Sat Aug 8 06:21:54 UTC 2020 I: starting to build meep-mpi-default/buster/arm64 on jenkins on '2020-08-08 06:21' Sat Aug 8 06:21:54 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_23/7032/console.log Sat Aug 8 06:21:54 UTC 2020 I: Downloading source for buster/meep-mpi-default=1.7.0-3 --2020-08-08 06:21:54-- http://deb.debian.org/debian/pool/main/m/meep-mpi-default/meep-mpi-default_1.7.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2580 (2.5K) Saving to: ‘meep-mpi-default_1.7.0-3.dsc’ 0K .. 100% 190M=0s 2020-08-08 06:21:54 (190 MB/s) - ‘meep-mpi-default_1.7.0-3.dsc’ saved [2580/2580] Sat Aug 8 06:21:54 UTC 2020 I: meep-mpi-default_1.7.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: meep-mpi-default Binary: meep-mpi-default, libmeep-mpi-default12, libmeep-mpi-default-dev, python-meep-mpi-default Architecture: any Version: 1.7.0-3 Maintainer: Thorsten Alteholz Homepage: https://meep.readthedocs.io Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/alteholz/meep-mpi-default Vcs-Git: https://salsa.debian.org/alteholz/meep-mpi-default.git Build-Depends: gfortran, debhelper (>= 11), libctl-dev (>= 4.1.4-2), pkg-config, libharminv-dev (>= 1.4.1), zlib1g-dev, libfftw3-dev, libhdf5-mpi-dev, libgsl-dev, liblapack-dev, mpi-default-dev, libatlas-base-dev, chrpath, dpkg-dev (>= 1.16.1~), swig, python-dev, python-numpy, python-h5py, mpi-default-bin Package-List: libmeep-mpi-default-dev deb libdevel optional arch=any libmeep-mpi-default12 deb libs optional arch=any meep-mpi-default deb science optional arch=any python-meep-mpi-default deb python optional arch=any Checksums-Sha1: b440a22182e04882f00578ca6bc45fc23c322d68 10182150 meep-mpi-default_1.7.0.orig.tar.gz de0b55c61d2a55fd2f563c68c9c489a43d318366 7452 meep-mpi-default_1.7.0-3.debian.tar.xz Checksums-Sha256: a5af8c28da2626a0987a6fd4aa97f4fcc5695cf17f9ee2247caa90208efaa8bf 10182150 meep-mpi-default_1.7.0.orig.tar.gz 7fe91954f164b1d56bb33885a3cde537114ebe01c00382555f2d8d4295be8967 7452 meep-mpi-default_1.7.0-3.debian.tar.xz Files: 6e5bb086caa536b025c52c19d993a73d 10182150 meep-mpi-default_1.7.0.orig.tar.gz 80bf4a12f7c191033b919b84fc6b97c1 7452 meep-mpi-default_1.7.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQKnBAEBCgCRFiEEYgH7/9u94Hgi6ruWlvysDTh7WEcFAlxZ3vxfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldDYy MDFGQkZGREJCREUwNzgyMkVBQkI5Njk2RkNBQzBEMzg3QjU4NDcTHGRlYmlhbkBh bHRlaG9sei5kZQAKCRCW/KwNOHtYR0hzD/0Y/Q+JTNnW/O+yp7DKp9oN9vWUNQEf dNy2+5IMNipz+/2k0D+GMdPgxlqnsn8VGd2mIc6vHMfPEPyAaLNYkWin7jtIKtVO +GsBw1Bexsijt4Cp8dGBPDCBYOz8MHodGryTDq45zI/3k+b6+su/1Exha3r0MRVE KYQQz4hUl11HGpWxbJVJq2V3+wbombSBBypeYEhRQnQ42uDDXGWI9pTm56vi9XTJ A7z2ygE0caphQolwX4SfuLiDuvlApnprb1XPQ/nzFhKMqr1VdtpNLltksLHR1Y7f lKiv6YE8VK1SXGx36c1JeVKMXYq8oF9OMJI7waAAo9oGoZV9rfuitqGoRfQuzo2d +JmknlC1md0PKmylmIcKIi+WKRgURormJTqb+rOjPLgICgXlDmKVOi1FR3X7f/zR 2CGWxUO5kguXsdk8+H2R+Wbe5goS/R7YgViiM+39QwCrxggqS+9eUSZx+8fDMli2 1bLNA9xTHe3nwcV5OBc1NIePBNkC8ySqi19cfNmbszZCQzTcsx3E8KFcSmHCOHno pfucZK2qZ+Rmng8Z4FqsY5p0eVFwbGzlPsKLuJVzQfDyjqohrVw/AuOCCdkgSIfg v7sZEQwMbFCyFsxLsxW7x+OUuyFsjG9ZmIb4n0+IgdQualGgrdo3sa3bKetEgGsn 5wD9Rsr5aBNd/Q== =04u0 -----END PGP SIGNATURE----- Sat Aug 8 06:21:54 UTC 2020 I: Checking whether the package is not for us Sat Aug 8 06:21:54 UTC 2020 I: Starting 1st build on remote node codethink-sled14-arm64.debian.net. Sat Aug 8 06:21:54 UTC 2020 I: Preparing to do remote build '1' on codethink-sled14-arm64.debian.net. Sat Aug 8 06:57:53 UTC 2020 I: Deleting $TMPDIR on codethink-sled14-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 7 18:22:05 -12 2020 I: pbuilder-time-stamp: 1596867725 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [meep-mpi-default_1.7.0-3.dsc] I: copying [./meep-mpi-default_1.7.0.orig.tar.gz] I: copying [./meep-mpi-default_1.7.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Feb 5 07:07:40 2019 -12 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./meep-mpi-default_1.7.0-3.dsc dpkg-source: info: extracting meep-mpi-default in meep-mpi-default-1.7.0 dpkg-source: info: unpacking meep-mpi-default_1.7.0.orig.tar.gz dpkg-source: info: unpacking meep-mpi-default_1.7.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying c++14.patch dpkg-source: info: applying fix-test.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8882/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8882' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.JyJecuhYoz/pbuilderrc_nyPc --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.JyJecuhYoz/b1 --logfile b1/build.log meep-mpi-default_1.7.0-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled14-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 20:25 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/8882/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: gfortran, debhelper (>= 11), libctl-dev (>= 4.1.4-2), pkg-config, libharminv-dev (>= 1.4.1), zlib1g-dev, libfftw3-dev, libhdf5-mpi-dev, libgsl-dev, liblapack-dev, mpi-default-dev, libatlas-base-dev, chrpath, dpkg-dev (>= 1.16.1~), swig, python-dev, python-numpy, python-h5py, mpi-default-bin dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libctl-dev (>= 4.1.4-2); however: Package libctl-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libharminv-dev (>= 1.4.1); however: Package libharminv-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however: Package libhdf5-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libatlas-base-dev; however: Package libatlas-base-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-h5py; however: Package python-h5py is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-bin; however: Package mpi-default-bin is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} guile-2.2{a} guile-2.2-dev{a} guile-2.2-libs{a} ibverbs-providers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libatlas-base-dev{a} libatlas3-base{a} libblas-dev{a} libblas3{a} libbsd0{a} libcroco3{a} libctl-dev{a} libctl7{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgc-dev{a} libgc1c2{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libgssapi-krb5-2{a} libharminv-dev{a} libharminv3{a} libhdf5-103{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103{a} libhdf5-openmpi-dev{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline-dev{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} python{a} python-dev{a} python-h5py{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-six{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig3.0{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libctl-doc libglib2.0-data libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 104 MB of archives. After unpacking 384 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 openssh-client arm64 1:7.9p1-10+deb10u2 [757 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 chrpath arm64 0.16-2+b1 [16.0 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libgfortran-8-dev arm64 8.3.0-6 [346 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 gfortran-8 arm64 8.3.0-6 [7861 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 gfortran arm64 4:8.3.0-1 [1420 B] Get: 61 http://deb.debian.org/debian buster/main arm64 libgc1c2 arm64 1:7.6.4-0.4 [214 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 guile-2.2-libs arm64 2.2.4+1-2+deb10u1 [4938 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 guile-2.2 arm64 2.2.4+1-2+deb10u1 [20.3 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libncurses-dev arm64 6.1+20181013-2+deb10u2 [324 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libncurses5-dev arm64 6.1+20181013-2+deb10u2 [948 B] Get: 67 http://deb.debian.org/debian buster/main arm64 libreadline-dev arm64 7.0-5 [128 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libltdl-dev arm64 2.4.6-9 [162 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libgmpxx4ldbl arm64 2:6.1.2+dfsg-4 [22.6 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libgmp-dev arm64 2:6.1.2+dfsg-4 [608 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libgc-dev arm64 1:7.6.4-0.4 [371 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 pkg-config arm64 0.29-6 [62.2 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 guile-2.2-dev arm64 2.2.4+1-2+deb10u1 [599 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libnl-3-200 arm64 3.4.0-1 [54.9 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libnl-route-3-200 arm64 3.4.0-1 [134 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libibverbs1 arm64 22.1-1 [47.8 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 ibverbs-providers arm64 22.1-1 [174 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libaec0 arm64 1.0.2-1 [18.8 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libsz2 arm64 1.0.2-1 [6456 B] Get: 80 http://deb.debian.org/debian buster/main arm64 libaec-dev arm64 1.0.2-1 [17.1 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libatlas3-base arm64 3.10.3-8 [2409 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libatlas-base-dev arm64 