Wed Aug 12 19:04:19 UTC 2020 I: starting to build hyphy/buster/arm64 on jenkins on '2020-08-12 19:03' Wed Aug 12 19:04:19 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/6803/console.log Wed Aug 12 19:04:19 UTC 2020 I: Downloading source for buster/hyphy=2.3.14+dfsg-1 --2020-08-12 19:04:19-- http://deb.debian.org/debian/pool/main/h/hyphy/hyphy_2.3.14+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2143 (2.1K) Saving to: ‘hyphy_2.3.14+dfsg-1.dsc’ 0K .. 100% 182M=0s 2020-08-12 19:04:19 (182 MB/s) - ‘hyphy_2.3.14+dfsg-1.dsc’ saved [2143/2143] Wed Aug 12 19:04:20 UTC 2020 I: hyphy_2.3.14+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hyphy Binary: hyphy-pt, hyphy-mpi, hyphy-common Architecture: any all Version: 2.3.14+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hyphy.org/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/hyphy Vcs-Git: https://salsa.debian.org/med-team/hyphy.git Build-Depends: debhelper (>= 11~), cmake (>= 3.0), mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev Package-List: hyphy-common deb science optional arch=all hyphy-mpi deb science optional arch=any hyphy-pt deb science optional arch=any Checksums-Sha1: 5b2e1dc386e724938d61e1977730b64c197155c5 4575048 hyphy_2.3.14+dfsg.orig.tar.xz 00e3974b8d0f98907bf7a6eb5748be978f11f4a8 8948 hyphy_2.3.14+dfsg-1.debian.tar.xz Checksums-Sha256: b034332dc99e858c9d7a17550c7644a438d1a6c2a1599abfcf176413d5c0f238 4575048 hyphy_2.3.14+dfsg.orig.tar.xz 1c3dcebf468122493041f93fddab562e3ddfec6f6b816900bcb169e1539e13f5 8948 hyphy_2.3.14+dfsg-1.debian.tar.xz Files: b0af2e2034a4564534f8fefd51383734 4575048 hyphy_2.3.14+dfsg.orig.tar.xz c4596d913561c904685ad595d0b4833d 8948 hyphy_2.3.14+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlurn/cRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFuug/+Kvw8W6TiZzil9kB94zxGFmkJawwZ2/Pu hc4GRbxClloqR0BLWWXv42xsdm6J2B52jFzuOOkepUz0Wp822bNAfJzfhhtJXf3P xPfhKajuft7C+L8OfesJrQp5nG+XSpRrck/WqZbj6hdzYC1vmKYmiC8CLKo6YEb/ 5LWDewoBlAL8xJbJ3hoXhNAE61QRfOU5DpkT+AdRzN6MidlYgN09xoauGhNZS0lz Ax7qvr095wvJDUIMZYfa9jgB8AukN1n0OoY2t57efZCpy5FHDYS3FpqjMmrnqLfb wCF/6Yic2u/pC51zRImNOV2L0GyMJJZKU08nQ6j3gYHYF2U1N9mWGOkYn5VwnRk1 0n1VmR+SH/2tyWpiuzv+zXMvmu2pX9zn25NSj+SPN4sLu+zPV4fpvjUZNJvcHfrW hRIwgAyv+DZ3Y9rcxy/9G73pXoi0hfnysupKLVy1ZC1UVTuuG+B1f1c+v153cMHg SMnXZG3//pXySE5gyTtPbgEiCo6eKw66nD2dOXEbQKQI5lTprn69nPuXUixVy/8R 3IxsemkIT9YJPPy5+9vVE1WBlmrUN2cLkuFRgtfGhMaOD2XYAAWq3TAr3Iq3j5nZ MWfHf1vAiGz07IMoljKKb3tGVbg93qedYTK3zjoh7ZTjyTIZhow4bEzQdA2Ysogw tTEkbZFW054= =pUoA -----END PGP SIGNATURE----- Wed Aug 12 19:04:20 UTC 2020 I: Checking whether the package is not for us Wed Aug 12 19:04:20 UTC 2020 I: Starting 1st build on remote node codethink-sled9-arm64.debian.net. Wed Aug 12 19:04:20 UTC 2020 I: Preparing to do remote build '1' on codethink-sled9-arm64.debian.net. Wed Aug 12 19:09:38 UTC 2020 I: Deleting $TMPDIR on codethink-sled9-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 14 13:27:33 -12 2021 I: pbuilder-time-stamp: 1631669253 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hyphy_2.3.14+dfsg-1.dsc] I: copying [./hyphy_2.3.14+dfsg.orig.tar.xz] I: copying [./hyphy_2.3.14+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Sep 26 03:04:23 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hyphy_2.3.14+dfsg-1.dsc dpkg-source: info: extracting hyphy in hyphy-2.3.14+dfsg dpkg-source: info: unpacking hyphy_2.3.14+dfsg.orig.tar.xz dpkg-source: info: unpacking hyphy_2.3.14+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_sqlite.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying drop_profiling_option.patch dpkg-source: info: applying remove_unneeded_test.patch dpkg-source: info: applying msse_option_only_if_available.patch dpkg-source: info: applying remove_arch_specific_flags.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2295/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2295' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.XtZFaTtM3K/pbuilderrc_xxmc --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.XtZFaTtM3K/b1 --logfile b1/build.log hyphy_2.3.14+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled9-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 13 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2295/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake (>= 3.0), mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.0); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsqlite3-dev{a} libssh2-1{a} libssl-dev{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After unpacking 146 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libprocps7 arm64 2:3.3.15-2 [58.0 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 procps arm64 2:3.3.15-2 [245 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 openssh-client arm64 1:7.9p1-10+deb10u2 [757 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 cmake-data all 3.13.4-1 [1476 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libarchive13 arm64 3.3.3-4+deb10u1 [291 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libcurl4 arm64 7.64.0-4+deb10u1 [312 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libjsoncpp1 arm64 1.7.4-3 [71.0 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 librhash0 arm64 1.3.8-1 [121 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libuv1 arm64 1.24.1-1 [105 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 cmake arm64 3.13.4-1 [3046 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libnl-3-200 arm64 3.4.0-1 [54.9 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libnl-route-3-200 arm64 3.4.0-1 [134 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libibverbs1 arm64 22.1-1 [47.8 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 ibverbs-providers arm64 22.1-1 [174 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libcurl3-gnutls arm64 7.64.0-4+deb10u1 [310 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libcurl4-gnutls-dev arm64 7.64.0-4+deb10u1 [408 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libevent-2.1-6 arm64 2.1.8-stable-4 [150 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libevent-core-2.1-6 arm64 2.1.8-stable-4 [112 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libevent-pthreads-2.1-6 arm64 2.1.8-stable-4 [47.7 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libnuma1 arm64 2.0.12-1 [25.6 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libhwloc5 arm64 1.11.12-3 [97.9 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libnuma-dev arm64 2.0.12-1 [40.0 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libltdl-dev arm64 2.4.6-9 [162 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libhwloc-dev arm64 1.11.12-3 [165 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libpciaccess0 arm64 0.14-1 [51.0 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 ocl-icd-libopencl1 arm64 2.2.12-2 [37.4 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libhwloc-plugins arm64 1.11.12-3 [16.9 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libnl-3-dev arm64 3.4.0-1 [98.2 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libnl-route-3-dev arm64 3.4.0-1 [162 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libibverbs-dev arm64 22.1-1 [356 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libpmix2 arm64 3.1.2-3 [455 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libopenmpi3 arm64 3.1.3-11 [1996 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 openmpi-common all 3.1.3-11 [165 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 openmpi-bin arm64 3.1.3-11 [199 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libopenmpi-dev arm64 3.1.3-11 [974 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libsqlite3-dev arm64 3.27.2-3 [745 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libssl-dev arm64 1.1.1d-0+deb10u3 [1685 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 mpi-default-dev arm64 1.13 [5476 B] Fetched 37.7 MB in 3s (12.