Wed Sep 2 20:01:14 UTC 2020 I: starting to build htseq/buster/arm64 on jenkins on '2020-09-02 20:00' Wed Sep 2 20:01:14 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_15/9674/console.log Wed Sep 2 20:01:14 UTC 2020 I: Downloading source for buster/htseq=0.11.2-1 --2020-09-02 20:01:14-- http://deb.debian.org/debian/pool/main/h/htseq/htseq_0.11.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2294 (2.2K) Saving to: ‘htseq_0.11.2-1.dsc’ 0K .. 100% 176M=0s 2020-09-02 20:01:14 (176 MB/s) - ‘htseq_0.11.2-1.dsc’ saved [2294/2294] Wed Sep 2 20:01:14 UTC 2020 I: htseq_0.11.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htseq Binary: python-htseq, python3-htseq Architecture: any Version: 0.11.2-1 Maintainer: Debian Med Packaging Team Uploaders: Diane Trout , Andreas Tille Homepage: http://www-huber.embl.de/users/anders/HTSeq/doc/overview.html Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/htseq Vcs-Git: https://salsa.debian.org/med-team/htseq.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper (>= 12~), python-debian, python-setuptools, python-all-dev, python-numpy, python-matplotlib, python-pysam, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython, cython3 Package-List: python-htseq deb python optional arch=any python3-htseq deb python optional arch=any Checksums-Sha1: 4578d53205a2f2407a200415449d41799a1552ab 611204 htseq_0.11.2.orig.tar.gz 2b16f02185390b1b75559c3256620c3fdfe18d92 10588 htseq_0.11.2-1.debian.tar.xz Checksums-Sha256: 65c4c13968506c7df92e97124df96fdd041c4476c12a548d67350ba8b436bcfc 611204 htseq_0.11.2.orig.tar.gz 3448b229f991de19782e8a503d4cc36984785f2dae930fb699f12fcfde9a1a0a 10588 htseq_0.11.2-1.debian.tar.xz Files: 0d03a366ef6f09787ac09be5877c10b3 611204 htseq_0.11.2.orig.tar.gz c78ac274a10290b5aa725d7d0fdca23d 10588 htseq_0.11.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlw5G2QRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtElVQ//akRSFQe4D+OkLhXK4pcGyV6XwGXfDFc3 n9iun05wzvQNhBhKj2XNfnbXmfyiVAGWRDUFd7uDihYUV0hQGSZvBGWGQ/BB+ZoW qhl6LdrmJLbzZtThDd0Yj07ImA6OqISQpSAy5VTD67fGngmq/WAQJnRGqgKjAK2a EhXBm/yGFUVcDFXpcZGqu19m2rW2MmkQt8A/wtLFg9G9nmWGXKrjVKznWl2wTULR yxAVi7N2iwdsuxeu2ol8SqrhF6IAuPOhoARLxLmIftAmVey7sszvvN4hLPaHy4Am FKnxVse/0lvgqz+3DElxfA9RH1gZMNbQS+JjHuTK+D/GqiVtU1cSlmJ4qFYXJssx LoG5Rx7i29nqxAMnGhCAcDIgeU+Hs8ARYCWm4/F3oyQ5lze7ZlBUmVKLGmEc8N0r 4XBPFnQicupM1C2v03VS/rQjHaiN/TaZpw4yb41LaK+Lqgg1OraGDnlOHeiZUtFg CXS37ovG0o49VM3fqpoI6FC03aCpUTw1tSIlUy8jbzYKKRM5D8Nmi+OsU9zPWI14 /CaSVe8IG2Pvr+PHXW97GsyOloeWWmjjFFxdXK7d6NbmKMsE4vfj122anEwnaH9t PNgxo1O6xntR28s7D60Oht2bt4ZfKVsLHe4d1OAThdIGbZlvo3yCkSR287JKYqoP o8cv0fdiaSA= =Zk2w -----END PGP SIGNATURE----- Wed Sep 2 20:01:14 UTC 2020 I: Checking whether the package is not for us Wed Sep 2 20:01:14 UTC 2020 I: Starting 1st build on remote node codethink-sled12-arm64.debian.net. Wed Sep 2 20:01:14 UTC 2020 I: Preparing to do remote build '1' on codethink-sled12-arm64.debian.net. Wed Sep 2 20:06:53 UTC 2020 I: Deleting $TMPDIR on codethink-sled12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 2 08:01:25 -12 2020 I: pbuilder-time-stamp: 1599076885 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [htseq_0.11.2-1.dsc] I: copying [./htseq_0.11.2.orig.tar.gz] I: copying [./htseq_0.11.2-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 11 10:40:36 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htseq_0.11.2-1.dsc dpkg-source: info: extracting htseq in htseq-0.11.2 dpkg-source: info: unpacking htseq_0.11.2.orig.tar.gz dpkg-source: info: unpacking htseq_0.11.2-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30991/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30991' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Cz5QDZxUoi/pbuilderrc_DMRb --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Cz5QDZxUoi/b1 --logfile b1/build.log htseq_0.11.2-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled12-arm64 4.4.0-189-generic #219-Ubuntu SMP Tue Aug 11 12:24:40 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 30 20:25 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/30991/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), python-debian, python-setuptools, python-all-dev, python-numpy, python-matplotlib, python-pysam, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on python-debian; however: Package python-debian is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-matplotlib; however: Package python-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python-pysam; however: Package python-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-debian; however: Package python3-debian is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on swig; however: Package swig is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhts2{a} libicu63{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-backports.functools-lru-cache{a} python-chardet{a} python-cycler{a} python-dateutil{a} python-debian{a} python-dev{a} python-kiwisolver{a} python-matplotlib{a} python-matplotlib-data{a} python-matplotlib2-data{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-pyparsing{a} python-pysam{a} python-setuptools{a} python-six{a} python-subprocess32{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-chardet{a} python3-cycler{a} python3-dateutil{a} python3-debian{a} python3-dev{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pysam{a} python3-setuptools{a} python3-six{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig3.0{a} ttf-bitstream-vera{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python-apt python-pil python-tk python3-apt python3-pil