3.10.3-8 [2954 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libblas-dev arm64 3.8.0-2 [105 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libctl7 arm64 4.1.4-3 [94.8 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libctl-dev arm64 4.1.4-3 [65.7 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libevent-2.1-6 arm64 2.1.8-stable-4 [150 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libevent-core-2.1-6 arm64 2.1.8-stable-4 [112 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libevent-pthreads-2.1-6 arm64 2.1.8-stable-4 [47.7 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libfftw3-double3 arm64 3.3.8-2 [385 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 libfftw3-long3 arm64 3.3.8-2 [526 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 libfftw3-single3 arm64 3.3.8-2 [630 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 libfftw3-bin arm64 3.3.8-2 [47.4 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libfftw3-dev arm64 3.3.8-2 [1455 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 libgslcblas0 arm64 2.5+dfsg-6 [69.5 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 libgsl23 arm64 2.5+dfsg-6 [760 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 libgsl-dev arm64 2.5+dfsg-6 [938 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libharminv3 arm64 1.4.1-2 [13.7 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libharminv-dev arm64 1.4.1-2 [4916 B] Get: 102 http://deb.debian.org/debian buster/main arm64 libhdf5-103 arm64 1.10.4+repack-10 [1168 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libnuma1 arm64 2.0.12-1 [25.6 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 libhwloc5 arm64 1.11.12-3 [97.9 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 libpciaccess0 arm64 0.14-1 [51.0 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 ocl-icd-libopencl1 arm64 2.2.12-2 [37.4 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 libhwloc-plugins arm64 1.11.12-3 [16.9 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 libpmix2 arm64 3.1.2-3 [455 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 libopenmpi3 arm64 3.1.3-11 [1996 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 libhdf5-openmpi-103 arm64 1.10.4+repack-10 [1203 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo-dev arm64 1:1.5.2-2+b1 [186 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 openmpi-common all 3.1.3-11 [165 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 libnl-3-dev arm64 3.4.0-1 [98.2 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 libnl-route-3-dev arm64 3.4.0-1 [162 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 libibverbs-dev arm64 22.1-1 [356 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 libnuma-dev arm64 2.0.12-1 [40.0 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 libhwloc-dev arm64 1.11.12-3 [165 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 openmpi-bin arm64 3.1.3-11 [199 kB] Get: 122 http://deb.debian.org/debian buster/main arm64 libopenmpi-dev arm64 3.1.3-11 [974 kB] Get: 123 http://deb.debian.org/debian buster/main arm64 libhdf5-openmpi-dev arm64 1.10.4+repack-10 [2641 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 mpi-default-dev arm64 1.13 [5476 B] Get: 125 http://deb.debian.org/debian buster/main arm64 libhdf5-mpi-dev arm64 1.10.4+repack-10 [27.3 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 liblapack-dev arm64 3.8.0-2 [1524 kB] Get: 127 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 128 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 129 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 mpi-default-bin arm64 1.13 [4672 B] Get: 132 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 133 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 134 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 135 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 137 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 138 http://deb.debian.org/debian buster/main arm64 python-h5py arm64 2.8.0-3 [572 kB] Get: 139 http://deb.debian.org/debian buster/main arm64 swig3.0 arm64 3.0.12-2 [1321 kB] Get: 140 http://deb.debian.org/debian buster/main arm64 swig arm64 3.0.12-2 [310 kB] Fetched 104 MB in 8s (13.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_arm64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_arm64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:arm64. Preparing to unpack .../14-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:arm64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython2-stdlib:arm64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.16-1) ... Setting up libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20664 files and directories currently installed.) Preparing to unpack .../000-python_2.7.16-1_arm64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../006-libedit2_3.1-20181209-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../007-libkeyutils1_1.6-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6-6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../008-libkrb5support0_1.17-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../009-libk5crypto3_1.17-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../010-libkrb5-3_1.17-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../011-libgssapi-krb5-2_1.17-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.17-3) ... Selecting previously unselected package openssh-client. Preparing to unpack .../012-openssh-client_1%3a7.9p1-10+deb10u2_arm64.deb ... Unpacking openssh-client (1:7.9p1-10+deb10u2) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../013-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.18-2_arm64.deb ... 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Setting up autotools-dev (20180224.1) ... Setting up libgmpxx4ldbl:arm64 (2:6.1.2+dfsg-4) ... Setting up libexpat1-dev:arm64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:arm64 (1:1.5.2-2+b1) ... Setting up swig3.0 (3.0.12-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:1.5.2-2+b1) ... Setting up libgsl23:arm64 (2.5+dfsg-6) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29-6) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libltdl7:arm64 (2.4.6-9) ... Setting up libfftw3-double3:arm64 (3.3.8-2) ... Setting up libevent-core-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up libevent-2.1-6:arm64 (2.1.8-stable-4) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libnuma1:arm64 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:arm64 (2.2.12-2) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libnl-3-200:arm64 (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libgc-dev:arm64 (1:7.6.4-0.4) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up chrpath (0.16-2+b1) ... Setting up libsz2:arm64 (1.0.2-1) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgfortran-8-dev:arm64 (8.3.0-6) ... Setting up libevent-pthreads-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libncurses-dev:arm64 (6.1+20181013-2+deb10u2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up swig (3.0.12-2) ... Setting up libgmp-dev:arm64 (2:6.1.2+dfsg-4) ... Setting up libatlas3-base:arm64 (3.10.3-8) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.6-9) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libhwloc5:arm64 (1.11.12-3) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libaec-dev:arm64 (1.0.2-1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up m4 (1.4.18-2) ... Setting up libreadline-dev:arm64 (7.0-5) ... Setting up libhwloc-plugins:arm64 (1.11.12-3) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libatlas-base-dev:arm64 (3.10.3-8) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libnuma-dev:arm64 (2.0.12-1) ... Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libblas3:arm64 (3.8.0-2) ... Setting up libhdf5-103:arm64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up libharminv3 (1.4.1-2) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:arm64 (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libncurses5-dev:arm64 (6.1+20181013-2+deb10u2) ... Setting up libharminv-dev (1.4.1-2) ... Setting up libfftw3-dev:arm64 (3.3.8-2) ... Setting up guile-2.2-libs:arm64 (2.2.4+1-2+deb10u1) ... Setting up libblas-dev:arm64 (3.8.0-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:arm64 (22.1-1) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up liblapack3:arm64 (3.8.0-2) ... Setting up libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up guile-2.2 (2.2.4+1-2+deb10u1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/guile/2.2/bin/guile to provide /usr/bin/guile (guile) in auto mode Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpmix2:arm64 (3.1.2-3) ... Setting up ibverbs-providers:arm64 (22.1-1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libopenmpi3:arm64 (3.1.3-11) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:arm64 (3.4.0-1) ... Setting up libltdl-dev:arm64 (2.4.6-9) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libctl7 (4.1.4-3) ... Setting up guile-2.2-dev (2.2.4+1-2+deb10u1) ... update-alternatives: using /usr/bin/guile-config-2.2 to provide /usr/bin/guile-config (guile-config) in auto mode Setting up libhdf5-openmpi-103:arm64 (1.10.4+repack-10) ... Setting up liblapack-dev:arm64 (3.8.0-2) ... Setting up libpython2-dev:arm64 (2.7.16-1) ... Setting up libhwloc-dev:arm64 (1.11.12-3) ... Setting up python (2.7.16-1) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python2-dev (2.7.16-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up mpi-default-bin (1.13) ... Setting up libibverbs-dev:arm64 (22.1-1) ... Setting up libctl-dev (4.1.4-3) ... Setting up libpython-dev:arm64 (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up libopenmpi-dev:arm64 (3.1.3-11) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.10.4+repack-10) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python-dev (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up mpi-default-dev (1.13) ... Setting up python-h5py (2.8.0-3) ... Setting up libhdf5-mpi-dev (1.10.4+repack-10) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/meep-mpi-default-1.