377 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libmouse-perl arm64 2.5.6-1+b1 [170 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libmousex-nativetraits-perl all 1.09-2 [67.4 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libmousex-strictconstructor-perl all 0.02-2 [4996 B] Get: 61 http://deb.debian.org/debian buster/main arm64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libpod-pom-perl all 2.01-3 [67.0 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libregexp-common-perl all 2017060201-1 [177 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libconfig-model-perl all 2.133-1 [456 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libyaml-perl all 1.27-1 [66.8 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 cme all 1.029-1 [81.0 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libsuitesparseconfig5 arm64 1:5.4.0+dfsg-1 [20.7 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libamd2 arm64 1:5.4.0+dfsg-1 [30.7 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libarpack2 arm64 3.7.0-2 [81.7 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libcamd2 arm64 1:5.4.0+dfsg-1 [31.8 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libccolamd2 arm64 1:5.4.0+dfsg-1 [34.2 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 libcolamd2 arm64 1:5.4.0+dfsg-1 [29.2 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 libmetis5 arm64 5.1.0.dfsg-5+b2 [146 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 libcholmod3 arm64 1:5.4.0+dfsg-1 [281 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 libcurl3-gnutls arm64 7.64.0-4+deb10u1 [310 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 libcxsparse3 arm64 1:5.4.0+dfsg-1 [69.1 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 libfftw3-double3 arm64 3.3.8-2 [385 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 libfftw3-single3 arm64 3.3.8-2 [630 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 fontconfig-config all 2.13.1-2 [280 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 libglvnd0 arm64 1.1.0-1 [42.4 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get: 122 http://deb.debian.org/debian buster/main arm64 libx11-data all 2:1.6.7-1 [298 kB] Get: 123 http://deb.debian.org/debian buster/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get: 125 http://deb.debian.org/debian buster/main arm64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 libdrm2 arm64 2.4.97-1 [39.5 kB] Get: 127 http://deb.debian.org/debian buster/main arm64 libglapi-mesa arm64 18.3.6-2+deb10u1 [74.8 kB] Get: 128 http://deb.debian.org/debian buster/main arm64 libx11-xcb1 arm64 2:1.6.7-1 [190 kB] Get: 129 http://deb.debian.org/debian buster/main arm64 libxcb-dri2-0 arm64 1.13.1-2 [101 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 libxcb-dri3-0 arm64 1.13.1-2 [100 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 libxcb-glx0 arm64 1.13.1-2 [116 kB] Get: 132 http://deb.debian.org/debian buster/main arm64 libxcb-present0 arm64 1.13.1-2 [99.1 kB] Get: 133 http://deb.debian.org/debian buster/main arm64 libxcb-sync1 arm64 1.13.1-2 [102 kB] Get: 134 http://deb.debian.org/debian buster/main arm64 libxfixes3 arm64 1:5.0.3-1 [21.0 kB] Get: 135 http://deb.debian.org/debian buster/main arm64 libxdamage1 arm64 1:1.1.4-3+b3 [14.8 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get: 137 http://deb.debian.org/debian buster/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 138 http://deb.debian.org/debian buster/main arm64 libdrm-amdgpu1 arm64 2.4.97-1 [26.6 kB] Get: 139 http://deb.debian.org/debian buster/main arm64 libdrm-etnaviv1 arm64 2.4.97-1 [21.0 kB] Get: 140 http://deb.debian.org/debian buster/main arm64 libdrm-nouveau2 arm64 2.4.97-1 [25.5 kB] Get: 141 http://deb.debian.org/debian buster/main arm64 libdrm-radeon1 arm64 2.4.97-1 [30.0 kB] Get: 142 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 143 http://deb.debian.org/debian buster/main arm64 libllvm7 arm64 1:7.0.1-8 [10.8 MB] Get: 144 http://deb.debian.org/debian buster/main arm64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 145 http://deb.debian.org/debian buster/main arm64 libsensors5 arm64 1:3.5.0-3 [51.8 kB] Get: 146 http://deb.debian.org/debian buster/main arm64 libgl1-mesa-dri arm64 18.3.6-2+deb10u1 [4910 kB] Get: 147 http://deb.debian.org/debian buster/main arm64 libglx-mesa0 arm64 18.3.6-2+deb10u1 [180 kB] Get: 148 http://deb.debian.org/debian buster/main arm64 libglx0 arm64 1.1.0-1 [29.0 kB] Get: 149 http://deb.debian.org/debian buster/main arm64 libgl1 arm64 1.1.0-1 [92.5 kB] Get: 150 http://deb.debian.org/debian buster/main arm64 libgl2ps1.4 arm64 1.4.0+dfsg1-2 [33.5 kB] Get: 151 http://deb.debian.org/debian buster/main arm64 libglu1-mesa arm64 9.0.0-2.1+b3 [146 kB] Get: 152 http://deb.debian.org/debian buster/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 153 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 154 http://deb.debian.org/debian buster/main arm64 libwebp6 arm64 0.6.1-2 [233 kB] Get: 155 http://deb.debian.org/debian buster/main arm64 libtiff5 arm64 4.1.0+git191117-2~deb10u1 [259 kB] Get: 156 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 157 http://deb.debian.org/debian buster/main arm64 x11-common all 1:7.7+19 [251 kB] Get: 158 http://deb.debian.org/debian buster/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get: 159 http://deb.debian.org/debian buster/main arm64 liblcms2-2 arm64 2.9-3 [137 kB] Get: 160 http://deb.debian.org/debian buster/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 161 http://deb.debian.org/debian buster/main arm64 libwebpmux3 arm64 0.6.1-2 [95.4 kB] Get: 162 http://deb.debian.org/debian buster/main arm64 libwmf0.2-7 arm64 0.2.8.4-14 [152 kB] Get: 163 http://deb.debian.org/debian buster/main arm64 libgraphicsmagick-q16-3 arm64 1.4+really1.3.35-1~deb10u1 [1023 kB] Get: 164 http://deb.debian.org/debian buster/main arm64 libgraphicsmagick++-q16-12 arm64 1.4+really1.3.35-1~deb10u1 [122 kB] Get: 165 http://deb.debian.org/debian buster/main arm64 libaec0 arm64 1.0.2-1 [18.8 kB] Get: 166 http://deb.debian.org/debian buster/main arm64 libsz2 arm64 1.0.2-1 [6456 B] Get: 167 http://deb.debian.org/debian buster/main arm64 libhdf5-103 arm64 1.10.4+repack-10 [1168 kB] Get: 168 http://deb.debian.org/debian buster/main arm64 libqrupdate1 arm64 1.1.2-3 [31.5 kB] Get: 169 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 170 http://deb.debian.org/debian buster/main arm64 libumfpack5 arm64 1:5.4.0+dfsg-1 [197 kB] Get: 171 http://deb.debian.org/debian buster/main arm64 liboctave6 arm64 4.4.1-5 [6295 kB] Get: 172 http://deb.debian.org/debian buster/main arm64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 173 http://deb.debian.org/debian buster/main arm64 libasound2 arm64 1.1.8-1 [333 kB] Get: 174 http://deb.debian.org/debian buster/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 175 http://deb.debian.org/debian buster/main arm64 libxcursor1 arm64 1:1.1.15-2 [36.0 kB] Get: 176 http://deb.debian.org/debian buster/main arm64 libxft2 arm64 2.3.2-2 [51.3 kB] Get: 177 http://deb.debian.org/debian buster/main arm64 libxinerama1 arm64 2:1.1.4-2 [17.7 kB] Get: 178 http://deb.debian.org/debian buster/main arm64 libfltk1.3 arm64 1.3.4-9 [523 kB] Get: 179 http://deb.debian.org/debian buster/main arm64 libfltk-gl1.3 arm64 1.3.4-9 [70.0 kB] Get: 180 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 181 http://deb.debian.org/debian buster/main arm64 libglpk40 arm64 4.65-2 [336 kB] Get: 182 http://deb.debian.org/debian buster/main arm64 libbtf1 arm64 1:5.4.0+dfsg-1 [22.1 kB] Get: 183 http://deb.debian.org/debian buster/main arm64 libklu1 arm64 1:5.4.0+dfsg-1 [71.8 kB] Get: 184 http://deb.debian.org/debian buster/main arm64 libopus0 arm64 1.3-1 [171 kB] Get: 185 http://deb.debian.org/debian buster/main arm64 libsamplerate0 arm64 0.1.9-2 [942 kB] Get: 186 http://deb.debian.org/debian buster/main arm64 libjack-jackd2-0 arm64 1.9.12~dfsg-2 [286 kB] Get: 187 http://deb.debian.org/debian buster/main arm64 libportaudio2 arm64 19.6.0-1 [54.9 kB] Get: 188 http://deb.debian.org/debian buster/main arm64 libqhull7 arm64 2015.2-4 [175 kB] Get: 189 http://deb.debian.org/debian buster/main arm64 libqscintilla2-qt5-l10n all 2.10.4+dfsg-2.1 [53.7 kB] Get: 190 http://deb.debian.org/debian buster/main arm64 libdouble-conversion1 arm64 3.1.0-3 [36.0 kB] Get: 191 http://deb.debian.org/debian buster/main arm64 libpcre2-16-0 arm64 10.32-5 [176 kB] Get: 192 http://deb.debian.org/debian buster/main arm64 libqt5core5a arm64 5.11.3+dfsg1-1+deb10u3 [1796 kB] Get: 193 http://deb.debian.org/debian buster/main arm64 fontconfig arm64 2.13.1-2 [405 kB] Get: 194 http://deb.debian.org/debian buster/main arm64 libwayland-server0 arm64 1.16.0-1 [31.8 kB] Get: 195 http://deb.debian.org/debian buster/main arm64 libgbm1 arm64 18.3.6-2+deb10u1 [67.1 kB] Get: 196 http://deb.debian.org/debian buster/main arm64 libwayland-client0 arm64 1.16.0-1 [25.9 kB] Get: 197 http://deb.debian.org/debian buster/main arm64 libxcb-xfixes0 arm64 1.13.1-2 [103 kB] Get: 198 http://deb.debian.org/debian buster/main arm64 libegl-mesa0 arm64 18.3.6-2+deb10u1 [130 kB] Get: 199 http://deb.debian.org/debian buster/main arm64 libegl1 arm64 1.1.0-1 [32.8 kB] Get: 200 http://deb.debian.org/debian buster/main arm64 libgraphite2-3 arm64 1.3.13-7 [75.8 kB] Get: 201 http://deb.debian.org/debian buster/main arm64 libharfbuzz0b arm64 2.3.1-1 [1155 kB] Get: 202 http://deb.debian.org/debian buster/main arm64 libevdev2 arm64 1.6.0+dfsg-1 [29.2 kB] Get: 203 http://deb.debian.org/debian buster/main arm64 libmtdev1 arm64 1.1.5-1+b1 [21.3 kB] Get: 204 http://deb.debian.org/debian buster/main arm64 libgudev-1.0-0 arm64 232-2 [11.6 kB] Get: 205 http://deb.debian.org/debian buster/main arm64 libwacom-common all 0.32-1 [39.1 kB] Get: 206 http://deb.debian.org/debian buster/main arm64 libwacom2 arm64 0.32-1 [17.9 kB] Get: 207 http://deb.debian.org/debian buster/main arm64 libinput-bin arm64 1.12.6-2+deb10u1 [17.1 kB] Get: 208 http://deb.debian.org/debian buster/main arm64 libinput10 arm64 1.12.6-2+deb10u1 [97.8 kB] Get: 209 http://deb.debian.org/debian buster/main arm64 libdbus-1-3 arm64 1.12.20-0+deb10u1 [206 kB] Get: 210 http://deb.debian.org/debian buster/main arm64 libqt5dbus5 arm64 5.11.3+dfsg1-1+deb10u3 [217 kB] Get: 211 http://deb.debian.org/debian buster/main arm64 libqt5network5 arm64 5.11.3+dfsg1-1+deb10u3 [631 kB] Get: 212 http://deb.debian.org/debian buster/main arm64 libxcb-icccm4 arm64 0.4.1-1.1 [26.9 kB] Get: 213 http://deb.debian.org/debian buster/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get: 214 http://deb.debian.org/debian buster/main arm64 libxcb-util0 arm64 0.3.8-3+b2 [22.5 kB] Get: 215 http://deb.debian.org/debian buster/main arm64 libxcb-image0 arm64 0.4.0-1+b2 [23.2 kB] Get: 216 http://deb.debian.org/debian buster/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b2 [16.0 kB] Get: 217 http://deb.debian.org/debian buster/main arm64 libxcb-randr0 arm64 1.13.1-2 [110 kB] Get: 218 http://deb.debian.org/debian buster/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get: 219 http://deb.debian.org/debian buster/main arm64 libxcb-render-util0 arm64 0.3.9-1+b1 [17.5 kB] Get: 220 http://deb.debian.org/debian buster/main arm64 libxcb-shape0 arm64 1.13.1-2 [99.6 kB] Get: 221 http://deb.debian.org/debian buster/main arm64 libxcb-xinerama0 arm64 1.13.1-2 [98.9 kB] Get: 222 http://deb.debian.org/debian buster/main arm64 libxcb-xkb1 arm64 1.13.1-2 [122 kB] Get: 223 http://deb.debian.org/debian buster/main arm64 libxi6 arm64 2:1.7.9-1 [79.0 kB] Get: 224 http://deb.debian.org/debian buster/main arm64 xkb-data all 2.26-2 [681 kB] Get: 225 http://deb.debian.org/debian buster/main arm64 libxkbcommon0 arm64 0.8.2-1 [118 kB] Get: 226 http://deb.debian.org/debian buster/main arm64 libxkbcommon-x11-0 arm64 0.8.2-1 [39.0 kB] Get: 227 http://deb.debian.org/debian buster/main arm64 libqt5gui5 arm64 5.11.3+dfsg1-1+deb10u3 [2577 kB] Get: 228 http://deb.debian.org/debian buster/main arm64 libavahi-common-data arm64 0.7-4+b1 [122 kB] Get: 229 http://deb.debian.org/debian buster/main arm64 libavahi-common3 arm64 0.7-4+b1 [53.5 kB] Get: 230 http://deb.debian.org/debian buster/main arm64 libavahi-client3 arm64 0.7-4+b1 [56.8 kB] Get: 231 http://deb.debian.org/debian buster/main arm64 libcups2 arm64 2.2.10-6+deb10u3 [310 kB] Get: 232 http://deb.debian.org/debian buster/main arm64 libqt5widgets5 arm64 5.11.3+dfsg1-1+deb10u3 [2141 kB] Get: 233 http://deb.debian.org/debian buster/main arm64 libqt5printsupport5 arm64 5.11.3+dfsg1-1+deb10u3 [210 kB] Get: 234 http://deb.debian.org/debian buster/main arm64 libqscintilla2-qt5-13 arm64 2.10.4+dfsg-2.1 [952 kB] Get: 235 http://deb.debian.org/debian buster/main arm64 libqt5sql5 arm64 5.11.3+dfsg1-1+deb10u3 [139 kB] Get: 236 http://deb.debian.org/debian buster/main arm64 libqt5help5 arm64 5.11.3-4 [142 kB] Get: 237 http://deb.debian.org/debian buster/main arm64 libqt5opengl5 arm64 5.11.3+dfsg1-1+deb10u3 [153 kB] Get: 238 http://deb.debian.org/debian buster/main arm64 libogg0 arm64 1.3.2-1+b1 [18.4 kB] Get: 239 http://deb.debian.org/debian buster/main arm64 libflac8 arm64 1.3.2-3 [177 kB] Get: 240 http://deb.debian.org/debian buster/main arm64 libvorbis0a arm64 1.3.6-2 [86.9 kB] Get: 241 http://deb.debian.org/debian buster/main arm64 libvorbisenc2 arm64 1.3.6-2 [80.0 kB] Get: 242 http://deb.debian.org/debian buster/main arm64 libsndfile1 arm64 1.0.28-6 [246 kB] Get: 243 http://deb.debian.org/debian buster/main arm64 libtext-unidecode-perl all 1.30-1 [103 kB] Get: 244 http://deb.debian.org/debian buster/main arm64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get: 245 http://deb.debian.org/debian buster/main arm64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get: 246 http://deb.debian.org/debian buster/main arm64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 247 http://deb.debian.org/debian buster/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-1 [334 kB] Get: 248 http://deb.debian.org/debian buster/main arm64 texinfo arm64 6.5.0.dfsg.1-4+b1 [1427 kB] Get: 249 http://deb.debian.org/debian buster/main arm64 octave-common all 4.4.1-5 [4365 kB] Get: 250 http://deb.debian.org/debian buster/main arm64 octave arm64 4.4.1-5 [1963 kB] Get: 251 http://deb.debian.org/debian buster/main arm64 libncurses-dev arm64 6.1+20181013-2+deb10u2 [324 kB] Get: 252 http://deb.debian.org/debian buster/main arm64 libreadline-dev arm64 7.0-5 [128 kB] Get: 253 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get: 254 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo-dev arm64 1:1.5.2-2+b1 [186 kB] Get: 255 http://deb.debian.org/debian buster/main arm64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 256 http://deb.debian.org/debian buster/main arm64 libaec-dev arm64 1.0.2-1 [17.1 kB] Get: 257 http://deb.debian.org/debian buster/main arm64 hdf5-helpers arm64 1.10.4+repack-10 [35.2 kB] Get: 258 http://deb.debian.org/debian buster/main arm64 libhdf5-cpp-103 arm64 1.10.4+repack-10 [132 kB] Get: 259 http://deb.debian.org/debian buster/main arm64 libhdf5-dev arm64 1.10.4+repack-10 [2683 kB] Get: 260 http://deb.debian.org/debian buster/main arm64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 261 http://deb.debian.org/debian buster/main arm64 x11proto-dev all 2018.4-4 [251 kB] Get: 262 http://deb.debian.org/debian buster/main arm64 x11proto-core-dev all 2018.4-4 [3128 B] Get: 263 http://deb.debian.org/debian buster/main arm64 libxau-dev arm64 1:1.0.8-1+b2 [22.8 kB] Get: 264 http://deb.debian.org/debian buster/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get: 265 http://deb.debian.org/debian buster/main arm64 xtrans-dev all 1.3.5-1 [100 kB] Get: 266 http://deb.debian.org/debian buster/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get: 267 http://deb.debian.org/debian buster/main arm64 libxcb1-dev arm64 1.13.1-2 [174 kB] Get: 268 http://deb.debian.org/debian buster/main arm64 libx11-dev arm64 2:1.6.7-1 [816 kB] Get: 269 http://deb.debian.org/debian buster/main arm64 libdrm-freedreno1 arm64 2.4.97-1 [27.8 kB] Get: 270 http://deb.debian.org/debian buster/main arm64 libdrm-tegra0 arm64 2.4.97-1 [15.8 kB] Get: 271 http://deb.debian.org/debian buster/main arm64 libdrm-dev arm64 2.4.97-1 [135 kB] Get: 272 http://deb.debian.org/debian buster/main arm64 mesa-common-dev arm64 18.3.6-2+deb10u1 [611 kB] Get: 273 http://deb.debian.org/debian buster/main arm64 libglvnd-core-dev arm64 1.1.0-1 [13.2 kB] Get: 274 http://deb.debian.org/debian buster/main arm64 libgles1 arm64 1.1.0-1 [14.3 kB] Get: 275 http://deb.debian.org/debian buster/main arm64 libgles2 arm64 1.1.0-1 [19.8 kB] Get: 276 http://deb.debian.org/debian buster/main arm64 libopengl0 arm64 1.1.0-1 [34.4 kB] Get: 277 http://deb.debian.org/debian buster/main arm64 libglvnd-dev arm64 1.1.0-1 [5128 B] Get: 278 http://deb.debian.org/debian buster/main arm64 libx11-xcb-dev arm64 2:1.6.7-1 [192 kB] Get: 279 http://deb.debian.org/debian buster/main arm64 libxcb-dri3-dev arm64 1.13.1-2 [101 kB] Get: 280 http://deb.debian.org/debian buster/main arm64 libxcb-render0-dev arm64 1.13.1-2 [113 kB] Get: 281 http://deb.debian.org/debian buster/main arm64 libxcb-randr0-dev arm64 1.13.1-2 [115 kB] Get: 282 http://deb.debian.org/debian buster/main arm64 libxcb-shape0-dev arm64 1.13.1-2 [101 kB] Get: 283 http://deb.debian.org/debian buster/main arm64 libxcb-xfixes0-dev arm64 1.13.1-2 [106 kB] Get: 284 http://deb.debian.org/debian buster/main arm64 libxcb-sync-dev arm64 1.13.1-2 [105 kB] Get: 285 http://deb.debian.org/debian buster/main arm64 libxcb-present-dev arm64 1.13.1-2 [101 kB] Get: 286 http://deb.debian.org/debian buster/main arm64 libxshmfence-dev arm64 1.3-1 [8212 B] Get: 287 http://deb.debian.org/debian buster/main arm64 libxcb-dri2-0-dev arm64 1.13.1-2 [102 kB] Get: 288 http://deb.debian.org/debian buster/main arm64 libxcb-glx0-dev arm64 1.13.1-2 [122 kB] Get: 289 http://deb.debian.org/debian buster/main arm64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get: 290 http://deb.debian.org/debian buster/main arm64 libxfixes-dev arm64 1:5.0.3-1 [23.2 kB] Get: 291 http://deb.debian.org/debian buster/main arm64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get: 292 http://deb.debian.org/debian buster/main arm64 libxdamage-dev arm64 1:1.1.4-3+b3 [14.8 kB] Get: 293 http://deb.debian.org/debian buster/main arm64 x11proto-xext-dev all 2018.4-4 [3128 B] Get: 294 http://deb.debian.org/debian buster/main arm64 libxext-dev arm64 2:1.3.3-1+b2 [104 kB] Get: 295 http://deb.debian.org/debian buster/main arm64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get: 296 http://deb.debian.org/debian buster/main arm64 libxxf86vm-dev arm64 1:1.1.4-1+b2 [25.1 kB] Get: 297 http://deb.debian.org/debian buster/main arm64 libgl1-mesa-dev arm64 18.3.6-2+deb10u1 [48.0 kB] Get: 298 http://deb.debian.org/debian buster/main arm64 libblas-dev arm64 3.8.0-2 [105 kB] Get: 299 http://deb.debian.org/debian buster/main arm64 liblapack-dev arm64 3.8.0-2 [1524 kB] Get: 300 http://deb.debian.org/debian buster/main arm64 libfftw3-long3 arm64 3.3.8-2 [526 kB] Get: 301 http://deb.debian.org/debian buster/main arm64 libfftw3-bin arm64 3.3.8-2 [47.4 kB] Get: 302 http://deb.debian.org/debian buster/main arm64 libfftw3-dev arm64 3.3.8-2 [1455 kB] Get: 303 http://deb.debian.org/debian buster/main arm64 libgfortran-8-dev arm64 8.3.0-6 [346 kB] Get: 304 http://deb.debian.org/debian buster/main arm64 gfortran-8 arm64 8.3.0-6 [7861 kB] Get: 305 http://deb.debian.org/debian buster/main arm64 gfortran arm64 4:8.3.0-1 [1420 B] Get: 306 http://deb.debian.org/debian buster/main arm64 liboctave-dev arm64 4.4.1-5 [756 kB] Get: 307 http://deb.debian.org/debian buster/main arm64 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 308 http://deb.debian.org/debian buster/main arm64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 309 http://deb.debian.org/debian buster/main arm64 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 310 http://deb.debian.org/debian buster/main arm64 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 311 http://deb.debian.org/debian buster/main arm64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 312 http://deb.debian.org/debian buster/main arm64 liburi-perl all 1.76-1 [89.9 kB] Get: 313 http://deb.debian.org/debian buster/main arm64 libhtml-parser-perl arm64 3.72-3+b3 [103 kB] Get: 314 http://deb.debian.org/debian buster/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 315 http://deb.debian.org/debian buster/main arm64 libio-html-perl all 1.001-1 [17.6 kB] Get: 316 http://deb.debian.org/debian buster/main arm64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 317 http://deb.debian.org/debian buster/main arm64 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 318 http://deb.debian.org/debian buster/main arm64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 319 http://deb.debian.org/debian buster/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 320 http://deb.debian.org/debian buster/main arm64 perl-openssl-defaults arm64 3 [6782 B] Get: 321 http://deb.debian.org/debian buster/main arm64 libnet-ssleay-perl arm64 1.85-2+b1 [303 kB] Get: 322 http://deb.debian.org/debian buster/main arm64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 323 http://deb.debian.org/debian buster/main arm64 libnet-http-perl all 6.18-1 [24.5 kB] Get: 324 http://deb.debian.org/debian buster/main arm64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 325 http://deb.debian.org/debian buster/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 326 http://deb.debian.org/debian buster/main arm64 libwww-perl all 6.36-2 [188 kB] Get: 327 http://deb.debian.org/debian buster/main arm64 liberror-perl all 0.17027-2 [30.9 kB] Get: 328 http://deb.debian.org/debian buster/main arm64 libexporter-lite-perl all 0.08-1 [11.1 kB] Get: 329 http://deb.debian.org/debian buster/main arm64 libparse-debcontrol-perl all 2.005-4 [25.7 kB] Get: 330 http://deb.debian.org/debian buster/main arm64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get: 331 http://deb.debian.org/debian buster/main arm64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get: 332 http://deb.debian.org/debian buster/main arm64 libmailtools-perl all 2.18-1 [88.5 kB] Get: 333 http://deb.debian.org/debian buster/main arm64 libmime-tools-perl all 5.509-1 [212 kB] Get: 334 http://deb.debian.org/debian buster/main arm64 gnuplot-data all 5.2.6+dfsg1-1+deb10u1 [180 kB] Get: 335 http://deb.debian.org/debian buster/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get: 336 http://deb.debian.org/debian buster/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get: 337 http://deb.debian.org/debian buster/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get: 338 http://deb.debian.org/debian buster/main arm64 libgd3 arm64 2.2.5-5.2 [125 kB] Get: 339 http://deb.debian.org/debian buster/main arm64 liblua5.3-0 arm64 5.3.3-1.1 [110 kB] Get: 340 http://deb.debian.org/debian buster/main arm64 libfribidi0 arm64 1.0.5-3.1+deb10u1 [63.6 kB] Get: 341 http://deb.debian.org/debian buster/main arm64 libthai-data all 0.1.28-2 [170 kB] Get: 342 http://deb.debian.org/debian buster/main arm64 libdatrie1 arm64 0.2.12-2 [38.6 kB] Get: 343 http://deb.debian.org/debian buster/main arm64 libthai0 arm64 0.1.28-2 [52.8 kB] Get: 344 http://deb.debian.org/debian buster/main arm64 libpango-1.0-0 arm64 1.42.4-8~deb10u1 [179 kB] Get: 345 http://deb.debian.org/debian buster/main arm64 libpangoft2-1.0-0 arm64 1.42.4-8~deb10u1 [65.7 kB] Get: 346 http://deb.debian.org/debian buster/main arm64 libpangocairo-1.0-0 arm64 1.42.4-8~deb10u1 [54.0 kB] Get: 347 http://deb.debian.org/debian buster/main arm64 gnuplot-nox arm64 5.2.6+dfsg1-1+deb10u1 [844 kB] Get: 348 http://deb.debian.org/debian buster/main arm64 fonts-freefont-otf all 20120503-9 [3169 kB] Get: 349 http://deb.debian.org/debian buster/main arm64 dh-octave-autopkgtest all 0.6.2 [8308 B] Get: 350 http://deb.debian.org/debian buster/main arm64 dh-octave all 0.6.2 [19.9 kB] Fetched 115 MB in 14s (8193 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../002-libuchardet0_0.0.6-3_arm64.deb ... 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Unpacking libkeyutils1:arm64 (1.6-6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../095-libkrb5support0_1.17-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../096-libk5crypto3_1.17-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../097-libkrb5-3_1.17-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../098-libgssapi-krb5-2_1.17-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../099-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:arm64. 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Setting up libpsl5:arm64 (0.20.2-2) ... Setting up libfftw3-single3:arm64 (3.3.8-2) ... Setting up libogg0:arm64 (1.3.2-1+b1) ... Setting up libmouse-perl (2.5.6-1+b1) ... Setting up libpod-pom-perl (2.01-3) ... Setting up libglvnd-core-dev:arm64 (1.1.0-1) ... Setting up hdf5-helpers (1.10.4+repack-10) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libdatrie1:arm64 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libglvnd0:arm64 (1.1.0-1) ... Setting up libio-stringy-perl (2.111-3) ... Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libqscintilla2-qt5-l10n (2.10.4+dfsg-2.1) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up fonts-freefont-otf (20120503-9) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.30-1) ... Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up perl-openssl-defaults:arm64 (3) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libfftw3-long3:arm64 (3.3.8-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libclone-choose-perl (0.010-1) ... Setting up xkb-data (2.26-2) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libqhull7:arm64 (2015.2-4) ... Setting up libmetis5:arm64 (5.1.0.dfsg-5+b2) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libyaml-perl (1.27-1) ... 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Setting up libfftw3-double3:arm64 (3.3.8-2) ... Setting up libglapi-mesa:arm64 (18.3.6-2+deb10u1) ... Setting up libparams-util-perl (1.07-3+b4) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up libmtdev1:arm64 (1.1.5-1+b1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up libexporter-lite-perl (0.08-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Setting up sensible-utils (0.0.12) ... Setting up libxshmfence1:arm64 (1.3-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up liblua5.3-0:arm64 (5.3.3-1.1) ... Setting up libjson-perl (4.02000-1) ... Setting up libasound2:arm64 (1.1.8-1) ... Setting up libmousex-strictconstructor-perl (0.02-2) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up netbase (5.6) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libtiff5:arm64 (4.1.0+git191117-2~deb10u1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libsamplerate0:arm64 (0.1.9-2) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libwebpmux3:arm64 (0.6.1-2) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libevdev2:arm64 (1.6.0+dfsg-1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libdouble-conversion1:arm64 (3.1.0-3) ... Setting up libsuitesparseconfig5:arm64 (1:5.4.0+dfsg-1) ... Setting up liburi-perl (1.76-1) ... Setting up libcarp-assert-perl (0.21-1) ... Setting up libgudev-1.0-0:arm64 (232-2) ... Setting up libsz2:arm64 (1.0.2-1) ... Setting up libvorbisenc2:arm64 (1.3.6-2) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libwacom-common (0.32-1) ... Setting up libmousex-nativetraits-perl (1.09-2) ... Setting up libxkbcommon0:arm64 (0.8.2-1) ... Setting up libwayland-client0:arm64 (1.16.0-1) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gnuplot-data (5.2.6+dfsg1-1+deb10u1) ... Setting up libgfortran-8-dev:arm64 (8.3.0-6) ... Setting up libamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libcarp-assert-more-perl (1.16-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libncurses-dev:arm64 (6.1+20181013-2+deb10u2) ... Setting up libxcb1:arm64 (1.13.1-2) ... Setting up libxcb-xfixes0:arm64 (1.13.1-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxau-dev:arm64 (1:1.0.8-1+b2) ... Setting up libcolamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up libxshmfence-dev:arm64 (1.3-1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libxcb-glx0:arm64 (1.13.1-2) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libhash-merge-perl (0.300-1) ... Setting up libxcb-keysyms1:arm64 (0.4.0-1+b2) ... Setting up libaec-dev:arm64 (1.0.2-1) ... Setting up libxcb-shape0:arm64 (1.13.1-2) ... Setting up libavahi-common3:arm64 (0.7-4+b1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up libnet-http-perl (6.18-1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:arm64 (0.3.9-1+b1) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libxcb-icccm4:arm64 (0.4.1-1.1) ... Setting up libxcb-util0:arm64 (0.3.8-3+b2) ... Setting up libreadline-dev:arm64 (7.0-5) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libbtf1:arm64 (1:5.4.0+dfsg-1) ... Setting up libxcb-xkb1:arm64 (1.13.1-2) ... Setting up libxcb-image0:arm64 (0.4.0-1+b2) ... Setting up libxcb-present0:arm64 (1.13.1-2) ... Setting up libthai0:arm64 (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libcamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb-xinerama0:arm64 (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up libglpk40:arm64 (4.65-2) ... Setting up libxcb-sync1:arm64 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libconfig-model-perl (2.133-1) ... Setting up libhdf5-103:arm64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:arm64 (0.8.2-1) ... Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libqt5core5a:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:arm64 (1.13.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libjack-jackd2-0:arm64 (1.9.12~dfsg-2) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:arm64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libklu1:arm64 (1:5.4.0+dfsg-1) ... Setting up libqt5dbus5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libccolamd2:arm64 (1:5.4.0+dfsg-1) ... Setting up libxcb-randr0:arm64 (1.13.1-2) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libllvm7:arm64 (1:7.0.1-8) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libharfbuzz0b:arm64 (2.3.1-1) ... Setting up libcxsparse3:arm64 (1:5.4.0+dfsg-1) ... Setting up libsndfile1:arm64 (1.0.28-6) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libwacom2:arm64 (0.32-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libfftw3-dev:arm64 (3.3.8-2) ... Setting up libavahi-client3:arm64 (0.7-4+b1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libblas-dev:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsub-exporter-perl (0.987-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:arm64 (1.13.1-2) ... Setting up libportaudio2:arm64 (19.6.0-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libdrm-nouveau2:arm64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libdrm-etnaviv1:arm64 (2.4.97-1) ... Setting up libxcb1-dev:arm64 (1.13.1-2) ... Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libgbm1:arm64 (18.3.6-2+deb10u1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libwmf0.2-7:arm64 (0.2.8.4-14) ... Setting up libdrm-radeon1:arm64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libgl1-mesa-dri:arm64 (18.3.6-2+deb10u1) ... Setting up libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Setting up libarpack2:arm64 (3.7.0-2) ... Setting up libx11-dev:arm64 (2:1.6.7-1) ... Setting up libxext6:arm64 (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:arm64 (1.13.1-2) ... Setting up libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Setting up libqrupdate1:arm64 (1.1.2-3) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libqt5network5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2+deb10u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt5sql5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libegl-mesa0:arm64 (18.3.6-2+deb10u1) ... Setting up libxcb-dri2-0-dev:arm64 (1.13.1-2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up libxinerama1:arm64 (2:1.1.4-2) ... 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Setting up libqt5printsupport5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up dh-octave-autopkgtest (0.6.2) ... Setting up cme (1.029-1) ... Setting up libqscintilla2-qt5-13 (2.10.4+dfsg-2.1) ... Setting up libqt5opengl5:arm64 (5.11.3+dfsg1-1+deb10u3) ... Setting up libgl1-mesa-dev:arm64 (18.3.6-2+deb10u1) ... Setting up octave (4.4.1-5) ... Setting up liboctave-dev (4.4.1-5) ... Setting up libwww-perl (6.36-2) ... Setting up libparse-debcontrol-perl (2.005-4) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up debhelper (12.1.1) ... Setting up dh-octave (0.6.2) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/octave-stk-2.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package octave-stk dpkg-buildpackage: info: source version 2.5.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Rafael Laboissiere dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=octave --with=octave dh_auto_clean -O--buildsystem=octave dh_octave_clean make[1]: Entering directory '/build/octave-stk-2.5.1/src' rm -f *.o *.mex make[1]: Leaving directory '/build/octave-stk-2.5.1/src' dh_autoreconf_clean -O--buildsystem=octave dh_clean -O--buildsystem=octave debian/rules binary dh binary --buildsystem=octave --with=octave dh_update_autotools_config -O--buildsystem=octave dh_autoreconf -O--buildsystem=octave dh_octave_version -O--buildsystem=octave Checking the Octave version... ok dh_auto_configure -O--buildsystem=octave dh_auto_build -O--buildsystem=octave dh_auto_test -O--buildsystem=octave create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=octave dh_prep -O--buildsystem=octave dh_auto_install -O--buildsystem=octave octave --no-gui --no-history --silent --no-init-file --no-window-system /usr/share/dh-octave/install-pkg.m warning: pkg: creating the directory /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages warning: pkg: creating the directory /build/octave-stk-2.5.1/debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages make[1]: Entering directory '/build/octave-stk-2.5.1/src' /usr/bin/mkoctfile --verbose --mex --output __stk_dist_pairwise__.mex stk_dist_pairwise.c /usr/bin/mkoctfile --verbose --mex --output __get_column_number__.mex get_column_number.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_pairwise.c -o stk_dist_pairwise.o /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixy__.mex stk_dist_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.c /usr/bin/mkoctfile --verbose --mex --output __stk_isdominated_mex__.mex stk_isdominated_mex.c /usr/bin/mkoctfile --verbose --mex --output __stk_mindist_mex__.mex stk_mindist_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG get_column_number.c -o get_column_number.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_matrixy.c -o stk_dist_matrixy.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_filldist_discr_mex.c -o stk_filldist_discr_mex.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_matrixy.c -o stk_gpquadform_matrixy.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_isdominated_mex.c -o stk_isdominated_mex.o /usr/bin/mkoctfile --verbose --mex --output __stk_dist_matrixx__.mex stk_dist_matrixx.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_mindist_mex.c -o stk_mindist_mex.o gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dist_matrixx.c -o stk_dist_matrixx.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_pairwise__.mex stk_dist_pairwise.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_filldist_discr_mex__.mex stk_filldist_discr_mex.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_gpquadform_matrixy__.mex stk_gpquadform_matrixy.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_matrixx__.mex stk_dist_matrixx.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_mindist_mex__.mex stk_mindist_mex.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __get_column_number__.mex get_column_number.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dist_matrixy__.mex stk_dist_matrixy.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_isdominated_mex__.mex stk_isdominated_mex.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_matrixx__.mex stk_gpquadform_matrixx.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_matrixx.c -o stk_gpquadform_matrixx.o /usr/bin/mkoctfile --verbose --mex --output __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_gpquadform_pairwise.c -o stk_gpquadform_pairwise.o /usr/bin/mkoctfile --verbose --mex --output __stk_paretofind_mex__.mex stk_paretofind_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_paretofind_mex.c -o stk_paretofind_mex.o /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_vdc_rr2__.mex stk_sampling_vdc_rr2.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_sampling_vdc_rr2.c -o stk_sampling_vdc_rr2.o /usr/bin/mkoctfile --verbose --mex --output __stk_sampling_sobol_mex__.mex stk_sampling_sobol_mex.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_sampling_sobol_mex.c -o stk_sampling_sobol_mex.o /usr/bin/mkoctfile --verbose --mex --output __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_distrib_bivnorm0_cdf.c -o stk_distrib_bivnorm0_cdf.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_gpquadform_matrixx__.mex stk_gpquadform_matrixx.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_gpquadform_pairwise__.mex stk_gpquadform_pairwise.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro /usr/bin/mkoctfile --verbose --mex --output __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.c wfg.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG stk_dominatedhv_mex.c -o stk_dominatedhv_mex.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_paretofind_mex__.mex stk_paretofind_mex.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_sampling_vdc_rr2__.mex stk_sampling_vdc_rr2.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_sampling_sobol_mex__.mex stk_sampling_sobol_mex.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_distrib_bivnorm0_cdf__.mex stk_distrib_bivnorm0_cdf.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -DMEX_DEBUG wfg.c -o wfg.o g++ -I/usr/include/octave-4.4.1/octave/.. -I/usr/include/octave-4.4.1/octave -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/octave-stk-2.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -shared -Wl,-Bsymbolic -o __stk_dominatedhv_mex__.mex stk_dominatedhv_mex.o wfg.o -L/usr/lib/aarch64-linux-gnu/octave/4.4.1 -L/usr/lib/aarch64-linux-gnu -loctinterp -loctave -Wl,-z,relro make[1]: Leaving directory '/build/octave-stk-2.5.1/src' copyfile /build/octave-stk-2.5.1/./src/__get_column_number__.mex /build/octave-stk-2.5.1/./src/__stk_dist_matrixx__.mex /build/octave-stk-2.5.1/./src/__stk_dist_matrixy__.mex /build/octave-stk-2.5.1/./src/__stk_dist_pairwise__.mex /build/octave-stk-2.5.1/./src/__stk_distrib_bivnorm0_cdf__.mex /build/octave-stk-2.5.1/./src/__stk_dominatedhv_mex__.mex /build/octave-stk-2.5.1/./src/__stk_filldist_discr_mex__.mex /build/octave-stk-2.5.1/./src/__stk_gpquadform_matrixx__.mex /build/octave-stk-2.5.1/./src/__stk_gpquadform_matrixy__.mex /build/octave-stk-2.5.1/./src/__stk_gpquadform_pairwise__.mex /build/octave-stk-2.5.1/./src/__stk_isdominated_mex__.mex /build/octave-stk-2.5.1/./src/__stk_mindist_mex__.mex /build/octave-stk-2.5.1/./src/__stk_paretofind_mex__.mex /build/octave-stk-2.5.1/./src/__stk_sampling_sobol_mex__.mex /build/octave-stk-2.5.1/./src/__stk_sampling_vdc_rr2__.mex /build/octave-stk-2.5.1/./inst/aarch64-unknown-linux-gnu-api-v52 For information about changes from previous versions of the stk package, run 'news stk'. dh_octave_check -O--buildsystem=octave Checking package... Checking m files ... [inst/utils/stk_generate_samplepaths.m] >>>>> /build/octave-stk-2.5.1/inst/utils/stk_generate_samplepaths.m ***** shared model, xi, zi, xt, n, nb_paths dim = 1; n = 50; nb_paths = 5; model = stk_model ('stk_materncov32_iso', dim); model.param = log ([1.0; 2.9]); xt = stk_sampling_regulargrid (n, dim, [-1.0; 1.0]); xi = [xt(1, :); xt(end, :)]; zi = [0; 0]; ***** error zsim = stk_generate_samplepaths (); ***** error zsim = stk_generate_samplepaths (model); ***** test zsim = stk_generate_samplepaths (model, xt); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt); ***** test zsim = stk_generate_samplepaths (model, xi, zi, xt, nb_paths); ***** error zsim = stk_generate_samplepaths (model, xi, zi, xt, nb_paths, log (2)); ***** test zsim = stk_generate_samplepaths (model, xt); assert (isequal (size (zsim), [n, 1])); ***** test zsim = stk_generate_samplepaths (model, xt, nb_paths); assert (isequal (size (zsim), [n, nb_paths])); ***** test % duplicate simulation points zsim = stk_generate_samplepaths (model, [xt; xt], nb_paths); assert (isequal (size (zsim), [2 * n, nb_paths])); assert (isequal (zsim(1:n, :), zsim((n + 1):end, :))); ***** test % simulation points equal to observation points (noiseless model) % https://sourceforge.net/p/kriging/tickets/14/ zsim = stk_generate_samplepaths (model, xt, zeros (n, 1), xt); assert (isequal (zsim, zeros (n, 1))); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/utils/stk_conditioning.m] >>>>> /build/octave-stk-2.5.1/inst/utils/stk_conditioning.m ***** shared n, m, ni, xi_ind, lambda, zsim, zi n = 50; m = 5; ni = 10; xi_ind = 1:ni; lambda = 1/ni * ones (ni, n); % prediction == averaging zsim = ones (n, m); % const unconditioned samplepaths zi = zeros (ni, 1); % conditioning by zeros ***** error zsimc = stk_conditioning (); ***** error zsimc = stk_conditioning (lambda); ***** error zsimc = stk_conditioning (lambda, zi); ***** test zsimc = stk_conditioning (lambda, zi, zsim); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); ***** error zsimc = stk_conditioning (lambda, zi, zsim, xi_ind, pi^2); ***** test zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), zeros (n, m))); ***** test zi = 2 * ones (ni, 1); % conditioning by twos zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); assert (stk_isequal_tolabs (double (zsimc), 2 * ones (n, m))); ***** test DIM = 1; nt = 400; xt = stk_sampling_regulargrid (nt, DIM, [-1.0; 1.0]); NI = 6; xi_ind = [1 20 90 200 300 350]; xi = xt(xi_ind, 1); zi = (1:NI)'; % linear response ;-) % Carry out the kriging prediction at points xt model = stk_model ('stk_materncov52_iso'); model.param = log ([1.0; 2.9]); [ignore_zp, lambda] = stk_predict (model, xi, [], xt); % Generate (unconditional) sample paths according to the model NB_PATHS = 10; zsim = stk_generate_samplepaths (model, xt, NB_PATHS); zsimc = stk_conditioning (lambda, zi, zsim, xi_ind); 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_vdc_rr2.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_vdc_rr2.m ***** error __stk_sampling_vdc_rr2__() % two inputs required ***** error __stk_sampling_vdc_rr2__(10) % two inputs required ***** error __stk_sampling_vdc_rr2__(10, 3, -1) % two inputs required ***** test n = 300; j = 25; x = __stk_sampling_vdc_rr2__(n, j); assert(isequal(size(x), [n 1])) ***** test x = __stk_sampling_vdc_rr2__(2000, 7); y = double (x(1998:2000, :)); yref = [0.849786281294525; 0.085080398941584; 0.555668634235701]; assert(stk_isequal_tolrel(y, yref, 1e-13)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_regulargrid.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_regulargrid.m ***** shared x, n, dim, box n = 9; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_regulargrid (); ***** test x = stk_sampling_regulargrid (n); ***** test x = stk_sampling_regulargrid (n, dim); ***** test x = stk_sampling_regulargrid (n, dim, box); ***** error x = stk_sampling_regulargrid (n, dim, box, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isa (x, 'stk_factorialdesign')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_regulargrid (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:3, n = 3^dim; x = stk_sampling_regulargrid(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end ***** test nn = [3 4 5]; for dim = 1:3, x = stk_sampling_regulargrid(nn(1:dim), dim); assert(isequal(size(x), [prod(nn(1:dim)) dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 11 tests, 11 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randunif.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_randunif.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 2, 2]; ***** error x = stk_sampling_randunif (); ***** test x = stk_sampling_randunif (n); ***** test x = stk_sampling_randunif (n, dim); ***** test x = stk_sampling_randunif (n, dim, box); ***** error x = stk_sampling_randunif (n, dim, box, pi); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randunif (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randunif(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_randomlhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_randomlhs.m ***** shared x, n, dim, box n = 10; dim = 2; box = [0, 0; 1, 1]; ***** error x = stk_sampling_randomlhs (); ***** test x = stk_sampling_randomlhs (n); ***** test x = stk_sampling_randomlhs (n, dim); ***** test x = stk_sampling_randomlhs (n, dim, box); ***** error x = stk_sampling_randomlhs (n, dim, box, pi); ***** assert (isa(x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_randomlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs(n, dim); assert(isequal(size(x), [n dim])); u = double(x); u = u(:); assert(~any(isnan(u) | isinf(u))); assert((min(u) >= 0) && (max(u) <= 1)); assert(stk_is_lhs(x, n, dim)); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_olhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_olhs.m ***** shared x, n, d, box, permut n = 5; d = 2; box = [0 0; 1, 1]; permut = 1:2; ***** error x = stk_sampling_olhs(); ***** test x = stk_sampling_olhs(n); ***** test x = stk_sampling_olhs(n, d); ***** test x = stk_sampling_olhs(n, d, box); ***** test x = stk_sampling_olhs(n, d, box, permut); ***** error x = stk_sampling_olhs(n, d, box, permut, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_olhs (n, d, box); assert (isequal (x.colnames, cn)); ***** test for r = 1:5 n = 2 ^ (r + 1) + 1; d = 2 * r; x = stk_sampling_olhs (n, d); assert (isequal (size (x), [n d])); box = repmat ([-1; 1], 1, d); assert (stk_is_lhs (x, n, d, box)); x = double (x); w = x' * x; assert (stk_isequal_tolabs (w / w(1,1), eye (d))); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nestedlhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_nestedlhs.m ***** shared x, n, dim, box, niter, levels n = [48; 12; 4; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nestedlhs (); ***** test x = stk_sampling_nestedlhs (n); ***** test x = stk_sampling_nestedlhs (n, dim); ***** test x = stk_sampling_nestedlhs (n, dim, box); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter); ***** test x = stk_sampling_nestedlhs (n, dim, box, niter, levels); ***** error x = stk_sampling_nestedlhs (n, dim, box, niter, levels, pi); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); assert (stk_is_lhs (y, n(lev), dim, box)); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nestedlhs (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_nesteddesign.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_nesteddesign.m ***** shared x, n, dim, box, niter, levels n = [23; 14; 5; 2]; dim = 2; box = [0, 0; 4, 4]; niter = 10; levels = [10.1; 15.2; -9.3; 2.4; 17.5]; ***** error x = stk_sampling_nesteddesign (); ***** test x = stk_sampling_nesteddesign (n); ***** test x = stk_sampling_nesteddesign (n, dim); ***** test x = stk_sampling_nesteddesign (n, dim, box); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter); ***** test x = stk_sampling_nesteddesign (n, dim, box, niter, levels); ***** error x = stk_sampling_nesteddesign (n, dim, box, niter, levels, pi); ***** assert ( isequal(size(x), [sum(n), dim + 1]) ); ***** assert ( isa(x, 'stk_dataframe') ); cn = [0; cumsum(n)]; for lev = 1:length(n), y = x( (cn(lev) + 1):(cn(lev + 1)), 1:dim ); assert (isequal (size (y), [n(lev) dim])); if lev > 1 assert ( isequal(z((end - n(lev) + 1):end, :), y) ); end if lev == length(n) assert (stk_is_lhs (y, n(lev), dim, box)); end z = y; end ***** assert (isequal (x.colnames{dim + 1}, 'Level')); levels = stk_dataframe(levels, {'t'}); box = stk_hrect(box, {'x1', 'x2', 'x3', 'x4'}); ***** test x = stk_sampling_nesteddesign (n, [], box, [], levels); ***** assert (isequal(x.colnames, {'x1', 'x2', 'x3', 'x4', 't'}) ); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_maximinlhs.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_maximinlhs.m ***** shared x, n, dim, box, niter n = 20; dim = 2; box = [0, 0; 1, 1]; niter = 1; ***** error x = stk_sampling_maximinlhs (); ***** test x = stk_sampling_maximinlhs (n); ***** test x = stk_sampling_maximinlhs (n, dim); ***** test x = stk_sampling_maximinlhs (n, dim, box); ***** test x = stk_sampling_maximinlhs (n, dim, box, niter); ***** error x = stk_sampling_maximinlhs (n, dim, box, niter, pi); ***** assert (isa (x, 'stk_dataframe')); ***** assert (isequal (x.colnames, {})); ***** test cn = {'W', 'H'}; box = stk_hrect (box, cn); x = stk_sampling_maximinlhs (n, dim, box); assert (isequal (x.colnames, cn)); ***** test for dim = 1:5, x = stk_sampling_randomlhs (n, dim); assert (isequal (size (x), [n dim])); u = double (x); u = u(:); assert (~ any (isnan (u) | isinf (u))); assert ((min (u) >= 0) && (max (u) <= 1)); assert (stk_is_lhs (x, n, dim)); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampling_halton_rr2.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampling_halton_rr2.m ***** error stk_sampling_halton_rr2 () % nargin < 1 ***** error stk_sampling_halton_rr2 (10, 3, [], -1) % nargin > 3 ***** test n = 300; d = 25; x = stk_sampling_halton_rr2 (n, d); assert (isequal (size (x), [n d])) ***** test x = stk_sampling_halton_rr2 (1000, 3); y = double (x(end, :)); yref = [0.9052734375 0.028349336991312 0.74848]; assert (stk_isequal_tolrel (y, yref, 1e-13)); ***** test dim = 2; box = stk_hrect (dim); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, {})); ***** test dim = 2; cn = {'W', 'H'}; box = stk_hrect (dim, cn); x = stk_sampling_halton_rr2 (5, dim, box); assert (isequal (x.colnames, cn)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ei_eval.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampcrit_ei_eval.m ***** error EI = stk_sampcrit_ei_eval () % not enough args ***** error EI = stk_sampcrit_ei_eval (0) % not enough args ***** error EI = stk_sampcrit_ei_eval (0, 0, 0, 0, 0) % too many args ***** shared xi, zi, M_prior, xt, zp, EIref, EI1, EI2, EI3 xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1]; M_prior = stk_model('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); xt = stk_sampling_regulargrid (20, 1, [0; 1]); zp = stk_predict (M_prior, xi, zi, xt); EIref = stk_distrib_normal_ei (min (zi), zp.mean, sqrt (zp.var), true); ***** test % Current syntax (STK 2.4.1 and later) EI1 = stk_sampcrit_ei_eval (zp.mean, sqrt (zp.var), min (zi)); ***** assert (isequal (EI1, EIref)) 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_ehvi_eval.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampcrit_ehvi_eval.m ***** shared zr, zi zr = [1 1]; zi = [0.25 0.75; 0.5 0.5; 0.75 0.25]; ***** test % no improvement (1 computation) zp_mean = [0.6 0.6]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 0, 1e-12)); ***** test % guaranteed improvement (1 computation) zp_mean = [0 0]; zp_std = [0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, 10 * 0.25 ^ 2)); ***** test % no improvement again (2 computations) zp_mean = [0.5 0.5; 0.6 0.6]; zp_std = [0 0; 0 0]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, [0; 0], 1e-12)); ***** test % no observation -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = []; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); ***** test % no observation below zr -> EHVI wrt zr zp_mean = [0.6 0.6]; zp_std = 0.01 * [1 1]; zi = [2 2]; EHVI = stk_sampcrit_ehvi_eval (zp_mean, zp_std, zi, zr); assert (stk_isequal_tolabs (EHVI, (1 - 0.6)^2, 1e-12)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_sampcrit_akg_eval.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_sampcrit_akg_eval.m ***** shared zc_mean, zc_std, zr_mean, zr_std, zcr_cov, AKG, nc xi = [0; 0.2; 0.7; 0.9]; zi = [1; 0.9; 0.6; 0.1] - 10; ni = 4; M_prior = stk_model('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_prior.lognoisevariance = 0.678; nc = 20; xc = stk_sampling_regulargrid (nc, 1, [0; 1]); [zp, ignd1, ignd2, K] = stk_predict (M_prior, xi, zi, [xi; xc]); % See CG#07 ir = 1:ni; ic = ni + (1:nc); zc_mean = zp.mean(ic); zc_std = sqrt (zp.var(ic)); % reference grid: current evaluation points ("KGCP") zr_mean = zp.mean(ir); zr_std = sqrt (zp.var(ir)); zcr_cov = K(ic, ir); ***** test AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std, zcr_cov); ***** assert (isequal (size (AKG), [nc 1])) ***** assert (all (AKG >= 0)) ***** error AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std); ***** error AKG = stk_sampcrit_akg_eval (zc_mean, zc_std, zr_mean, zr_std, zcr_cov, 1.234); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/sampling/stk_halfpintl.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/stk_halfpintl.m ***** test % case #1 a = 1; b = 1; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 1) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #2: two lines, slopes not equal, already sorted a = [1; -1]; b = [0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #3: same as #2, but not sorted a = [-1; 1]; b = [ 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #4: two lines, equal slopes, already sorted a = [0; 0]; b = [1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #5: same as #4, but not sorted a = [0; 0]; b = [2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (a_out == 0) assert (b_out == 1) assert (isempty (z_out)) ***** test % case #6: add a dominated line to #2 (the result does not change) a = [1; -1; 0]; b = [0; 2; 1]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #7: permutation of #6 a = [1; 0; -1]; b = [0; 1; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #8: another permutation of #6 a = [0; 1; -1]; b = [1; 0; 2]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) ***** test % case #9: same as #8, with some duplicated lines added a = [0; 1; 0; -1; 0; -1; 1]; b = [1; 0; 1; 2; 1; 2; 0]; [a_out, b_out, z_out] = stk_halfpintl (a, b); assert (isequal (a_out, [1; -1])) assert (isequal (b_out, [0; 2])) assert (z_out == 1) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_sampcrit_eqi/stk_sampcrit_eqi.m ***** error F = stk_sampcrit_eqi ([], 0.5, 10, 1.234); % too many input arguments ***** shared F, M, EQI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_eqi () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.quantile_order == 0.5) ***** assert (get (F, 'quantile_order') == 0.5) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** test F = set (F, 'quantile_order', 0.8); assert (F.quantile_order == 0.8) ***** error F.quantile_order = 1.1; ***** error F.quantile_order = -0.1; ***** error F.quantile_order = [1 2]; ***** error F.current_minimum = 3.333; % read-only ***** error F.quantile_value = 2.222; % read-only ***** error EQI = feval (F, 1.0); ***** test F = stk_sampcrit_eqi (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_eqi (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_eqi (M) % ending ";" omitted on purpose, to test disp F = | | model: | quantile_order: 0.5 | point_batch_size: 1 | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 1.234, 10 * eps)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_eqi (M); ***** assert (isequal (F.model, M)) ***** assert (stk_isequal_tolrel (F.current_minimum, 2.077997, 1e-5)); ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EQI), [3 1])) ***** assert (all (EQI >= 0)) ***** test F.quantile_order = 0.9; assert (F.quantile_order == 0.9) ***** shared F ***** test F = stk_sampcrit_eqi (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); ***** shared F, M M = stk_model_gpposterior (stk_model (), [1 2 3]', [1.234 3 2]'); ***** error F = stk_sampcrit_eqi (M, [], 0); ***** error F = stk_sampcrit_eqi (M, [], 1.5); ***** error F = stk_sampcrit_eqi (M, [], nan); ***** error F = stk_sampcrit_eqi (M, [], [10 20]); ***** test F = stk_sampcrit_eqi (M, [], 10); ***** assert (isequal (F.quantile_order, 0.5)); ***** assert (isequal (F.point_batch_size, 10)); ***** error F = stk_sampcrit_eqi (M, 0.8, 0); ***** error F = stk_sampcrit_eqi (M, 0.8, 1.5); ***** error F = stk_sampcrit_eqi (M, 0.8, nan); ***** error F = stk_sampcrit_eqi (M, 0.8, [10 20]); ***** test F = stk_sampcrit_eqi (M, 0.8, 5); ***** assert (isequal (F.quantile_order, 0.8)); ***** assert (isequal (F.point_batch_size, 5)); ***** shared F, M, EQI prior_model = stk_model (); prior_model.lognoisevariance = 0.678; M = stk_model_gpposterior (prior_model, [1 2 3]', [1.234 3 2]'); F = stk_sampcrit_eqi (M); ***** test F.point_batch_size = 10; % numeric ***** assert (isequal (F.point_batch_size, 10)) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = @(x, n) 100 - n; % function handle ***** assert (isa (F.point_batch_size, 'function_handle')) ***** test EQI = feval (F, [1.0; 1.1; 1.2]); ***** test F.point_batch_size = 'sin'; % char ***** assert (isa (F.point_batch_size, 'function_handle')) 64 tests, 64 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_sampcrit_ei/stk_sampcrit_ei.m ***** error F = stk_sampcrit_ei ([], 1.234); % too many input arguments ***** shared F, M, EI M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_ei () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | current_minimum: Inf | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (F.current_minimum == +inf) ***** assert (get (F, 'current_minimum') == +inf) ***** error F.toto ***** error get (F, 'toto') ***** error F.current_min = 1.234; % read-only ***** error F = set (F, 'current_min', 1.234); % read-only ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error EI = feval (F, 1.0); ***** test F = stk_sampcrit_ei (); F.model = M; assert (~ isempty (F.model)); ***** test F = stk_sampcrit_ei (); F = set (F, 'model', M); assert (~ isempty (F.model)); ***** test F.model = []; % remove model assert (isempty (F.model)); assert (F.current_minimum == +inf); ***** test F = stk_sampcrit_ei (M) % ending ";" omitted on purpose, to test disp F = | | model: | current_minimum: 1.234 | ***** assert (isequal (F.model, M)) ***** assert (F.current_minimum == 1.234); ***** test EI = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (EI), [3 1])) ***** assert (all (EI >= 0)) ***** shared F ***** test F = stk_sampcrit_ei (stk_model ()); ***** assert (F.current_minimum == +inf); ***** error feval (F, 1.0); 25 tests, 25 passed, 0 known failure, 0 skipped [inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_sampcrit_akg/stk_sampcrit_akg.m ***** shared F, M, AKG M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_akg () % ending ";" omitted on purpose, to test disp F = | | model: -- (not instantiated) | reference_grid: -- (use current evaluation points) | ***** assert (isempty (F.model)) ***** assert (isempty (get (F, 'model'))) ***** assert (isempty (F.reference_grid)) ***** assert (isempty (get (F, 'reference_grid'))) ***** error F.toto ***** error get (F, 'toto') ***** error F.toto = 1.234; % field does not exist ***** error F = set (F, 'toto', 1.234); % field does not exist ***** error AKG = feval (F, 1.0); ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); ***** test F = stk_sampcrit_akg (); F = set (F, 'model', M); assert (isequal (F.model, M)); assert (isequal (size (F.zr_mean), [3 1])) % n x 1 assert (isequal (size (F.zr_std), [3 1])) % n x 1 assert (isequal (size (F.zr_lambdamu), [4 3])) % (n+1) x n (constant mean) ***** test F.model = []; % remove model assert (isempty (F.model)); assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) ***** test xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isempty (F.zr_mean)) assert (isempty (F.zr_std)) assert (isempty (F.zr_lambdamu)) F = | | model: -- (not instantiated) | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (); F.model = M; assert (isequal (F.model, M)); xr = [1 1.5 2 2.5 3]'; F.reference_grid = xr % ending ";" omitted on purpose, to test disp assert (isequal (F.reference_grid, xr)) assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 assert (isequal (size (F.zr_std), [5 1])) % nr x 1 assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) F = | | model: | reference_grid: <5x1 double array> | ***** test F.reference_grid = []; assert (isempty (F.reference_grid)) ***** test F = stk_sampcrit_akg (M) % ending ";" omitted on purpose, to test disp F = | | model: | reference_grid: -- (use current evaluation points) | ***** assert (isequal (F.model, M)) ***** test AKG = feval (F, [1.0; 1.1; 1.2]); ***** assert (isequal (size (AKG), [3 1])) ***** assert (all (AKG >= 0)) ***** test [AKG2, zp] = feval (F, [1.0; 1.1; 1.2]); assert (isequal (AKG2, AKG)); assert (isa (zp, 'stk_dataframe') && isequal (size (zp), [3 2])) ***** shared F, xr xr = [1 1.5 2 2.5 3]'; ***** test F = stk_sampcrit_akg (stk_model ()); ***** assert (isempty (F.reference_grid)) ***** test F.reference_grid = xr; ***** assert (isequal (F.reference_grid, xr)) ***** assert (isempty (F.zr_mean)) ***** assert (isempty (F.zr_std)) ***** assert (isempty (F.zr_lambdamu)) ***** error AKG = feval (F, 1.0); ***** shared F, M, xr xr = [1 1.5 2 2.5 3]'; M = stk_model_gpposterior (stk_model, [1 2 3]', [1.234 3 2]'); ***** test F = stk_sampcrit_akg (M, xr); ***** assert (isequal (F.model, M)) ***** assert (isequal (F.reference_grid, xr)) ***** assert (isequal (size (F.zr_mean), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_std), [5 1])) % nr x 1 ***** assert (isequal (size (F.zr_lambdamu), [4 5])) % (n+1) x nr (constant mean) ***** error F = stk_sampcrit_akg (M, xr, 1.234); % too many input arguments 38 tests, 38 passed, 0 known failure, 0 skipped [inst/sampling/@stk_function/stk_function.m] >>>>> /build/octave-stk-2.5.1/inst/sampling/@stk_function/stk_function.m ***** shared F ***** test F = stk_function () % ending ";" omitted on purpose, to test disp F = ***** error F = stk_function (1.234) % too many input arguments ***** error [F F]; % arrays of sampling criterion objects are not supported ***** error [F; F]; % idem ***** error get (F, 'toto'); % field does not exist ***** error y = feval (F, 1.0); % not implemented for "pure" function objects ***** error dummy = F{2}; % illegal indexing ***** error dummy = F(1.0); % feval not implemented ***** error dummy = F.toto; % field does not exist ***** error F{2} = 1.234; % illegal indexing ***** error F(5) = 1.234; % illegal indexing ***** error F.toto = 1.234; % field does not exist 12 tests, 12 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_init.m ***** test xi = (1:10)'; zi = sin (xi); model = stk_model ('stk_materncov52_iso'); model.param = stk_param_init (model, xi, zi, [1; 10], false); xt = (1:9)' + 0.5; zt = sin (xt); zp = stk_predict (model, xi, zi, xt); assert (sum ((zt - zp.mean) .^ 2) < 1e-3); ***** test % check equivariance of parameter estimates f = @(x) sin (x); xi = stk_sampling_regulargrid (10, 1); zi = stk_feval (f, xi); shift = 1000; scale = 0.01; model = stk_model ('stk_materncov32_iso'); p1 = stk_param_init (model, xi, zi); p2 = stk_param_init (model, xi, shift + scale .* zi); assert (stk_isequal_tolabs (p2(1), p1(1) + log (scale^2), 1e-10)) assert (stk_isequal_tolabs (p2(2), p1(2), eps)) ***** shared xi, zi, BOX, xt, zt f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); DIM = 1; % Dimension of the factor space BOX = [-1.0; 1.0]; % Factor space xi = stk_sampling_regulargrid (20, DIM, BOX); % Evaluation points zi = stk_feval (f, xi); % Evaluation results NT = 400; % Number of points in the grid xt = stk_sampling_regulargrid (NT, DIM, BOX); % Generate a regular grid zt = stk_feval (f, xt); % Values of f on the grid ***** xtest % This test is known to fail in Debian buster i386 % because of a known problem in Octave's sqp/qp functions % http://savannah.gnu.org/bugs/?38875 model = stk_model ('stk_materncov_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov32_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov32_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov52_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_materncov52_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** test model = stk_model ('stk_gausscov_iso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 5.21976e-18 ***** test model = stk_model ('stk_gausscov_aniso'); [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (max ((zp.mean - zt) .^ 2) < 1e-3) warning: matrix singular to machine precision, rcond = 3.20551e-18 ***** test % Homoscedastic case / do_estim_lnv = true model = stk_model ('stk_materncov32_iso'); [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, true); [model.param, model.lognoisevariance] = ... stk_param_estim (model, xi, zi); zp = stk_predict (model, xi, zi, xt); assert (model.lognoisevariance > -inf); assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** error % Homoscedastic case / do_estim_lnv = false / model.lnv = nan model = stk_model ('stk_materncov32_iso'); model.lognoisevariance = nan; % not compatible with do_estim_lnv == false [model.param, model.lognoisevariance] = ... stk_param_init (model, xi, zi, BOX, false); ***** error % Heteroscedastic case / do_estim_lnv = true model = stk_model ('stk_materncov32_iso'); lnv = log ((100 + rand (size (zi))) / 1e6); model.lognoisevariance = lnv; % here we say that lnv is known [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX, true); ***** test % Heteroscedastic case / known noise variance model = stk_model ('stk_materncov32_iso'); lnv = log ((100 + rand (size (zi))) / 1e6); model.lognoisevariance = lnv; % here we say that lnv is known [param0, model.lognoisevariance] = stk_param_init (model, xi, zi, BOX); model.param = stk_param_estim (model, xi, zi, param0); zp = stk_predict (model, xi, zi, xt); assert (isequal (model.lognoisevariance, lnv)); % should be untouched assert (max ((zp.mean - zt) .^ 2) < 1e-3) ***** shared model, x, z model = stk_model ('stk_materncov52_iso'); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); ***** test % Constant response, noiseless model [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isequal (lnv, -inf)); warning: Parameter estimation is impossible with constant-response data. ***** test % Constant response, noisy model model.lognoisevariance = nan; [param, lnv] = stk_param_init (model, x, z); assert ((all (isfinite (param))) && (length (param) == 2)); assert (isscalar (lnv) && isfinite (lnv)); warning: Parameter estimation is impossible with constant-response data. 16 tests, 16 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_relik.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_relik.m ***** shared f, xi, zi, NI, model, J, dJ1, dJ2 f = @(x)(- (0.8 * x(:, 1) + sin (5 * x(:, 2) + 1) ... + 0.1 * sin (10 * x(:, 3)))); DIM = 3; NI = 20; box = repmat ([-1.0; 1.0], 1, DIM); xi = stk_sampling_halton_rr2 (NI, DIM, box); zi = stk_feval (f, xi); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter model = stk_model('stk_materncov_aniso'); model.param = log([SIGMA2; NU; 1/RHO1 * ones(DIM, 1)]); ***** error [J, dJ1, dJ2] = stk_param_relik (); ***** error [J, dJ1, dJ2] = stk_param_relik (model); ***** error [J, dJ1, dJ2] = stk_param_relik (model, xi); ***** test [J, dJ1, dJ2] = stk_param_relik (model, xi, zi); ***** error [J, dJ1, dJ2] = stk_param_relik (model, xi, zi, pi); ***** test TOL_REL = 0.01; assert (stk_isequal_tolrel (J, 21.6, TOL_REL)); assert (stk_isequal_tolrel (dJ1, [4.387 -0.1803 0.7917 0.1392 2.580]', TOL_REL)); assert (isnan (dJ2)); ***** shared xi, zi, model, TOL_REL xi = [-1 -.6 -.2 .2 .6 1]'; zi = [-0.11 1.30 0.23 -1.14 0.36 -0.37]'; model = stk_model ('stk_materncov_iso'); model.param = log ([1.0 4.0 2.5]); model.lognoisevariance = log (0.01); TOL_REL = 0.01; ***** test % Another simple 1D check [ARL, dARL_dtheta, dARL_dLNV] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (ARL, 6.327, TOL_REL)); assert (stk_isequal_tolrel (dARL_dtheta, [0.268 0.0149 -0.636]', TOL_REL)); assert (stk_isequal_tolrel (dARL_dLNV, -1.581e-04, TOL_REL)); ***** test % Same 1D test with simple kriging model.lm = stk_lm_null; [ARL, dARL_dtheta, dARL_dLNV] = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (ARL, 7.475, TOL_REL)); assert (stk_isequal_tolrel (dARL_dtheta, [0.765 0.0238 -1.019]', TOL_REL)); assert (stk_isequal_tolrel (dARL_dLNV, 3.0517e-03, TOL_REL)); ***** test % Check the gradient on a 2D test case f = @stk_testfun_braninhoo; DIM = 2; BOX = [[-5; 10], [0; 15]]; NI = 20; TOL_REL = 1e-2; DELTA = 1e-6; model = stk_model ('stk_materncov52_iso', DIM); xi = stk_sampling_halton_rr2 (NI, DIM, BOX); zi = stk_feval (f, xi); model.param = [1 1]; [r1 dr] = stk_param_relik (model, xi, zi); model.param = model.param + DELTA * [0 1]; r2 = stk_param_relik (model, xi, zi); assert (stk_isequal_tolrel (dr(2), (r2 - r1) / DELTA, TOL_REL)); 9 tests, 9 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_init_lnv.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_init_lnv.m ***** test f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); ni = 20; xi = (linspace (-1, 1, ni))' + 0.2 * (randn (ni, 1)); zi = stk_feval (f, xi); model = stk_model ('stk_materncov_iso'); model.param = log ([1; 5/2; 1/0.4]); lnv = stk_param_init_lnv (model, xi, zi); assert ((isscalar (lnv)) && (lnv > -30) && (lnv < 30)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_gls.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_gls.m ***** shared xi, zi, model, beta, sigma2 xi = (1:10)'; zi = sin (xi); model = stk_model ('stk_materncov52_iso'); model.param = [0.0 0.0]; ***** test model.lm = stk_lm_constant (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, 0.1346064, 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4295288, 1e-6)) ***** test model.lm = stk_lm_affine (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (stk_isequal_tolabs (beta, [0.4728342; -0.0614960], 1e-6)) ***** assert (stk_isequal_tolabs (sigma2, 0.4559431, 1e-6)) ***** test model.lm = stk_lm_null (); [beta, sigma2] = stk_param_gls (model, xi, zi); ***** assert (isequal (beta, zeros (0, 1))) ***** assert (stk_isequal_tolabs (sigma2, 0.3977993, 1e-6)) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/param/estim/stk_param_estim.m] >>>>> /build/octave-stk-2.5.1/inst/param/estim/stk_param_estim.m ***** shared f, xi, zi, NI, param0, param1, model f = @(x)(- (0.8 * x + sin (5 * x + 1) + 0.1 * sin (10 * x)) ); DIM = 1; NI = 20; box = [-1.0; 1.0]; xi = stk_sampling_regulargrid (NI, DIM, box); SIGMA2 = 1.0; % variance parameter NU = 4.0; % regularity parameter RHO1 = 0.4; % scale (range) parameter param0 = log ([SIGMA2; NU; 1/RHO1]); model = stk_model ('stk_materncov_iso'); ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); assert (isequal (size (param1), size (param0))) ***** test % same thing, with empty lnv0 (ok) param2 = stk_param_estim (model, xi, zi, param0, []); assert (stk_isequal_tolrel (param2, param1, 1e-2)) ***** error % same thing, with lnv0 == NaN (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, nan); ***** error % same thing, with lnv0 == -inf (not ok as a starting point) param2 = stk_param_estim (model, xi, zi, param0, -inf); ***** test % same thing, with explicit value for 'criterion' param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); assert (stk_isequal_tolrel (param1, param2, 1e-2)) ***** test % noiseless zi = stk_feval (f, xi); param1 = stk_param_estim (model, xi, zi, param0); param2 = stk_param_estim (model, xi, zi, param0, [], @stk_param_relik); % We cannot assume a DETERMINISTIC optimization algorithm % (for some reason, Octave's sqp is not exactly deterministic) assert (stk_isequal_tolrel (param1, param2, 1e-2)) ***** test % noisy NOISE_STD_TRUE = 0.1; NOISE_STD_INIT = 1e-5; zi = zi + NOISE_STD_TRUE * randn(NI, 1); model.lognoisevariance = 2 * log(NOISE_STD_INIT); [param, lnv] = stk_param_estim ... (model, xi, zi, param0, model.lognoisevariance); ***** error param = stk_param_estim () ***** error param = stk_param_estim (model); ***** error param = stk_param_estim (model, xi); ***** error param = stk_param_estim (model, xi, zi, param0, log(eps), @stk_param_relik, pi); ***** test % Constant response model = stk_model ('stk_materncov52_iso'); n = 10; x = stk_sampling_regulargrid (n, 1, [0; 1]); z = ones (size (x)); param = stk_param_estim (model, x, z, model.param); assert ((all (isfinite (param))) && (length (param) == 2)); warning: Constant-response data: the output of stk_param_estim is likely to be unreliable. warning: param0 has nans, calling stk_param_init instead warning: Parameter estimation is impossible with constant-response data. 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_scientific.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_sprintf_colvect_scientific.m ***** shared x, s x = [1.2; -34567]; ***** test s = stk_sprintf_colvect_scientific(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_scientific(x, 3); ***** assert (isequal(s, ['###'; '###'])) ***** test s = stk_sprintf_colvect_scientific(x, 5); ***** assert (isequal(s, ['#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific(x, 6); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 7); ***** assert (isequal(s, [' 1e+00'; '-3e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 8); ***** assert (isequal(s, [' 1.2e+00'; '-3.5e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 9); ***** assert (isequal(s, [' 1.20e+00'; '-3.46e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 10); ***** assert (isequal(s, [' 1.200e+00'; '-3.457e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 11); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** test s = stk_sprintf_colvect_scientific(x, 12); ***** assert (isequal(s, [' 1.2000e+00'; '-3.4567e+04'])) ***** shared x, s x = [0.9; 0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, ['9e-01'; '9e-01'; '1e+00'; '1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, ['9.0e-01'; '9.1e-01'; '9.9e-01'; '1.0e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, ['9.00e-01'; '9.10e-01'; '9.90e-01'; '9.99e-01'])) ***** shared x, s x = [0.9; -0.91; 0.99; 0.999]; ***** test s = stk_sprintf_colvect_scientific (x, 4); ***** assert (isequal(s, ['####'; '####'; '####'; '####'])) ***** test s = stk_sprintf_colvect_scientific (x, 5); ***** assert (isequal(s, ['#####'; '#####'; '#####'; '#####'])) ***** test s = stk_sprintf_colvect_scientific (x, 6); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 7); ***** assert (isequal(s, [' 9e-01'; '-9e-01'; ' 1e+00'; ' 1e+00'])) ***** test s = stk_sprintf_colvect_scientific (x, 8); ***** assert (isequal(s, [' 9.0e-01'; '-9.1e-01'; ' 9.9e-01'; ' 1.0e+00'])) ***** test x = [1e6; -1e10; 1e-221]; s = stk_sprintf_colvect_scientific(x, 10); assert(isequal(s, [' 1e+006'; '-1e+010'; ' 1e-221'])); 41 tests, 41 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect_fixedpoint.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_sprintf_colvect_fixedpoint.m ***** shared x, s x = [1.2; 3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['1'; '3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['1.2'; '3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['1.20'; '3.48'])) ***** shared x, s x = [1.2; -3.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['#'; '#'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, [' 1'; '-3'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, [' 1.2'; '-3.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 6); ***** assert (isequal(s, [' 1.20'; '-3.48'])) ***** shared x, s x = [0.2; 0.48]; ***** test s = stk_sprintf_colvect_fixedpoint(x, 1); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 2); ***** assert (isequal(s, ['0'; '0'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 3); ***** assert (isequal(s, ['0.2'; '0.5'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 4); ***** assert (isequal(s, ['0.20'; '0.48'])) ***** test s = stk_sprintf_colvect_fixedpoint(x, 5); ***** assert (isequal(s, ['0.20'; '0.48'])) 32 tests, 32 passed, 0 known failure, 0 skipped [inst/misc/text/stk_sprintf_colvect.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_sprintf_colvect.m ***** shared s ***** test s = stk_sprintf_colvect ([1 1e1], 6); ***** assert (isequal (s, [' 1'; '10'])) ***** test s = stk_sprintf_colvect ([1 1e3], 6); ***** assert (isequal (s, [' 1'; '1000'])) ***** test s = stk_sprintf_colvect ([1 1e5], 6); ***** assert (isequal (s, [' 1'; '100000'])) ***** test s = stk_sprintf_colvect ([1 1e6], 6); ***** assert (isequal (s, ['1e+00'; '1e+06'])) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/misc/text/stk_disp_progress.m] >>>>> /build/octave-stk-2.5.1/inst/misc/text/stk_disp_progress.m ***** error stk_disp_progress ('toto ', 0, 1); ***** test stk_disp_progress ('toto ', 1, 1); warning: implicit conversion from numeric to char toto ***** error stk_disp_progress ('toto ', 2, 1); ***** test stk_disp_progress ('toto ', 1, 2); stk_disp_progress ('toto ', 2, 2); warning: implicit conversion from numeric to char toto toto 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/test/stk_test.m] >>>>> /build/octave-stk-2.5.1/inst/misc/test/stk_test.m ***** assert(isempty([])) % support for test assert shorthand ***** assert((1 + 1) == 2) ***** test a=1; ***** test assert(~exist('a')); ***** shared a % create a shared variable ***** test a = 3; % assign to a shared variable ***** test assert(a == 3); % variable should equal 3 in this second 'test' block ***** shared b, c % replace shared variables {'a'} --> {'b', 'c'} ***** test assert(~exist('a')); % a no longer exists ***** test assert(isempty(b)); % variables start off empty ***** shared a % recreate a shared variable that had been deleted ***** test assert (isempty(a)); % it is empty, even though it was equal to 3 before ***** shared a, b, c % creates three shared variables a = 1; b = 2; c = 3; % give values to all variables, in the same block ***** assert(isequal([a, b, c], [1, 2, 3])); % test all of them together ***** test c=6; % update a value ***** test % show that the update sticks between blocks assert(isequal([a, b, c], [1, 2, 6])); ***** shared % clear all shared variables ***** assert(~exist('a')) % show that they are cleared ***** error test % not enough input arguments ***** error test(1, 2, 3, 4) % too many input args ***** error garbage % usage on nonexistent function should be ***** error stt_test('test', 'bogus'); % undefined function error ***** error stk_test('test', 'bogus'); % error raised by stk_test itself ***** error stk_test(); ***** error stk_test('disp', 'verbose', [], 'extra arg !!!'); ***** error stk_test([]) ***** error stk_test(0.0) ***** error stk_test('stk_mindist', 0.0) ***** error stk_test('stk_mindist', 'dudule') 24 tests, 24 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolrel.m] >>>>> /build/octave-stk-2.5.1/inst/misc/test/stk_isequal_tolrel.m ***** shared r1, r2, r3, a, b, tolrel a = 1.01; b = 1.02; tolrel = 0.1; ***** error rr = stk_isequal_tolrel(); ***** error rr = stk_isequal_tolrel(a); ***** test r1 = stk_isequal_tolrel(a, b); ***** test r2 = stk_isequal_tolrel(a, b, tolrel); ***** test r3 = stk_isequal_tolrel(a, [b b]); ***** error rr = stk_isequal_tolrel(a, b, tolrel, pi); ***** test assert (isequal (r1, false)); ***** test assert (isequal (r2, true)); ***** test assert (isequal (r3, false)); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolrel(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolrel(a, b, tolrel)) 11 tests, 11 passed, 0 known failure, 0 skipped [inst/misc/test/stk_isequal_tolabs.m] >>>>> /build/octave-stk-2.5.1/inst/misc/test/stk_isequal_tolabs.m ***** shared r1, r2, a, b, tolabs a = 1.01; b = 1.02; tolabs = 0.1; ***** error rr = stk_isequal_tolabs(); ***** error rr = stk_isequal_tolabs(a); ***** test r1 = stk_isequal_tolabs(a, b); ***** test r2 = stk_isequal_tolabs(a, b, tolabs); ***** error rr = stk_isequal_tolabs(a, b, tolabs, pi); ***** test assert(~r1); ***** test assert(r2); ***** test a = struct('u', []); b = struct('v', []); assert(~ stk_isequal_tolabs(a, b)) ***** test a = struct('u', 1.01); b = struct('u', 1.02); assert(stk_isequal_tolabs(a, b, tolabs)) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_paretofind.m] >>>>> /build/octave-stk-2.5.1/inst/misc/pareto/stk_paretofind.m ***** shared x, ndpos, drank x = [ ... 0 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 1)); ***** assert (isequal (drank, [0; 1])); ***** shared x, ndpos, drank x = [ ... 3 2; ... 2 2; ... ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, 2)); ***** assert (isequal (drank, [1; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0])); ***** shared x, ndpos, drank x = [ ... 1 0; ... 2 0; ... 0 2; ... 2 2; ... -1 3; ... -1 4; ... 2 2 ]; ***** test [ndpos, drank] = stk_paretofind (x); ***** assert (isequal (ndpos, [5; 3; 1])); ***** assert (isequal (drank, [0; 3; 0; 2; 0; 1; 2])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_isdominated.m] >>>>> /build/octave-stk-2.5.1/inst/misc/pareto/stk_isdominated.m ***** test A = [1 3 2]; B = [0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 0); assert (dpos == 0); ***** test A = [1 3 2]; B = [0 0 0; 0 0 3]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 1); ***** test A = [1 3 2]; B = [0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isdom == 1); assert (dpos == 2); ***** test A = [1 3 2; 1 0 1; -1 0 0; 1 3 2]; B = [1 0 0; 0 0 3; 0 0 0]; [isdom, dpos] = stk_isdominated (A, B); assert (isequal (isdom, logical ([1; 1; 0; 1]))); assert (isequal (dpos, [3; 3; 0; 3])); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/pareto/stk_dominatedhv.m] >>>>> /build/octave-stk-2.5.1/inst/misc/pareto/stk_dominatedhv.m ***** error hv = stk_dominatedhv (); ***** error hv = stk_dominatedhv (-y, 'incorrect ref type'); ***** error hv = stk_dominatedhv (-y, [0 0]); ***** error hv = stk_dominatedhv (-y, [0 0 0 0 0], 0, 'too many input args'); ***** shared y, hv0 % Example from README.TXT in WFG 1.10 y = [ ... 0.598 0.737 0.131 0.916 6.745; ... 0.263 0.740 0.449 0.753 6.964; ... 0.109 8.483 0.199 0.302 8.872 ]; hv0 = 1.1452351120; ***** test hv = stk_dominatedhv (-y); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test yy = stk_dataframe (- y); % Check that @stk_dataframe inputs are accepted hv = stk_dominatedhv (yy); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [], 0); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (-y, [0 0 0 0 0]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test hv = stk_dominatedhv (1 - y, [1 1 1 1 1]); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** test r = stk_dominatedhv (-y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (stk_isequal_tolrel (hv, hv0, 1e-10)); ***** shared y1, y2, y0, S, S1 y0 = [1.00 1.00]; % Reference point y1 = [1.50 1.50]; % Above the reference point y2 = [0.50 0.50]; % Below the reference point ***** assert (isequal (0.00, stk_dominatedhv (y1, y0))); ***** assert (isequal (0.25, stk_dominatedhv (y2, y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y1; y2], y0))); ***** assert (isequal (0.25, stk_dominatedhv ([y2; y1; y2], y0))); ***** test S = stk_dominatedhv (y1, y0, 1); % empty decomposition ***** assert (isequal (size (S.xmin, 1), 0)); ***** test S = stk_dominatedhv (y2, y0, 1); % trivial decomposition ***** assert (isequal (S.sign, 1)); ***** assert (isequal (S.xmin, y2)); ***** assert (isequal (S.xmax, y0)); ***** test S1 = stk_dominatedhv ([y2; y0], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y1], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test S1 = stk_dominatedhv ([y2; y2], y0, 1); % shoud be the same as before ***** assert (isequal (S1, S)); ***** test for d = 1:10, y = - 0.5 * ones (1, d); hv = stk_dominatedhv (y); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** test for d = 1:10, y = - 0.5 * ones (1, d); r = stk_dominatedhv (y, [], 1); hv = sum (r.sign .* prod (r.xmax - r.xmin, 2)); assert (isequal (stk_dominatedhv (y), 0.5 ^ d)); end ***** shared y, y_ref, dv, hv0 y1 = [0.25 0.75]; y2 = [0.50 0.50]; y3 = [0.75 0.25]; y_ref = [1 1]; y = {[], y1, y2, y3; [y1; y2], [y1; y3], [y2; y3], [y1; y2; y3]}; dv = 0.25 ^ 2; hv0 = [0 3 4 3; 5 5 5 6] * dv; ***** test hv1 = stk_dominatedhv (y, y_ref); assert (isequal (hv0, hv1)); ***** test r = stk_dominatedhv (y, y_ref, 1); % Check the first decomposition, which should be empty assert (isempty (r(1).sign)); assert (isempty (r(1).xmin)); assert (isempty (r(1).xmax)); % Check the other decompositions for i = 2:6, hv2 = sum (r(i).sign .* prod (r(i).xmax - r(i).xmin, 2)); assert (isequal (hv0(i), hv2)); end ***** test y = (0.3:0.1:0.8)'; hv0 = 0.7; hv1 = stk_dominatedhv (y, 1); r = stk_dominatedhv (y, 1, true); hv2 = sum (r.sign .* prod (r.xmax - r.xmin, 2)); ***** test % four non-dominated points (hypervolume) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 HV = stk_dominatedhv (zi(P(i, :), :), zr, 0); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.20000 0.80000 0.40000 0.60000 0.60000 0.40000 0.80000 0.20000 ***** test % four non-dominated points (decomposition) zr = [1 1]; zi = [0.2 0.8; 0.4 0.6; 0.6 0.4; 0.8 0.2] P = perms (1:4); for i = 1:24 S = stk_dominatedhv (zi(P(i, :), :), zr, 1); HV = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (stk_isequal_tolrel (HV, 0.4, 1e-15)); end zi = 0.20000 0.80000 0.40000 0.60000 0.60000 0.40000 0.80000 0.20000 ***** test % a case with 8 points and 5 objectives % http://sourceforge.net/p/kriging/tickets/33 yr = [1.03 0.91 0.96 1.99 16.2]; y = [ ... 0.8180 0.5600 0.1264 1.0755 1.2462; ... 0.8861 0.6928 0.2994 0.7228 0.9848; ... 0.9021 0.8829 0.6060 0.1642 0.4282; ... 0.9116 0.3097 0.8601 0.0468 0.2813; ... 0.9306 0.1429 0.6688 0.1462 1.3661; ... 0.9604 0.3406 0.4046 0.7239 1.8741; ... 0.9648 0.7764 0.5199 0.4098 1.3436; ... 0.9891 0.4518 0.7956 0.1164 1.2025]; hv1 = stk_dominatedhv (y, yr, 0); S = stk_dominatedhv (y, yr, 1); hv2 = sum (S.sign .* prod (S.xmax - S.xmin, 2)); assert (isequal (size (S.sign), [87 1])); assert (isequal (size (S.xmin), [87 5])); assert (isequal (size (S.xmax), [87 5])); assert (stk_isequal_tolrel (hv1, 1.538677420906463, 2 * eps)); assert (stk_isequal_tolrel (hv1, hv2, eps)); ***** test % with random data NREP = 5; for p = 1:5 for n = 1:10 for i = 1:NREP % Draw random data y = rand (n, p); y = - y ./ (norm (y)); % Compute hypervolume directly hv1 = stk_dominatedhv (y, [], 0); % Compute decomposition, then hypervolume R = stk_dominatedhv (y, [], 1); hv2 = sum (R.sign .* prod (R.xmax - R.xmin, 2)); % Compare results assert (stk_isequal_tolabs (hv1, hv2, eps)); end end end 35 tests, 35 passed, 0 known failure, 0 skipped [inst/misc/parallel/@stk_parallel_engine_parfor/stk_parallel_engine_parfor.m] >>>>> /build/octave-stk-2.5.1/inst/misc/parallel/@stk_parallel_engine_parfor/stk_parallel_engine_parfor.m ***** test if exist ('matlabpool') || exist ('parpool') stk_test_class ('stk_parallel_engine_parfor') end 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m] >>>>> /build/octave-stk-2.5.1/inst/misc/parallel/@stk_parallel_engine_none/stk_parallel_engine_none.m ***** test stk_test_class ('stk_parallel_engine_none') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_unc.