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../06-libncurses6_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:arm64. Preparing to unpack .../07-libprocps7_2%3a3.3.15-2_arm64.deb ... Unpacking libprocps7:arm64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../08-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../09-procps_2%3a3.3.15-2_arm64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../10-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../11-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../12-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../13-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../14-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../15-libedit2_3.1-20181209-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../16-libkeyutils1_1.6-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6-6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../17-libkrb5support0_1.17-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../18-libk5crypto3_1.17-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-3) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../19-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../20-libkrb5-3_1.17-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../21-libgssapi-krb5-2_1.17-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.17-3) ... Selecting previously unselected package openssh-client. Preparing to unpack .../22-openssh-client_1%3a7.9p1-10+deb10u2_arm64.deb ... Unpacking openssh-client (1:7.9p1-10+deb10u2) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../23-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../24-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../25-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../26-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../27-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../28-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../29-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libicu63:arm64. Preparing to unpack .../30-libicu63_63.1-6+deb10u1_arm64.deb ... Unpacking libicu63:arm64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../31-libxml2_2.9.4+dfsg1-7+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../32-libarchive13_3.3.3-4+deb10u1_arm64.deb ... Unpacking libarchive13:arm64 (3.3.3-4+deb10u1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../33-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../34-libsasl2-2_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../35-libldap-common_2.4.47+dfsg-3+deb10u2_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../36-libldap-2.4-2_2.4.47+dfsg-3+deb10u2_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../37-libnghttp2-14_1.36.0-2+deb10u1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../38-libpsl5_0.20.2-2_arm64.deb ... Unpacking libpsl5:arm64 (0.20.2-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../40-libssh2-1_1.8.0-2.1_arm64.deb ... Unpacking libssh2-1:arm64 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../41-libcurl4_7.64.0-4+deb10u1_arm64.deb ... Unpacking libcurl4:arm64 (7.64.0-4+deb10u1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../42-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libjsoncpp1:arm64. Preparing to unpack .../43-libjsoncpp1_1.7.4-3_arm64.deb ... Unpacking libjsoncpp1:arm64 (1.7.4-3) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../44-librhash0_1.3.8-1_arm64.deb ... Unpacking librhash0:arm64 (1.3.8-1) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../45-libuv1_1.24.1-1_arm64.deb ... Unpacking libuv1:arm64 (1.24.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../46-cmake_3.13.4-1_arm64.deb ... Unpacking cmake (3.13.4-1) ... Selecting previously unselected package libtool. Preparing to unpack .../47-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../48-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../49-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../50-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../51-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../52-libelf1_0.176-1.1_arm64.deb ... Unpacking libelf1:arm64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../53-dwz_0.12-3_arm64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../54-libglib2.0-0_2.58.3-2+deb10u2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../55-libcroco3_0.6.12-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../56-gettext_0.19.8.1-9_arm64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../57-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../58-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../59-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libnl-3-200:arm64. Preparing to unpack .../60-libnl-3-200_3.4.0-1_arm64.deb ... Unpacking libnl-3-200:arm64 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-200:arm64. Preparing to unpack .../61-libnl-route-3-200_3.4.0-1_arm64.deb ... Unpacking libnl-route-3-200:arm64 (3.4.0-1) ... Selecting previously unselected package libibverbs1:arm64. Preparing to unpack .../62-libibverbs1_22.1-1_arm64.deb ... Unpacking libibverbs1:arm64 (22.1-1) ... Selecting previously unselected package ibverbs-providers:arm64. Preparing to unpack .../63-ibverbs-providers_22.1-1_arm64.deb ... Unpacking ibverbs-providers:arm64 (22.1-1) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../64-libcurl3-gnutls_7.64.0-4+deb10u1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Selecting previously unselected package libcurl4-gnutls-dev:arm64. Preparing to unpack .../65-libcurl4-gnutls-dev_7.64.0-4+deb10u1_arm64.deb ... Unpacking libcurl4-gnutls-dev:arm64 (7.64.0-4+deb10u1) ... Selecting previously unselected package libevent-2.1-6:arm64. Preparing to unpack .../66-libevent-2.1-6_2.1.8-stable-4_arm64.deb ... Unpacking libevent-2.1-6:arm64 (2.1.8-stable-4) ... Selecting previously unselected package libevent-core-2.1-6:arm64. Preparing to unpack .../67-libevent-core-2.1-6_2.1.8-stable-4_arm64.deb ... Unpacking libevent-core-2.1-6:arm64 (2.1.8-stable-4) ... Selecting previously unselected package libevent-pthreads-2.1-6:arm64. Preparing to unpack .../68-libevent-pthreads-2.1-6_2.1.8-stable-4_arm64.deb ... Unpacking libevent-pthreads-2.1-6:arm64 (2.1.8-stable-4) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../69-libgfortran5_8.3.0-6_arm64.deb ... Unpacking libgfortran5:arm64 (8.3.0-6) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../70-libltdl7_2.4.6-9_arm64.deb ... Unpacking libltdl7:arm64 (2.4.6-9) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../71-libnuma1_2.0.12-1_arm64.deb ... Unpacking libnuma1:arm64 (2.0.12-1) ... Selecting previously unselected package libhwloc5:arm64. Preparing to unpack .../72-libhwloc5_1.11.12-3_arm64.deb ... Unpacking libhwloc5:arm64 (1.11.12-3) ... Selecting previously unselected package libnuma-dev:arm64. Preparing to unpack .../73-libnuma-dev_2.0.12-1_arm64.deb ... Unpacking libnuma-dev:arm64 (2.0.12-1) ... Selecting previously unselected package libltdl-dev:arm64. Preparing to unpack .../74-libltdl-dev_2.4.6-9_arm64.deb ... Unpacking libltdl-dev:arm64 (2.4.6-9) ... Selecting previously unselected package libhwloc-dev:arm64. Preparing to unpack .../75-libhwloc-dev_1.11.12-3_arm64.deb ... Unpacking libhwloc-dev:arm64 (1.11.12-3) ... Selecting previously unselected package libpciaccess0:arm64. Preparing to unpack .../76-libpciaccess0_0.14-1_arm64.deb ... Unpacking libpciaccess0:arm64 (0.14-1) ... Selecting previously unselected package ocl-icd-libopencl1:arm64. Preparing to unpack .../77-ocl-icd-libopencl1_2.2.12-2_arm64.deb ... Unpacking ocl-icd-libopencl1:arm64 (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:arm64. Preparing to unpack .../78-libhwloc-plugins_1.11.12-3_arm64.deb ... Unpacking libhwloc-plugins:arm64 (1.11.12-3) ... Selecting previously unselected package libnl-3-dev:arm64. Preparing to unpack .../79-libnl-3-dev_3.4.0-1_arm64.deb ... Unpacking libnl-3-dev:arm64 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:arm64. Preparing to unpack .../80-libnl-route-3-dev_3.4.0-1_arm64.deb ... Unpacking libnl-route-3-dev:arm64 (3.4.0-1) ... Selecting previously unselected package libibverbs-dev:arm64. Preparing to unpack .../81-libibverbs-dev_22.1-1_arm64.deb ... Unpacking libibverbs-dev:arm64 (22.1-1) ... Selecting previously unselected package libpmix2:arm64. Preparing to unpack .../82-libpmix2_3.1.2-3_arm64.deb ... Unpacking libpmix2:arm64 (3.1.2-3) ... Selecting previously unselected package libopenmpi3:arm64. Preparing to unpack .../83-libopenmpi3_3.1.3-11_arm64.deb ... Unpacking libopenmpi3:arm64 (3.1.3-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../84-openmpi-common_3.1.3-11_all.deb ... 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Setting up lsb-base (10.2019051400) ... Setting up libpciaccess0:arm64 (0.14-1) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libprocps7:arm64 (2:3.3.15-2) ... Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:arm64 (1.24.1-1) ... Setting up libsqlite3-dev:arm64 (3.27.2-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libssl-dev:arm64 (1.1.1d-0+deb10u3) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libltdl7:arm64 (2.4.6-9) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libevent-core-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up libevent-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libnuma1:arm64 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:arm64 (2.2.12-2) ... Setting up librhash0:arm64 (1.3.8-1) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libnl-3-200:arm64 (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:arm64 (2.1.8-stable-4) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:arm64 (3.3.3-4+deb10u1) ... Setting up libhwloc5:arm64 (1.11.12-3) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:arm64 (1.11.12-3) ... Setting up libnuma-dev:arm64 (2.0.12-1) ... Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:arm64 (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:arm64 (7.64.0-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:arm64 (22.