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package meep-mpi-default dpkg-buildpackage: info: source version 1.7.0-3 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by Thorsten Alteholz dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf debian/rules override_dh_clean make[1]: Entering directory '/build/meep-mpi-default-1.7.0' # we do not need this anymore rm -f tests/latest_output dh_clean make[1]: Leaving directory '/build/meep-mpi-default-1.7.0' debian/rules build dh build --with autoreconf dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:66: installing './compile' configure.ac:66: installing './config.guess' configure.ac:66: installing './config.sub' configure.ac:11: installing './install-sh' configure.ac:11: installing './missing' libmeepgeom/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' python/Makefile.am:115: installing './py-compile' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/meep-mpi-default-1.7.0' F77=gfortran dh_auto_configure -- --host=aarch64-linux-gnu --build=aarch64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --with-mpi=yes --enable-maintainer-mode ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --build=aarch64-linux-gnu --prefix=/usr --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --with-libctl=/usr/share/libctl --with-gcc-arch=no --enable-shared --with-pic --enable-cxx --with-mpi=yes --enable-maintainer-mode configure: WARNING: unrecognized options: --enable-cxx checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-g++... none checking for mpic++... mpic++ checking for MPI_Init... yes checking for mpi.h... yes checking for extra flag needed to combine stdio.h and mpi.h... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of aarch64-linux-gnu-gcc... none checking for C++ compiler vendor... gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpic++ -E checking for ld used by mpic++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the mpic++ linker (/usr/bin/ld) supports shared libraries... yes checking for mpic++ option to produce PIC... -fPIC -DPIC checking if mpic++ PIC flag -fPIC -DPIC works... yes checking if mpic++ static flag -static works... no checking if mpic++ supports -c -o file.o... yes checking if mpic++ supports -c -o file.o... (cached) yes checking whether the mpic++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for latex2html... no configure: WARNING: Cannot find latex2html in your path! checking for sin in -lm... yes checking for fftw_plan_dft_1d in -lfftw3... yes checking for aarch64-linux-gnu-g77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_... no checking for ATL_xerbla in -latlas... yes checking for sgemm_ in -lf77blas... yes checking for cblas_dgemm in -lcblas... yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for pkg-config... /usr/bin/pkg-config checking for harminv >= 1.1... yes checking HARMINV_CFLAGS... checking HARMINV_LIBS... -lharminv checking mpb.h usability... no checking mpb.h presence... no checking for mpb.h... no checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_sf_bessel_Jn in -lgsl... yes checking for deflate in -lz... yes checking for H5Pcreate in -lhdf5... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pset_mpi... no checking for H5Pset_fapl_mpio... yes checking for mpirun... mpirun checking for guile-config... guile-config checking if linking to guile works... yes checking libguile.h usability... yes checking libguile.h presence... yes checking for libguile.h... yes checking guile/gh.h usability... no checking guile/gh.h presence... no checking for guile/gh.h... no checking for scm_make_smob_type... yes checking for SCM_SMOB_PREDICATE... no checking for SCM_SMOB_DATA... no checking for SCM_NEWSMOB... no checking how to activate readline in Guile... ice-9 readline checking for libctl dir... /usr/share/libctl checking for gen-ctl-io... gen-ctl-io checking for ctl_get_vector3 in -lctl... yes checking ctl.h usability... yes checking ctl.h presence... yes checking for ctl.h... yes checking whether libctl version is at least 4.1.0... ok checking for libctl_quiet feature... yes checking for vector3_dot in -lctlgeom... yes checking libGDSII.h usability... no checking libGDSII.h presence... no checking for libGDSII.h... no checking for feenableexcept... yes checking whether feenableexcept declaration is usable... yes checking whether to catch and ignore SIGFPE signals... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for BSDgettimeofday... no checking for gettimeofday... yes checking for cblas_ddot... yes checking for cblas_daxpy... yes checking for jn... yes checking for C/C++ restrict keyword... __restrict checking for python... /usr/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/dist-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages checking for Python include directory... /usr/include/python2.7 checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes checking for Numpy include directory... /usr/lib/python2.7/dist-packages/numpy/core/include checking for numpy/arrayobject.h... yes checking for coverage module... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating meep-pkgconfig config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating scheme/Makefile config.status: creating scheme/meep.scm config.status: creating libmeepgeom/Makefile config.status: creating libpympb/Makefile config.status: creating python/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --enable-cxx make[1]: Leaving directory '/build/meep-mpi-default-1.7.0' dh_auto_build make -j8 make[1]: Entering directory '/build/meep-mpi-default-1.7.0' make all-recursive make[2]: Entering directory '/build/meep-mpi-default-1.7.0' Making all in src make[3]: Entering directory '/build/meep-mpi-default-1.7.0/src' make sphere_quad (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/build/meep-mpi-default-1.7.0/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h make all-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/src' /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array_slice.lo array_slice.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o anisotropic_averaging.lo anisotropic_averaging.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W 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-Wall -W -c -o casimir.lo casimir.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o control_c.lo control_c.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cw_fields.lo cw_fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c 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casimir.cpp -fPIC -DPIC -o .libs/casimir.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o .libs/array_slice.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o .libs/cw_fields.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c control_c.cpp -fPIC -DPIC -o .libs/control_c.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o .libs/boundaries.o boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': boundaries.cpp:68:5: warning: this statement may fall through [-Wimplicit-fallthrough=] switch (d) { ^~~~~~ boundaries.cpp:73:3: note: here case D3: ^~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c control_c.cpp -fPIC -DPIC -o control_c.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft.lo dft.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o .libs/dft.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o .libs/dft_ldos.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o energy_and_flux.lo energy_and_flux.