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_optim_testmin_unc.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_unc'); ***** error b = stk_optim_testmin_unc (); ***** error b = stk_optim_testmin_unc (algo, 33.51); ***** assert (stk_optim_testmin_unc (algo)); ***** assert (~ stk_optim_testmin_unc ('dudule')); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_optim_testmin_box.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_optim_testmin_box.m ***** shared algo algo = stk_options_get ('stk_param_estim', 'minimize_box'); ***** error b = stk_optim_testmin_box (); ***** error b = stk_optim_testmin_box (algo, 33.51); ***** assert (stk_optim_testmin_box (algo)); ***** assert (~ stk_optim_testmin_box ('dudule')); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_unconstrained.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_minimize_unconstrained.m ***** test % Call fminsearch using function name if stk_optim_isavailable ('fminsearch') assert (stk_optim_testmin_unc ('fminsearch')); end ***** test % Call fminsearch directly, using algorithm object if stk_optim_isavailable ('fminsearch') algo = stk_optim_fminsearch ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_unc (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_unc ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_unc (algo)); end ***** error assert (stk_optim_testmin_unc ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_unc (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/optim/stk_minimize_boxconstrained.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/stk_minimize_boxconstrained.m ***** test % Call fmincon using function name if stk_optim_isavailable ('fmincon') assert (stk_optim_testmin_box ('fmincon')); end ***** test % Call fmincon directly, using algorithm object if stk_optim_isavailable ('fmincon') algo = stk_optim_fmincon ('TolX', 1e-12, 'TolFun', 1e-12); assert (stk_optim_testmin_box (algo)); end ***** test % Call sqp using function name if stk_optim_isavailable ('octavesqp') assert (stk_optim_testmin_box ('octavesqp')); end ***** test % Call sqp directly, using algorithm object if stk_optim_isavailable ('octavesqp') algo = stk_optim_octavesqp (); assert (stk_optim_testmin_box (algo)); end ***** error assert (stk_optim_testmin_box ('InexistentOptimizer')); ***** error assert (stk_optim_testmin_box (100)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_octavesqp/stk_optim_octavesqp.m ***** test stk_test_class ('stk_optim_octavesqp') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_fminsearch/stk_optim_fminsearch.m ***** test stk_test_class ('stk_optim_fminsearch') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_fmincon/stk_optim_fmincon.m ***** test stk_test_class ('stk_optim_fmincon') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/optim/@stk_optim_baseclass/stk_optim_baseclass.m] >>>>> /build/octave-stk-2.5.1/inst/misc/optim/@stk_optim_baseclass/stk_optim_baseclass.m ***** test stk_test_class ('stk_optim_baseclass') 1 test, 1 passed, 0 known failure, 0 skipped [inst/misc/error/stk_error.m] >>>>> /build/octave-stk-2.5.1/inst/misc/error/stk_error.m ***** shared errmsg, mnemonic, badstack errmsg = 'Go ahead, make my day.'; mnemonic = 'ClintEastwood'; badstack = 0; % not a valid stack structure ***** error stk_error(errmsg, mnemonic); ***** error stk_error (errmsg, mnemonic, badstack); ***** error id=STK:stk_error:InvalidArgument stk_error (errmsg, mnemonic, badstack); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_pdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_student_pdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_pdf ([1; 3], [1; 2], [0 1], [1 10]), ... [0.50 / pi ... % tpdf ((1 - 1) / 10, 1) 0.10 / pi; ... % tpdf ((1 - 1) / 10, 1) / 10 1 / (11 * sqrt(11)) ... % tpdf ((3 - 0) / 1, 2) / 1 3.4320590294804165e-02 ... % tpdf ((3 - 1) / 10, 2) / 10 ], eps)); ***** assert (isequal (stk_distrib_student_pdf ( inf, 1.0), 0.0)); ***** assert (isequal (stk_distrib_student_pdf (-inf, 1.0), 0.0)); ***** assert (isnan (stk_distrib_student_pdf ( nan, 1.0))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_ei.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_student_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_student_ei (0, 2), 1 / sqrt (2), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_student_ei (linspace (-10, 10, 200), 3.33); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei, nu M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); nu = 2; ei = stk_distrib_student_ei (M, nu, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_student_ei (M, nu, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_student_ei (-M, nu, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_student_cdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_student_cdf.m ***** assert (stk_isequal_tolrel ( ... stk_distrib_student_cdf ([-1; 0; 1], [1 2], 0, [1 10]), ... [0.25, ... % tcdf ((-1 - 0)/1, 1) 4.6473271920707004e-01; ... % tcdf ((-1 - 0)/10, 2) 0.50, ... % tcdf (( 0 - 0)/1, 1) 0.50; ... % tcdf (( 0 - 0)/10, 2) 0.75, ... % tcdf (( 1 - 0)/1, 1) 5.3526728079292996e-01 ... % tcdf (( 1 - 0)/10, 2) ], 4 * eps)) ***** test [p, q] = stk_distrib_student_cdf (1e10, 2); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 4.999999999999999999925e-21, 10 * eps)); ***** assert (isequal (stk_distrib_student_cdf (0.0, 1), 0.5)); ***** assert (isequal (stk_distrib_student_cdf (inf, 1), 1.0)); ***** assert (isequal (stk_distrib_student_cdf (-inf, 1), 0.0)); ***** assert (isnan (stk_distrib_student_cdf (nan, 1))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_pdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_pdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_pdf ([1; 3], 1, [1 10]), ... [1 / sqrt(2 * pi) ... % normpdf ((1 - 1) / 1) 0.1 / sqrt(2 * pi); ... % normpdf ((1 - 1) / 10) / 10 exp(-2) / sqrt(2 * pi) ... % normpdf ((3 - 1) / 1) 3.910426939754558780e-2 ... % normpdf ((3 - 1) / 10) / 10 ], eps)); ***** assert (isequal (stk_distrib_normal_pdf (inf), 0.0)); ***** assert (isequal (stk_distrib_normal_pdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_pdf (nan))); ***** assert (isnan (stk_distrib_normal_pdf (0, 0, -1))); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_ei.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_ei.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_ei (0.0), 1 / sqrt (2 * pi), eps)) ***** test % Decreasing as a function of z ei = stk_distrib_normal_ei (linspace (-10, 10, 200)); assert (all (diff (ei) < 0)) ***** shared M, mu, sigma, ei M = randn (1, 10); mu = randn (5, 1); sigma = 1 + rand (1, 1, 7); ei = stk_distrib_normal_ei (M, mu, sigma); ***** assert (isequal (size (ei), [5, 10, 7])) ***** assert (all (ei(:) >= 0)) ***** assert (isequal (ei, stk_distrib_normal_ei (M, mu, sigma, false))); ***** assert (isequal (ei, stk_distrib_normal_ei (-M, -mu, sigma, true))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_crps.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_crps.m ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 0.0), 0.0)) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (0.0, 0.0, 1.0), (sqrt(2) - 1)/sqrt(pi))) ***** shared n, x_obs, mu, sigma, crps, crps_exp x_obs = [ 1.78; -2.29; -1.62; -5.89; 2.88; 0.65; 2.74; -3.42]; % observations mu = [-0.31; -0.59; 1.48; -1.57; -0.05; -0.27; 1.05; 1.27]; % predictions sigma = [ 2.76; 6.80; 1.63; 1.19; 4.98; 9.60; 5.85; 2.24]; % standard dev n = size(x_obs, 1); crps = stk_distrib_normal_crps (x_obs, mu, sigma); ***** assert (isequal (size (crps), [n, 1])) ***** assert (all (crps >= 0)) ***** assert (stk_isequal_tolabs (crps, stk_distrib_normal_crps(mu, x_obs, sigma))) ***** assert (stk_isequal_tolabs (stk_distrib_normal_crps (x_obs, mu, 0), abs (x_obs - mu))) crps_ref = [ ... 1.247856605928301 ... 1.757798727719891 ... 2.216236225997414 ... 3.648696666764968 ... 1.832355265287495 ... 2.278618297947438 ... 1.560544734359158 ... 3.455697443411153 ]; assert (stk_isequal_tolabs (crps, crps_ref, 1e-10)); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_normal_cdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_normal_cdf.m ***** assert (stk_isequal_tolrel (stk_distrib_normal_cdf ([1; 3], 1, [1 10]), ... [0.5, ... % normcdf ((1 - 1) / 1) 0.5; ... % normcdf ((1 - 1) / 10) 0.5 * erfc(-sqrt(2)), ... % normcdf ((3 - 1) / 1) 0.5 * erfc(-0.1*sqrt(2)) ... % normcdf ((3 - 1) / 10) ], eps)); ***** test [p, q] = stk_distrib_normal_cdf (10); assert (isequal (p, 1.0)); assert (stk_isequal_tolrel (q, 7.6198530241604975e-24, eps)); ***** assert (isequal (stk_distrib_normal_cdf ( 0.0), 0.5)); ***** assert (isequal (stk_distrib_normal_cdf ( inf), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (-inf), 0.0)); ***** assert (isnan (stk_distrib_normal_cdf ( nan))); ***** assert (isnan (stk_distrib_normal_cdf (0, 0, -1))); ***** assert (isequal (stk_distrib_normal_cdf (0, 0, 0), 1.0)); ***** assert (isequal (stk_distrib_normal_cdf (0, 1, 0), 0.0)); ***** assert (isequal (stk_distrib_normal_cdf (1, 0, 0), 1.0)); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/distrib/stk_distrib_bivnorm_cdf.m] >>>>> /build/octave-stk-2.5.1/inst/misc/distrib/stk_distrib_bivnorm_cdf.m ***** test z1 = [0 1; -1 2]; z2 = [0 1; 1 -2]; z = cat (3, z1, z2); % 2 x 2 x 2 mu1 = 0; % 1 x 1 x 1 mu2 = [0 1]; % 1 x 2 x 1 sigma1 = [1 3]; % 1 x 2 x 1 sigma2 = [1; 2]; % 2 x 1 x 1 rho = [0; 0.5]; % 2 x 1 x 1 %% BROADCASTING => the result will be a 2 x 2 matrix p = stk_distrib_bivnorm_cdf (z, mu1, mu2, sigma1, sigma2, rho); p11 = 0.25; % mvncdf ([ 0 0], [0 0], [1 0; 0 1]); p12 = 0.315279329909118; % mvncdf ([ 1 1], [0 1], [9 0; 0 1]); p21 = 0.146208349559646; % mvncdf ([-1 1], [0 0], [1 1; 1 4]); p22 = 0.064656239880040; % mvncdf ([ 2 -2], [0 1], [9 3; 3 4]); assert (stk_isequal_tolabs (p, [p11 p12; p21 p22], 1e-14)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf -10], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 0], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf 10], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-inf inf], 0, 0, 1, 1, 0); assert ((p == 0.0) && (q == 1.0)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([-10 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 7.619853024160489e-24, 1e-12)) assert (q == 1.0) ***** test [p, q] = stk_distrib_bivnorm_cdf ([0 inf], 0, 0, 1, 1, 0); assert (stk_isequal_tolrel (p, 0.5, 1e-12)) assert (stk_isequal_tolrel (q, 0.5, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([10 inf], 0, 0, 1, 1, 0); assert (p == 1.0); assert (stk_isequal_tolrel (q, 7.619853024160489e-24, 1e-12)) ***** test [p, q] = stk_distrib_bivnorm_cdf ([inf inf], 0, 0, 1, 1, 0); assert ((p == 1.0) && (q == 0.0)) ***** test % A mixture of singular and non-singular cases p = stk_distrib_bivnorm_cdf ([0 0], 0, 0, [1; 0], 1, 0); assert (isequal (p, [0.25; 0.5])); 12 tests, 12 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_mindist.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_mindist.m ***** test d = 3; x = rand(7, d); md1 = stk_mindist(x); md2 = stk_mindist(stk_dataframe(x)); assert(stk_isequal_tolabs(md1, md2)); ***** test for nc = [0 5 10], x = zeros(0, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nc = [0 5 10], x = rand(1, nc); d = stk_mindist(x); assert(isempty(d)); end ***** test for nr = [2 5 10], x = zeros(nr, 0); d = stk_mindist(x); assert(isequal(d, 0.0)); end ***** test nrep = 20; TOL_REL = 1e-15; for irep = 1:nrep, n = 2 + floor(rand * 10); d = 1 + floor(rand * 10); x = rand(n, d); z = stk_mindist(x); assert(isequal(size(d), [1, 1])); assert(~isnan(d)); assert(~isinf(d)); % check the result mindist = Inf; for i = 1:(n-1), for j = (i+1):n, mindist = min(mindist, norm(x(i,:) - x(j,:))); end end assert(abs(z - mindist) <= TOL_REL * mindist); end 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_gpquadform.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_gpquadform.m ***** shared x, y, z, rx, ry, rz x = rand(5, 2); rx = rand(5, 2) + 1; y = rand(6, 2); ry = rand(6, 2) + 1; z = rand(5, 3); rz = rand(5, 3) + 1; ***** error Q = stk_gpquadform(x, ry, y, ry) ***** error Q = stk_gpquadform(x, rz, y, ry) ***** error Q = stk_gpquadform(x, rx, y, rx) ***** error Q = stk_gpquadform(x, rx, y, rz) ***** error Q = stk_gpquadform(x, rx, z, ry) ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 1/sqrt(2) * ones (11, 5); y = zeros (13, 5); ry = 1/sqrt(2) * ones (13, 5); z = ones ( 7, 5); rz = 1/sqrt(2) * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5 * ones(11, 7))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); y = randn(5, 3); ry = 1 + rand(5, 3); Q1 = stk_gpquadform(x, y, rx, ry, true); % pairwise Q2 = stk_gpquadform(x, y, rx, ry, false); assert(isequal(size(Q1), [5 1])); assert(isequal(size(Q2), [5 5])); assert(stk_isequal_tolabs(Q1, diag(Q2))); ***** test x = randn(5, 3); rx = 1 + rand(5, 3); Q1 = stk_gpquadform(x, [], rx, [], true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); Q1 = stk_gpquadform(x, x, rx, rx, true); % pairwise assert(stk_isequal_tolabs(Q1, zeros(5, 1))); ***** shared x, y, z, rx, ry, rz x = zeros (11, 5); rx = 2 * ones (11, 5); y = zeros (13, 5); ry = 2 * ones (13, 5); z = ones ( 7, 5); rz = 2 * ones ( 7, 5); ***** test Qx = stk_gpquadform(x, [], rx); assert(isequal(Qx, zeros(11))); ***** test Qxx = stk_gpquadform(x, x, rx, rx); assert(isequal(Qxx, zeros(11))); ***** test Qxy = stk_gpquadform(x, y, rx, ry); assert(isequal(Qxy, zeros(11, 13))); ***** test Qzz = stk_gpquadform(z, [], rz); assert(isequal(Qzz, zeros(7))); ***** test Qxz = stk_gpquadform(x, z, rx, rz); assert(stk_isequal_tolabs(Qxz, 5/8 * ones(11, 7))); 17 tests, 17 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_exact.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_filldist_exact.m ***** test d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist_exact(x, box); fd2 = stk_filldist_exact(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist_exact(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist_exact(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 4 tests, 4 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist_discretized.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_filldist_discretized.m ***** error stk_filldist_discretized(0.0) % incorrect nb of arguments ***** error stk_filldist_discretized(0.0, 0.0, pi) % incorrect nb of arguments ***** error stk_filldist_discretized(0.0, []) % second arg is empty ***** error stk_filldist_discretized([], 0.0) % first arg is empty ***** test d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist_discretized(x, y); fd2 = stk_filldist_discretized(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; for dim = 1:10, x = rand(n, dim); fd = stk_filldist_discretized(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test for dim = 1:10, x = rand(1, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, norm(x - y))); end ***** test n = 4; for dim = 2:10, x = zeros(n, dim); y = rand(1, dim); fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, max(stk_dist(x, y)))); end ***** test for dim = [1 3 6], x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist_discretized(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 10 tests, 10 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_filldist.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_filldist.m ***** test %%% exact d = 3; x = rand(7, d); box = repmat([0; 1], 1, d); fd1 = stk_filldist(x, box); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(box)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test %%% discretized d = 3; x = rand(7, d); y = rand(20, d); fd1 = stk_filldist(x, y); fd2 = stk_filldist(stk_dataframe(x), stk_dataframe(y)); assert(stk_isequal_tolabs(fd1, fd2)); ***** test n = 5; % must be bigger than 2 for dim = 1:10, x = rand(n, dim); fd = stk_filldist(x, x); assert(stk_isequal_tolabs(fd, 0.0)); end ***** test %%% exact for dim = 1:6, x = 0.5 * ones(1, dim); fd = stk_filldist(x); % [0; 1]^d is the default box assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test %%% discretized for dim = 1:6, x = 0.5 * ones(1, dim); y = stk_sampling_regulargrid(2^dim, dim); % [0; 1]^d is the default box fd = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test for dim = [1 3 7], box = repmat([1; 2], 1, dim); x = 1 + 0.5 * ones(1, dim); fd = stk_filldist(x, box); assert(stk_isequal_tolabs(fd, 0.5 * sqrt(dim))); end ***** test dim = 3; box = repmat([-1; 1], 1, dim); x = stk_sampling_randunif(20, dim, box); y = stk_sampling_regulargrid(3^dim, dim, box); fd1 = stk_filldist(x, box); fd2 = stk_filldist(x, y); assert(fd1 >= fd2 - 10 * eps); ***** test %%% exact for dim = [1 3 7], x = zeros(1, dim); [fd, ymax] = stk_filldist_exact(x); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end ***** test %%% discretized for dim = [1 3 7], x = zeros(1, dim); y = stk_sampling_regulargrid(3^dim, dim); [fd, ymax] = stk_filldist(x, y); assert(stk_isequal_tolabs(fd, sqrt(dim))); assert(stk_isequal_tolabs(ymax, ones(1, dim))); end 9 tests, 9 passed, 0 known failure, 0 skipped [inst/misc/dist/stk_dist.m] >>>>> /build/octave-stk-2.5.1/inst/misc/dist/stk_dist.m ***** error stk_dist(); ***** error stk_dist(0, 0, 0); ***** error stk_dist(0, 0, 0, 0); ***** error stk_dist(0, ones(1, 2)); ***** error stk_dist(eye(3), ones(1, 2)); ***** error stk_dist(ones(2, 1), zeros(2)); ***** shared x, y, z x = zeros(11, 5); y = zeros(13, 5); z = ones(7, 5); ***** test Dx = stk_dist(x); assert(isequal(Dx, zeros(11))); ***** test Dxx = stk_dist(x, x); assert(isequal(Dxx, zeros(11))); ***** test Dxy = stk_dist(x, y); assert(isequal(Dxy, zeros(11, 13))); ***** test Dzz = stk_dist(z, z); assert(isequal(Dzz, zeros(7))); ***** test Dxz = stk_dist(x, z); assert(stk_isequal_tolabs(Dxz, sqrt(5)*ones(11, 7))); ***** test x = randn(5,3); y = randn(5,3); D1 = stk_dist(x, y, true); % pairwise D2 = stk_dist(x, y); assert(stk_isequal_tolabs(D1, diag(D2))); ***** test x = randn(5,3); D1 = stk_dist(x, [], true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); D1 = stk_dist(x, x, true); % pairwise assert(stk_isequal_tolabs(D1, zeros(5, 1))); 13 tests, 13 passed, 0 known failure, 0 skipped [inst/misc/design/stk_phipcrit.m] >>>>> /build/octave-stk-2.5.1/inst/misc/design/stk_phipcrit.m ***** shared x x = [0, 0.2, 0.4, 0.6, 0.8, 1.0; 0, 0.6, 0.8, 1.0, 0.2, 0.4]'; ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 10), 3.946317664423303, 1e-15)) ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 50), 3.614077252813102, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 100), 3.574589859827413, 1e-15)); ***** assert (stk_isequal_tolabs ... (stk_phipcrit (x, 1e9), 1 / stk_mindist (x), 1e-8)); ***** assert (isequal (stk_phipcrit (ones (2)), Inf)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/misc/design/stk_maxabscorr.m] >>>>> /build/octave-stk-2.5.1/inst/misc/design/stk_maxabscorr.m ***** assert (stk_isequal_tolabs (0.0, ... % Test on an OLHS(5) stk_maxabscorr ([0.4 0.8 0 -0.4 -0.8; -0.8 0.4 0 0.8 -0.4]'))); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/stk_lm_polynomial.m] >>>>> /build/octave-stk-2.5.1/inst/lm/stk_lm_polynomial.m ***** error lm = stk_lm_polynomial (); ***** error lm = stk_lm_polynomial (0, 3.33); ***** test lm = stk_lm_polynomial (-1); assert (isa (lm, 'stk_lm_null')); ***** test lm = stk_lm_polynomial (0); assert (isa (lm, 'stk_lm_constant')); ***** test lm = stk_lm_polynomial (1); assert (isa (lm, 'stk_lm_affine')); ***** test lm = stk_lm_polynomial (2); assert (isa (lm, 'stk_lm_quadratic')); ***** test lm = stk_lm_polynomial (3); assert (isa (lm, 'stk_lm_cubic')); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_quadratic/stk_lm_quadratic.m ***** test stk_test_class ('stk_lm_quadratic') ***** error lm = stk_lm_quadratic (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_quadratic/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_quadratic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_quadratic (), x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/stk_lm_null.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_null/stk_lm_null.m ***** test stk_test_class ('stk_lm_null') ***** error lm = stk_lm_null (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_null/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_null/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_null (), x); assert (isequal (size (P), [n, 0])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_matrix/stk_lm_matrix.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_matrix/stk_lm_matrix.m ***** test stk_test_class ('stk_lm_matrix') ***** error lm = stk_lm_matrix ([], 3.33); ***** test %%% dim 1 data = rand (10, 1); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); ***** test %%% dim 3 data = rand (10, 3); idx = 3:7; lm = stk_lm_matrix (data); assert (isa (lm, 'stk_lm_matrix')); assert (isequal (data(idx, :), feval (lm, idx))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/stk_lm_cubic.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_cubic/stk_lm_cubic.m ***** test stk_test_class ('stk_lm_cubic') ***** error lm = stk_lm_cubic (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_cubic/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_cubic/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_cubic (), x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/stk_lm_constant.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_constant/stk_lm_constant.m ***** test stk_test_class ('stk_lm_constant') ***** error lm = stk_lm_constant (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_constant/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_constant/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_constant (), x); assert (isequal (size (P), [n, 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/stk_lm_affine.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_affine/stk_lm_affine.m ***** test stk_test_class ('stk_lm_affine') ***** error lm = stk_lm_affine (3.33); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/lm/@stk_lm_affine/feval.m] >>>>> /build/octave-stk-2.5.1/inst/lm/@stk_lm_affine/feval.m ***** test n = 15; d = 4; x = stk_sampling_randunif (n, d); P = feval (stk_lm_affine (), x); assert (isequal (size (P), [n, d + 1])); 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testfun_goldsteinprice.m] >>>>> /build/octave-stk-2.5.1/inst/examples/test_functions/stk_testfun_goldsteinprice.m ***** test % Use with nargin == 0 for visualisation stk_testfun_goldsteinprice (); close all; ***** assert (stk_isequal_tolabs ... (stk_testfun_goldsteinprice ([0, -1]), 3.0, 1e-12)) 2 tests, 2 passed, 0 known failure, 0 skipped [inst/examples/test_functions/stk_testcase_truss3.m] >>>>> /build/octave-stk-2.5.1/inst/examples/test_functions/stk_testcase_truss3.m ***** shared tc, xd, n tc = stk_testcase_truss3 (); n = 5; xd = stk_sampling_randunif (n, [], tc.search_domain); ***** test v = stk_testfun_truss3_vol (xd, tc.constants); z = stk_testfun_truss3_bb (xd, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); ***** test F = stk_dataframe (zeros (n, 2), {'F1' 'F2'}); F(:, 1) = tc.constants.F1_mean + tc.constants.F1_std * randn (n, 1); F(:, 2) = tc.constants.F2_mean + tc.constants.F2_std * randn (n, 1); x = [xd F]; v = stk_testfun_truss3_vol (x, tc.constants); z = stk_testfun_truss3_bb (x, tc.constants); assert (isequal (size (v), [n 1])); assert (isequal (size (z), [n 5])); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc04.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc04.m ***** test stk_example_misc04; close all; #==========================# # stk_example_misc04 # #==========================# 'stk_example_misc04' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc04.m STK_EXAMPLE_MISC04 Pareto front simulation DESCRIPTION We consider a bi-objective optimization problem, where the objective functions are modeled as a pair of independent stationary Gaussian processes with a Matern 5/2 anisotropic covariance function. Figure (a): represent unconditional realizations of the Pareto front and and estimate of the probability of being non-dominated at each point of the objective space. Figure (b): represent conditional realizations of the Pareto front and and estimate of the posteriorior probability of being non-dominated at each point of the objective space. EXPERIMENTAL FUNCTION WARNING This script uses the stk_plot_probdom2d function, which is currently considered an experimental function. Read the help for more information. REFERENCE [1] Michael Binois, David Ginsbourger and Olivier Roustant, Quantifying uncertainty on Pareto fronts with Gaussian Process conditional simu- lations, European J. of Operational Research, 2043(2):386-394, 2015. See also: stk_plot_probdom2d Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. simulated Pareto fronts Proba. of being dominated 2000 |------------------------| 3000 +---++-+-+-+-++---+ +||100% | +@*@+$&*=$=&==%##====| | | | | | | | | | || | @*@ $&*$$ & %## | + + + + + + + + + || | @*@ $&*$$ & %## | 2000 +---+ +---+ || 1000 |-+ @*@ $&*$$ & %## +-| | | || | @@@@@&@@@@@@@@@@@@@@| | | +||75% | %*@ $&*$$#&&&%&#&&&&| 1000 +---+ +---+ || 0 |-+ %*@ $&*&$&&&&%######| | | || | %*@ $&*$$$$$$%$$$$$$| 0 +---+ +---+ || | %%@%%&*%$$$$$%$$$second objective | +||50% | @ &* $$$$$%$$$$$$| -1000 +---+ +---+ || -1000 |-+ @**&&&&&&&&&&&&&&&| | | || | @@@@*@@@@@@%%%%%%%| -2000 +---+ +---+ || | **************| | | || | ==============| | | +||25% -2000 |-+ %%%%%%%| -3000 +---+ +---+ || | | + + + + + + + + + || | | | | | | | | | | | || -3000 |-+ + + + + + +-| -4000 +---++-+-+-+-++---+ || |------------------------| -4-30-2-10010200304000+||0% -300-200-1000 0100020003000 first objective 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc03.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc03.m ***** test stk_example_misc03; close all; #==========================# # stk_example_misc03 # #==========================# 'stk_example_misc03' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc03.m STK_EXAMPLE_MISC03 How to deal with (known) seasonality Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = 2.2952 -1.9136 lognoisevariance = -4.5820 model2 = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = @(t) [ones(length (t), 1), sin(2 * pi * t / T0), cos(2 * pi * t / T0)] dim = 1 param = -7.4935 -3.1895 lognoisevariance = -4.5748 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc02.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc02.m ***** test stk_example_misc02; close all; #==========================# # stk_example_misc02 # #==========================# 'stk_example_misc02' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc02.m STK_EXAMPLE_MISC02 How to use priors on the covariance parameters A Matern covariance in dimension one is considered as an example. A Gaussian prior is used for all three parameters: log-variance, log-regularity and log- inverse-range. The corresponding parameter estimates are Maximum A Posteriori (MAP) estimates or, more precisely, Restricted MAP (ReMAP) estimates. Several values for the variance of the prior are successively considered, to illustrate the effect of this prior variance on the parameter estimates. When the variance is small, the MAP estimate is close to the mode of the prior. On the other hand, when the variance is large, the prior becomes "flat" and the MAP estimate is close to the ReML estimate (see figure b). Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. prior std = 10.00 prior std = 1.00 3 |-+ 4 |-+ #### |%%## ####%%%% 3 |-+# ##%%%%% 2 |-+&&&%&&&%# #%&&&&&&&& 2 |-+&&% #%%% %%&&&&&&& 1 |-+X==GG==&&%###&&&XXXXXX& 1 |-+X&&GG==&&% &&&&XXXXX& |====predicted output z=== |======&&====G=G========== 0 |-+&&& %&&&&&&&&&&XXXXXX& 0 |-+&&& %&&&&&&&&&&XXXXXX& -1 |-+%# #### #%&&&&&&&& -1 |-+%# #%&&&&&&&& |# + + + ##+####+ -2 |-+ + + + ##+%%%%+ -2 |------------------------- -3 |------------------------- 0 prior std = 0.20.8 1 0 prior std = 0.01.8 1 input x input x 6 |-+ 6 |-+ | ### | # 4 |-+ #%%%%%% 4 |-+ #%%%%% 2 |-+%# #&&% %&&&&&&&& 2 |-+ %%# #&&&&&&&& |X&&=predicted output z=== |&&&&=GG=====#%=========== 0 |-+==& %&&=G=G&&&&XXXXX& 0 |-+=== %&=G=G&&&&&&XXX& -2 |-+&% #%&&&&&&& -2 |-+&# #%%&&&&& |%# + + + +#%%%+ |## + + + +###%+ -4 |------------------------- -4 |------------------------- 0 0.2 0.4 0.6 0.8 1 0 0.2 0.4 0.6 0.8 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/03_miscellaneous/stk_example_misc01.m] >>>>> /build/octave-stk-2.5.1/inst/examples/03_miscellaneous/stk_example_misc01.m ***** test stk_example_misc01; close all; #==========================# # stk_example_misc01 # #==========================# 'stk_example_misc01' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/03_miscellaneous/stk_example_misc01.m STK_EXAMPLE_MISC01 Several correlation functions from the Matern family The Matern 1/2 correlation function is also known as the "exponential correla- tion function". This is the correlation function of an Ornstein-Ulhenbeck pro- cess. The Matern covariance function tends to the Gaussian correlation function when its regularity (smoothness) parameter tends to infinity. See also: stk_materncov_iso, stk_materncov_aniso Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe05.