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:arm64 (3.1.2-3) ... Setting up ibverbs-providers:arm64 (22.1-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libopenmpi3:arm64 (3.1.3-11) ... Setting up libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Setting up libcurl4-gnutls-dev:arm64 (7.64.0-4+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:arm64 (3.4.0-1) ... Setting up libltdl-dev:arm64 (2.4.6-9) ... Setting up cmake (3.13.4-1) ... Setting up libhwloc-dev:arm64 (1.11.12-3) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:arm64 (22.1-1) ... Setting up libopenmpi-dev:arm64 (3.1.3-11) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/hyphy-2.3.14+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.3.14+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' dh_auto_clean make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build dh build --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' dh_auto_configure -- -DINSTALL_PREFIX=/usr cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DINSTALL_PREFIX=/usr .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_AVX_EXTENSIONS -- Performing Test HAVE_AVX_EXTENSIONS - Failed -- Performing Test HAVE_SSE3_EXTENSIONS -- Performing Test HAVE_SSE3_EXTENSIONS - Failed Set compiler flags to -fsigned-char -O3 -- Looking for amd_log in libamdlibm.so -- Looking for amd_log in libamdlibm.so - not found -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found CURL: /usr/lib/aarch64-linux-gnu/libcurl.so (found version "7.64.0") -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found SQLITE3: /usr/lib/aarch64-linux-gnu/libsqlite3.so -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Looking for pthread.h -- Looking for pthread.h - not found -- Could NOT find Threads (missing: Threads_FOUND) -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - not found -- Looking for CL_VERSION_2_1 -- Looking for CL_VERSION_2_1 - not found -- Looking for CL_VERSION_2_0 -- Looking for CL_VERSION_2_0 - not found -- Looking for CL_VERSION_1_2 -- Looking for CL_VERSION_1_2 - not found -- Looking for CL_VERSION_1_1 -- Looking for CL_VERSION_1_1 - not found -- Looking for CL_VERSION_1_0 -- Looking for CL_VERSION_1_0 - not found -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) -- Found MPI_C: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR INSTALL_PREFIX -- Build files have been written to: /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' # no idea about the purpose of the dynamic library - executables are not simply linked against it dh_auto_build -- MP MPI GTEST # LIB cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" MP MPI GTEST make[2]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.3.14+dfsg -B/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.3.14+dfsg -B/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles 24 make -f CMakeFiles/Makefile2 CMakeFiles/MP.dir/all make[4]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/depend make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' cd /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/HYPHYMP.dir/DependInfo.cmake --color= Scanning dependencies of target HYPHYMP make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/build make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o [ 4%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o [ 4%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/_hyExecutionContext.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistx.cpp [ 4%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o [ 8%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o [ 8%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistxl_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/alignment.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllist.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistxl.cpp [ 12%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o 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-I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/matrix.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/matrix.cpp [ 54%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/parser.cpp [ 58%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/parser2.cpp [ 62%] Building CXX object 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/build/hyphy-2.3.14+dfsg/src/core/string_file_wrapper.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/strings.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/time_difference.cpp.o 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-D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/trie.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/trie.cpp [ 79%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/variable.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/variable.cpp [ 83%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/variablecontainer.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/variablecontainer.cpp [ 83%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/bayesgraph.cpp [ 87%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/bayesgraph2.cpp [ 87%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/bgm.cpp [ 91%] Building CXX 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-D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/scfg.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/scfg.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o -c /build/hyphy-2.3.14+dfsg/src/utils/hyphyunixutils.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o -c /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp [100%] Linking CXX executable HYPHYMP /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMP.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -fopenmp CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYMP.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYMP.dir/src/core/calcnode2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/category.cpp.o CMakeFiles/HYPHYMP.dir/src/core/constant.cpp.o CMakeFiles/HYPHYMP.dir/src/core/error.cpp.o CMakeFiles/HYPHYMP.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYMP.dir/src/core/formula.cpp.o CMakeFiles/HYPHYMP.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYMP.dir/src/core/global_object_lists.cpp.o CMakeFiles/HYPHYMP.dir/src/core/hbl_env.cpp.o CMakeFiles/HYPHYMP.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYMP.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYMP.dir/src/core/list.cpp.o CMakeFiles/HYPHYMP.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMP.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMP.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMP.dir/src/core/regex.cpp.o CMakeFiles/HYPHYMP.dir/src/core/sequence.cpp.o CMakeFiles/HYPHYMP.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMP.dir/src/core/site.cpp.o CMakeFiles/HYPHYMP.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMP.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMP.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYMP.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMP.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMP.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMP.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o -o HYPHYMP -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [100%] Built target HYPHYMP make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' cd /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/MP.dir/DependInfo.cmake --color= Scanning dependencies of target MP make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/build make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/MP.dir/build'. make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [100%] Built target MP make[4]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/Makefile2 MPI make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.3.14+dfsg -B/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles 24 make -f CMakeFiles/Makefile2 CMakeFiles/MPI.dir/all make[4]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/depend make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' cd /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake --color= Scanning dependencies of target HYPHYMPI make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/build make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o [ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o [ 0%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o [ 4%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o /usr/bin/c++ 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-I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistx.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistxl_iterator.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/baseobj.cpp [ 16%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlan2.cpp [ 16%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlanhelpers.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlanruntime.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong 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-D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/list.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/mathobj.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/matrix.cpp [ 54%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat 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CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/operation.cpp [ 58%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/parser.cpp [ 58%] Building CXX object 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CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI -Wl,-rpath,/usr/lib/aarch64-linux-gnu/openmpi/lib: -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [100%] Built target HYPHYMPI make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' cd /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/MPI.dir/DependInfo.cmake --color= Scanning dependencies of target MPI make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/MPI.dir/build.make 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'/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o -c 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/build/hyphy-2.3.14+dfsg/src/core/batchlan2.cpp [ 18%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/batchlanhelpers.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanhelpers.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlanhelpers.cpp [ 22%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/batchlanruntime.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanruntime.cpp.o -c 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CMakeFiles/HYPHYGTEST.dir/src/core/calcnode2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/calcnode2.cpp [ 25%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/category.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/category.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/category.cpp [ 29%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/constant.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/constant.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/constant.cpp [ 29%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/error.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/error.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/error.cpp [ 33%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/fisher_exact.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/fisher_exact.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/fisher_exact.cpp [ 33%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/formula.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/formula.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/formula.cpp [ 37%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/fstring.cpp [ 37%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/global_object_lists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/global_object_lists.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/global_object_lists.cpp [ 37%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/hbl_env.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/hbl_env.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/hbl_env.cpp [ 40%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/likefunc.cpp [ 40%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/likefunc2.cpp [ 44%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/likefuncocl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/likefuncocl.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/likefuncocl.cpp [ 44%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/list.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/list.cpp [ 48%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/mathobj.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/mathobj.cpp [ 48%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/matrix.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/matrix.cpp [ 51%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/nexus.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/nexus.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/nexus.cpp [ 51%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/operation.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/operation.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/operation.cpp [ 55%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/parser.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/parser.cpp [ 55%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/parser2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/parser2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/parser2.cpp [ 59%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/polynoml.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/polynoml.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/polynoml.cpp [ 59%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/regex.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/regex.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/regex.cpp [ 62%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/sequence.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/sequence.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/sequence.cpp [ 62%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/simplelist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/simplelist.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/simplelist.cpp [ 66%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/site.cpp [ 66%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/stack.cpp [ 66%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/string_file_wrapper.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/string_file_wrapper.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/string_file_wrapper.cpp [ 70%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/strings.cpp [ 70%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/time_difference.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/time_difference.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/time_difference.cpp [ 74%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/trie.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/trie.cpp [ 74%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/variable.cpp [ 77%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/variablecontainer.cpp [ 77%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/bayesgraph.cpp [ 81%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/bayesgraph2.cpp [ 81%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/bgm.cpp [ 85%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/new/bgm2.cpp [ 85%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o /usr/bin/c++ 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-D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o -c /build/hyphy-2.3.14+dfsg/src/utils/hyphyunixutils.cpp [ 88%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_avllists.cpp [ 92%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_list.cpp [ 92%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_simplelists.cpp [ 96%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_strings.cpp [ 96%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/usr/lib/aarch64-linux-gnu/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o -c /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp: In function '_String getLibraryPath()': /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:209:12: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,_HYPHY_MAX_PATH_LENGTH); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp: In function 'long int DisplayListOfChoices()': /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:407:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ~~~~~~^~~~~~~~~~~~~~~~~~~ /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:408:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ~~~~~~^~~~~~~~~~~~~~~~~~~ /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:451:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ~~~~~~^~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable HYPHYGTEST /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYGTEST.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. 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CMakeFiles/HYPHYGTEST.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/trie.