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o .libs/energy_and_flux.o dft.cpp: In function 'cdouble* meep::collapse_empty_dimensions(cdouble*, int*, int*, meep::volume)': dft.cpp:916:54: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'cdouble' {aka 'struct std::complex'}; use assignment or value-initialization instead [-Wclass-memaccess] memset(reduced_array,0,reduced_size*sizeof(cdouble)); ^ In file included from meep/vec.hpp:22, from meep.hpp:24, from dft.cpp:24: /usr/include/c++/8/complex:1221:12: note: 'cdouble' {aka 'struct std::complex'} declared here struct complex ^~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 energy_and_flux.cpp: In member function 'double meep::fields::flux_in_box_wrongH(meep::direction, const meep::volume&)': energy_and_flux.cpp:219:26: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] cs[0] = cE[i]; cs[1] = cH[i]; ~~~~~~^~~~~~~ energy_and_flux.cpp:219:26: warning: 'cH' may be used uninitialized in this function [-Wmaybe-uninitialized] energy_and_flux.cpp:219:11: warning: '*((void*)& cE +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] cs[0] = cE[i]; cs[1] = cH[i]; ~~~~~~^~~~~~~ energy_and_flux.cpp:219:11: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o fields.lo fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o .libs/fields.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o loop_in_chunks.lo loop_in_chunks.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5fields.lo h5fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o .libs/h5fields.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5file.lo h5file.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o .libs/h5file.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o initialize.lo initialize.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o .libs/initialize.o In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from /usr/include/hdf5/openmpi/H5public.h:60, from /usr/include/hdf5/openmpi/hdf5.h:22, from h5file.cpp:38: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o h5fields.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o loop_in_chunks.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c initialize.cpp -fPIC -DPIC -o initialize.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate.lo integrate.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o integrate2.lo integrate2.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o .libs/integrate.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o .libs/integrate2.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5file.cpp -fPIC -DPIC -o h5file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o monitor.lo monitor.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mympi.lo mympi.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o .libs/monitor.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o .libs/mympi.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o multilevel-atom.lo multilevel-atom.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.lo near2far.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o .libs/multilevel-atom.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate.cpp -fPIC -DPIC -o integrate.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o monitor.cpp: In member function 'meep::volume meep::fields_chunk::get_field_gv(meep::component) const': monitor.cpp:170:25: warning: this statement may fall through [-Wimplicit-fallthrough=] c = gv.eps_component(); ~~~~~~~~~~~~~~~~^~ monitor.cpp:171:3: note: here default: ^~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2684, from mympi.cpp:32: /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function 'virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)': /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:46: warning: cast between incompatible function types from 'void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:59: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); ^~~~ output_directory.cpp: In member function 'void meep::structure::set_output_directory(const char*)': output_directory.cpp:43:10: warning: ignoring return value of 'int symlink(const char*, const char*)', declared with attribute warn_unused_result [-Wunused-result] symlink(name, symlink_name); ~~~~~~~^~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:115:32: warning: '.cpp' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(sourcename, buflen, "%s.cpp", stripped_name); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:125:32: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(outdirname, buflen, "%s-out", basename); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:135:32: warning: '%s' directive output may be truncated writing up to 299 bytes into a region of size between 0 and 299 [-Wformat-truncation=] snprintf(outsrcname, buflen, "%s/%s", outdirname, sourcename); ^~~~~~~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 600 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ output_directory.cpp:131:36: warning: '-out-' directive output may be truncated writing 5 bytes into a region of size between 1 and 300 [-Wformat-truncation=] snprintf(outdirname, buflen, "%s-out-%d", basename, i++); ^~~~~~~~~~~ output_directory.cpp:131:36: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:873, from output_directory.cpp:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 7 and 315 bytes into a destination of size 300 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. 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'E' : 'H', i, c, d); ^~~~~~~~~~~~~~~~~~~ structure_dump.cpp:256:31: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:873, from structure_dump.cpp:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ susceptibility.cpp:158:13: warning: 'bool meep::lorentzian_unstable(double, double, double)' defined but not used [-Wunused-function] static bool lorentzian_unstable(double omega_0, double gamma, double dt) { ^~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o structure_dump.cpp: In member function 'void meep::structure::load(const char*)': structure_dump.cpp:545:31: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 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libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/aarch64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo control_c.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo step_generic_stride1.lo -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/control_c.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/step_generic_stride1.o -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeep.so.12 -o .libs/libmeep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.12" && ln -s "libmeep.so.12.0.0" "libmeep.so.12") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.12.0.0" "libmeep.so") libtool: link: aarch64-linux-gnu-ar cru .libs/libmeep.a array_slice.o anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o control_c.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o loop_in_chunks.o h5fields.o h5file.o initialize.o integrate.o integrate2.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o structure_dump.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o step_generic_stride1.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/libmeep.a libtool: link: ( cd ".libs" && rm -f "libmeep.la" && ln -s "../libmeep.la" "libmeep.la" ) make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/src' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/src' Making all in tests make[3]: Entering directory '/build/meep-mpi-default-1.7.0/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/tests' Making all in scheme make[3]: Entering directory '/build/meep-mpi-default-1.7.0/scheme' gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl gen-ctl-io --cxx --swig -o ctl-io.i meep.scm /usr/share/libctl (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; perl -pe 's/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){.*$/%rename(meep_\1) meep::\1;/' ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | grep "%rename" | sort -u; echo; grep -hv typedef ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/(inline|const|extern|static) +//g' | perl -pe 's/^[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%rename(meep_\1) meep::\1;/' | grep "%rename" | sort -u; ) > meep_renames.i (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; for f in ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp; do egrep "^enum" $f | perl -pe 's/enum +([A-Za-z_0-9:]+).*$/\1/g' | while read enum; do cat $f | tr -d '\n' | perl -pe 's/.*enum +'${enum}' *{([^}]*)}.*/\1/g' | perl -pe 's/= *[0-9]+//g' |tr -d ' \t' | tr ',' '\n' | perl -pe 's/^(.*)$/'"%rename(meep_${enum}_\1) meep::\1;/g"; echo; done; done;) > meep_enum_renames.i Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/^ *class +([A-Za-z_0-9:]*)( *| *:[^{]*){ <-- HERE .*$/ at -e line 1. (echo "// AUTOMATICALLY GENERATED -- DO NOT EDIT"; grep -h friend ../src/meep.hpp ../src/meep/vec.hpp ../src/meep/mympi.hpp | perl -pe 's/^ *friend +[A-Za-z_0-9:<>]+[* ]+([A-Za-z_0-9:]*) *\(.