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe05.m ***** test stk_example_doe05; close all; #=========================# # stk_example_doe05 # #=========================# 'stk_example_doe05' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe05.m STK_EXAMPLE_DOE05 A simple illustration of 1D Bayesian optimization Our goal here is to minimize the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi], using noisy evaluations. Evaluations points are chosen sequentially using either AKG criterion (default) or the EQI criterion (set SAMPCRIT_NAME to 'EQI'); Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 20 |-+ 15 |-+ ##%%%%%%## ##### ###### ##### 10 |-+&&&&&&&&&&&&&&&&&&&&%%## #%%&====&&&&&&&&&&&%%# 5 |-+&XX*********G***XXXX&&&&&%# #%======XX****G****XX&&&&&%# z 0 |-+****===========********X&&=====*******X&&&&===******X&&&&% -5 |-+&&&&&&&&&%%###%&=======****G****XXX&&&&&%# #%&===XX******G -10 |-+###%%#### ##%%&&&&&&&&&&&&&&&&&%%# #%=========& -15 |-+ + +####### + ###### + +###%%%%##+ -20 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.25 |-----------------------------------------------------------| | + + * + + + F | 0.2 |-+ **** * *+-| 0.15 |-+ * ** **** * *-| AKG | * * ** * ** * | 0.1 |-+ * * ** * * **| 0.05 |-+ ** ** ** * +*| | + ** + *+ +** | 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 20 |-+ 15 |-+ ######## ###### 10 |-+%%&&&&&&&&&%##%%%%%%%## ##%%&&&&&&%## 5 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#&&=GGGGG*G** -15 |-+ #### + +#%%%%%%# + ########+ + #%%%%# + -20 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.2 |-----------------------------------------------------------| | + + + + + | 0.15 |-+ *F-| | *** *** | AKG 0.1 |-+ ** * * +*| | ** * * * *| 0.05 |-+ ****** ** ** +-| | + +** ** + ***** + **+ * | 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 20 |-+ ##### ### 15 |-+#%%%%&&%%%# ###%%### #%%%%%%%% 10 |-+&&&&&&&&&&&&&&&&&&&&&&%%# #%&&&====&&&&%# 5 |-+XXX*********G***XXXXX&&&&%# #%======******G*&&% z 0 |-+****===========********X&&====******XXX&&&&****&% -5 |-+&&&&&&&&&&%###&&======*****G***XXXX&&&&%%##%&&***&# %&G -10 |-+#%%%%%%%## #%&&&&&&&&&&&&&&&&&&&%%# #&&*GGGGGGG** -15 |-+ #### + +#%%%%%%# + ########+ + G%&&% + -20 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.1 |-----------------------------------------------------------| | + + + + + * F* | 0.08 |-+ * * **-| 0.06 |-+ * * * *-| AKG | ** * * * *| 0.04 |-+ * * * ** +*| 0.02 |-+ * * * ** +*| | + +* ** + ***** + ** ** *| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 20 |-+ ####### ##### 15 |-+#%%%&&&&%%# ##%%%%### #%%%&&%%%# 10 |-+&&&&XXX&&&&&&&&&&&&&&&%%# #%&&&====&&&&%# 5 |-+XXX*********G***XXXXX&&&&%# #&======******G*&&% z 0 |-+****===========********X&&====******XXX&&&&****&# -5 |-+&&&&&&&&&&%###&&======*****G***XXXX&&&&%%##%&&***& #&G -10 |-+%%%%%%%%## #%&&&&&&&&&&&&&&&&&&&%%# #&&*GGGGGGG** -15 |-+ #####+ +%%%%%%%# + ###%%###+ + G&&&G + -20 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.1 |-----------------------------------------------------------| | + + + + + F* ** | 0.08 |-+ ** **-| 0.06 |-+ * * * *-| AKG | *** * ** * | 0.04 |-+ ** * * ** +*| 0.02 |-+ * * ** ** +*| | + +* ** + ****** + +* ** *| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 20 |-+ ####### ##### 15 |-+##%%%%%%%%# #%%%%%%%# 10 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0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 : x z init001 : 0.00000 1.4578 init002 : 3.00000 4.4765 init003 : 6.00000 -4.7230 init004 : 9.00000 5.0276 init005 : 12.00000 -7.4990 xg(187) : 11.21608 -11.9086 xg(182) : 10.91457 -9.5970 xg(195) : 11.69849 -11.0060 xg(180) : 10.79397 -9.4522 xg(200) : 12.00000 -6.4182 xg(175) : 10.49246 -8.4112 xg(175) : 10.49246 -10.6880 xg(193) : 11.57789 -8.1919 xg(193) : 11.57789 -9.4047 xg(176) : 10.55276 -10.2239 xg(192) : 11.51759 -10.9358 xg(192) : 11.51759 -9.9923 xg(177) : 10.61307 -13.0733 xg(191) : 11.45729 -11.6698 xg(177) : 10.61307 -8.1933 xg(191) : 11.45729 -12.1979 xg(178) : 10.67337 -14.0929 xg(191) : 11.45729 -13.4758 xg(178) : 10.67337 -9.2078 xg(191) : 11.45729 -7.8374 xg(178) : 10.67337 -7.5860 xg(082) : 4.88442 -4.7280 xg(191) : 11.45729 -10.6201 xg(178) : 10.67337 -8.7697 xg(184) : 11.03518 -10.6016 xg(180) : 10.79397 -8.6251 xg(180) : 10.79397 -10.4072 xg(180) : 10.79397 -11.8694 xg(191) : 11.45729 -11.1132 xg(191) : 11.45729 -9.8715 xg(192) : 11.51759 -5.4788 xg(191) : 11.45729 -13.8155 xg(179) : 10.73367 -12.9546 xg(179) : 10.73367 -13.3983 xg(191) : 11.45729 -15.0251 xg(179) : 10.73367 -10.9663 xg(179) : 10.73367 -10.6532 xg(191) : 11.45729 -11.8202 xg(180) : 10.79397 -9.6976 xg(192) : 11.51759 -13.3892 xg(180) : 10.79397 -11.8560 xg(180) : 10.79397 -11.3605 xg(191) : 11.45729 -7.0262 xg(191) : 11.45729 -10.0071 xg(180) : 10.79397 -10.9940 xg(191) : 11.45729 -11.3490 xg(180) : 10.79397 -9.8005 xg(191) : 11.45729 -8.2649 xg(180) : 10.79397 -9.1499 xg(191) : 11.45729 -8.6594 xg(191) : 11.45729 -11.1724 xg(180) : 10.79397 -11.4637 xg(191) : 11.45729 -12.5662 xg(180) : 10.79397 -10.4064 xg(180) : 10.79397 -8.9671 xg(191) : 11.45729 -10.3566 xg(180) : 10.79397 -12.9065 xg(191) : 11.45729 -9.1292 xg(180) : 10.79397 -7.9841 xg(191) : 11.45729 -9.1525 xg(180) : 10.79397 -10.4241 xg(191) : 11.45729 -11.9345 xg(180) : 10.79397 -11.8815 xg(191) : 11.45729 -11.0719 xg(180) : 10.79397 -11.0812 xg(191) : 11.45729 -12.9320 xg(180) : 10.79397 -11.7546 xg(180) : 10.79397 -12.2312 xg(191) : 11.45729 -12.0725 xg(180) : 10.79397 -12.8460 xg(191) : 11.45729 -9.2358 xg(180) : 10.79397 -8.1268 xg(191) : 11.45729 -9.2060 xg(180) : 10.79397 -9.6469 xg(191) : 11.45729 -11.8762 xg(180) : 10.79397 -9.2371 xg(191) : 11.45729 -5.7559 xg(191) : 11.45729 -8.6792 xg(190) : 11.39698 -8.7791 xg(190) : 11.39698 -12.4946 xg(180) : 10.79397 -11.3175 xg(180) : 10.79397 -9.1385 xg(180) : 10.79397 -6.2246 xg(180) : 10.79397 -11.2827 xg(191) : 11.45729 -9.4592 xg(180) : 10.79397 -11.4546 xg(191) : 11.45729 -8.6594 xg(190) : 11.39698 -10.0841 xg(190) : 11.39698 -12.7137 xg(180) : 10.79397 -10.7248 xg(180) : 10.79397 -13.6134 xg(190) : 11.39698 -11.1226 xg(180) : 10.79397 -11.2488 xg(180) : 10.79397 -12.1914 xg(190) : 11.39698 -14.3418 Number of evaluations: 5 + 95 = 100. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe04.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe04.m ***** test stk_example_doe04; close all; #=========================# # stk_example_doe04 # #=========================# 'stk_example_doe04' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe04.m STK_EXAMPLE_DOE04 Probability of misclassification The upper panel shows posterior means and variances as usual, and the threshold of interest, which is at T = 0.85 (dashed line). The lower panel shows the probability of misclassification as a function of x (blue curve), i.e., the probability that the actual value of the function is not on the same side of the threshold as the prediction (posterior mean). We also plot the expected future probability of misclassification (magenta curve), should a new evaluation be made at x = 3. Note that both probabilities are obtained using stk_pmisclass. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe03.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe03.m ***** test stk_example_doe03; close all; #=========================# # stk_example_doe03 # #=========================# 'stk_example_doe03' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe03.m STK_EXAMPLE_DOE03 A simple illustration of 1D Bayesian optimization Our goal here is to optimize (maximize) the one-dimensional function x |--> x * sin (x) over the interval [0; 4 * pi]. A Matern 5/2 prior with known parameters is used. Evaluations points are chosen sequentially using the Expected Improvement (EI) criterion, starting from an initial design of N0 = 3 points. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. 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|-----------------------------------------------------------| | + + + F + | 0.02 |-+ * +-| 0.015 |-+ * +-| EI | ** | 0.01 |-+ ** +-| 0.005 |-+ ** +-| | + + + *** + | 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ | #### #%%%%%%## #&&***GF*G** ####### 5 |-+&&&&&&&&&&&% %&&&&&&&&&%%# &=***& #*G*&&&&&&&%%# 0 |-+*****G******G*****XXXXX&&&&%***&&# ****XXX&&&&%# z |&&&&&&# #%%%##&===**********G*&&% &=******X&&&% -5 |-+## %&&&&======&& %===XX******G -10 |-+ #%%&&&&&&%# #%====&&==== | + +###### + + +#%%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.006 |-----------------------------------------------------------| 0.005 |-+ + + + F + +-| | * | 0.004 |-+ * +-| EI 0.003 |-+ * +-| 0.002 |-+ * +-| | * | 0.001 |-+ + **** + * + +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ | #### #%%%%%%## #&&***GG*G** ####### 5 |-+&&&&&&&&&&&% %&&&&&&&&&%%# &=***& #*G*&&&&&&&%%# 0 |-+*****G******G*****XXXXX&&&&%***&& ****XXX&&&&%# z |&&&&&&# #%%%##&===**F*******G*&&# &=******X&&&% -5 |-+## %&&&&======&& %===XX******G -10 |-+ #%%&&&&&&%# #%====&&==== | + +###### + + +#%%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.0006 |-----------------------------------------------------------| 0.0005 |-+ + +*F + + + +-| | *** | 0.0004 |-+ * * +-| 0.0003 |-+ * * +-| 0.0002 |-+ * ** +-| | ** * | 0.0001 |-+ + *+ ** + *** + +** +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 10 |-+ | #### #&&F**GG*G** ####### 5 |-+&&&&&&&&&&&& # &****& #*G*&&&&&&&%%# 0 |-+*****G******G**&&% #%%%%%&***&& ****XXX&&&&%# z |&&&&&&% #### #&*****G&&&****G*&%# &=******X&&&% -5 |-+## #&&&&*****=&& %===XX******G -10 |-+ #%%%%# #%====&&==== | + + + + +#%%====# + -15 |------------------------------------------------------------ 0 2 4 6 8 10 12 x 0.00014 |-----------------------------------------------------------| 0.00012 |-+ + + + F + + +-| 0.0001 |-+ ** +-| 8e-05 |-+ ** +-| | * * | 6e-05 |-+ * * +-| 4e-05 |-+ * * *** +-| 2e-05 |-+ + + + * * * * ** +-| 0 |-----------------------------------------------------------| 0 2 4 6 8 10 12 : x z x0(001) : 0.00000 0.00000 x0(002) : 6.00000 -1.67649 x0(003) : 12.00000 -6.43888 xg(057) : 1.68421 1.67339 xg(099) : 2.94737 0.56886 xg(282) : 8.45113 6.98861 xg(299) : 8.96241 3.99788 xg(268) : 8.03008 7.90589 xg(258) : 7.72932 7.66935 xg(265) : 7.93985 7.91060 xg(266) : 7.96992 7.91642 xg(145) : 4.33083 -4.01937 Number of evaluations: 3 + 9 = 12. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe02.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe02.m ***** test stk_example_doe02; close all; #=========================# # stk_example_doe02 # #=========================# 'stk_example_doe02' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe02.m STK_EXAMPLE_DOE02 "Sequential Maximin" design In this example, a two-dimensional space-filling design is progressively enriched with new points using a "sequential maximin" approach. More precisely, the k-th point X(k, :) is selected to maximize the distance to the set of all previously selected points X(1, :), X(2, :), ..., X(k-1, :). NOTES: * The resulting design is NOT optimal with respect to the maximin criterion (separation distance). * This procedure is not truly a *sequential* design procedure, since the choice of the k-th point X(k, :) does NOT depend on the response at the previously selected locations X(i, :), i < k. REFERENCE [1] Emmanuel Vazquez and Julien Bect, "Sequential search based on kriging: convergence analysis of some algorithms", In: ISI - 58th World Statistics Congress of the International Statistical Institute (ISI'11), Dublin, Ireland, August 21-26, 2011. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. n = 10, fd = 3.42e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 11, fd = 3.05e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 12, fd = 2.75e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 13, fd = 2.66e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | | | F | | | 0.6 |-+ F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 14, fd = 2.65e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 15, fd = 2.50e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 16, fd = 2.47e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 17, fd = 2.20e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | F | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 18, fd = 2.17e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | F | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 n = 19, fd = 2.16e-01 1 |---------------------------------------------------------------------| | + + + + F | | F | 0.8 |-+ +-| | F | | F | | | 0.6 |-+ F F +-| | | | | 0.4 |-+ F +-| | | | F F | | | 0.2 |-+ +-| | F | | + + F+ + | 0 |---------------------------------------------------------------------| 0 0.2 0.4 0.6 0.8 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/02_design_of_experiments/stk_example_doe01.m] >>>>> /build/octave-stk-2.5.1/inst/examples/02_design_of_experiments/stk_example_doe01.m ***** test stk_example_doe01; close all; #=========================# # stk_example_doe01 # #=========================# 'stk_example_doe01' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/02_design_of_experiments/stk_example_doe01.m STK_EXAMPLE_DOE01 Examples of two-dimensional designs All designs are constructed on the hyper-rectangle BOX = [0; 2] x [0; 4]. Examples of the following designs are shown: a) Regular grid --> stk_sampling_regulargrid, b) "Maximin" latin hypercube sample --> stk_sampling_maximinlhs, c) RR2-scrambled Halton sequence --> stk_sampling_halton_rr2, d) Uniformly distributed random sample --> stk_sampling_randunif. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb09.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb09.m ***** test stk_example_kb09; close all; #========================# # stk_example_kb09 # #========================# 'stk_example_kb09' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb09.m STK_EXAMPLE_KB09 Generation of sample paths conditioned on noisy observations A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noisy observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique (stk_generate_samplepaths function). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb05 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb08.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb08.m ***** test stk_example_kb08; close all; #========================# # stk_example_kb08 # #========================# 'stk_example_kb08' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb08.m STK_EXAMPLE_KB08 Generation of conditioned sample paths made easy It has been demonstrated, in stk_example_kb05, how to generate conditioned sample paths using unconditioned sample paths and conditioning by kriging. This example shows how to do the same in a more concise way, letting STK take care of the details. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb07.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb07.m ***** test stk_example_kb07; close all; #========================# # stk_example_kb07 # #========================# 'stk_example_kb07' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb07.m STK_EXAMPLE_KB07 Simulation of sample paths from a Matern process Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb06.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb06.m ***** test stk_example_kb06; close all; #========================# # stk_example_kb06 # #========================# 'stk_example_kb06' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb06.m STK_EXAMPLE_KB06 Ordinary kriging VS kriging with a linear trend The same dataset is analyzed using two variants of kriging. The left panel shows the result of ordinary kriging, in other words, Gaussian process interpolation assuming a constant (but unknown) mean. The right panel shows the result of adding a linear trend in the mean of the Gaussian process. The difference with the left plot is clear in extrapolation: the first predic- tor exhibits a "mean reverting" behaviour, while the second one captures an increasing trend in the data. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb05.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb05.m ***** test stk_example_kb05; close all; #========================# # stk_example_kb05 # #========================# 'stk_example_kb05' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb05.m STK_EXAMPLE_KB05 Generation of conditioned sample paths A Matern Gaussian process model is used, with constant but unknown mean (ordinary kriging) and known covariance parameters. Given noiseless observations from the unknown function, a batch of conditioned sample paths is drawn using the "conditioning by kriging" technique. In short, this means that unconditioned sample path are simulated first (using stk_generate_samplepaths), and then conditioned on the observations by kriging (using stk_conditioning). Note: in this example, for pedagogical purposes, conditioned samplepaths are simulated in two steps: first, unconditioned samplepaths are simulated; second, conditioned samplepaths are obtained using conditioning by kriging. In practice, these two steps can be carried out all at once using stk_generate_samplepath (see, e.g., stk_example_kb09). See also: stk_generate_samplepaths, stk_conditioning, stk_example_kb09 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb03.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb03.m ***** test stk_example_kb03; close all; #========================# # stk_example_kb03 # #========================# 'stk_example_kb03' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb03.m STK_EXAMPLE_KB03 Ordinary kriging in 2D An anisotropic Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function (variance, regularity and ranges) are estimated using the Restricted Maximum Likelihood (ReML) method. The mean function of the GP prior is assumed to be constant and unknown. This default choice can be overridden by means of the model.lm property. The function is sampled on a space-filling Latin Hypercube design, and the data is assumed to be noiseless. Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. BOX = 2-dimensional hyper-rectangle (stk_hrect object): : x_1 x_2 lower_bounds : -5 0 upper_bounds : 10 15 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02n.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb02n.m ***** test stk_example_kb02n; close all; #=========================# # stk_example_kb02n # #=========================# 'stk_example_kb02n' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb02n.m STK_EXAMPLE_KB02N Noisy ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noisy dataset. The model and data are the same as in stk_example_kb02, but this time the parameters of the covariance function and the variance of the noise are jointly estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.098610 2.302585 0.613435 lognoisevariance = -3.0915 True noise variance = 0.0400 Estimated noise variance = 0.0454 True function and noisy observed data 1.5 |-+ | G****** +--------------------+ | **** G *G* |***?***True function| 1 |-+ G** *G +---G---Observations-+ | *** ** | ** ** 0.5 |-+ ** G* G *** | ** ** ****G***G* G | **G ** *** *** 0 |** ** ** *** | ** *G **G | **G ** ** -0.5 |-+ G ** ** | ** **G | **G ** -1 |-+ *** *G* | ***G** | + + + + -1.5 |------------------------------------------------------------------- -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb02.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb02.m ***** test stk_example_kb02; close all; #========================# # stk_example_kb02 # #========================# 'stk_example_kb02' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb02.m STK_EXAMPLE_KB02 Ordinary kriging in 1D with parameter estimation This example shows how to estimate covariance parameters and compute ordinary kriging predictions on a one-dimensional noiseless dataset. The model and data are the same as in stk_example_kb01, but this time the parameters of the covariance function are estimated using the Restricted Maximum Likelihood (ReML) method. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.21078 2.30259 0.75619 lognoisevariance = -Inf True function and observed data 1.5 |-+ | ***G** +--------------------+ | **** *** |***?***True function| 1 |-+ ** ** +---G---Observations-+ | *** ** | ** ** 0.5 |-+ ** ** *** | G* ** **** **G** | ** ** G** *** 0 |** ** ** *** | ** ** ** | ** ** ** -0.5 |-+ ** ** | ** ** | G* ** -1 |-+ *** *** | ****** | + + + + -1.5 |------------------------------------------------------------------- -1 -0.5 0 0.5 1 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01n.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb01n.m ***** test stk_example_kb01n; close all; #=========================# # stk_example_kb01n # #=========================# 'stk_example_kb01n' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb01n.m STK_EXAMPLE_KB01N Ordinary kriging in 1D, with noisy data This example shows how to compute ordinary kriging predictions on a one-dimensional noisy dataset. The Gaussian Process (GP) prior is the same as in stk_example_kb01. The observation noise is Gaussian and homoscedastic (constant variance). Its variance is assumed to be known. Note that the kriging predictor, which is the posterior mean of the GP, does NOT interpolate the data in this noisy example. See also: stk_example_kb01, stk_example_kb02n Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.69315 1.38629 0.91629 lognoisevariance = -3.2189 True function and observed data 1.5 |-+ | G****** +--------------------+ | *** G *G* |***?***True function| 1 |-+ G** *G +---G---Observations-+ | ** *** | ** *G G 0.5 |-+** ** ******G G | *G ** *** G **** 0 |** ** ** ** |* ** *G *** | ** ** *G -0.5 |-+ G *G ** * | ** *G | **G ** -1 |-+ ** G* | ***G** | + + + + -1.5 |----------------------------------------------------------- -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/examples/01_kriging_basics/stk_example_kb01.m] >>>>> /build/octave-stk-2.5.1/inst/examples/01_kriging_basics/stk_example_kb01.m ***** test stk_example_kb01; close all; #========================# # stk_example_kb01 # #========================# 'stk_example_kb01' is a script from the file /build/octave-stk-2.5.1/debian/octave-stk/usr/share/octave/packages/stk-2.5.1/examples/01_kriging_basics/stk_example_kb01.m STK_EXAMPLE_KB01 Ordinary kriging in 1D, with noiseless data This example shows how to compute ordinary kriging predictions on a one-dimensional noiseless dataset. The word 'ordinary' indicates that the mean function of the GP prior is assumed to be constant and unknown. A Matern covariance function is used for the Gaussian Process (GP) prior. The parameters of this covariance function are assumed to be known (i.e., no parameter estimation is performed here). Note that the kriging predictor, which is the posterior mean of the GP, interpolates the data in this noiseless example. See also: stk_example_kb01n, stk_example_kb02 Additional help for built-in functions and operators is available in the online version of the manual. Use the command 'doc ' to search the manual index. Help and information about Octave is also available on the WWW at https://www.octave.org and via the help@octave.org mailing list. model = scalar structure containing the fields: covariance_type = @stk_materncov_iso lm = dim = 1 param = -0.69315 1.38629 0.91629 lognoisevariance = -Inf True function and observed data 1.5 |-+ | ***G** +--------------------+ | *** *** |***?***True function| 1 |-+ ** ** +---G---Observations-+ | ** *** | ** ** 0.5 |-+** ** *****G | *G ** *** **** 0 |** ** G* ** |* ** ** *** | ** ** ** -0.5 |-+ ** ** * | ** ** | G* ** -1 |-+ ** ** | ****** | + + + + -1.5 |----------------------------------------------------------- -1 -0.5 0 0.5 1 input variable x 1 test, 1 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_sphcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_sphcov_iso (); ***** error stk_sphcov_iso (param); ***** error stk_sphcov_iso (param, x); ***** test stk_sphcov_iso (param, x, y); ***** test stk_sphcov_iso (param, x, y, -1); ***** test stk_sphcov_iso (param, x, y, -1, false); ***** error stk_sphcov_iso (param, x, y, -1, false, pi^2); ***** error stk_sphcov_iso (param, x, y, -2); ***** test stk_sphcov_iso (param, x, y, -1); ***** error stk_sphcov_iso (param, x, y, 0); ***** test stk_sphcov_iso (param, x, y, 1); ***** test stk_sphcov_iso (param, x, y, 2); ***** error stk_sphcov_iso (param, x, y, 3); ***** error stk_sphcov_iso (param, x, y, nan); ***** error stk_sphcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_sphcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_iso (param, x, y); K2 = stk_sphcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_sphcov_iso (param, x, y, i); dK2 = stk_sphcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_sphcov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_sphcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_sphcov_aniso (); ***** error K0 = stk_sphcov_aniso (param); ***** error K0 = stk_sphcov_aniso (param, x); ***** test K1 = stk_sphcov_aniso (param, x, y); ***** test K2 = stk_sphcov_aniso (param, x, y, -1); ***** test K3 = stk_sphcov_aniso (param, x, y, -1, false); ***** error K0 = stk_sphcov_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_sphcov_aniso (param, u, v, -1); K2 = stk_sphcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_sphcov_aniso (param, x, y, -2); ***** test stk_sphcov_aniso (param, x, y, -1); ***** error stk_sphcov_aniso (param, x, y, 0); ***** test stk_sphcov_aniso (param, x, y, 1); ***** test stk_sphcov_aniso (param, x, y, 2); ***** error stk_sphcov_aniso (param, x, y, 3); ***** error stk_sphcov_aniso (param, x, y, nan); ***** error stk_sphcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_sphcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_sphcov_aniso (param, x, y); K2 = stk_sphcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_sphcov_aniso (param, x, y, i); dK2 = stk_sphcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_noisecov.