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o -o HYPHYGTEST -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 contrib/gtest-1.7.0/libgtest.a make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [100%] Built target HYPHYGTEST make -f CMakeFiles/GTEST.dir/build.make CMakeFiles/GTEST.dir/depend make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' cd /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/GTEST.dir/DependInfo.cmake --color= Scanning dependencies of target GTEST make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/GTEST.dir/build.make CMakeFiles/GTEST.dir/build make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/GTEST.dir/build'. make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [100%] Built target GTEST make[4]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[2]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' find obj-* -name HYPHYGTEST -exec \{\} \; [==========] Running 180 tests from 6 test cases. [----------] Global test environment set-up. [----------] 18 tests from AVLListTest [ RUN ] AVLListTest.FindTest [ OK ] AVLListTest.FindTest (0 ms) [ RUN ] AVLListTest.FindLongTest [ OK ] AVLListTest.FindLongTest (0 ms) [ RUN ] AVLListTest.FindBestTest [ OK ] AVLListTest.FindBestTest (0 ms) [ RUN ] AVLListTest.NextTest [ OK ] AVLListTest.NextTest (0 ms) [ RUN ] AVLListTest.PrevTest [ OK ] AVLListTest.PrevTest (0 ms) [ RUN ] AVLListTest.FirstTest [ OK ] AVLListTest.FirstTest (0 ms) [ RUN ] AVLListTest.LastTest [ OK ] AVLListTest.LastTest (1 ms) [ RUN ] AVLListTest.GetByIndexTest [ OK ] AVLListTest.GetByIndexTest (0 ms) [ RUN ] AVLListTest.ReorderListTest [ OK ] AVLListTest.ReorderListTest (0 ms) [ RUN ] AVLListTest.TraverserTest [ OK ] AVLListTest.TraverserTest (0 ms) [ RUN ] AVLListTest.toStrTest [ OK ] AVLListTest.toStrTest (0 ms) [ RUN ] AVLListTest.RetrieveTest [ OK ] AVLListTest.RetrieveTest (0 ms) [ RUN ] AVLListTest.ClearTest [ OK ] AVLListTest.ClearTest (0 ms) [ RUN ] AVLListTest.InsertTest [ OK ] AVLListTest.InsertTest (0 ms) [ RUN ] AVLListTest.InsertDataTest [ OK ] AVLListTest.InsertDataTest (0 ms) [ RUN ] AVLListTest.HasDataTest [ OK ] AVLListTest.HasDataTest (0 ms) [ RUN ] AVLListTest.DeleteTest [ OK ] AVLListTest.DeleteTest (0 ms) [ RUN ] AVLListTest.countitemsTest [ OK ] AVLListTest.countitemsTest (0 ms) [----------] 18 tests from AVLListTest (1 ms total) [----------] 4 tests from AVLListXLTest [ RUN ] AVLListXLTest.ClearTest [ OK ] AVLListXLTest.ClearTest (0 ms) [ RUN ] AVLListXLTest.InsertDataTest [ OK ] AVLListXLTest.InsertDataTest (0 ms) [ RUN ] AVLListXLTest.DeleteXtraTest [ OK ] AVLListXLTest.DeleteXtraTest (0 ms) [ RUN ] AVLListXLTest.SetAndGetXtraTest [ OK ] AVLListXLTest.SetAndGetXtraTest (0 ms) [----------] 4 tests from AVLListXLTest (0 ms total) [----------] 4 tests from AVLListXTest [ RUN ] AVLListXTest.InsertDataTest [ OK ] AVLListXTest.InsertDataTest (0 ms) [ RUN ] AVLListXTest.DeleteXtraTest [ OK ] AVLListXTest.DeleteXtraTest (0 ms) [ RUN ] AVLListXTest.PopulateFromListTest [ OK ] AVLListXTest.PopulateFromListTest (0 ms) [ RUN ] AVLListXTest.SetAndGetXtraTest [ OK ] AVLListXTest.SetAndGetXtraTest (0 ms) [----------] 4 tests from AVLListXTest (0 ms total) [----------] 33 tests from ListTest [ RUN ] ListTest._NothingListTest [ OK ] ListTest._NothingListTest (0 ms) [ RUN ] ListTest._LengthConstructorListTest [ OK ] ListTest._LengthConstructorListTest (0 ms) [ RUN ] ListTest._StackCopyConstructorListTest [ OK ] ListTest._StackCopyConstructorListTest (0 ms) [ RUN ] ListTest._SubStrConstructorListTest [ OK ] ListTest._SubStrConstructorListTest (0 ms) [ RUN ] ListTest._DataConstructorListTest [ OK ] ListTest._DataConstructorListTest (0 ms) [ RUN ] ListTest.paranthesisTest [ OK ] ListTest.paranthesisTest (0 ms) [ RUN ] ListTest.EqualOpTest [ OK ] ListTest.EqualOpTest (0 ms) [ RUN ] ListTest.EqualTest [ OK ] ListTest.EqualTest (0 ms) [ RUN ] ListTest.AmpersandOpTest [ OK ] ListTest.AmpersandOpTest (0 ms) [ RUN ] ListTest.Ampersand2OpTest [ OK ] ListTest.Ampersand2OpTest (0 ms) [ RUN ] ListTest.DoubleAmpersandOpTest [ OK ] ListTest.DoubleAmpersandOpTest (0 ms) [ RUN ] ListTest.DoubleAmpersand2OpTest [ OK ] ListTest.DoubleAmpersand2OpTest (0 ms) [ RUN ] ListTest.DoubleLessOpTest [ OK ] ListTest.DoubleLessOpTest (0 ms) [ RUN ] ListTest.DoubleLess2OpTest [ OK ] ListTest.DoubleLess2OpTest (0 ms) [ RUN ] ListTest.AppendNewInstanceTest [ OK ] ListTest.AppendNewInstanceTest (0 ms) [ RUN ] ListTest.PlaceTest [ OK ] ListTest.PlaceTest (0 ms) [ RUN ] ListTest.InsertElementTest [ OK ] ListTest.InsertElementTest (0 ms) [ RUN ] ListTest.getStrTest [ OK ] ListTest.getStrTest (0 ms) [ RUN ] ListTest.makeDynamicTest [ OK ] ListTest.makeDynamicTest (0 ms) [ RUN ] ListTest.toFileStrTest [ OK ] ListTest.toFileStrTest (0 ms) [ RUN ] ListTest.bumpNInstTest [ OK ] ListTest.bumpNInstTest (0 ms) [ RUN ] ListTest.FindStringTest [ OK ] ListTest.FindStringTest (0 ms) [ RUN ] ListTest.JoinTest [ OK ] ListTest.JoinTest (0 ms) [ RUN ] ListTest.BinaryFindTest [ OK ] ListTest.BinaryFindTest (0 ms) [ RUN ] ListTest.BinaryInsertTest [ OK ] ListTest.BinaryInsertTest (0 ms) [ RUN ] ListTest.CompareTest [ OK ] ListTest.CompareTest (0 ms) [ RUN ] ListTest.Compare2Test [ OK ] ListTest.Compare2Test (0 ms) [ RUN ] ListTest.FreeUpMemoryTest [ OK ] ListTest.FreeUpMemoryTest (0 ms) [ RUN ] ListTest.ClearTest [ OK ] ListTest.ClearTest (0 ms) [ RUN ] ListTest.DeleteTest [ OK ] ListTest.DeleteTest (0 ms) [ RUN ] ListTest.DeleteListTest [ OK ] ListTest.DeleteListTest (0 ms) [ RUN ] ListTest.ReplaceTest [ OK ] ListTest.ReplaceTest (0 ms) [ RUN ] ListTest.IntersectTest [ OK ] ListTest.IntersectTest (0 ms) [----------] 33 tests from ListTest (0 ms total) [----------] 44 tests from SimpleListTest [ RUN ] SimpleListTest._StackCopyConstructorListTest [ OK ] SimpleListTest._StackCopyConstructorListTest (0 ms) [ RUN ] SimpleListTest._PopulateTest [ OK ] SimpleListTest._PopulateTest (0 ms) [ RUN ] SimpleListTest._BracketOpTest [ OK ] SimpleListTest._BracketOpTest (0 ms) [ RUN ] SimpleListTest._ParenthOpTest [ OK ] SimpleListTest._ParenthOpTest (0 ms) [ RUN ] SimpleListTest._EqualOpTest [ OK ] SimpleListTest._EqualOpTest (0 ms) [ RUN ] SimpleListTest._DoubleLessOpTest [ OK ] SimpleListTest._DoubleLessOpTest (0 ms) [ RUN ] SimpleListTest._OffsetTest [ OK ] SimpleListTest._OffsetTest (0 ms) [ RUN ] SimpleListTest._ElementTest [ OK ] SimpleListTest._ElementTest (0 ms) [ RUN ] SimpleListTest._PopTest [ OK ] SimpleListTest._PopTest (0 ms) [ RUN ] SimpleListTest._countitemsTest [ OK ] SimpleListTest._countitemsTest (0 ms) [ RUN ] SimpleListTest._EqualTest [ OK ] SimpleListTest._EqualTest (0 ms) [ RUN ] SimpleListTest._MergeTest [ OK ] SimpleListTest._MergeTest (0 ms) [ RUN ] SimpleListTest.DoubleGreaterOpTest [ OK ] SimpleListTest.DoubleGreaterOpTest (0 ms) [ RUN ] SimpleListTest._ListToPartitionStringTest [ OK ] SimpleListTest._ListToPartitionStringTest (1 ms) [ RUN ] SimpleListTest._RequestSpaceTest [ OK ] SimpleListTest._RequestSpaceTest (0 ms) [ RUN ] SimpleListTest._toStrTest [ OK ] SimpleListTest._toStrTest (0 ms) [ RUN ] SimpleListTest._makeDynamicTest [ OK ] SimpleListTest._makeDynamicTest (0 ms) [ RUN ] SimpleListTest._MinTest [ OK ] SimpleListTest._MinTest (0 ms) [ RUN ] SimpleListTest._MaxTest [ OK ] SimpleListTest._MaxTest (0 ms) [ RUN ] SimpleListTest._ClearFormulasInListTest [ OK ] SimpleListTest._ClearFormulasInListTest (0 ms) [ RUN ] SimpleListTest._CountingSortTest [ OK ] SimpleListTest._CountingSortTest (0 ms) [ RUN ] SimpleListTest._BinaryInsertTest [ OK ] SimpleListTest._BinaryInsertTest (0 ms) [ RUN ] SimpleListTest._FindTest [ OK ] SimpleListTest._FindTest (0 ms) [ RUN ] SimpleListTest._FindSteppingTest [ OK ] SimpleListTest._FindSteppingTest (0 ms) [ RUN ] SimpleListTest._FilterRangeTest [ OK ] SimpleListTest._FilterRangeTest (0 ms) [ RUN ] SimpleListTest._BinaryFindTest [ OK ] SimpleListTest._BinaryFindTest (0 ms) [ RUN ] SimpleListTest._SortTest [ OK ] SimpleListTest._SortTest (0 ms) [ RUN ] SimpleListTest._CompareTest [ OK ] SimpleListTest._CompareTest (0 ms) [ RUN ] SimpleListTest._ClearTest [ OK ] SimpleListTest._ClearTest (0 ms) [ RUN ] SimpleListTest._DeleteTest [ OK ] SimpleListTest._DeleteTest (0 ms) [ RUN ] SimpleListTest._TrimMemoryTest [ OK ] SimpleListTest._TrimMemoryTest (0 ms) [ RUN ] SimpleListTest._DeleteDuplicatesTest [ OK ] SimpleListTest._DeleteDuplicatesTest (0 ms) [ RUN ] SimpleListTest._DeleteListTest [ OK ] SimpleListTest._DeleteListTest (0 ms) [ RUN ] SimpleListTest._DisplaceTest [ OK ] SimpleListTest._DisplaceTest (0 ms) [ RUN ] SimpleListTest._PermuteWithReplacementTest [ OK ] SimpleListTest._PermuteWithReplacementTest (0 ms) [ RUN ] SimpleListTest._PermuteTest [ OK ] SimpleListTest._PermuteTest (0 ms) [ RUN ] SimpleListTest._NChooseKTest [ OK ] SimpleListTest._NChooseKTest (0 ms) [ RUN ] SimpleListTest._SwapTest [ OK ] SimpleListTest._SwapTest (0 ms) [ RUN ] SimpleListTest._FlipTest [ OK ] SimpleListTest._FlipTest (0 ms) [ RUN ] SimpleListTest._UnionTest [ OK ] SimpleListTest._UnionTest (0 ms) [ RUN ] SimpleListTest._IntersectTest [ OK ] SimpleListTest._IntersectTest (0 ms) [ RUN ] SimpleListTest._CountCommonElementsTest [ OK ] SimpleListTest._CountCommonElementsTest (0 ms) [ RUN ] SimpleListTest._XORTest [ OK ] SimpleListTest._XORTest (0 ms) [ RUN ] SimpleListTest._SubtractTest [ OK ] SimpleListTest._SubtractTest (0 ms) [----------] 44 tests from SimpleListTest (1 ms total) [----------] 77 tests from StringTest [ RUN ] StringTest.InitializeTest [ OK ] StringTest.InitializeTest (0 ms) [ RUN ] StringTest.DuplicateTest [ OK ] StringTest.DuplicateTest (0 ms) [ RUN ] StringTest.DuplicateErasingTest [ OK ] StringTest.DuplicateErasingTest (0 ms) [ RUN ] StringTest.makeDynamicTest [ OK ] StringTest.makeDynamicTest (0 ms) [ RUN ] StringTest.getCharTest [ OK ] StringTest.getCharTest (0 ms) [ RUN ] StringTest.setCharTest [ OK ] StringTest.setCharTest (0 ms) [ RUN ] StringTest.CopyDynamicStringTest [ OK ] StringTest.CopyDynamicStringTest (0 ms) [ RUN ] StringTest.LengthTest [ OK ] StringTest.LengthTest (0 ms) [ RUN ] StringTest.InsertTest [ OK ] StringTest.InsertTest (0 ms) [ RUN ] StringTest.DeleteTest [ OK ] StringTest.DeleteTest (0 ms) [ RUN ] StringTest.AppendNewInstanceTest [ OK ] StringTest.AppendNewInstanceTest (0 ms) [ RUN ] StringTest.EscapeAndAppendTest [ OK ] StringTest.EscapeAndAppendTest (0 ms) [ RUN ] StringTest.EscapeAndAppend2Test [ OK ] StringTest.EscapeAndAppend2Test (0 ms) [ RUN ] StringTest.FinalizeTest [ OK ] StringTest.FinalizeTest (0 ms) [ RUN ] StringTest.getStrTest [ OK ] StringTest.getStrTest (0 ms) [ RUN ] StringTest.ChopTest [ OK ] StringTest.ChopTest (0 ms) [ RUN ] StringTest.CutTest [ OK ] StringTest.CutTest (0 ms) [ RUN ] StringTest.FlipTest [ OK ] StringTest.FlipTest (0 ms) [ RUN ] StringTest.Adler32Test [ OK ] StringTest.Adler32Test (0 ms) [ RUN ] StringTest.TrimTest [ OK ] StringTest.TrimTest (0 ms) [ RUN ] StringTest.FirstNonSpaceIndexTest [ OK ] StringTest.FirstNonSpaceIndexTest (0 ms) [ RUN ] StringTest.KillSpacesTest [ OK ] StringTest.KillSpacesTest (0 ms) [ RUN ] StringTest.CompressSpacesTest [ OK ] StringTest.CompressSpacesTest (0 ms) [ RUN ] StringTest.FirstSpaceIndexTest [ OK ] StringTest.FirstSpaceIndexTest (0 ms) [ RUN ] StringTest.FirstNonSpaceTest [ OK ] StringTest.FirstNonSpaceTest (0 ms) [ RUN ] StringTest.FirstNonSpace2Test [ OK ] StringTest.FirstNonSpace2Test (0 ms) [ RUN ] StringTest.FindTest [ OK ] StringTest.FindTest (0 ms) [ RUN ] StringTest.FindCharTest [ OK ] StringTest.FindCharTest (0 ms) [ RUN ] StringTest.FindKMPTest [ OK ] StringTest.FindKMPTest (0 ms) [ RUN ] StringTest.FindEndOfIdentTest [ OK ] StringTest.FindEndOfIdentTest (0 ms) [ RUN ] StringTest.FindAnyCaseTest [ OK ] StringTest.FindAnyCaseTest (0 ms) [ RUN ] StringTest.ContainsSubstringTest [ OK ] StringTest.ContainsSubstringTest (0 ms) [ RUN ] StringTest.FindBackwardsTest [ OK ] StringTest.FindBackwardsTest (0 ms) [ RUN ] StringTest.FindBinaryTest [ OK ] StringTest.FindBinaryTest (0 ms) [ RUN ] StringTest.EqualsTest [ OK ] StringTest.EqualsTest (0 ms) [ RUN ] StringTest.CompareTest [ OK ] StringTest.CompareTest (0 ms) [ RUN ] StringTest.EqualWithWildCharTest [ OK ] StringTest.EqualWithWildCharTest (0 ms) [ RUN ] StringTest.GreaterTest [ OK ] StringTest.GreaterTest (0 ms) [ RUN ] StringTest.LessTest [ OK ] StringTest.LessTest (0 ms) [ RUN ] StringTest.containsTest [ OK ] StringTest.containsTest (0 ms) [ RUN ] StringTest.beginswithTest [ OK ] StringTest.beginswithTest (0 ms) [ RUN ] StringTest.startswithTest [ OK ] StringTest.startswithTest (0 ms) [ RUN ] StringTest.endswithTest [ OK ] StringTest.endswithTest (0 ms) [ RUN ] StringTest.FormatTimeStringTest [ OK ] StringTest.FormatTimeStringTest (0 ms) [ RUN ] StringTest.ReplaceTest [ OK ] StringTest.ReplaceTest (0 ms) [ RUN ] StringTest.TokenizeTest [ OK ] StringTest.TokenizeTest (0 ms) [ RUN ] StringTest.toNumTest [ OK ] StringTest.toNumTest (0 ms) [ RUN ] StringTest.UpCaseTest [ OK ] StringTest.UpCaseTest (0 ms) [ RUN ] StringTest.LoCaseTest [ OK ] StringTest.LoCaseTest (0 ms) [ RUN ] StringTest.ProcessTreeBranchLengthTest [ OK ] StringTest.ProcessTreeBranchLengthTest (0 ms) [ RUN ] StringTest.ExtractEnclosedExpressionTest [ OK ] StringTest.ExtractEnclosedExpressionTest (0 ms) [ RUN ] StringTest.IsALiteralArgumentTest [ OK ] StringTest.IsALiteralArgumentTest (0 ms) [ RUN ] StringTest.StripQuotesTest [ OK ] StringTest.StripQuotesTest (0 ms) [ RUN ] StringTest.IsValidIdentifierTest [ OK ] StringTest.IsValidIdentifierTest (0 ms) [ RUN ] StringTest.IsValidRefIdentifierTest [ OK ] StringTest.IsValidRefIdentifierTest (0 ms) [ RUN ] StringTest.PathCompositionTest [ OK ] StringTest.PathCompositionTest (0 ms) [ RUN ] StringTest.PathSubtractionTest [ OK ] StringTest.PathSubtractionTest (0 ms) [ RUN ] StringTest.ConvertToAnIdentTest [ OK ] StringTest.ConvertToAnIdentTest (0 ms) [ RUN ] StringTest.ShortenVarIDTest [ OK ] StringTest.ShortenVarIDTest (0 ms) [ RUN ] StringTest.RegExpMatchOnceTest [ OK ] StringTest.RegExpMatchOnceTest (0 ms) [ RUN ] StringTest.RegExpMatchTest [ OK ] StringTest.RegExpMatchTest (0 ms) [ RUN ] StringTest.RegExpMatchAllTest [ OK ] StringTest.RegExpMatchAllTest (0 ms) [ RUN ] StringTest.LempelZivProductionHistoryTest [ OK ] StringTest.LempelZivProductionHistoryTest (0 ms) [ RUN ] StringTest.SortTest [ OK ] StringTest.SortTest (0 ms) [ RUN ] StringTest.FindTerminatorTest [ OK ] StringTest.FindTerminatorTest (0 ms) [ RUN ] StringTest.AppendAnAssignmentToBufferTest [ OK ] StringTest.AppendAnAssignmentToBufferTest (0 ms) [ RUN ] StringTest.BracketTest [ OK ] StringTest.BracketTest (0 ms) [ RUN ] StringTest.ParanthTest [ OK ] StringTest.ParanthTest (0 ms) [ RUN ] StringTest.EqualTest [ OK ] StringTest.EqualTest (0 ms) [ RUN ] StringTest.AmpersandTest [ OK ] StringTest.AmpersandTest (0 ms) [ RUN ] StringTest.DoubleLessTest [ OK ] StringTest.DoubleLessTest (0 ms) [ RUN ] StringTest.DoubleEqualTest [ OK ] StringTest.DoubleEqualTest (0 ms) [ RUN ] StringTest.GreaterOpTest [ OK ] StringTest.GreaterOpTest (0 ms) [ RUN ] StringTest.LesserOpTest [ OK ] StringTest.LesserOpTest (0 ms) [ RUN ] StringTest.LesserEqualOpTest [ OK ] StringTest.LesserEqualOpTest (0 ms) [ RUN ] StringTest.GreaterEqualOpTest [ OK ] StringTest.GreaterEqualOpTest (0 ms) [ RUN ] StringTest.NotEqualOpTest [ OK ] StringTest.NotEqualOpTest (0 ms) [----------] 77 tests from StringTest (1 ms total) [----------] Global test environment tear-down [==========] 180 tests from 6 test cases ran. (3 ms total) [ PASSED ] 180 tests. make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=cmake dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/hyphy-2.3.14\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.3.14+dfsg -B/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/depend make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/depend make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' cd /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/HYPHYMP.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' cd /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/build make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/build make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/HYPHYMP.dir/build'. make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/HYPHYMPI.dir/build'. make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' [100%] Built target HYPHYMP [100%] Built target HYPHYMPI make[2]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/p51.nex -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/p51.aa -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/integrase_BDA.nex -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/brown.nuc -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Tidbits -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/SimulateFromLF -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/RecombinationProcessor.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/dS and dN factors -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/dNanddSTrees.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/TreeLengthConstraint -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/SimulateFromLF -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/SimulateAndTabDN_DS -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/RNARateMatrix -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/PredictivePosteriorP -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/PartitionBranchesByClasses -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/Multiclass DN DS inference -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ModelFitSummaryAA -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ModelFitSummary -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/LocaldNdS -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/InferredAASubstitutionsCounter -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/FilterAssignments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ExpsPerDirection -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/DashPSTree -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/CopyBranchLengths -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ConvergentAndParallel -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ColorPSTree -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/CodonMutationToTreeMapper.