*$/%ignore \1;/' | grep "%ignore" | sort -u;) > meep_swig_bug_workaround.i (perl -pe 's/%rename\(([A-Za-z0-9_]*)\) *([A-Za-z0-9:_]*);$/(define \2 (\1))/' meep_enum_renames.i | perl -pe 's/[A-Za-z0-9:_]*:://g' | perl -pe 's/_/-/g' | perl -pe 's,//,;,'; echo "(define Centered Dielectric)") > meep-enums.scm ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" swig -I../src -c++ -guile -o meep_wrap.cxx ./meep.i ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" cp -f /usr/share/libctl/base/main.c main.cpp cp -f /usr/share/libctl/utils/geom.c geom.cpp gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl ;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0 ;;; or pass the --no-auto-compile argument to disable. ;;; compiling /usr/share/libctl/base/include.scm ;;; WARNING: compilation of /usr/share/libctl/base/include.scm failed: ;;; failed to create path for auto-compiled file "/usr/share/libctl/base/include.scm" patch -p0 meep_wrap.cxx < ./meep_wrap.patch patching file meep_wrap.cxx Hunk #1 succeeded at 778 (offset 27 lines). sed -i.bak '/(SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob))/ s/swig_collectable_tag, smob)/swig_collectable_tag, smob) || SCM_SMOB_PREDICATE((swig_collectable_tag \& ~0xff00), (smob))/' meep_wrap.cxx; make all-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/scheme' mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep.o `test -f 'meep.cpp' || echo './'`meep.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-structure.o `test -f 'structure.cpp' || echo './'`structure.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-meep_wrap.o `test -f 'meep_wrap.cxx' || echo './'`meep_wrap.cxx mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-main.o `test -f 'main.cpp' || echo './'`main.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-geom.o `test -f 'geom.cpp' || echo './'`geom.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.7.0, Copyright (C) 2005-2018 Massachusetts Insitute of Technology."'"' -pthread -I/usr/include/guile/2.2 -I../src -Wno-unused-parameter -Wno-unused-variable -Wno-empty-body -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meep-ctl-io.o `test -f 'ctl-io.cpp' || echo './'`ctl-io.cpp main.cpp: In function 'char* make_name(const char*, const char*)': main.cpp:140:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ndir > 5 && !strcmp(".libs", dir+ndir-5)) ^~ main.cpp:142:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' strcpy(base0, for_base); base = basename(base0); ^~~~~~ In file included from ctl-io.h:7, from main.cpp:37: main.cpp: In function 'void main_entry(void*, int, char**)': main.cpp:202:48: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure ("subplex", (SCM (*)(void)) subplex_scm, 7, 0, 0); ^~~~~~~~~~~ main.cpp:212:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] (SCM (*)(void)) adaptive_integration_scm, 6, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:216:23: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] (SCM (*)(void)) cadaptive_integration_scm, 6, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ctl-io.h:7, from ctl-io.cpp:7: ctl-io.cpp: In function 'void ctlio::export_external_functions()': ctl-io.cpp:1920:50: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("square-basis-aux", (SCM (*)()) square_basis_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~ ctl-io.cpp:1921:63: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM, SCM, SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("range-overlap-with-object-aux", (SCM (*)()) range_overlap_with_object_aux, 5, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1922:67: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("display-geometric-object-info-aux", (SCM (*)()) display_geometric_object_info_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1923:63: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("point-in-periodic-object?-aux", (SCM (*)()) point_in_periodic_objectp_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1924:54: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("normal-to-object-aux", (SCM (*)()) normal_to_object_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~ ctl-io.cpp:1925:54: warning: cast between incompatible function types from 'scm_unused_struct* (*)(SCM, SCM)' {aka 'scm_unused_struct* (*)(scm_unused_struct*, scm_unused_struct*)'} to 'scm_unused_struct* (*)()' [-Wcast-function-type] gh_new_procedure("point-in-object?-aux", (SCM (*)()) point_in_objectp_aux, 2, 0, 0); ^~~~~~~~~~~~~~~~~~~~ geom.cpp: In function 'boolean point_in_fixed_pobjectp(vector3, ctlio::geometric_object*)': geom.cpp:320:7: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ geom.cpp:322:3: note: here case GEOM PRISM: ^~~~ geom.cpp: In function 'vector3 normal_to_fixed_object(vector3, ctlio::geometric_object)': geom.cpp:481:7: warning: this statement may fall through [-Wimplicit-fallthrough=] } // switch ^ geom.cpp:483:3: note: here case GEOM PRISM: ^~~~ geom.cpp: In function 'int intersect_line_with_object(vector3, vector3, ctlio::geometric_object, double*)': geom.cpp:909:8: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ geom.cpp:912:3: note: here default: ^~~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:29774:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg1 = (meep::component const) scm_to_int(argv[0]); ^ meep_wrap.cxx:29777:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] arg2 = (meep::component const) scm_to_int(argv[1]); ^ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/scheme' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/scheme' Making all in libmeepgeom make[3]: Entering directory '/build/meep-mpi-default-1.7.0/libmeepgeom' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o meepgeom.lo meepgeom.cpp /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 meepgeom.cpp: In member function 'void meep_geom::geom_epsilon::eff_chi1inv_matrix(meep::component, meep_geom::symmetric_matrix*, const meep::volume&, double, int)': meepgeom.cpp:747:16: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] mat_behind = mat1; ~~~~~~~~~~~^~~~~~ meepgeom.cpp:659:17: note: 'mat1' was declared here material_type mat1, mat2; ^~~~ meepgeom.cpp:714:42: warning: 'mat2' may be used uninitialized in this function [-Wmaybe-uninitialized] (id2 == id || material_type_equal(mat2,mat)))) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ meepgeom.cpp:659:23: note: 'mat2' was declared here material_type mat1, mat2; ^~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libmeepgeom.la -rpath /usr/lib/aarch64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -Wl,-rpath -Wl,/build/meep-mpi-default-1.7.0/src/.libs ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: link: (cd ".libs" && rm -f "libmeepgeom.so.12" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so.12") libtool: link: (cd ".libs" && rm -f "libmeepgeom.so" && ln -s "libmeepgeom.so.12.0.0" "libmeepgeom.so") libtool: link: aarch64-linux-gnu-ar cru .libs/libmeepgeom.a meepgeom.o GDSIIgeom.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/libmeepgeom.a libtool: link: ( cd ".libs" && rm -f "libmeepgeom.la" && ln -s "../libmeepgeom.la" "libmeepgeom.la" ) /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/bend-flux-ll bend-flux-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/libmeepgeom' Making all in python make[3]: Entering directory '/build/meep-mpi-default-1.7.0/python' swig -Wextra -I../src -I../libmeepgeom -I.. -outdir . -c++ -python -o meep-python.cpp ./meep.i /bin/bash: git: command not found cp meep.py __init__.py echo "__version__ = ''" >> __init__.py if [[ "3.0.12" = 3.0.12 ]]; then \ sed -i.bak '/^if _swig_python_version_info >= (2, 7, 0):/,/^else:/d' __init__.py; \ sed -i.bak 's/ import _meep/from . import _meep/' __init__.py; \ fi make all-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/python' /bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cpp' || echo './'`meep-python.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o .libs/_meep_la-meep-python.o meep-python.cpp: In function 'PyObject* _wrap_abort__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:18161:103: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_abort__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_master_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82498:111: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_master_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_debug_printf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82537:110: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_debug_printf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ meep-python.cpp: In function 'PyObject* _wrap_master_fprintf__varargs__(PyObject*, PyObject*, PyObject*)': meep-python.cpp:82576:112: warning: unused parameter 'varargs' [-Wunused-parameter] SWIGINTERN PyObject *_wrap_master_fprintf__varargs__(PyObject *SWIGUNUSEDPARM(self), PyObject *args, PyObject *varargs) { ~~~~~~~~~~^~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I../src -I../libmeepgeom -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cpp -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-mpi-default-1.7.0/src/.libs -Wl,-rpath -Wl,/build/meep-mpi-default-1.7.0/libmeepgeom/.libs ../src/.libs/libmeep.so ../libmeepgeom/.libs/libmeepgeom.so -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.12" && ln -s "_meep.so.12.0.0" "_meep.so.12") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.12.0.0" "_meep.so") libtool: link: aarch64-linux-gnu-ar cru .libs/_meep.a _meep_la-meep-python.o aarch64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: aarch64-linux-gnu-ranlib .libs/_meep.a libtool: link: ( cd ".libs" && rm -f "_meep.la" && ln -s "../_meep.la" "_meep.la" ) mkdir -p meep cp __init__.py ./geom.py ./simulation.py ./source.py ./materials.py .libs/_meep.so meep make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[3]: Entering directory '/build/meep-mpi-default-1.7.0' cp -f ./meep-pkgconfig meep.pc make[3]: Leaving directory '/build/meep-mpi-default-1.7.0' make[2]: Leaving directory '/build/meep-mpi-default-1.7.0' make[1]: Leaving directory '/build/meep-mpi-default-1.7.