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_noisecov.m ***** shared ni, lognoisevariance, diff ni = 5; lognoisevariance = 0.0; diff = -1; ***** error K = stk_noisecov(); ***** error K = stk_noisecov(ni); ***** test K = stk_noisecov(ni, lognoisevariance); ***** test K = stk_noisecov(ni, lognoisevariance, diff); ***** test K = stk_noisecov(ni, lognoisevariance, diff, true); ***** error K = stk_noisecov(ni, lognoisevariance, diff, true, pi^2); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.9]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error stk_materncov_iso(); ***** error stk_materncov_iso(param); ***** error stk_materncov_iso(param, x); ***** test stk_materncov_iso(param, x, y); ***** test stk_materncov_iso(param, x, y, -1); ***** test stk_materncov_iso(param, x, y, -1, false); ***** error stk_materncov_iso(param, x, y, -1, false, pi^2); ***** error stk_materncov_iso(param, x, y, -2); ***** test stk_materncov_iso(param, x, y, -1); ***** error stk_materncov_iso(param, x, y, 0); ***** test stk_materncov_iso(param, x, y, 1); ***** test stk_materncov_iso(param, x, y, 2); ***** test stk_materncov_iso(param, x, y, 3); ***** error stk_materncov_iso(param, x, y, 4); ***** error stk_materncov_iso(param, x, y, nan); ***** error stk_materncov_iso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov_iso (param, x, y); K2 = stk_materncov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:3, dK = stk_materncov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_iso(param, x, y); K2 = stk_materncov_iso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:3, dK1 = stk_materncov_iso(param, x, y, i); dK2 = stk_materncov_iso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 19 tests, 19 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 1.5; 2.8]); x = stk_sampling_randunif(5, dim); y = stk_sampling_randunif(5, dim); ***** error stk_materncov_aniso(); ***** error stk_materncov_aniso(param); ***** error stk_materncov_aniso(param, x); ***** test stk_materncov_aniso(param, x, y); ***** test stk_materncov_aniso(param, x, y, -1); ***** test stk_materncov_aniso(param, x, y, -1, false); ***** error stk_materncov_aniso(param, x, y, -1, false, pi^2); ***** error stk_materncov_aniso(param, x, y, -2); ***** test stk_materncov_aniso(param, x, y, -1); ***** error stk_materncov_aniso(param, x, y, 0); ***** test stk_materncov_aniso(param, x, y, 1); ***** test stk_materncov_aniso(param, x, y, 2); ***** test stk_materncov_aniso(param, x, y, 3); ***** error stk_materncov_aniso(param, x, y, 4); ***** error stk_materncov_aniso(param, x, y, nan); ***** error stk_materncov_aniso(param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 1.5; 2.8; 2.7; 2.9]); nx = 4; ny = 10; x = stk_sampling_randunif(nx, dim); y = stk_sampling_randunif(ny, dim); ***** test K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1); assert(isequal(size(K1), [nx ny])); assert(stk_isequal_tolabs(K1, K2)); ***** test for i = 1:(dim+2), dK = stk_materncov_aniso(param, x, y, i); assert(isequal(size(dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif(n, dim); y = stk_sampling_randunif(n, dim); K1 = stk_materncov_aniso(param, x, y); K2 = stk_materncov_aniso(param, x, y, -1, true); assert(isequal(size(K1), [n n])); assert(stk_isequal_tolabs(K2, diag(K1))); for i = 1:(dim+2), dK1 = stk_materncov_aniso(param, x, y, i); dK2 = stk_materncov_aniso(param, x, y, i, true); assert(isequal(size(dK1), [n n])); assert(stk_isequal_tolabs(dK2, diag(dK1))); end 19 tests, 19 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov52_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov52_iso (); ***** error stk_materncov52_iso (param); ***** error stk_materncov52_iso (param, x); ***** test stk_materncov52_iso (param, x, y); ***** test stk_materncov52_iso (param, x, y, -1); ***** test stk_materncov52_iso (param, x, y, -1, false); ***** error stk_materncov52_iso (param, x, y, -1, false, pi^2); ***** error stk_materncov52_iso (param, x, y, -2); ***** test stk_materncov52_iso (param, x, y, -1); ***** error stk_materncov52_iso (param, x, y, 0); ***** test stk_materncov52_iso (param, x, y, 1); ***** test stk_materncov52_iso (param, x, y, 2); ***** error stk_materncov52_iso (param, x, y, 3); ***** error stk_materncov52_iso (param, x, y, nan); ***** error stk_materncov52_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov52_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_iso (param, x, y); K2 = stk_materncov52_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov52_iso (param, x, y, i); dK2 = stk_materncov52_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov52_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov52_aniso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov52_aniso (); ***** error stk_materncov52_aniso (param); ***** error stk_materncov52_aniso (param, x); ***** test stk_materncov52_aniso (param, x, y); ***** test stk_materncov52_aniso (param, x, y, -1); ***** test stk_materncov52_aniso (param, x, y, -1, false); ***** error stk_materncov52_aniso (param, x, y, -1, false, pi^2); ***** error stk_materncov52_aniso (param, x, y, -2); ***** test stk_materncov52_aniso (param, x, y, -1); ***** error stk_materncov52_aniso (param, x, y, 0); ***** test stk_materncov52_aniso (param, x, y, 1); ***** test stk_materncov52_aniso (param, x, y, 2); ***** error stk_materncov52_aniso (param, x, y, 3); ***** error stk_materncov52_aniso (param, x, y, nan); ***** error stk_materncov52_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov52_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov52_aniso (param, x, y); K2 = stk_materncov52_aniso(param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov52_aniso (param, x, y, i); dK2 = stk_materncov52_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov32_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_materncov32_iso (); ***** error stk_materncov32_iso (param); ***** error stk_materncov32_iso (param, x); ***** test stk_materncov32_iso (param, x, y); ***** test stk_materncov32_iso (param, x, y, -1); ***** test stk_materncov32_iso (param, x, y, -1, false); ***** error stk_materncov32_iso (param, x, y, -1, false, pi^2); ***** error stk_materncov32_iso (param, x, y, -2); ***** test stk_materncov32_iso (param, x, y, -1); ***** error stk_materncov32_iso (param, x, y, 0); ***** test stk_materncov32_iso (param, x, y, 1); ***** test stk_materncov32_iso (param, x, y, 2); ***** error stk_materncov32_iso (param, x, y, 3); ***** error stk_materncov32_iso (param, x, y, nan); ***** error stk_materncov32_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_materncov32_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_iso (param, x, y); K2 = stk_materncov32_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_materncov32_iso (param, x, y, i); dK2 = stk_materncov32_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_materncov32_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_materncov32_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_materncov32_aniso (); ***** error K0 = stk_materncov32_aniso (param); ***** error K0 = stk_materncov32_aniso (param, x); ***** test K1 = stk_materncov32_aniso (param, x, y); ***** test K2 = stk_materncov32_aniso (param, x, y, -1); ***** test K3 = stk_materncov32_aniso (param, x, y, -1, false); ***** error K0 = stk_materncov32_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_materncov32_aniso (param, u, v, -1); K2 = stk_materncov32_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); assert (isequal (K1, K2)); ***** error stk_materncov32_aniso (param, x, y, -2); ***** test stk_materncov32_aniso (param, x, y, -1); ***** error stk_materncov32_aniso (param, x, y, 0); ***** test stk_materncov32_aniso (param, x, y, 1); ***** test stk_materncov32_aniso (param, x, y, 2); ***** error stk_materncov32_aniso (param, x, y, 3); ***** error stk_materncov32_aniso (param, x, y, nan); ***** error stk_materncov32_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_materncov32_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_materncov32_aniso (param, x, y); K2 = stk_materncov32_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_materncov32_aniso (param, x, y, i); dK2 = stk_materncov32_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_gausscov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_gausscov_iso (); ***** error stk_gausscov_iso (param); ***** error stk_gausscov_iso (param, x); ***** test stk_gausscov_iso (param, x, y); ***** test stk_gausscov_iso (param, x, y, -1); ***** test stk_gausscov_iso (param, x, y, -1, false); ***** error stk_gausscov_iso (param, x, y, -1, false, pi^2); ***** error stk_gausscov_iso (param, x, y, -2); ***** test stk_gausscov_iso (param, x, y, -1); ***** error stk_gausscov_iso (param, x, y, 0); ***** test stk_gausscov_iso (param, x, y, 1); ***** test stk_gausscov_iso (param, x, y, 2); ***** error stk_gausscov_iso (param, x, y, 3); ***** error stk_gausscov_iso (param, x, y, nan); ***** error stk_gausscov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_gausscov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_iso (param, x, y); K2 = stk_gausscov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_gausscov_iso (param, x, y, i); dK2 = stk_gausscov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_gausscov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_gausscov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_gausscov_aniso (); ***** error K0 = stk_gausscov_aniso (param); ***** error K0 = stk_gausscov_aniso (param, x); ***** test K1 = stk_gausscov_aniso (param, x, y); ***** test K2 = stk_gausscov_aniso (param, x, y, -1); ***** test K3 = stk_gausscov_aniso (param, x, y, -1, false); ***** error K0 = stk_gausscov_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_gausscov_aniso (param, u, v, -1); K2 = stk_gausscov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_gausscov_aniso (param, x, y, -2); ***** test stk_gausscov_aniso (param, x, y, -1); ***** error stk_gausscov_aniso (param, x, y, 0); ***** test stk_gausscov_aniso (param, x, y, 1); ***** test stk_gausscov_aniso (param, x, y, 2); ***** error stk_gausscov_aniso (param, x, y, 3); ***** error stk_gausscov_aniso (param, x, y, nan); ***** error stk_gausscov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_gausscov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_gausscov_aniso (param, x, y); K2 = stk_gausscov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_gausscov_aniso (param, x, y, i); dK2 = stk_gausscov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_iso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_expcov_iso.m ***** shared param, x, y dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (5, dim); ***** error stk_expcov_iso (); ***** error stk_expcov_iso (param); ***** error stk_expcov_iso (param, x); ***** test stk_expcov_iso (param, x, y); ***** test stk_expcov_iso (param, x, y, -1); ***** test stk_expcov_iso (param, x, y, -1, false); ***** error stk_expcov_iso (param, x, y, -1, false, pi^2); ***** error stk_expcov_iso (param, x, y, -2); ***** test stk_expcov_iso (param, x, y, -1); ***** error stk_expcov_iso (param, x, y, 0); ***** test stk_expcov_iso (param, x, y, 1); ***** test stk_expcov_iso (param, x, y, 2); ***** error stk_expcov_iso (param, x, y, 3); ***** error stk_expcov_iso (param, x, y, nan); ***** error stk_expcov_iso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1); assert (isequal (size (K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:2, dK = stk_expcov_iso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_iso (param, x, y); K2 = stk_expcov_iso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:2, dK1 = stk_expcov_iso (param, x, y, i); dK2 = stk_expcov_iso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 18 tests, 18 passed, 0 known failure, 0 skipped [inst/covfcs/stk_expcov_aniso.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_expcov_aniso.m ***** shared param, x, y, K1, K2, K3 dim = 1; param = log ([1.0; 2.5]); x = stk_sampling_randunif (5, dim); y = stk_sampling_randunif (6, dim); ***** error K0 = stk_expcov_aniso (); ***** error K0 = stk_expcov_aniso (param); ***** error K0 = stk_expcov_aniso (param, x); ***** test K1 = stk_expcov_aniso (param, x, y); ***** test K2 = stk_expcov_aniso (param, x, y, -1); ***** test K3 = stk_expcov_aniso (param, x, y, -1, false); ***** error K0 = stk_expcov_aniso (param, x, y, -1, false, pi^2); ***** assert (isequal (K1, K2)); ***** assert (isequal (K1, K3)); ***** test % df versus ordinary array u = double (x); v = double (y); K1 = stk_expcov_aniso (param, u, v, -1); K2 = stk_expcov_aniso (param, stk_dataframe (u), stk_dataframe (v), -1); ***** error stk_expcov_aniso (param, x, y, -2); ***** test stk_expcov_aniso (param, x, y, -1); ***** error stk_expcov_aniso (param, x, y, 0); ***** test stk_expcov_aniso (param, x, y, 1); ***** test stk_expcov_aniso (param, x, y, 2); ***** error stk_expcov_aniso (param, x, y, 3); ***** error stk_expcov_aniso (param, x, y, nan); ***** error stk_expcov_aniso (param, x, y, inf); ***** shared dim, param, x, y, nx, ny dim = 3; param = log ([1.0; 2.5; 2.4; 2.6]); nx = 4; ny = 10; x = stk_sampling_randunif (nx, dim); y = stk_sampling_randunif (ny, dim); ***** test K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1); assert (isequal (size(K1), [nx ny])); assert (stk_isequal_tolabs (K1, K2)); ***** test for i = 1:(dim + 1), dK = stk_expcov_aniso (param, x, y, i); assert (isequal (size (dK), [nx ny])); end ***** test n = 7; x = stk_sampling_randunif (n, dim); y = stk_sampling_randunif (n, dim); K1 = stk_expcov_aniso (param, x, y); K2 = stk_expcov_aniso (param, x, y, -1, true); assert (isequal (size (K1), [n n])); assert (stk_isequal_tolabs (K2, diag (K1))); for i = 1:(dim + 1), dK1 = stk_expcov_aniso (param, x, y, i); dK2 = stk_expcov_aniso (param, x, y, i, true); assert (isequal (size (dK1), [n n])); assert (stk_isequal_tolabs (dK2, diag (dK1))); end 21 tests, 21 passed, 0 known failure, 0 skipped [inst/covfcs/stk_discretecov.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/stk_discretecov.m ***** shared model, model2, x0 n0 = 20; n1 = 10; dim = 4; x0 = stk_sampling_randunif (n0, dim); x1 = stk_sampling_randunif (n1, dim); model = stk_model ('stk_materncov52_aniso', dim); model.lm = stk_lm_affine (); model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); ***** test % without noise, pairwise = false model.lognoisevariance = - inf; model2 = stk_model ('stk_discretecov', model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); ***** test % without noise, pairwise = true K1 = stk_make_matcov (model, x0([2 5 6], :), [], true); K2 = stk_make_matcov (model2, [2 5 6]', [], true); assert (stk_isequal_tolrel (K1, K2)); ***** test % with noise, pairwise = false model.lognoisevariance = log (0.01); model2 = stk_model ('stk_discretecov', model, x0); idx = [1 4 9]; [K1, P1] = stk_make_matcov (model, x0(idx, :)); [K2, P2] = stk_make_matcov (model2, idx'); assert (stk_isequal_tolrel (K1, K2)); assert (stk_isequal_tolrel (P1, P2)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_spherical.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_spherical.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_spherical (); ***** test stk_rbf_spherical (h); ***** test stk_rbf_spherical (h, diff); ***** error stk_rbf_spherical (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_spherical (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_spherical (h + delta) - stk_rbf_spherical (h)) / delta; d2 = stk_rbf_spherical (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** assert (stk_rbf_spherical (inf) == 0) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern52.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_matern52.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern52 (); ***** test stk_rbf_matern52 (h); ***** test stk_rbf_matern52 (h, diff); ***** error stk_rbf_matern52 (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern52 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h); y = stk_rbf_matern52 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (5/2, h, 2); y = stk_rbf_matern52 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern52 (inf) == 0) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern32.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_matern32.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_matern32 (); ***** test stk_rbf_matern32 (h); ***** test stk_rbf_matern32 (h, diff); ***** error stk_rbf_matern32 (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_matern32 (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h); y = stk_rbf_matern32 (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (3/2, h, 2); y = stk_rbf_matern32 (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_matern32 (inf) == 0) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_matern.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_matern.m ***** shared nu, h, diff nu = 1.0; h = 1.0; diff = -1; ***** error stk_rbf_matern (); ***** error stk_rbf_matern (nu); ***** test stk_rbf_matern (nu, h); ***** test stk_rbf_matern (nu, h, diff); ***** error stk_rbf_matern (nu, h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 for nu = 0.1:0.2:5.0, x = stk_rbf_matern (nu, 0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); end 6 tests, 6 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_gauss.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_gauss.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_gauss (); ***** test stk_rbf_gauss (h); ***** test stk_rbf_gauss (h, diff); ***** error stk_rbf_gauss (h, diff, pi); ***** test % h = 0.0 => correlation = 1.0 x = stk_rbf_gauss (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/covfcs/rbf/stk_rbf_exponential.m] >>>>> /build/octave-stk-2.5.1/inst/covfcs/rbf/stk_rbf_exponential.m ***** shared h, diff h = 1.0; diff = -1; ***** error stk_rbf_exponential (); ***** test stk_rbf_exponential (h); ***** test stk_rbf_exponential (h, diff); ***** error stk_rbf_exponential (h, diff, pi); ***** test %% h = 0.0 => correlation = 1.0 x = stk_rbf_exponential (0.0); assert (stk_isequal_tolrel (x, 1.0, 1e-8)); ***** test %% check derivative numerically h = [-1 -0.5 -0.1 0.1 0.5 1]; delta = 1e-9; d1 = (stk_rbf_exponential (h + delta) - stk_rbf_exponential (h)) / delta; d2 = stk_rbf_exponential (h, 1); assert (stk_isequal_tolabs (d1, d2, 1e-4)); ***** test %% consistency with stk_rbf_matern: function values for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h); y = stk_rbf_exponential (h); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** test %% consistency with stk_rbf_matern: derivatives for h = 0.1:0.1:2.0, x = stk_rbf_matern (1/2, h, 2); y = stk_rbf_exponential (h, 1); assert (stk_isequal_tolrel (x, y, 1e-8)); end ***** assert (stk_rbf_exponential (inf) == 0) 9 tests, 9 passed, 0 known failure, 0 skipped [inst/core/stk_predict_leaveoneout.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_predict_leaveoneout.m ***** shared n, x_obs, z_obs, model n = 20; x_obs = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); model = stk_model ('stk_materncov32_iso'); model.param = log ([1; 5]); ***** test % one output loo_pred = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); ***** test % two outputs [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); ***** test % heteroscedastic noise case model.lognoisevariance = (1 + rand (n, 1)) * 1e-6; [loo_pred, loo_res] = stk_predict_leaveoneout (model, x_obs, z_obs); assert (isequal (size (loo_pred), [n 2])); assert (isequal (loo_pred.colnames, {'mean', 'var'})); assert (all (isfinite (loo_pred(:)))); assert (isequal (size (loo_res), [n 2])); assert (isequal (loo_res.colnames, {'residuals', 'norm_res'})); assert (all (isfinite (loo_res(:)))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/stk_predict.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_predict.m ***** shared n, m, model, x0, x_obs, z_obs, x_prd, y_prd1, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = stk_sampling_regulargrid(n+m, d, [0; pi]); idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (double (x_obs)); x_prd = x0(idx_prd); model = stk_model('stk_materncov32_iso'); model.param = log ([1.0; 2.1]); ***** error y_prd1 = stk_predict(); ***** error y_prd1 = stk_predict(model); ***** error y_prd1 = stk_predict(model, x_obs); ***** error y_prd1 = stk_predict(model, x_obs, z_obs); ***** test y_prd1 = stk_predict(model, x_obs, z_obs, x_prd); ***** error y_prd1 = stk_predict(model, x_obs, z_obs, x_prd, 0); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); ***** test % nargout = 2, compute only variances [y_prd1, lambda] = stk_predict (model, x_obs, [], x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd1.mean))); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (model, x_obs, z_obs, x_prd); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % predict on large set of locations x_prd = stk_sampling_regulargrid (1e5, 1, [0; pi]); y_prd = stk_predict (model, x_obs, z_obs, x_prd); ***** test % predict on an observation point % https://sourceforge.net/p/kriging/tickets/49/ [zp, lambda] = stk_predict (model, x_obs, z_obs, x_obs(4)); assert (isequal (z_obs(4), zp.mean)) assert (isequal (zp.var, 0)) lambda_ref = zeros (n, 1); lambda_ref(4) = 1; assert (isequal (lambda, lambda_ref)) 12 tests, 12 passed, 0 known failure, 0 skipped [inst/core/stk_ortho_func.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_ortho_func.m ***** shared model, x, n, d n = 15; d = 4; model = stk_model ('stk_materncov_aniso', d); x = stk_sampling_randunif (n, d); model = rmfield (model, 'lm'); % Test the old .order approach ***** error P = stk_ortho_func (); ***** error P = stk_ortho_func (model); ***** test P = stk_ortho_func (model, x); ***** error P = stk_ortho_func (model, x, pi); ***** test model.order = -1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 0])); ***** test model.order = 0; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1])); ***** test model.order = 1; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, d + 1])); ***** test model.order = 2; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (d + 3) / 2])); ***** test model.order = 3; P = stk_ortho_func (model, x); assert (isequal (size (P), [n, 1 + d * (11 + d * (6 + d)) / 6])); ***** error model.order = 4; P = stk_ortho_func (model, x); % model.order > 3 is not allowed 10 tests, 10 passed, 0 known failure, 0 skipped [inst/core/stk_model_update.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_model_update.m ***** test x1 = (linspace (0, 1, 15))'; z1 = sin (x1); x2 = (linspace (2, 3, 15))'; z2 = sin (x2); xt = (linspace (1, 2, 15))'; zt = sin (xt); % Prior model M0 = stk_model ('stk_materncov32_iso'); M0.param = log ([1.0; 2.1]); M1 = stk_model_update (M0, x1, z1); M1 = stk_model_update (M1, x2, z2); % this calls @stk_model_gpposterior/... zp1 = stk_predict (M1, xt); M2 = stk_model_gpposterior (M0, [x1; x2], [z1; z2]); zp2 = stk_predict (M2, xt); assert (stk_isequal_tolabs (double (zp2 - zp1), zeros (15, 2), 1e-10)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/stk_model.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_model.m ***** test model = stk_model(); ***** test model = stk_model('stk_expcov_iso'); ***** test model = stk_model('stk_expcov_iso', 1); ***** test model = stk_model('stk_expcov_iso', 3); ***** test model = stk_model('stk_expcov_aniso'); ***** test model = stk_model('stk_expcov_aniso', 1); ***** test model = stk_model('stk_expcov_aniso', 3); ***** test model = stk_model('stk_materncov_iso'); ***** test model = stk_model('stk_materncov_iso', 1); ***** test model = stk_model('stk_materncov_iso', 3); ***** test model = stk_model('stk_materncov_aniso'); ***** test model = stk_model('stk_materncov_aniso', 1); ***** test model = stk_model('stk_materncov_aniso', 3); ***** test model = stk_model('stk_materncov32_iso'); ***** test model = stk_model('stk_materncov32_iso', 1); ***** test model = stk_model('stk_materncov32_iso', 3); ***** test model = stk_model('stk_materncov32_aniso'); ***** test model = stk_model('stk_materncov32_aniso', 1); ***** test model = stk_model('stk_materncov32_aniso', 3); ***** test model = stk_model('stk_materncov52_iso'); ***** test model = stk_model('stk_materncov52_iso', 1); ***** test model = stk_model('stk_materncov52_iso', 3); ***** test model = stk_model('stk_materncov52_aniso'); ***** test model = stk_model('stk_materncov52_aniso', 1); ***** test model = stk_model('stk_materncov52_aniso', 3); ***** test model = stk_model('stk_gausscov_iso'); ***** test model = stk_model('stk_gausscov_iso', 1); ***** test model = stk_model('stk_gausscov_iso', 3); ***** test model = stk_model('stk_gausscov_aniso'); ***** test model = stk_model('stk_gausscov_aniso', 1); ***** test model = stk_model('stk_gausscov_aniso', 3); ***** test model = stk_model('stk_sphcov_iso'); ***** test model = stk_model('stk_sphcov_iso', 1); ***** test model = stk_model('stk_sphcov_iso', 3); ***** test model = stk_model('stk_sphcov_aniso'); ***** test model = stk_model('stk_sphcov_aniso', 1); ***** test model = stk_model('stk_sphcov_aniso', 3); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/core/stk_make_matcov.m] >>>>> /build/octave-stk-2.5.1/inst/core/stk_make_matcov.m ***** shared model, model2, x0, x1, n0, n1, d, Ka, Kb, Kc, Pa, Pb, Pc n0 = 20; n1 = 10; d = 4; model = stk_model ('stk_materncov52_aniso', d); model.lm = stk_lm_affine; model.param = log ([1.0; 2.1; 2.2; 2.3; 2.4]); model2 = model; model2.lognoisevariance = log(0.01); x0 = stk_sampling_randunif (n0, d); x1 = stk_sampling_randunif (n1, d); ***** error [KK, PP] = stk_make_matcov (); ***** error [KK, PP] = stk_make_matcov (model); ***** test [Ka, Pa] = stk_make_matcov (model, x0); % (1) ***** test [Kb, Pb] = stk_make_matcov (model, x0, x0); % (2) ***** test [Kc, Pc] = stk_make_matcov (model, x0, x1); % (3) ***** error [KK, PP] = stk_make_matcov (model, x0, x1, pi); ***** assert (isequal (size (Ka), [n0 n0])); ***** assert (isequal (size (Kb), [n0 n0])); ***** assert (isequal (size (Kc), [n0 n1])); ***** assert (isequal (size (Pa), [n0 d + 1])); ***** assert (isequal (size (Pb), [n0 d + 1])); ***** assert (isequal (size (Pc), [n0 d + 1])); ***** assert (isequal (Kb, Ka)); ***** test [Ka, Pa] = stk_make_matcov (model2, x0); % (1') ***** test [Kb, Pb] = stk_make_matcov (model2, x0, x0); % (2') ***** error assert (isequal (Kb, Ka)); ***** assert (isequal (Pa, Pb)); ***** assert (isequal (Pa, Pc)); 18 tests, 18 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/subsref.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/subsref.m ***** shared M_post, n n = 15; x_obs = (linspace (0, pi, n))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** assert (isstruct (M_post.prior_model)); ***** assert (isequal (size (M_post.input_data), [n 1])); ***** assert (isequal (size (M_post.output_data), [n 1])); ***** assert (isa (M_post.kreq, 'stk_kreq_qr')); ***** error M_post(1); ***** error M_post{1}; 6 tests, 6 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_predict_leaveoneout.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_predict_leaveoneout.m ***** test % Check virtual Leave-One-Out formula n = 20; d = 1; x_obs = stk_sampling_regulargrid (n, d, [0; 2*pi]); z_obs = stk_feval (@sin, x_obs); lm_list = {stk_lm_null, stk_lm_constant, stk_lm_affine}; for j = 0:2 for k = 1:(length (lm_list)) model = stk_model ('stk_materncov32_iso', d); model.lm = lm_list{k}; model.param = log ([1; 5]); switch j % test various scenarios for lognoisevariance case 0 model.lognoisevariance = -inf; case 1 model.lognoisevariance = 0; case 2 model.lognoisevariance = (1 + rand (n, 1)) * 1e-3; end M_post = stk_model_gpposterior (model, x_obs, z_obs); [loo_pred, loo_res] = stk_predict_leaveoneout (M_post); [direct_pred, direct_res] = stk_predict_leaveoneout_direct (M_post); assert (stk_isequal_tolrel (loo_pred, direct_pred)); assert (stk_isequal_tolrel (loo_res, direct_res)); end end 1 test, 1 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_predict.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_predict.m ***** shared n, m, M_post, M_prior, x0, x_obs, z_obs, x_prd, y_prd, idx_obs, idx_prd n = 10; % number of observations m = n + 1; % number of predictions d = 1; % dimension of the input space x0 = (linspace (0, pi, n + m))'; idx_obs = (2:2:(n+m-1))'; idx_prd = (1:2:(n+m))'; x_obs = x0(idx_obs); z_obs = sin (x_obs); x_prd = x0(idx_prd); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error y_prd = stk_predict (M_post); ***** test y_prd = stk_predict (M_post, x_prd); ***** error y_prd = stk_predict (M_post, [x_prd x_prd]); ***** error y_prd = stk_predict (M_post, x_prd, 0); ***** test % nargout = 2 [y_prd1, lambda] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); ***** test % nargout = 3 [y_prd1, lambda, mu] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging ***** test % nargout = 4 [y_prd1, lambda, mu, K] = stk_predict (M_post, x_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); assert (isequal (size (lambda), [n m])); assert (isequal (size (mu), [1 m])); % ordinary kriging assert (isequal (size (K), [m m])); ***** test % nargout = 2, compute only variances M_post1 = stk_model_gpposterior (M_prior, x_obs, []); [y_prd_nan, lambda] = stk_predict (M_post1, x_prd); assert (isequal (size (lambda), [n m])); assert (all (isnan (y_prd_nan.mean))); ***** test % discrete model (prediction indices provided) M_prior1 = stk_model ('stk_discretecov', M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, idx_prd); assert (stk_isequal_tolrel (y_prd, y_prd1)); ***** test % discrete model (prediction indices *not* provided) M_prior1 = stk_model ('stk_discretecov', M_prior, x0); M_post1 = stk_model_gpposterior (M_prior1, idx_obs, z_obs); y_prd1 = stk_predict (M_post1, []); % predict them all! assert (stk_isequal_tolrel (y_prd, y_prd1(idx_prd, :))); 10 tests, 10 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_model_update.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_model_update.m ***** shared x_obs, z_obs, ref, M_prior, x_new, z_new, lnv_new [x_obs, z_obs, ref] = stk_dataset_twobumps ('noisy2'); M_prior = stk_model ('stk_materncov52_iso'); M_prior.param = [-0.15; 0.38]; M_prior.lognoisevariance = 2 * log (ref.noise_std); x_new = [-0.79; -0.79]; z_new = [-0.69; -0.85]; lnv_new = ref.noise_std_func (x_new); ***** test % heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); ***** error % using lnv_new / homoscedastic M_prior.lognoisevariance = 0; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK ***** error % using lnv_new / noiseless M_prior.lognoisevariance = -inf; M_post = stk_model_gpposterior (M_prior, x_obs, z_obs) M_post = stk_model_update (M_post, x_new, z_new, lnv_new); % NOT OK M_post = | | prior_model: <1x1 struct array> | input_data: <80x1 stk_dataframe array> | output_data: <80x1 stk_dataframe array> | with .prior_model = scalar structure containing the fields: covariance_type = @stk_materncov52_iso lm = dim = 1 param = -0.15000 0.38000 lognoisevariance = -Inf ***** error % not using lnv_new / heteroscedastic M_prior.lognoisevariance = 2 * log (ref.noise_std); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); M_post = stk_model_update (M_post, x_new, z_new); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/stk_model_gpposterior.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/stk_model_gpposterior.m ***** test stk_test_class ('stk_model_gpposterior') ***** shared M_prior, x_obs, z_obs x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); ***** test M_post = stk_model_gpposterior (); ***** test M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs]); ***** error M_post = stk_model_gpposterior (M_prior, x_obs, [z_obs; z_obs], 3.441); ***** test % hidden feature kreq = stk_kreq_qr (M_prior, x_obs); M_post = stk_model_gpposterior (M_prior, {x_obs, kreq}, z_obs); ***** test % NaNs in prior_model.param DIM = 1; M = stk_model (@stk_materncov52_aniso, DIM); M.param = nan (2, 1); % this is currently the default x = stk_sampling_regulargrid (20, DIM, [0; 1]); y = sin (double (x)); zp = stk_predict (M, x, y, x); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/set.