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/AAMutationCounter -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ModelCounter -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MeanPairwiseDivergenceSubset -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MeanPairwiseDivergence -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MapSubstitutions -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ListUserFunctions -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/LRT -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/MappersHelpAA.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/MappersHelp.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/ChooseALF.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/GenBankSequences -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ExportLikelihoodFunction -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/CountSubstitutions -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/CodonMutationToTreeMapper -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/BranchLengthCI -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/BatchFileByURL -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/AAContent -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns/Tree Statistics -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns/Splits -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/doSPRSwap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/doNNISwap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/branchSwappingFunctions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Star_Decomposition -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Sequential_Addition -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Neighbor_Joining -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Exhaustive_Search -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/simpleBootstrap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/selectModelParameters.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/relratioBootstrap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/relrateBootstrapL.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/relrateBootstrap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/readIndexFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/queryTree.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper4.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper3.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper2.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper1.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/postprocessors.lst -- Installing: 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/build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/parameters.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf -- Installing: 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/build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/random.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/math.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/all-terms.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/last.date -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/globalChecker.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/files.lst -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/doSPRSwap.bf -- Installing: 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/build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_MFReader_.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_CMS_Aux.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_BMS_Aux.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/WebUpdate.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/WANC.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/PostScript.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/NJ.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/MPITools.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/GrabBag.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/DBTools.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/CodonTools.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/UpperBound.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TreeTools.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TopologySearch.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestCladeMeans.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestClade.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestBranchDNDS.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/models.lst -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/S4 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAREV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16A -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/PCH -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EX.dat -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Default -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/190 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SubtreeSelectionComparison.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StripStopCodons.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StrandGRMTest.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StarDecomposition.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SplitSequencesByPattern.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlidingNucWindow.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlatkinMaddison.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlatkinMaddison-2parts.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SiteRates2.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SiteRates.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SingleBreakpointRecomb-2.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimpleMutationCounter.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimmondsAI.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimilarityPlot.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SequentialAddition.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SequentialAddition.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentTop75.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentProt.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentNuc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf -- Installing: 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/build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/454.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide/K2P -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide/JC69 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/TrN.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/REV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/F81.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Binary -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Binary/F81.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Jones.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/nuc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/dinuc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/codon.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/aa.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Observed In Partition -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Estimated -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Equal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Lognormal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Half Normal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/General Discrete -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Beta -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Codon -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Equal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Observed In Partition -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Estimated -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Equal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Yeast_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Vertebratemtdna.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Mold_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Invertebrate_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Flatworm_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Euplotid_Nuclear.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Echinoderm_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Ciliate.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Blepharisma_Nuclear.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Ascidian_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/ibfs -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/ibfs/char_colors.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/TBD -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/TBD/Character Plot By Sequence -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Sequence Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Compare Subsets -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Character Plot Two -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Character Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Sort -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/SingleColumn -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Select Cells By Value -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Select Cells By Index -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/srs.