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/meep-mpi-default-1.7.0' echo #if [ "" = "armel" ] || \ # [ "" = "mips" ] || \ # [ "" = "mipsel" ] || \ # [ "" = "powerpc" ] || \ # [ "" = "sparc" ] ; then \ # echo "Do not make tests on this architecture" ;\ #else \ # echo "Do make tests on this architecture" ;\ # make check; \ # find; \ # cat python/test-suite.log; \ #fi # check whether testsuite runs everywhere make check; \ cat tests/test-suite.log make[2]: Entering directory '/build/meep-mpi-default-1.7.0' Making check in src make[3]: Entering directory '/build/meep-mpi-default-1.7.0/src' make check-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/src' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/src' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/src' Making check in tests make[3]: Entering directory '/build/meep-mpi-default-1.7.0/tests' make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml make[4]: Entering directory '/build/meep-mpi-default-1.7.0/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o aniso_disp.o aniso_disp.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now 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-Werror=format-security -Wall -W -c -o pml.o pml.cpp pml.cpp: In function 'int check_pmlcyl(double (*)(const meep::vec&))': pml.cpp:220:10: warning: variable 'prev_refl_const' set but not used [-Wunused-but-set-variable] double prev_refl_const = 0.0, refl_const = 0.0; ^~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o pml pml.o ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/pml pml.o ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/tests' make check-TESTS make[4]: Entering directory '/build/meep-mpi-default-1.7.0/tests' make[5]: Entering directory '/build/meep-mpi-default-1.7.0/tests' PASS: aniso_disp PASS: bench PASS: bragg_transmission PASS: convergence_cyl_waveguide PASS: cylindrical PASS: flux PASS: harmonics PASS: integrate PASS: known_results PASS: near2far PASS: one_dimensional PASS: physical PASS: stress_tensor PASS: symmetry PASS: three_d PASS: two_dimensional PASS: 2D_convergence PASS: h5test PASS: pml ============================================================================ Testsuite summary for meep 1.7.0 ============================================================================ # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/meep-mpi-default-1.7.0/tests' make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/tests' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/tests' Making check in scheme make[3]: Entering directory '/build/meep-mpi-default-1.7.0/scheme' make check-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/scheme' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/scheme' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/scheme' Making check in libmeepgeom make[3]: Entering directory '/build/meep-mpi-default-1.7.0/libmeepgeom' make pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d make[4]: Entering directory '/build/meep-mpi-default-1.7.0/libmeepgeom' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o pw-source-ll.o pw-source-ll.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o pw-source-ll pw-source-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/pw-source-ll pw-source-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o ring-ll.o ring-ll.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o ring-ll ring-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu 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-I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o cyl-ellipsoid-ll.o cyl-ellipsoid-ll.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o cyl-ellipsoid-ll cyl-ellipsoid-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/cyl-ellipsoid-ll cyl-ellipsoid-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 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-fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/absorber-1d-ll absorber-1d-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array-slice-ll.o array-slice-ll.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o array-slice-ll array-slice-ll.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/array-slice-ll array-slice-ll.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o user-defined-material.o user-defined-material.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro 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-lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/dft-fields dft-fields.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o gdsII-3d.o gdsII-3d.cpp /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o libmeepgeom.la -lctlgeom ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/gdsII-3d gdsII-3d.o ./.libs/libmeepgeom.so -lctlgeom ../src/.libs/libmeep.so -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/libmeepgeom' make check-TESTS make[4]: Entering directory '/build/meep-mpi-default-1.7.0/libmeepgeom' make[5]: Entering directory '/build/meep-mpi-default-1.7.0/libmeepgeom' PASS: cyl-ellipsoid-ll PASS: array-slice-ll ============================================================================ Testsuite summary for meep 1.7.0 ============================================================================ # TOTAL: 2 # PASS: 2 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/meep-mpi-default-1.7.0/libmeepgeom' make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/libmeepgeom' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/libmeepgeom' Making check in python make[3]: Entering directory '/build/meep-mpi-default-1.7.0/python' make check-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/python' make check-TESTS make[5]: Entering directory '/build/meep-mpi-default-1.7.0/python' make[6]: Entering directory '/build/meep-mpi-default-1.7.0/python' FAIL: tests/3rd_harm_1d.py FAIL: tests/absorber_1d.py FAIL: tests/antenna_radiation.py FAIL: tests/bend_flux.py FAIL: tests/cavity_arrayslice.py FAIL: tests/chunks.py FAIL: tests/cyl_ellipsoid.py FAIL: tests/dft_fields.py FAIL: tests/field_functions.py FAIL: tests/force.py PASS: tests/fragment_stats.py FAIL: tests/geom.py FAIL: tests/holey_wvg_bands.py FAIL: tests/holey_wvg_cavity.py FAIL: tests/ldos.py FAIL: tests/multilevel_atom.py FAIL: tests/physical.py FAIL: tests/pw_source.py FAIL: tests/refl_angular.py FAIL: tests/ring.py FAIL: tests/ring_cyl.py FAIL: tests/simulation.py FAIL: tests/source.py FAIL: tests/user_defined_material.py ============================================================================ Testsuite summary for meep 1.7.0 ============================================================================ # TOTAL: 24 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 23 # XPASS: 0 # ERROR: 0 ============================================================================ See python/test-suite.log Please report to meep@ab-initio.mit.edu ============================================================================ make[6]: *** [Makefile:967: test-suite.log] Error 1 make[6]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[5]: *** [Makefile:1075: check-TESTS] Error 2 make[5]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[4]: *** [Makefile:1141: check-am] Error 2 make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[3]: *** [Makefile:1143: check] Error 2 make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[2]: *** [Makefile:508: check-recursive] Error 1 make[2]: Leaving directory '/build/meep-mpi-default-1.7.0' ====================================== meep 1.7.0: tests/test-suite.log ====================================== # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 make[1]: Leaving directory '/build/meep-mpi-default-1.7.