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/set.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/@stk_model_gpposterior/get.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_model_gpposterior/get.m ***** shared M_post x_obs = (linspace (0, pi, 15))'; z_obs = sin (x_obs); M_prior = stk_model ('stk_materncov32_iso'); M_prior.param = log ([1.0; 2.1]); M_post = stk_model_gpposterior (M_prior, x_obs, z_obs); ***** error value = get (M_post, 1.33); ***** error value = get (M_post, 'dudule'); ***** test value = get (M_post, 'prior_model'); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/core/@stk_kreq_qr/stk_update.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_kreq_qr/stk_update.m ***** shared model, x, y model = stk_model ('stk_materncov32_iso', 1); model.param = log ([1.0; 2.8]); x = [1.2; 0.3; -1.9]; y = 0.0; ***** test kreqA = stk_kreq_qr (model, x); [Kii, Pi] = stk_make_matcov (model, x); kreqB = stk_kreq_qr (model, x(1)); kreqB = stk_update (kreqB, Kii(2, 2), Kii(2, 1), Pi(2)); kreqB = stk_update (kreqB, Kii(3, 3), Kii(3, [1 2]), Pi(3)); assert (stk_isequal_tolabs (kreqA, kreqB, 3 * eps)) ***** test kreqA = stk_kreq_qr (model, x, y); [Kii, Pi] = stk_make_matcov (model, x); [Kti, Pt] = stk_make_matcov (model, y, x); kreqB = stk_kreq_qr (model, x(1), y); kreqB = stk_update (kreqB, Kii(2, 2), Kii(2, 1), Pi(2), Kti(2)); kreqB = stk_update (kreqB, Kii(3, 3), Kii(3, [1 2]), Pi(3), Kti(3)); assert (stk_isequal_tolabs (kreqA, kreqB, 3 * eps)) 2 tests, 2 passed, 0 known failure, 0 skipped [inst/core/@stk_kreq_qr/stk_kreq_qr.m] >>>>> /build/octave-stk-2.5.1/inst/core/@stk_kreq_qr/stk_kreq_qr.m ***** test stk_test_class ('stk_kreq_qr') 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = [2; 3]; x = box(1) + diff (box) * rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** error y4 = stk_normalize (x, box, log (2)); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_length.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_length.m ***** assert (isequal (stk_length ([1 2; 3 4; 5 6]), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_feval.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_feval.m ***** shared f, xt f = @(x)(- (0.7 * x + sin (5 * x + 1) + 0.1 * sin (10 * x))); xt = stk_sampling_regulargrid (20, 1, [0; 1]); ***** error yt = stk_feval (); ***** error yt = stk_feval (f); ***** test yt = stk_feval (f, xt); ***** test yt = stk_feval (f, xt, false); ***** test yt = stk_feval (f, xt, false, false); ***** test yt = stk_feval (f, xt, false, false, false); ***** error yt = stk_feval (f, xt, false, false, false, pi^2); ***** test N = 15; xt = stk_sampling_regulargrid (N, 1, [0; 1]); yt = stk_feval (f, xt); assert (isequal (size (yt), [N 1])); ***** test x = stk_dataframe ([1; 2; 3], {'x'}, {'a'; 'b'; 'c'}); y = stk_feval (@(u)(2 * u), x); assert (isequal (y.data, [2; 4; 6])); assert (isequal (y.rownames, {'a'; 'b'; 'c'})); ***** shared t, z_ref, n n = 20; t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); z_ref = [sin(t.data) cos(t.data)]; ***** test t.colnames = {'time'}; z = stk_feval ({@sin, @cos}, t); assert (isa (z, 'stk_dataframe')); assert (isequal (z.data, z_ref)); ***** test F = @(x)([sin(x) cos(x)]); z = stk_feval (F, t); assert (isequal (z.data, z_ref)); ***** test t = stk_sampling_regulargrid (n, 1, [0; 2*pi]); F = {'sin', 'cos'}; z = stk_feval (F, t); assert (isequal (z.data, [sin(t.data) cos(t.data)])); assert (isequal (z.colnames, {'sin' 'cos'})); ***** test % vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t.^2 + (cos ((t - 1).*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); ***** test % not vectorized F = @(t)([sin(t) cos(t)]); G = @(t)(0.365 * t^2 + (cos ((t - 1)*(t - 2) + 0.579033))); z = stk_feval ({@sin, @cos, G, F, 'tan'}, t, [], [], false); assert (isequal (z.colnames, {'sin' 'cos' 'F3' 'F4_1' 'F4_2' 'tan'})); 14 tests, 14 passed, 0 known failure, 0 skipped [inst/arrays/generic/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/generic/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = [0 3 2; 1 4 1; 7 0 2]; ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y.data, [0 0 1; 7 4 2])); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/vertcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/vertcat.m ***** shared d, x, y d = 10; x = stk_hrect (d); y = double (x); ***** test z = vertcat (x, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (x, y); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); ***** test z = vertcat (y, x); assert (isequal (size (z), [4 d])); assert (strcmp (class (z), 'stk_dataframe')); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/subsref.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/subsref.m ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(:, [1 3 4]); assert (strcmp (class (B), 'stk_hrect')); assert (isequal (double (B), [0 0 0; 1 3 4])); ***** test B = stk_hrect ([0 0 0 0; 1 2 3 4]); B = B(1, :); assert (strcmp (class (B), 'stk_dataframe')); assert (isequal (double (B), [0 0 0 0])); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_rescale.m ***** shared x x = rand (10, 4); y = stk_rescale (x, [], []); assert (stk_isequal_tolabs (x, y)); ***** test y = stk_rescale(0.5, [], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 1], [0; 2]); assert (stk_isequal_tolabs (y, 1.0)); ***** test y = stk_rescale (0.5, [0; 2], []); assert (stk_isequal_tolabs (y, 0.25)); ***** test y = stk_rescale (0.5, [0; 2], [0; 1]); assert (stk_isequal_tolabs (y, 0.25)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_normalize.m ***** shared x, box, y1, y2, y3, y4 n = 5; box = stk_hrect ([2; 3]); x = 2 + rand (n, 1); ***** error y1 = stk_normalize (); ***** test y2 = stk_normalize (x); ***** test y3 = stk_normalize (x, box); ***** error y4 = stk_normalize (x, box, log (2)); ***** test assert (~ any ((y2 < -10 * eps) | (y2 > 1 + 10 * eps))); ***** test assert (~ any ((y3 < -10 * eps) | (y3 > 1 + 10 * eps))); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_hrect.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_hrect.m ***** test stk_test_class ('stk_hrect') ***** shared dom ***** test dom = stk_hrect ([-1; 1], {'x'}); ***** assert (isequal (dom.colnames, {'x'})) ***** assert (isequal (dom.rownames, {'lower_bounds'; 'upper_bounds'})) ***** assert (isequal (dom.data, [-1; 1])) 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_dataframe.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'lower_bounds'; 'upper_bounds'}; x = stk_hrect ([0 0; 1 1], cn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/stk_boundingbox.m ***** shared x, y lb = rand (1, 5); ub = lb + 1; cn = {'a', 'b', 'c', 'd', 'e'}; x = stk_hrect ([lb; ub], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y, x)); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/ismember.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/ismember.m ***** shared n, box n = 5; box = stk_hrect (n); ***** assert (ismember (box(1, :), box)) ***** assert (ismember (box(2, :), box)) ***** assert (ismember (.5 * ones (1, 5), box)) ***** assert (~ ismember (box(1, :) - 1, box)) ***** assert (~ ismember (box(2, :) + 1, box)) ***** test y = double (box); y = [y; y + 2]; assert (isequal (ismember (y, box), [1; 1; 0; 0])) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_hrect/horzcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_hrect/horzcat.m ***** shared d, x1, x2, x3 d = 10; x1 = stk_hrect (d); x2 = double (x1); x3 = [1:d; 0:(d-1)]; % illegal bounds ***** test y1 = horzcat (x1, x1); assert (isequal (size (y1), [2 2*d])); assert (strcmp (class (y1), 'stk_hrect')); ***** test y2 = horzcat (x1, x2); assert (isequal (size (y2), [2 2*d])); assert (strcmp (class (y2), 'stk_hrect')); ***** test y3 = horzcat (x2, x1); assert (isequal (size (y3), [2 2*d])); assert (strcmp (class (y3), 'stk_hrect')); ***** test lastwarn ('') y4 = horzcat (x1, x3); assert (isequal (size (y4), [2 2*d])); assert (strcmp (class (y4), 'stk_dataframe')); [warn_msg, warn_id] = lastwarn (); assert (strcmp (warn_id, 'STK:stk_hrect:horzcat:IllegalBounds')) warning: Illegal bounds, the result is not an stk_hrect object. 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/uminus.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/uminus.m ***** test x = stk_factorialdesign ({1:3, 1:2}); y = stk_factorialdesign ({-(1:3), -(1:2)}); assert (isequal (-x, y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_rescale.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 3], [0 3]}); z = stk_rescale (x, [1 5; 2 6], [0 0; 3 3]); assert (stk_isequal_tolabs (y, z)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_normalize.m ***** test x = stk_factorialdesign ({[1 2], [5 6]}); y = stk_factorialdesign ({[0 1], [0 1]}); assert (stk_isequal_tolabs (stk_normalize (x), y)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_factorialdesign.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_factorialdesign.m ***** test stk_test_class ('stk_factorialdesign') ***** test % constructor with two factors + column names x = stk_factorialdesign ({[0 1], [1 2 3]}, {'a', 'b'}); assert (isequal(x.colnames, {'a', 'b'})); assert (isequal(get (x, 'colnames'), {'a', 'b'})); ***** error stk_factorialdesign ('bouh'); ***** error stk_factorialdesign ({{'a' 'b'}}); ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_sampling_regulargrid (3^2, 2); ***** test format rat; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format long; disp (x); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test format short; disp (x); format (fmt); : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** test disp (stk_sampling_regulargrid (0^1, 1)); Empty data frame with 0 rows and 0 columns ***** test disp (stk_sampling_regulargrid (0^2, 2)); Empty data frame with 0 rows and 0 columns ***** test display (x); x = <9x2 stk_factorialdesign array> : --- --- * : 0.0 0.0 * : 0.5 0.0 * : 1.0 0.0 * : 0.0 0.5 * : 0.5 0.5 * : 1.0 0.5 * : 0.0 1.0 * : 0.5 1.0 * : 1.0 1.0 ***** error length (stk_sampling_regulargrid (7^2, 2)) % not defined ***** shared x x = stk_factorialdesign ({[0 1], [0 1]}); ***** assert (isequal (x(2:end, :), x(2:4, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:4, 2))) ***** error x(1:end, 1:end, 1:end) ***** shared x, y x = stk_sampling_regulargrid (3^2, 2); y = x; ***** test %%%% vercat z = vertcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% same thing, using cat(1, ...) z = cat (1, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x); double(y)])); ***** test %%%% horzcat y.colnames = {'y1' 'y2'}; z = horzcat (x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** test %%%% same thing, using cat (2, ...) z = cat (2, x, y); assert (strcmp (class (z), 'stk_dataframe')); assert (isequal (double (z), [double(x) double(y)])); ***** error cat (3, x, y) ***** shared x, t x = stk_sampling_regulargrid (3^2, 2); t = double (x); ***** assert (isequal (apply (x, 1, @sum), sum (t, 1))) ***** assert (isequal (apply (x, 2, @sum), sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** assert (isequal (apply (x, 1, @min, []), min (t, [], 1))) ***** assert (isequal (apply (x, 2, @min, []), min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** assert (isequal (min (x), min (t))) ***** assert (isequal (max (x), max (t))) ***** assert (isequal (std (x), std (t))) ***** assert (isequal (var (x), var (t))) ***** assert (isequal (sum (x), sum (t))) ***** assert (isequal (mean (x), mean (t))) ***** assert (isequal (mode (x), mode (t))) ***** assert (isequal (prod (x), prod (t))) ***** assert (isequal (median (x), median (t))) ***** shared x1, x2, x3, u1, u2, u3 x1 = stk_sampling_regulargrid ([4 3], 2); u1 = double (x1); x2 = stk_sampling_regulargrid ([3 4], 2); u2 = double (x2); x3 = x1 + 1; u3 = u1 + 1; ***** test z = bsxfun (@plus, x1, u2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, u1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = bsxfun (@plus, x1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), u1 + u2)) ***** test z = min (x1, x2); assert (isequal (double (z), min (u1, u2))); ***** test z = max (x1, x2); assert (isequal (double (z), max (u1, u2))); ***** error z = min (x1, x2, 1); ***** error z = max (x1, x2, 1); ***** test z = x1 + x2; assert (isequal (double (z), u1 + u2)); ***** test z = x1 - x2; assert (isequal (double (z), u1 - u2)); ***** test z = x1 .* x2; assert (isequal (double (z), u1 .* u2)); ***** test z = x3 .\ x2; assert (isequal (double (z), u3 .\ u2)); ***** test z = x2 ./ x3; assert (isequal (double (z), u2 ./ u3)); ***** test z = x3 .^ x2; assert (isequal (double (z), u3 .^ u2)); ***** test z = realpow (x3, x2); assert (isequal (double (z), realpow (u3, u2))); ***** test z = (x1 == x2); assert (isequal (double (z), (u1 == u2))); ***** test z = (x1 ~= x2); assert (isequal (double (z), (u1 ~= u2))); ***** test z = (x1 <= x2); assert (isequal (double (z), (u1 <= u2))); ***** test z = (x1 >= x2); assert (isequal (double (z), (u1 >= u2))); ***** test z = (x1 < x2); assert (isequal (double (z), (u1 < u2))); ***** test z = (x1 > x2); assert (isequal (double (z), (u1 > u2))); ***** test z = x1 & x2; assert (isequal (double (z), u1 & u2)); ***** test z = x1 | x2; assert (isequal (double (z), u1 | u2)); ***** test z = xor (x1, x2); assert (isequal (double (z), xor (u1, u2))); ***** shared x x = stk_factorialdesign ({[0 1], [0 1 2]}); ***** assert (strcmp (class (x'), 'stk_dataframe')) ***** assert (strcmp (class (x.'), 'stk_dataframe')) 60 tests, 60 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_dataframe.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_dataframe.m ***** shared x, cn, rn, y, cn2, rn2 cn = {'x' 'y'}; rn = {'a'; 'b'; 'c'; 'd'}; x = stk_factorialdesign ({1:2, 1:2}, cn, rn); cn2 = {'xx' 'yy'}; rn2 = {'aa'; 'bb'; 'cc'; 'dd'}; ***** test y = stk_dataframe (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn)) ***** test y = stk_dataframe (x, cn2, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn2)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, [], rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, cn)) ***** assert (isequal (y.rownames, rn2)) ***** test y = stk_dataframe (x, {}, rn2); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.colnames, {})) ***** assert (isequal (y.rownames, rn2)) 20 tests, 20 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_factorialdesign ({[1 2], [3 4 5], [0 2 8]}, cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y, stk_hrect ([1 3 0; 2 5 8], cn))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ndgrid.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/ndgrid.m ***** shared data data = stk_factorialdesign ({[0 1], [5 6 7]}); ***** test % nargout = 0 ndgrid (data); assert (isequal (ans, [0 0 0; 1 1 1])); ***** test % nargout = 1 x = ndgrid (data); assert (isequal (x, [0 0 0; 1 1 1])); ***** test % nargout = 2 [x, y] = ndgrid (data); assert (isequal ({x, y}, {[0 0 0; 1 1 1], [5 6 7; 5 6 7]})); ***** error % nargout = 3 [x, y, z] = ndgrid (data); ***** test data = stk_factorialdesign ({[], []}); [x, y] = ndgrid (data); assert (isequal ({x, y}, {[], []})); ***** test data = stk_factorialdesign ({[1:3]}); x = ndgrid (data); assert (isequal (x, [1; 2; 3])); 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/ismember.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/ismember.m ***** shared A, B, BB, b i_max = 10; n = 100; d = 5; A = randi (i_max, n, d); levels = repmat ({1:i_max}, 1, d); levels{4} = 1:2:i_max; B = stk_factorialdesign (levels); BB = double (B); ***** test b = ismember (A, B); ***** assert (isequal (b, ismember (A, BB))); ***** test b = ismember (A, B, 'rows'); ***** assert (isequal (b, ismember (A, BB, 'rows'))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_factorialdesign/fieldnames.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_factorialdesign/fieldnames.m ***** test x = stk_factorialdesign ({0:1, 3:5}, {'u' 'v'}); fn1 = sort (fieldnames (x)); fn2 = {'colnames', 'data', 'info', 'levels', ... 'rownames', 'stk_dataframe', 'u', 'v'}; assert (isequal (fn1, fn2)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/vertcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/vertcat.m ***** shared u, v u = rand (3, 2); v = rand (3, 2); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names this time x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {}, {'d'; 'e'; 'f'}); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); assert (all (strcmp (z.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'}))); ***** test % the same, with row names only for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); y = stk_dataframe (v); z = vertcat (x, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % incompatible variable names u = rand (3, 1); x = stk_dataframe (u, {'x'}); v = rand (3, 1); y = stk_dataframe (v, {'y'}); z = vertcat (x, y); assert (isequal (z.colnames, {})); warning: Incompatible column names ! The output of vertcat will have no column names. ***** test x = stk_dataframe (u); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test % the same, with row names for the first argument x = stk_dataframe (u, {}, {'a'; 'b'; 'c'}); z = vertcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v])); ***** test y = stk_dataframe (v); z = vertcat (u, y); assert (isa (z, 'stk_dataframe') && (isequal (double (z), [u; v]))); ***** test x = stk_dataframe (u); y = stk_dataframe (v); z = vertcat (x, y, u, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u; v; u; v])); ***** shared x, y x = stk_dataframe (rand (2, 3), {'a', 'b', 'c'}); y = stk_dataframe (rand (3, 2), {'a', 'b'}); y = horzcat (y, rand(3, 1)); % last column name is missing ***** test z = vertcat (x, y); assert (isequal (z.colnames, {'a' 'b' 'c'})) ***** test z = vertcat (y, x); assert (isequal (z.colnames, {'a' 'b' 'c'})) 10 tests, 10 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/var.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/var.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (var(df1), var(x1))) ***** assert (isequal (var(df1, 0, 1), var(x1))) ***** assert (isequal (var(df1, 0, 2), var(x1, 0, 2))) ***** assert (isequal (var(df1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 1), var(x1, 1))) ***** assert (isequal (var(df1, 1, 2), var(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/transpose.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/transpose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data.'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u.')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/times.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/times.m ***** test stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@times, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@times, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tanh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/tanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tanh (x); assert (strcmp (class (v), class (u)) && isequal (v, tanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tand.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/tand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tand (x); assert (strcmp (class (v), class (u)) && isequal (v, tand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/tan.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/tan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = tan (x); assert (strcmp (class (v), class (u)) && isequal (v, tan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sum.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sum.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (sum(df1), sum(x1))) ***** assert (isequal (sum(df1, 1), sum(x1))) ***** assert (isequal (sum(df1, 2), sum(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsref.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/subsref.m ***** shared x, s, t, data x = stk_dataframe(rand(3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x = set(x, 'rownames', s); assert (isequal (x.rownames, s)) assert (isequal (x.rownames{2}, 'b')) ***** test x = set(x, 'colnames', t); assert (isequal (x.rownames, s)) assert (isequal (x.colnames, t)) assert (isequal (x.colnames{2}, 'yy')) ***** shared u, data u = rand(3, 2); data = stk_dataframe(u, {'x1', 'x2'}); ***** assert (isequal (data.x2, u(:, 2))) ***** assert (data.x2(3) == u(3, 2)) ***** error t = data.toto; ***** error t = data(1, 1).zzz; % illegal multilevel indexing ***** error t = data(1, 1, 1); % too many indices ***** error t = data{1}; % curly braces not allowed ***** test % select rows and columns x = stk_dataframe (reshape (1:15, 5, 3), {'u' 'v' 'w'}); assert (isequal (x([3 5], 2), stk_dataframe ([8; 10], {'v'}))); ***** shared u, data u = rand(3, 1); data = stk_dataframe(u, {'x'}); ***** assert (isequal (data.x, u)) ***** assert (isequal (double (data), u)) ***** assert (isequal (double (data(2)), u(2))) ***** assert (isequal (double (data(3, 1)), u(3))) ***** error t = data(1, 1, 1); % too many indices ***** test x = stk_dataframe (randn (2, 2), {'u' 'v'}); y = x ([], :); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [0 2])); assert (isequal (y.colnames, {'u' 'v'})); ***** test x = stk_dataframe (randn (2, 2), [], {'a' 'b'}); y = x (:, []); assert (isa (y, 'stk_dataframe')); assert (isequal (size (y), [2 0])); assert (isequal (y.rownames, {'a'; 'b'})); 16 tests, 16 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/subsasgn.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/subsasgn.m ***** shared x, s, t, data x = stk_dataframe (rand (3, 2)); s = {'a'; 'b'; 'c'}; t = {'xx' 'yy'}; ***** test x.rownames = s; assert (isequal (get (x, 'rownames'), s)) ***** test x.colnames = t; assert (isequal (get (x, 'rownames'), s)) assert (isequal (get (x, 'colnames'), t)) ***** test x.rownames{2} = 'dudule'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), t)) ***** test x.colnames{1} = 'martha'; assert (isequal (get (x, 'rownames'), {'a'; 'dudule'; 'c'})) assert (isequal (get (x, 'colnames'), {'martha' 'yy'})) ***** test data = stk_dataframe (zeros(3, 2), {'x1' 'x2'}); u = rand(3, 1); data.x2 = u; assert (isequal (double (data), [zeros(3, 1) u])) ***** test data = stk_dataframe (zeros (3, 2), {'x1' 'x2'}); data.x2(3) = 27; assert (isequal (double (data), [0 0; 0 0; 0 27])) ***** error data.toto = rand (3, 1); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test x(:, 2) = []; assert (isequal (size (x), [4 2])) assert (isequal (double (x), [1 9; 2 10; 3 11; 4 12])) assert (isequal (get (x, 'colnames'), {'u' 'w'})) assert (isempty (get (x, 'rownames'))) ***** test x(2, :) = []; assert (isequal (size (x), [3 2])) assert (isequal (double (x), [1 9; 3 11; 4 12])) assert (isempty (get (x, 'rownames'))) ***** test x.rownames = {'a'; 'b'; 'c'}; x(2, :) = []; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 9; 4 12])) assert (isequal (x.rownames, {'a'; 'c'})) ***** test % change one value with matrix-style indexing x(1, 2) = 11; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 11; 4 12])) ***** test % change one value with linear indexing x(3) = 13; assert (isequal (size (x), [2 2])) assert (isequal (double (x), [1 13; 4 12])) ***** assert (isequal (double (x(:, :)), [1 13; 4 12])); ***** test % assignment to a variable that doesn't exist A = stk_dataframe (7.1); clear B; B(2) = A; assert (strcmp (class (B), 'stk_dataframe')) assert (isequal (B.data, [0 7.1])); ***** test % repmat x = stk_dataframe (1); y = repmat (x, 2, 3); assert (isa (y, 'stk_dataframe')); assert (isequal (y.data, ones (2, 3))); ***** test x(:, :) = []; assert (isempty (x)); ***** test % Delete the only row of a one-row dataframe y1 = stk_dataframe ([1.2 3.33], {'mean', 'var'}); y1(1, :) = []; % Remove the only row of data assert (isequal (size (y1), [0 2])) assert (isequal (y1.colnames, {'mean', 'var'})) y11 = get (y1, 'mean'); assert (isempty (y11)); ***** error x{1} = 2; ***** error x(1, 2) = []; ***** error x(1, 2).a = 3; ***** shared x x = stk_dataframe((1:5)'); ***** test x(2) = 0; assert (isequal (double (x), [1; 0; 3; 4; 5])); ***** test x(3) = []; assert (isequal (double (x), [1; 0; 4; 5])); ***** test x(3, 1) = 0; assert (isequal(double(x), [1; 0; 0; 5])); ***** error x(3, 1, 1) = 297; ***** test % create a new row and a new column through subsasgn() x = stk_dataframe (rand (5, 2)); x(6, 3) = 7; assert(isequal(size(x), [6, 3])); ***** test x = stk_dataframe ([]); x.colnames{2} = 'v'; x.rownames{2} = 'b'; assert (isequal (x.rownames, {''; 'b'})); assert (isequal (x.colnames, {'' 'v'})); assert (isequal (size (x.data), [2 2]) && (all (isnan (x.data(:))))) ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), {'u' 'v' 'w'}); ***** test % change one column using ':', plain numeric argument y = [0; 9; 0; 9]; z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2).data, y)); ***** test % change one column using ':', skt_dataframe argument y = stk_dataframe ([0; 9; 0; 9], {'y'}); z = x; z(:, 2) = y; assert (isequal (z(:, 1), x(:, 1))); assert (isequal (z(:, 2), y)); ***** shared x x = stk_dataframe (reshape (1:12, 4, 3), [], {'a'; 'b'; 'c'; 'd'}); ***** test % change one row using ':', plain numeric argument y = [7 7 7]; z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :).data, y)); ***** test % change one row using ':', skt_dataframe argument y = stk_dataframe ([7 7 7], [], {'y'}); z = x; z(3, :) = y; assert (isequal (z(1, :), x(1, :))); assert (isequal (z(3, :), y)); ***** shared x x = stk_dataframe (zeros (2), {'u' 'v'}); ***** test % first column x(1:2) = 1; y = stk_dataframe ([1 0; 1 0], {'u' 'v'}); assert (isequal (x, y)); ***** test % one more element x(1:3) = 2; y = stk_dataframe ([2 2; 2 0], {'u' 'v'}); assert (isequal (x, y)); ***** error % too many elements x(1:5) = 3; ***** shared x x = stk_dataframe (randn (3, 3)); ***** test x.colnames{2} = 'y'; ***** assert (isequal (x.colnames, {'' 'y' ''})); ***** test x.rownames{2} = 'b'; ***** assert (isequal (x.rownames, {''; 'b'; ''})); 37 tests, 37 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_sprintf.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_sprintf.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.024410 0.971229 * : 0.530883 0.650871 * : 0.754325 0.038316 ***** test format long; disp (x); : ---------------- ---------------- * : 0.02440991819288 0.97122915576423 * : 0.53088347546703 0.65087061159804 * : 0.75432459920958 0.03831630008745 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.024410 0.971229 * : 0.530883 0.650871 * : 0.754325 0.038316 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_rescale.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_rescale.m ***** test u = rand(5, 1) * 2; x = stk_dataframe(u); y = stk_rescale(x, [0; 2], [0; 3]); assert (isa (y, 'stk_dataframe') && isequal(double(y), u * 3/2)) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_normalize.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_normalize.m ***** test u = rand (6, 2) * 2; x = stk_dataframe (u); y = stk_normalize (x); assert (isa (y, 'stk_dataframe') ... && stk_isequal_tolabs (double (y), stk_normalize (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_length.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_length.m ***** test x = stk_dataframe ([1 2; 3 4; 5 6]); assert (isequal (stk_length (x), 3)); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_dataframe.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_dataframe.m ***** test stk_test_class ('stk_dataframe') ***** error x = stk_dataframe (1, {}, {}, pi); ***** test % default constructor x = stk_dataframe (); assert (isa (x, 'stk_dataframe') && isequal (size (x), [0 0])) ***** test y = stk_dataframe (rand (3, 2)); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test y = stk_dataframe (rand (3, 2), {'x', 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [3 2])) ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, pi); ***** error x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) ***** test x = stk_dataframe (rand (3, 2)); y = stk_dataframe (x, {'x' 'y'}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, [], {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_dataframe (rand (3, 2), {'x' 'y'}); y = stk_dataframe (x, {}, {'a', 'b', 'c'}); assert (isa (y, 'stk_dataframe') && isequal (size(y), [3 2])) assert (isequal (y.colnames, {})) assert (isequal (y.rownames, {'a'; 'b'; 'c'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}); y = stk_dataframe (x, [], {'a' 'b' 'c' 'd' 'e' 'f'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x, {'x' 'y'}, []); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** test x = stk_factorialdesign ({1:3, 1:2}, {'x' 'y'}, {'a' 'b' 'c' 'd' 'e' 'f'}); y = stk_dataframe (x); assert (isa (y, 'stk_dataframe') && isequal (size (y), [6 2])) assert (isequal (y.colnames, {'x' 'y'})) assert (isequal (y.rownames, {'a'; 'b'; 'c'; 'd'; 'e'; 'f'})) ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, pi); ***** error x = stk_factorialdesign ({1:3, 1:2}); y = stk_dataframe (x, {}, pi); ***** test x = stk_dataframe ([], {'a', 'b'}); assert (isequal (size (x), [0 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {})); ***** test x = stk_dataframe ([], {'a', 'b'}, {'toto'}); assert (isequal (size (x), [1 2])) assert (isequal (x.colnames, {'a' 'b'})); assert (isequal (x.rownames, {'toto'})); ***** test x = stk_dataframe (randn (10, 1), 'NOx'); assert (isequal (x.colnames, {'NOx'})); ***** test x = stk_dataframe (randn (1, 2), {}, 'aaa'); assert (isequal (x.rownames, {'aaa'})); 23 tests, 23 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/stk_boundingbox.