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/sir.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/lhc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Running Sum -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Profile Mean Clustering -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Populate Cells -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Poisson Mixture Fit -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Median Profile Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Mean Profile Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Linear Fit -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/KH Resampler -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/K-Mean Clustering -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Histogram -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Goodness of Fit -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Gaussian Penalty Clustering -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Prior Moments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Posterior Moments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Posterior Distribution -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Most Likely Class Assignment -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Includes -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Includes/posteriors.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Event Posteriors -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Distribution Moments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Descriptive Statistics -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToTabFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToSQLFlatFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFrontierFastaFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFastaFileFromPandit.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFastaFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToConsole.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToChartWindow.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/HY_DBW_TemplateList -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/FromSQLFlatFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/DescriptiveStats.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Covariance -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Contigency Table -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Complex Select Cells By Value -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Column Operations -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Approximate_CDF -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/bin/HYPHYMP -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set runtime path of "/build/hyphy-2.3.14+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' # smallcaps for executables for bindir in `find . -type d -name bin` ; do \ for bin in ${bindir}/* ; do \ # ln -s `basename ${bin}` ${bindir}/`basename ${bin} | tr [A-Z] [a-z]` ; \ mv ${bindir}/`basename ${bin}` ${bindir}/`basename ${bin} | tr [A-Z] [a-z]` ; \ done ; \ done dh_install make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installinit -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_strip -O--buildsystem=cmake dh_makeshlibs -O--buildsystem=cmake dh_shlibdeps -O--buildsystem=cmake dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-pt/usr/bin/hyphymp was not linked against libssl.so.1.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-pt/usr/bin/hyphymp was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-pt/usr/bin/hyphymp was not linked against libcrypto.so.1.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-mpi/usr/bin/hyphympi was not linked against libssl.so.1.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-mpi/usr/bin/hyphympi was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-mpi/usr/bin/hyphympi was not linked against libcrypto.so.1.1 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.3.14+dfsg-1_arm64.deb'. dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.3.14+dfsg-1_arm64.deb'. dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.3.14+dfsg-1_arm64.deb'. dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.3.14+dfsg-1_all.deb'. dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.3.14+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hyphy_2.3.14+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2295 and its subdirectories I: Current time: Tue Sep 14 13:32:35 -12 2021 I: pbuilder-time-stamp: 1631669555 Wed Aug 12 19:09:39 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled10-arm64.debian.net. Wed Aug 12 19:09:39 UTC 2020 I: Preparing to do remote build '2' on codethink-sled10-arm64.debian.net. Wed Aug 12 19:21:15 UTC 2020 I: Deleting $TMPDIR on codethink-sled10-arm64.debian.net. Wed Aug 12 19:21:17 UTC 2020 I: hyphy_2.3.14+dfsg-1_arm64.changes: Format: 1.8 Date: Wed, 26 Sep 2018 16:55:30 +0200 Source: hyphy Binary: hyphy-common hyphy-mpi hyphy-mpi-dbgsym hyphy-pt hyphy-pt-dbgsym Architecture: all arm64 Version: 2.3.14+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hyphy-common - Hypothesis testing using Phylogenies (common files) hyphy-mpi - Hypothesis testing using Phylogenies (MPI version) hyphy-pt - Hypothesis testing using Phylogenies (pthreads version) Changes: hyphy (2.3.14+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Standards-Version: 4.2.1 Checksums-Sha1: 60f34ff04658db9e1e7627f6fd7f1b7e290dd24d 660980 hyphy-common_2.3.14+dfsg-1_all.deb 44855efa1ec61aca81033fb2bbce45387d6f81c3 4121316 hyphy-mpi-dbgsym_2.3.14+dfsg-1_arm64.deb 983ccc37c55b47b0959e5aa43b068b652dd63853 790248 hyphy-mpi_2.3.14+dfsg-1_arm64.deb 97bfa8131adb13aa5c88c9338548ad3fe2d71d19 2624464 hyphy-pt-dbgsym_2.3.14+dfsg-1_arm64.deb 669796e2270835329df4509a32f6e2c5b9821c50 760084 hyphy-pt_2.3.14+dfsg-1_arm64.deb a557142b463f27ac56433506f46388005f50038a 7604 hyphy_2.3.14+dfsg-1_arm64.buildinfo Checksums-Sha256: 4c896db79e7c381e4e7374ef15e13e702fe75c731a7ac64da32dfaa89bc52f8b 660980 hyphy-common_2.3.14+dfsg-1_all.deb e20ee5ece6e007e35ff34daaafc553bf456672d7d2b1bea74e38926352847fac 4121316 hyphy-mpi-dbgsym_2.3.14+dfsg-1_arm64.deb c80c2ac8d36becbfadfdac0c244026ca76b1405fd3d9211884d9f8164adb04e4 790248 hyphy-mpi_2.3.14+dfsg-1_arm64.deb bac12aee2fe15519d1ca6440846a9edcffdf9da10e6818ca6d682cc53d59f9c1 2624464 hyphy-pt-dbgsym_2.3.14+dfsg-1_arm64.deb 7455e9faceef96ed099a262fca0294080ae91b0fa7232812c30b571a94c1ad03 760084 hyphy-pt_2.3.14+dfsg-1_arm64.deb 59615da89783c8292060ded0971478fee853d15c9acedeb28412a3f5b0096996 7604 hyphy_2.3.14+dfsg-1_arm64.buildinfo Files: e7a8bb9f82614e3c7469768c9848690a 660980 science optional hyphy-common_2.3.14+dfsg-1_all.deb 578b34882a071407ef1c4c12315dd0db 4121316 debug optional hyphy-mpi-dbgsym_2.3.14+dfsg-1_arm64.deb 6a79e0d40f798f221373dc3ee6a66e36 790248 science optional hyphy-mpi_2.3.14+dfsg-1_arm64.deb 85d27ceca2b16bfd7e1bcc85e3d06cf1 2624464 debug optional hyphy-pt-dbgsym_2.3.14+dfsg-1_arm64.deb 934742b16dc192bc257a405f1f35156f 760084 science optional hyphy-pt_2.3.14+dfsg-1_arm64.deb 0bd8be583bf9b0893b557d74c8f4db6e 7604 science optional hyphy_2.3.14+dfsg-1_arm64.buildinfo Wed Aug 12 19:21:18 UTC 2020 I: diffoscope 155 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.XtZFaTtM3K/hyphy_2.3.14+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.XtZFaTtM3K/hyphy_2.3.14+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.XtZFaTtM3K/hyphy_2.3.14+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.XtZFaTtM3K/b1/hyphy_2.3.14+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.XtZFaTtM3K/b2/hyphy_2.3.14+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.402s) 0.402s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.149s) 0.149s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Aug 12 19:21:19 UTC 2020 I: diffoscope 155 found no differences in the changes files, and a .buildinfo file also exists. Wed Aug 12 19:21:19 UTC 2020 I: hyphy from buster built successfully and reproducibly on arm64. Wed Aug 12 19:21:21 UTC 2020 I: Submitting .buildinfo files to external archives: Wed Aug 12 19:21:21 UTC 2020 I: Submitting 12K b1/hyphy_2.3.14+dfsg-1_arm64.buildinfo.asc Wed Aug 12 19:21:22 UTC 2020 I: Submitting 12K b2/hyphy_2.3.14+dfsg-1_arm64.buildinfo.asc Wed Aug 12 19:21:23 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Aug 12 19:21:23 UTC 2020 I: Done submitting .buildinfo files. Wed Aug 12 19:21:23 UTC 2020 I: Removing signed hyphy_2.3.14+dfsg-1_arm64.buildinfo.asc files: removed './b1/hyphy_2.3.14+dfsg-1_arm64.buildinfo.asc' removed './b2/hyphy_2.3.14+dfsg-1_arm64.buildinfo.asc'