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/meep-mpi-default-1.7.0' dh_installchangelogs NEWS.md dh_auto_install make -j1 install DESTDIR=/build/meep-mpi-default-1.7.0/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/meep-mpi-default-1.7.0' Making install in src make[3]: Entering directory '/build/meep-mpi-default-1.7.0/src' make install-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/src' make[5]: Entering directory '/build/meep-mpi-default-1.7.0/src' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.12.0.0 /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 libtool: install: (cd /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so.12 || { rm -f libmeep.so.12 && ln -s libmeep.so.12.0.0 libmeep.so.12; }; }) libtool: install: (cd /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.12.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.12.0.0 libmeep.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeep.lai /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.la libtool: install: /usr/bin/install -c .libs/libmeep.a /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.a libtool: install: chmod 644 /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/include' /usr/bin/install -c -m 644 meep.hpp '/build/meep-mpi-default-1.7.0/debian/tmp/usr/include' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meep/mympi.hpp meep/vec.hpp '/build/meep-mpi-default-1.7.0/debian/tmp/usr/include/meep' make[5]: Leaving directory '/build/meep-mpi-default-1.7.0/src' make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/src' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/src' Making install in tests make[3]: Entering directory '/build/meep-mpi-default-1.7.0/tests' make[4]: Entering directory '/build/meep-mpi-default-1.7.0/tests' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/tests' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/tests' Making install in scheme make[3]: Entering directory '/build/meep-mpi-default-1.7.0/scheme' make install-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/scheme' make[5]: Entering directory '/build/meep-mpi-default-1.7.0/scheme' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-mpi-default-1.7.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-mpi-default-1.7.0/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/share/meep' /usr/bin/install -c -m 644 meep.scm meep-enums.scm casimir.scm materials.scm '/build/meep-mpi-default-1.7.0/debian/tmp/usr/share/meep' make[5]: Leaving directory '/build/meep-mpi-default-1.7.0/scheme' make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/scheme' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/scheme' Making install in libmeepgeom make[3]: Entering directory '/build/meep-mpi-default-1.7.0/libmeepgeom' make[4]: Entering directory '/build/meep-mpi-default-1.7.0/libmeepgeom' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmeepgeom.la '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libmeepgeom.la' libtool: install: (cd /build/meep-mpi-default-1.7.0/libmeepgeom; /bin/bash "/build/meep-mpi-default-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libmeepgeom.la -rpath /usr/lib/aarch64-linux-gnu meepgeom.lo GDSIIgeom.lo ../src/libmeep.la -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-mpi-default-1.7.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/meepgeom.o .libs/GDSIIgeom.o -L/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeep -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeepgeom.so.12 -o .libs/libmeepgeom.so.12.0.0 libtool: install: /usr/bin/install -c .libs/libmeepgeom.so.12.0.0T /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 libtool: install: (cd /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so.12 || { rm -f libmeepgeom.so.12 && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so.12; }; }) libtool: install: (cd /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeepgeom.so.12.0.0 libmeepgeom.so || { rm -f libmeepgeom.so && ln -s libmeepgeom.so.12.0.0 libmeepgeom.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeepgeom.lai /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.la libtool: install: /usr/bin/install -c .libs/libmeepgeom.a /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.a libtool: install: chmod 644 /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/libmeepgeom.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/include/meep' /usr/bin/install -c -m 644 meepgeom.hpp material_data.hpp '/build/meep-mpi-default-1.7.0/debian/tmp/usr/include/meep' make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/libmeepgeom' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/libmeepgeom' Making install in python make[3]: Entering directory '/build/meep-mpi-default-1.7.0/python' make install-am make[4]: Entering directory '/build/meep-mpi-default-1.7.0/python' make[5]: Entering directory '/build/meep-mpi-default-1.7.0/python' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' libtool: warning: relinking '_meep.la' libtool: install: (cd /build/meep-mpi-default-1.7.0/python; /bin/bash "/build/meep-mpi-default-1.7.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/meep-mpi-default-1.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 12:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python2.7/dist-packages/meep _meep_la-meep-python.lo ../src/libmeep.la ../libmeepgeom/libmeepgeom.la -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lcblas -lf77blas -latlas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-mpi-default-1.7.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/8/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeep -lmeepgeom -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lcblas -lf77blas -latlas -L/usr/lib/gcc/aarch64-linux-gnu/8 -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/8/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/8/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/8/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/8/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.12 -o .libs/_meep.so.12.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.12.0.0T /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 libtool: install: (cd /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so.12 || { rm -f _meep.so.12 && ln -s _meep.so.12.0.0 _meep.so.12; }; }) libtool: install: (cd /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep && { ln -s -f _meep.so.12.0.0 _meep.so || { rm -f _meep.so && ln -s _meep.so.12.0.0 _meep.so; }; }) libtool: install: /usr/bin/install -c .libs/_meep.lai /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.la libtool: install: /usr/bin/install -c .libs/_meep.a /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: install: chmod 644 /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: install: aarch64-linux-gnu-ranlib /build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep/_meep.a libtool: warning: remember to run 'libtool --finish /usr/lib/python2.7/dist-packages/meep' /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' /usr/bin/install -c -m 644 geom.py __init__.py source.py simulation.py materials.py '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/python2.7/dist-packages/meep' Byte-compiling python modules... geom.py__init__.pysource.pysimulation.pymaterials.py Byte-compiling python modules (optimized versions) ... geom.py__init__.pysource.pysimulation.pymaterials.py make install-data-hook make[6]: Entering directory '/build/meep-mpi-default-1.7.0/python' make[6]: Nothing to be done for 'install-data-hook'. make[6]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[5]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[4]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0/python' make[3]: Entering directory '/build/meep-mpi-default-1.7.0' make[4]: Entering directory '/build/meep-mpi-default-1.7.0' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 meep.pc '/build/meep-mpi-default-1.7.0/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[4]: Leaving directory '/build/meep-mpi-default-1.7.0' make[3]: Leaving directory '/build/meep-mpi-default-1.7.0' make[2]: Leaving directory '/build/meep-mpi-default-1.7.0' rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.pyc rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.pyo rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.a rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/*.la rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.pyc rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.pyo rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.a rm -f debian/tmp/usr/lib/python2.7/dist-packages/meep/mpb/*.la make[1]: Leaving directory '/build/meep-mpi-default-1.7.0' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 contains an unresolvable reference to symbol PyLong_AsDouble: it's probably a plugin dpkg-shlibdeps: warning: 111 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpi.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgsl.so.23 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libharminv.