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/stk_boundingbox.m ***** shared x, y, cn cn = {'a', 'b', 'c'}; x = stk_dataframe ([0 3 2; 1 4 1; 7 0 2], cn); ***** error y = stk_boundingbox (); ***** test y = stk_boundingbox (x); ***** error y = stk_boundingbox (x, 1); ***** assert (isequal (y, stk_hrect ([0 0 1; 7 4 2], cn))); 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/std.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/std.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (std(df1), std(x1))) ***** assert (isequal (std(df1, 0, 1), std(x1))) ***** assert (isequal (std(df1, 0, 2), std(x1, 0, 2))) ***** assert (isequal (std(df1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 1), std(x1, 1))) ***** assert (isequal (std(df1, 1, 2), std(x1, 1, 2))) 6 tests, 6 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sqrt.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sqrt.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sqrt (x); assert (strcmp (class (v), class (u)) && isequal (v, sqrt (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sort.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sort.m ***** shared x, y x = stk_dataframe ([3; 2; 1], {}, {'a', 'b', 'c'}); y = sort (x); ***** assert (strcmp (class (y), 'stk_dataframe')) ***** assert (isequal (y.data, [1; 2; 3])) ***** assert (isequal (y.rownames, {'c'; 'b'; 'a'})) ***** assert (isequal (sort (x, []), y)) ***** assert (isequal (sort (x, 1), y)) ***** assert (isequal (sort (x, 2), x)) ***** error sort (x, 3) ***** assert (isequal (sort (x, [], 'ascend'), y)) ***** assert (isequal (sort (x, 1, 'ascend'), y)) ***** assert (isequal (sort (x, 2, 'ascend'), x)) ***** error sort (x, 3, 'ascend') ***** assert (isequal (sort (x, [], 'descend'), x)) ***** assert (isequal (sort (x, 1, 'descend'), x)) ***** assert (isequal (sort (x, 2, 'descend'), x)) ***** error sort (x, 3, 'descend') 15 tests, 15 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/size.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/size.m ***** shared x x = stk_dataframe([1 2; 3 4; 5 6]); ***** assert (isequal (size(x), [3 2])) ***** assert (numel(x) == 1) ***** assert (ndims(x) == 2) ***** test size(x); % force exploration of branch nargout == 0 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sinh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sinh (x); assert (strcmp (class (v), class (u)) && isequal (v, sinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sind.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sind (x); assert (strcmp (class (v), class (u)) && isequal (v, sind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/sin.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/sin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = sin (x); assert (strcmp (class (v), class (u)) && isequal (v, sin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/reshape.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/reshape.m ***** test x = stk_dataframe (randn (10, 3)); y = reshape (x, 5, 6); assert (isa (y, 'stk_dataframe') && isequal (size (y), [5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/realpow.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/realpow.m ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@realpow, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@realpow, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/rdivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/rdivide.m ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@rdivide, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@rdivide, rand(7, 2), 1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/quantile.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/quantile.m ***** shared x1, df1, p x1 = rand (9, 3); df1 = stk_dataframe (x1, {'a', 'b', 'c'}); p = 0.95; ***** assert (isequal (quantile (df1, p), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 1), quantile (x1, p))) ***** assert (isequal (quantile (df1, p, 2), quantile (x1, p, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/prod.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/prod.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (prod(df1), prod(x1))) ***** assert (isequal (prod(df1, 1), prod(x1))) ***** assert (isequal (prod(df1, 2), prod(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/power.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/power.m ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 2)); ***** test stk_test_dfbinaryop(@power, rand(7, 2), .1); ***** error stk_test_dfbinaryop(@power, rand(7, 2), .1 + rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plus.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/plus.m ***** test stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@plus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@plus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/plot.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/plot.m ***** test % plot with x as a vector and z as a (univariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe(sin(x)); figure; plot(x, z); close(gcf); ***** test % plot with x as a vector and z as a (multivariate) dataframe x = linspace(0, 2*pi, 30)'; z = stk_dataframe([sin(x) cos(x)], {'sin' 'cos'}); figure; plot(x, z); close(gcf); ***** test % plot with x as a dataframe and z as a vector x = stk_dataframe(linspace(0, 2*pi, 30)'); z = sin(double(x)); figure; plot(x, z); close(gcf); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mtimes.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mtimes.m ***** shared x, y, z, w u = [1 3 4; 2 7 6]; % 2 x 3 v = [6 2; 1 7; 9 4]; % 3 x 2 w = [45 39; 73 77]; % u * v x = stk_dataframe (u, {}, {'a'; 'b'}); y = stk_dataframe (v, {'c' 'd'}); z = x * y; ***** assert (isa (z, 'stk_dataframe')); ***** assert (isequal (z.data, w)); ***** assert (isequal (z.rownames, x.rownames)); ***** assert (isequal (z.colnames, y.colnames)); ***** shared x, y x = stk_dataframe (rand (3, 2), {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 * x; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** test y = x * 3; ***** assert (isequal (y, stk_dataframe (3 * x.data, {'x' 'y'}, {'a'; 'b'; 'c'}))); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mrdivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mrdivide.m ***** test x1_data = [8 7; 58 49]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'x' 'y'}, {'u'; 'v'}); y = x1 / x2; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'u'; 'v'}, {'a'; 'b'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = x / 3; ***** assert (isequal (y, stk_dataframe ([1 1; 2 1; 3 4], {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = 3 / x; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mode.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mode.m ***** shared x1, df1 x1 = floor(3 * rand(9, 3)); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mode(df1), mode(x1))) ***** assert (isequal (mode(df1, 1), mode(x1))) ***** assert (isequal (mode(df1, 2), mode(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mldivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mldivide.m ***** test x1_data = [57 7; 2 0]; x1 = stk_dataframe (x1_data, {'x' 'y'}, {'a'; 'b'}); x2_data = [8 7; 2 0]; x2 = stk_dataframe (x2_data, {'w' 'z'}, {'a'; 'b'}); y = x2 \ x1; assert (stk_isequal_tolabs (y, ... stk_dataframe ([1 0; 7 1], {'x'; 'y'}, {'w'; 'z'}))); ***** shared x_data, x, y_data, y x_data = [3 3; 6 3; 9 12]; y_data = [1 1; 2 1; 3 4]; x = stk_dataframe (x_data, {'x' 'y'}, {'a'; 'b'; 'c'}); ***** test y = 3 \ x; ***** assert (isequal (y, stk_dataframe (y_data, {'x' 'y'}, {'a'; 'b'; 'c'}))); ***** error y = x \ 3; 4 tests, 4 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/minus.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/minus.m ***** test stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@minus, rand(7, 2), pi); ***** error stk_test_dfbinaryop(@minus, rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/min.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/min.m ***** test stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('min', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('min', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (min(df1), min(x1))) ***** assert (isequal (min(df1, [], 1), min(x1))) ***** assert (isequal (min(df1, [], 2), min(x1, [], 2))) ***** error (min(df1, df1, 2)) ***** test x = stk_dataframe ([5; 2; 4]); [M, k] = min (x); assert ((M == 2) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/median.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/median.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (median(df1), median(x1))) ***** assert (isequal (median(df1, 1), median(x1))) ***** assert (isequal (median(df1, 2), median(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/mean.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/mean.m ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (mean(df1), mean(x1))) ***** assert (isequal (mean(df1, 1), mean(x1))) ***** assert (isequal (mean(df1, 2), mean(x1, 2))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/max.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/max.m ***** test stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop ('max', rand(7, 2), pi); ***** error stk_test_dfbinaryop ('max', rand(7, 2), rand(7, 3)); ***** shared x1, df1 x1 = rand(9, 3); df1 = stk_dataframe(x1, {'a', 'b', 'c'}); ***** assert (isequal (max(df1), max(x1))) ***** assert (isequal (max(df1, [], 1), max(x1))) ***** assert (isequal (max(df1, [], 2), max(x1, [], 2))) ***** error (max(df1, df1, 2)) ***** test x = stk_dataframe ([1; 3; 2]); [M, k] = max (x); assert ((M == 3) && (k == 2)); 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/logical.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/logical.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = logical (x); assert (strcmp (class(v), 'logical') && isequal (v, logical (u))) ***** test u = (rand (4, 3) < 0.5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, u)) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe (u); v = logical (x); assert (strcmp (class (v), 'logical') && isequal (v, logical (u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log2.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log2.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log2 (x); assert (strcmp (class (v), class (u)) && isequal (v, log2 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log1p.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log1p.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log1p (x); assert (strcmp (class (v), class (u)) && isequal (v, log1p (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log10.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log10.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log10 (x); assert (strcmp (class (v), class (u)) && isequal (v, log10 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/log.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/log.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = log (x); assert (strcmp (class (v), class (u)) && isequal (v, log (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/length.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/length.m ***** error length (stk_dataframe ([1 2; 3 4; 5 6])) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ldivide.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/ldivide.m ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 2)); ***** test stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), pi); ***** error stk_test_dfbinaryop(@ldivide, 1 + rand(7, 2), rand(7, 3)); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isnan.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/isnan.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isnan (x); assert (islogical (v) && isequal (v, isnan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ismember.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/ismember.m ***** shared u, x, u1, x1, u2, x2 u = rand (10, 4); x = stk_dataframe (u); x1 = x(1, :); u1 = double (x1); u2 = - ones (1, 4); x2 = stk_dataframe (u2); ***** assert (ismember (u1, x, 'rows')) ***** assert (ismember (x1, u, 'rows')) ***** assert (ismember (x1, x, 'rows')) ***** assert (~ ismember (u2, x, 'rows')) ***** assert (~ ismember (x2, u, 'rows')) ***** assert (~ ismember (x2, x, 'rows')) ***** test [b, idx] = ismember ([x2; x1; x1], x, 'rows'); assert (isequal (b, [false; true; true])); assert (isequal (idx, [0; 1; 1])) 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isinf.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/isinf.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isinf (x); assert (islogical (v) && isequal (v, isinf (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/isfinite.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/isfinite.m ***** test u = [pi, NaN, Inf, -Inf]; x = stk_dataframe (u); v = isfinite (x); assert (islogical (v) && isequal (v, isfinite (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/horzcat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/horzcat.m ***** shared u, v u = rand(3, 2); v = rand(3, 2); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}, {'a'; 'b'; 'c'}); z = horzcat (x, y); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'x1' 'x2' 'y1' 'y2'}))); assert(all(strcmp(z.rownames, {'a'; 'b'; 'c'}))); ***** test % incompatible row names x = stk_dataframe (u, {'x1' 'x2'}, {'a'; 'b'; 'c'}); y = stk_dataframe (v, {'y1' 'y2'}, {'a'; 'b'; 'd'}); z = horzcat (x, y); assert (isequal (z.rownames, {})); warning: Incompatible row names ! The output of horzcat will have no row names. ***** test x = stk_dataframe (u); z = horzcat (x, v); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test y = stk_dataframe (v); z = horzcat (u, y); assert (isa (z, 'stk_dataframe') && isequal (double (z), [u v])); ***** test x = stk_dataframe(u, {'x1' 'x2'}); y = stk_dataframe(v, {'y1' 'y2'}); z = horzcat (x, y, u, v); assert(isa(z, 'stk_dataframe') && isequal(double(z), [u v u v])); 7 tests, 7 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/fieldnames.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/fieldnames.m ***** test x = stk_dataframe (rand (3, 2), {'u' 'v'}); s1 = sort (fieldnames (x)); s2 = {'colnames' 'data' 'info' 'rownames' 'u' 'v'}; assert (all (strcmp (s1, s2))); ***** test x = stk_dataframe (rand (3, 2)); x.rownames(2:3) = {'aa', 'bb'}; x.colnames{2} = 'toto'; assert (isequal (fieldnames (x), ... {'toto' 'aa' 'bb' 'data' 'info' 'rownames' 'colnames'})); 2 tests, 2 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/expm1.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/expm1.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = expm1 (x); assert (strcmp (class (v), class (u)) && isequal (v, expm1 (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/exp.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/exp.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = exp (x); assert (strcmp (class (v), class (u)) && isequal (v, exp (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/end.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/end.m ***** shared x x = stk_dataframe ([1; 2; 3]); ***** assert (isequal (double (x(2:end, :)), [2; 3])) ***** assert (isequal (double (x(2:end)), [2; 3])) ***** assert (isequal (double (x(2, 1:end)), 2)) ***** assert (isequal (double (x(end)), 3)) ***** shared x x = stk_dataframe ([1 2; 3 4; 5 6]); ***** assert (isequal (x(2:end, :), x(2:3, :))) ***** assert (isequal (x(2, 1:end), x(2, :))) ***** assert (isequal (x(2:end, 2:end), x(2:3, 2))) ***** error x(1:end, 1:end, 1:end) 8 tests, 8 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/double.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/double.m ***** test u = rand(4, 3); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, u)) ***** test u = (rand(4, 3) < 0.5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) ***** test u = uint8 (rand (4, 3) * 5); x = stk_dataframe(u); v = double(x); assert (strcmp(class(v), 'double') && isequal(v, double(u))) 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/display.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/display.m ***** test display (stk_dataframe (rand (3, 2))); = <3x2 stk_dataframe array> : -------- -------- * : 0.974336 0.405472 * : 0.424022 0.326531 * : 0.752155 0.052698 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/disp.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/disp.m ***** shared x, fmt fmt = stk_disp_getformat (); x = stk_dataframe (rand (3, 2)); ***** test format rat; disp (x); : -------- -------- * : 0.493040 0.442790 * : 0.555270 0.108990 * : 0.907157 0.780472 ***** test format long; disp (x); : ---------------- ---------------- * : 0.49303962659803 0.44278991850578 * : 0.55526973549539 0.10899012756613 * : 0.90715670096105 0.78047232443059 ***** test format short; disp (x); format (fmt); : -------- -------- * : 0.493040 0.442790 * : 0.555270 0.108990 * : 0.907157 0.780472 ***** test disp (stk_dataframe (zeros (0, 1))) Empty data frame with 0 rows and 0 columns ***** test disp (stk_dataframe (zeros (0, 2))) Empty data frame with 0 rows and 0 columns 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/ctranspose.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/ctranspose.m ***** test u = rand(3, 2) + 1i * rand(3, 2); data = stk_dataframe(u, {'x' 'y'}, {'obs1'; 'obs2'; 'obs3'}); data = data'; assert (isa(data, 'stk_dataframe') && isequal(double(data), u')); assert (isequal(data.rownames, {'x'; 'y'})); assert (isequal(data.colnames, {'obs1' 'obs2' 'obs3'})); 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosh (x); assert (strcmp (class (v), class (u)) && isequal (v, cosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cosd.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cosd (x); assert (strcmp (class (v), class (u)) && isequal (v, cosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cos.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = cos (x); assert (strcmp (class (v), class (u)) && isequal (v, cos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/cat.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/cat.m ***** shared u, v, x, y u = rand(3, 2); v = rand(3, 2); x = stk_dataframe(u); y = stk_dataframe(v); ***** test % vertical z = cat(1, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u; v])); ***** error z = cat(3, x, y); ***** test % horizontal y = stk_dataframe(v, {'y1' 'y2'}); z = cat(2, x, y); assert(isa(z, 'stk_dataframe')); assert(isequal(double(z), [u v])); assert(all(strcmp(z.colnames, {'' '' 'y1' 'y2'}))); 3 tests, 3 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/bsxfun.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/bsxfun.m ***** shared x1, x2, data1, data2 x1 = rand (3, 2); data1 = stk_dataframe (x1); x2 = rand (3, 2); data2 = stk_dataframe (x2); ***** test z = bsxfun (@plus, data1, x2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, x1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** test z = bsxfun (@plus, data1, data2); assert (isa (z, 'stk_dataframe') && isequal (double (z), x1 + x2)) ***** shared x, y x = stk_dataframe (randn (2), {'x1', 'x2'}, {'a'; 'b'}); y = stk_dataframe (randn (2), {'y1', 'y2'}, {'c'; 'd'}); ***** test z = x + y; assert (isequal (z.colnames, x.colnames)); assert (isequal (z.rownames, x.rownames)); ***** test z = y + x; assert (isequal (z.colnames, y.colnames)); assert (isequal (z.rownames, y.rownames)); 5 tests, 5 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atanh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/atanh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atanh (x); assert (strcmp (class (v), class (u)) && isequal (v, atanh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atand.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/atand.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atand (x); assert (strcmp (class (v), class (u)) && isequal (v, atand (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/atan.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/atan.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = atan (x); assert (strcmp (class (v), class (u)) && isequal (v, atan (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asinh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/asinh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asinh (x); assert (strcmp (class (v), class (u)) && isequal (v, asinh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asind.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/asind.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asind (x); assert (strcmp (class (v), class (u)) && isequal (v, asind (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/asin.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/asin.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = asin (x); assert (strcmp (class (v), class (u)) && isequal (v, asin (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/apply.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/apply.m ***** shared x, t, u t = rand (3, 2); x = stk_dataframe (t); ***** test u = apply (x, 1, @sum); ***** assert (isequal (u, sum (t, 1))) ***** test u = apply (x, 2, @sum); ***** assert (isequal (u, sum (t, 2))) ***** error u = apply (x, 3, @sum); ***** test u = apply (x, 1, @min, []); ***** assert (isequal (u, min (t, [], 1))) ***** test u = apply (x, 2, @min, []); ***** assert (isequal (u, min (t, [], 2))) ***** error u = apply (x, 3, @min, []); ***** test t = [1; 3; 2]; x = stk_dataframe (t); [M, k] = apply (x, 1, @max, []); assert ((M == 3) && (k == 2)); 11 tests, 11 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosh.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/acosh.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosh (x); assert (strcmp (class (v), class (u)) && isequal (v, acosh (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acosd.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/acosd.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acosd (x); assert (strcmp (class (v), class (u)) && isequal (v, acosd (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/acos.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/acos.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = acos (x); assert (strcmp (class (v), class (u)) && isequal (v, acos (u))) 1 test, 1 passed, 0 known failure, 0 skipped [inst/arrays/@stk_dataframe/abs.m] >>>>> /build/octave-stk-2.5.1/inst/arrays/@stk_dataframe/abs.m ***** test u = rand (4, 3); x = stk_dataframe (u); v = abs (x); assert (strcmp (class (v), class (u)) && isequal (v, abs (u))) 1 test, 1 passed, 0 known failure, 0 skipped Checking C++ files ... Summary: 1564 tests, 1564 passed, 0 known failures, 0 skipped dh_octave_substvar -O--buildsystem=octave dh_installdocs -O--buildsystem=octave dh_installchangelogs -O--buildsystem=octave dh_octave_changelogs -O--buildsystem=octave dh_octave_examples -O--buildsystem=octave dh_installinit -O--buildsystem=octave dh_installsystemduser -O--buildsystem=octave dh_perl -O--buildsystem=octave dh_link -O--buildsystem=octave dh_strip_nondeterminism -O--buildsystem=octave dh_compress -O--buildsystem=octave dh_fixperms -O--buildsystem=octave dh_missing -O--buildsystem=octave dh_dwz -O--buildsystem=octave dh_strip -O--buildsystem=octave dh_makeshlibs -O--buildsystem=octave dh_shlibdeps -O--buildsystem=octave dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex were not linked against libgomp.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex were not linked against liboctave.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex were not linked against libgcc_s.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_filldist_discr_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_sobol_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_sampling_vdc_rr2__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_isdominated_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_mindist_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__get_column_number__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_matrixy__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_distrib_bivnorm0_cdf__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_gpquadform_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_pairwise__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_paretofind_mex__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dist_matrixx__.mex debian/octave-stk/usr/lib/aarch64-linux-gnu/octave/packages/stk-2.5.1/aarch64-unknown-linux-gnu-api-v52/__stk_dominatedhv_mex__.mex were not linked against libstdc++.so.6 (they use none of the library's symbols) dh_installdeb -O--buildsystem=octave dh_gencontrol -O--buildsystem=octave dpkg-gencontrol: warning: package octave-stk: substitution variable ${octave:Upstream-Description} unused, but is defined dh_md5sums -O--buildsystem=octave dh_builddeb -O--buildsystem=octave dpkg-deb: building package 'octave-stk' in '../octave-stk_2.5.1-2_arm64.deb'. dpkg-deb: building package 'octave-stk-dbgsym' in '../octave-stk-dbgsym_2.5.1-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../octave-stk_2.5.1-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6144 and its subdirectories I: Current time: Sun Sep 5 19:00:54 -12 2021 I: pbuilder-time-stamp: 1630911654 Tue Aug 4 00:37:57 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled16-arm64.debian.net. Tue Aug 4 00:37:57 UTC 2020 I: Preparing to do remote build '2' on codethink-sled16-arm64.debian.net. Tue Aug 4 00:50:49 UTC 2020 I: Deleting $TMPDIR on codethink-sled16-arm64.debian.net. Tue Aug 4 00:50:51 UTC 2020 I: octave-stk_2.5.1-2_arm64.changes: Format: 1.8 Date: Wed, 02 Jan 2019 22:57:53 -0200 Source: octave-stk Binary: octave-stk octave-stk-dbgsym Architecture: arm64 Version: 2.5.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Octave Group Changed-By: Rafael Laboissiere Description: octave-stk - (not so) Small Toolbox for Kriging Changes: octave-stk (2.5.1-2) unstable; urgency=medium . * Team upload . * d/control: + Add Rules-Requires-Root: no + Bump Standards-Version to 4.3.0 + Bump to debhelper compat level 12 * Build-depend on debhelper-compat instead of using d/compat Checksums-Sha1: 238583fd4b5bd2b0d2525a45de818dafc8a0a43a 77880 octave-stk-dbgsym_2.5.1-2_arm64.deb beefd0dfee8686106421662a8658544a009fb593 14873 octave-stk_2.5.1-2_arm64.buildinfo fd348def1e34066056b04f71e0e7dbc55ac79818 286900 octave-stk_2.5.1-2_arm64.deb Checksums-Sha256: fcdba2ea42eba3ce21f57b0bcefe0d7cc763bf94ecc947fe64e40f225acfb2a6 77880 octave-stk-dbgsym_2.5.1-2_arm64.deb 1d82cde5ffef2a554d79317531962a9892d5d985760da11471bcc149cc3b5279 14873 octave-stk_2.5.1-2_arm64.buildinfo d6a29c613bbb513cfd084dc5330ab1db9e0f4296d93e623621edbedca7908730 286900 octave-stk_2.5.1-2_arm64.deb Files: 1deb0b8c450a2542d256e386dc51dc06 77880 debug optional octave-stk-dbgsym_2.5.1-2_arm64.deb 34bee3418efc4c2edfbdae8e08ea4dfa 14873 math optional octave-stk_2.5.1-2_arm64.buildinfo 628015ed2a7d8d24d3bb8aff406df4eb 286900 math optional octave-stk_2.5.1-2_arm64.deb Tue Aug 4 00:50:52 UTC 2020 I: diffoscope 154 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.5I8CIioFL3/octave-stk_2.5.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.5I8CIioFL3/octave-stk_2.5.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.5I8CIioFL3/octave-stk_2.5.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.5I8CIioFL3/b1/octave-stk_2.5.1-2_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.5I8CIioFL3/b2/octave-stk_2.5.1-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.255s) 0.255s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 4 00:50:56 UTC 2020 I: diffoscope 154 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 4 00:50:56 UTC 2020 I: octave-stk from buster built successfully and reproducibly on arm64. Tue Aug 4 00:50:58 UTC 2020 I: Submitting .buildinfo files to external archives: Tue Aug 4 00:50:58 UTC 2020 I: Submitting 16K b1/octave-stk_2.5.1-2_arm64.buildinfo.asc Tue Aug 4 00:50:58 UTC 2020 I: Submitting 16K b2/octave-stk_2.5.1-2_arm64.buildinfo.asc Tue Aug 4 00:50:59 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 4 00:50:59 UTC 2020 I: Done submitting .buildinfo files. Tue Aug 4 00:50:59 UTC 2020 I: Removing signed octave-stk_2.5.1-2_arm64.buildinfo.asc files: removed './b1/octave-stk_2.5.1-2_arm64.buildinfo.asc' removed './b2/octave-stk_2.5.1-2_arm64.buildinfo.asc'