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libf77blas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libcblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against liblapack.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libfftw3.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libatlas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libhdf5_openmpi.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-meep-mpi-default/usr/lib/python2.7/dist-packages/meep/_meep.so.12.0.0 was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: symbol geom_fix_objects0 used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol geometry_lattice used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol make_sphere used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol ensure_periodicity used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol unit_vector3 used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol create_geom_box_tree0 used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol display_geom_box_tree used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol vector3_minus used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol material_of_unshifted_point_in_tree_inobject used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol geom_initialize used by debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 found in none of the libraries dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libcblas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libatlas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libf77blas.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libgfortran.so.5 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeep.so.12.0.0 debian/libmeep-mpi-default12/usr/lib/aarch64-linux-gnu/libmeepgeom.so.12.0.0 were not linked against libgslcblas.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libhdf5_openmpi.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libgc.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libatlas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libmpi.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libgfortran.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libf77blas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libcblas.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against liblapack.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libfftw3.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libharminv.so.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/meep-mpi-default/usr/bin/meep was not linked against libgsl.so.23 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'meep-mpi-default' in '../meep-mpi-default_1.7.0-3_arm64.deb'. dpkg-deb: building package 'meep-mpi-default-dbgsym' in '../meep-mpi-default-dbgsym_1.7.0-3_arm64.deb'. dpkg-deb: building package 'python-meep-mpi-default-dbgsym' in '../python-meep-mpi-default-dbgsym_1.7.0-3_arm64.deb'. dpkg-deb: building package 'libmeep-mpi-default-dev' in '../libmeep-mpi-default-dev_1.7.0-3_arm64.deb'. dpkg-deb: building package 'libmeep-mpi-default12' in '../libmeep-mpi-default12_1.7.0-3_arm64.deb'. dpkg-deb: building package 'libmeep-mpi-default12-dbgsym' in '../libmeep-mpi-default12-dbgsym_1.7.0-3_arm64.deb'. dpkg-deb: building package 'python-meep-mpi-default' in '../python-meep-mpi-default_1.7.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../meep-mpi-default_1.7.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8882 and its subdirectories I: Current time: Fri Aug 7 18:57:51 -12 2020 I: pbuilder-time-stamp: 1596869871 Sat Aug 8 06:57:55 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled13-arm64.debian.net. Sat Aug 8 06:57:55 UTC 2020 I: Preparing to do remote build '2' on codethink-sled13-arm64.debian.net. Sat Aug 8 07:28:20 UTC 2020 I: Deleting $TMPDIR on codethink-sled13-arm64.debian.net. Sat Aug 8 07:28:21 UTC 2020 I: meep-mpi-default_1.7.0-3_arm64.changes: Format: 1.8 Date: Mon, 04 Feb 2019 19:00:00 +0100 Source: meep-mpi-default Binary: libmeep-mpi-default-dev libmeep-mpi-default12 libmeep-mpi-default12-dbgsym meep-mpi-default meep-mpi-default-dbgsym python-meep-mpi-default python-meep-mpi-default-dbgsym Architecture: arm64 Version: 1.7.0-3 Distribution: sid Urgency: medium Maintainer: Thorsten Alteholz Changed-By: Thorsten Alteholz Description: libmeep-mpi-default-dev - development library for using parallel (OpenMPI) version of meep libmeep-mpi-default12 - library for using parallel (OpenMPI) version of meep meep-mpi-default - software package for FDTD simulation, parallel (OpenMPI) version python-meep-mpi-default - software package for FDTD simulation with Python Closes: 918858 Changes: meep-mpi-default (1.7.0-3) sid; urgency=medium . * debian/*postinst debian/*prerm: add correct package name (Closes: #918858) Thanks to Peter Green and Andreas Beckmann for their hints * debian/control: update description according to upstream wishes * debian/control: update homepage * debian/control: Standards Version to 4.3.0. (No changes needed). * debian/copyright: update Upstream-Source: Checksums-Sha1: 48ec7f5ba4b8dbb48235ee64e00cf0b1e643a9ee 322736 libmeep-mpi-default-dev_1.7.0-3_arm64.deb b32b79f2fcc6abf2e9d041129026e395ba88ec11 2253664 libmeep-mpi-default12-dbgsym_1.7.0-3_arm64.deb 6c22e539f601a65f123e423a14c68f9416be1203 290780 libmeep-mpi-default12_1.7.0-3_arm64.deb 81fd13e10c4d7b3ad204eb8515442672cbda1b5a 1244768 meep-mpi-default-dbgsym_1.7.0-3_arm64.deb 507556bda7a80f1c465303dae6a87a307f1e63c4 9622 meep-mpi-default_1.7.0-3_arm64.buildinfo 29d1bb55caf15b6a985a64b4805c17c6129f2c9f 189972 meep-mpi-default_1.7.0-3_arm64.deb 5286e6282a9fb4a2df4e55932b2a939f99b37647 2574808 python-meep-mpi-default-dbgsym_1.7.0-3_arm64.deb 58368de0f4c1f232038f86aa2313b311a137783e 396180 python-meep-mpi-default_1.7.0-3_arm64.deb Checksums-Sha256: 762657cc3db0eb85ec3c2369ae8baf676bd50c547e5f8919dc604a5b51308491 322736 libmeep-mpi-default-dev_1.7.0-3_arm64.deb d0bf350cbcc0bed5ee03c40e81ce994c8c116d3aab7c891a10f111e58d3472ab 2253664 libmeep-mpi-default12-dbgsym_1.7.0-3_arm64.deb 4d3d21ab9138b1a16f9dce77673c47c6636464362bf11c8e289c49649051d0b2 290780 libmeep-mpi-default12_1.7.0-3_arm64.deb e18f6892eb0480ee8c4fb2ff7e8a7fba911860493d52171ebef822f504821d9e 1244768 meep-mpi-default-dbgsym_1.7.0-3_arm64.deb 87fc9894b8a02c63f5581b721d15f777b7e3f5e73ec321b57023ee1214506a0f 9622 meep-mpi-default_1.7.0-3_arm64.buildinfo 1e72b15087ff10b69f5628a6fb05eb5e7cac4b25eab1a9a40e05f9d337110921 189972 meep-mpi-default_1.7.0-3_arm64.deb 63533cb01e3a580cbed60cad49193df2a6208ccd1689b65939ec5e3abb98ef56 2574808 python-meep-mpi-default-dbgsym_1.7.0-3_arm64.deb 62fce418d93c4541d6c251b6e82dc8ed3bdaeacbd4c4ba22b5c65f7181d7087c 396180 python-meep-mpi-default_1.7.0-3_arm64.deb Files: 1b53af3b804bc471c601a65c5cbb6677 322736 libdevel optional libmeep-mpi-default-dev_1.7.0-3_arm64.deb b52c0f1a2010f6179ef55ccf96e9e958 2253664 debug optional libmeep-mpi-default12-dbgsym_1.7.0-3_arm64.deb 859107c49b9cb8cc926396b4a5819dc0 290780 libs optional libmeep-mpi-default12_1.7.0-3_arm64.deb aa109e6007a203abf0e4ec4bd0a78498 1244768 debug optional meep-mpi-default-dbgsym_1.7.0-3_arm64.deb e887443a498cd8cce9d104efb4fa1d96 9622 science optional meep-mpi-default_1.7.0-3_arm64.buildinfo 49eed19c1e2a0480dc7269f77b5409fc 189972 science optional meep-mpi-default_1.7.0-3_arm64.deb 9281b95aea301938ba2dc27bc15c69b7 2574808 debug optional python-meep-mpi-default-dbgsym_1.7.0-3_arm64.deb 83ff741ef9fe9f6db58380d43a839dc3 396180 python optional python-meep-mpi-default_1.7.0-3_arm64.deb Sat Aug 8 07:28:22 UTC 2020 I: diffoscope 155 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.JyJecuhYoz/meep-mpi-default_1.7.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.JyJecuhYoz/meep-mpi-default_1.7.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.JyJecuhYoz/meep-mpi-default_1.7.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.JyJecuhYoz/b1/meep-mpi-default_1.7.0-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.JyJecuhYoz/b2/meep-mpi-default_1.7.0-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.430s) 0.430s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.178s) 0.178s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Aug 8 07:28:27 UTC 2020 I: diffoscope 155 found no differences in the changes files, and a .buildinfo file also exists. Sat Aug 8 07:28:27 UTC 2020 I: meep-mpi-default from buster built successfully and reproducibly on arm64. Sat Aug 8 07:28:29 UTC 2020 I: Submitting .buildinfo files to external archives: Sat Aug 8 07:28:29 UTC 2020 I: Submitting 12K b1/meep-mpi-default_1.7.0-3_arm64.buildinfo.asc Sat Aug 8 07:28:30 UTC 2020 I: Submitting 12K b2/meep-mpi-default_1.7.0-3_arm64.buildinfo.asc Sat Aug 8 07:28:32 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Aug 8 07:28:32 UTC 2020 I: Done submitting .buildinfo files. Sat Aug 8 07:28:32 UTC 2020 I: Removing signed meep-mpi-default_1.7.0-3_arm64.buildinfo.asc files: removed './b1/meep-mpi-default_1.7.0-3_arm64.buildinfo.asc' removed './b2/meep-mpi-default_1.7.0-3_arm64.buildinfo.asc'