python3-tk shared-mime-info wget xdg-user-dirs 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After unpacking 323 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 cython arm64 0.29.2-2 [1244 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 cython3 arm64 0.29.2-2 [1259 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 fonts-lyx all 2.3.2-1 [199 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libcurl3-gnutls arm64 7.64.0-4+deb10u1 [310 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libdeflate0 arm64 1.2-1 [51.4 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libhts2 arm64 1.9-11 [277 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 89 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 libpython-all-dev arm64 2.7.16-1 [1064 B] Get: 92 http://deb.debian.org/debian buster/main arm64 libpython3.7 arm64 3.7.3-2+deb10u2 [1371 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 libpython3.7-dev arm64 3.7.3-2+deb10u2 [2380 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 libpython3-dev arm64 3.7.3-1 [20.1 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libpython3-all-dev arm64 3.7.3-1 [1068 B] Get: 96 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 97 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 99 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 100 http://deb.debian.org/debian buster/main arm64 python-all-dev arm64 2.7.16-1 [1068 B] Get: 101 http://deb.debian.org/debian buster/main arm64 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get: 102 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 python-chardet all 3.0.4-3 [80.6 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 python-cycler all 0.10.0-1 [7448 B] Get: 106 http://deb.debian.org/debian buster/main arm64 python-dateutil all 2.7.3-3 [76.8 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 python-debian all 0.1.35 [78.7 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 python-kiwisolver arm64 1.0.1-2+b1 [64.0 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 ttf-bitstream-vera all 1.10-8 [352 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 python-tz all 2019.1-1 [33.6 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 python-subprocess32 arm64 3.5.3-1 [29.6 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 python-matplotlib arm64 2.2.3-6 [5033 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get: 117 http://deb.debian.org/debian buster/main arm64 python-pysam arm64 0.15.2+ds-2 [1396 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 python3-all arm64 3.7.3-1 [1068 B] Get: 120 http://deb.debian.org/debian buster/main arm64 python3.7-dev arm64 3.7.3-2+deb10u2 [509 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 python3-dev arm64 3.7.3-1 [1264 B] Get: 122 http://deb.debian.org/debian buster/main arm64 python3-all-dev arm64 3.7.3-1 [1064 B] Get: 123 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 125 http://deb.debian.org/debian buster/main arm64 python3-six all 1.12.0-1 [15.7 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 python3-cycler all 0.10.0-1 [7556 B] Get: 127 http://deb.debian.org/debian buster/main arm64 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 128 http://deb.debian.org/debian buster/main arm64 python3-debian all 0.1.35 [78.8 kB] Get: 129 http://deb.debian.org/debian buster/main arm64 python3-kiwisolver arm64 1.0.1-2+b1 [62.9 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 python3-numpy arm64 1:1.16.2-1 [1991 kB] Get: 132 http://deb.debian.org/debian buster/main arm64 python3-matplotlib arm64 3.0.2-2 [5310 kB] Get: 133 http://deb.debian.org/debian buster/main arm64 python3-pysam arm64 0.15.2+ds-2 [1423 kB] Get: 134 http://deb.debian.org/debian buster/main arm64 python3-setuptools all 40.8.0-1 [306 kB] Get: 135 http://deb.debian.org/debian buster/main arm64 swig3.0 arm64 3.0.12-2 [1321 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 swig arm64 3.0.12-2 [310 kB] Fetched 103 MB in 8s (12.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_arm64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_arm64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:arm64. Preparing to unpack .../14-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:arm64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython2-stdlib:arm64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.16-1) ... Setting up libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20664 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_arm64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libpython3.7-minimal:arm64. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20918 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_arm64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:arm64. Preparing to unpack .../libmpdec2_2.4.2-2_arm64.deb ... Unpacking libmpdec2:arm64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:arm64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u2_arm64.deb ... Unpacking libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21330 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_arm64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../006-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../007-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../008-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... 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Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.2-1) ... Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up libdeflate0:arm64 (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:arm64 (2.2.6-2+deb10u1) ... Setting up swig3.0 (3.0.12-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libpng16-16:arm64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up python-matplotlib2-data (2.2.3-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up python-matplotlib-data (3.0.2-2) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Setting up swig (3.0.12-2) ... Setting up libpython3.7:arm64 (3.7.3-2+deb10u2) ... Setting up libtool (2.4.6-9) ... Setting up libpython3.7-dev:arm64 (3.7.3-2+deb10u2) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:arm64 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up libpython3-all-dev:arm64 (3.7.3-1) ... Setting up python3-cycler (0.10.0-1) ... Setting up cython3 (0.29.2-2) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libpython2-dev:arm64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up cython (0.29.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up libhts2:arm64 (1.9-11) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-all (3.7.3-1) ... Setting up python-all (2.7.16-1) ... Setting up libpython-dev:arm64 (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-dateutil (2.7.3-3) ... Setting up python3-chardet (3.0.4-3) ... Setting up python-subprocess32 (3.5.3-1) ... Setting up python3-debian (0.1.35) ... Setting up python3-dev (3.7.3-1) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-backports.functools-lru-cache (1.5-3) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python-tz (2019.1-1) ... Setting up python-kiwisolver (1.0.1-2+b1) ... Setting up python-chardet (3.0.4-3) ... Setting up python-debian (0.1.35) ... Setting up python-dev (2.7.16-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up python3-matplotlib (3.0.2-2) ... Setting up python3-pysam (0.15.2+ds-2) ... Setting up python-pysam (0.15.2+ds-2) ... Setting up libpython-all-dev:arm64 (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-cycler (0.10.0-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up python-matplotlib (2.2.3-6) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/htseq-0.11.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package htseq dpkg-buildpackage: info: source version 0.11.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/htseq-0.11.2' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean symlinking folders for python2 running clean removing '/build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean symlinking folders for python3 running clean removing '/build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it # setup.py creates some symlinks in clean target # remove these links to keep source tree clean for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \ if [ -L ${link} ] ; then rm ${link} ; fi \ done make[1]: Leaving directory '/build/htseq-0.11.2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config symlinking folders for python2 running config I: pybuild base:217: python3.7 setup.py config symlinking folders for python3 running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build symlinking folders for python2 running build running build_py running preprocess cythonizing Cython version 0.29.2 /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/htseq-0.11.2/python2/src/HTSeq/_HTSeq.pxd tree = Parsing.p_module(s, pxd, full_module_name) SWIGging moving swigged .py module done creating /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq creating /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts running build_ext building 'HTSeq._HTSeq' extension creating build creating build/temp.linux-arm64-2.7 creating build/temp.linux-arm64-2.7/src aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/_HTSeq.c -o build/temp.linux-arm64-2.7/src/_HTSeq.o -w aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/src/_HTSeq.o -o /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/StepVector_wrap.cxx -o build/temp.linux-arm64-2.7/src/StepVector_wrap.o -w cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/src/StepVector_wrap.o -o /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_StepVector.so running build_scripts creating build/scripts-2.7 copying and adjusting scripts/htseq-qa -> build/scripts-2.7 copying and adjusting scripts/htseq-count -> build/scripts-2.7 changing mode of build/scripts-2.7/htseq-qa from 644 to 755 changing mode of build/scripts-2.7/htseq-count from 644 to 755 I: pybuild base:217: /usr/bin/python3 setup.py build symlinking folders for python3 running build running build_py running preprocess cythonizing Cython version 0.29.2 SWIGging correcting SWIG for python3 /bin/sh: 1: 2to3: not found SWIG not found, but transpiled files found moving swigged .py module done creating /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq copying HTSeq/__init__.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq copying HTSeq/StepVector.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq creating /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts running build_ext building 'HTSeq._HTSeq' extension creating build/temp.linux-arm64-3.7 creating build/temp.linux-arm64-3.7/src aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/_HTSeq.c -o build/temp.linux-arm64-3.7/src/_HTSeq.o -w aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/src/_HTSeq.o -o /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-aarch64-linux-gnu.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/StepVector_wrap.cxx -o build/temp.linux-arm64-3.7/src/StepVector_wrap.o -w aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/src/StepVector_wrap.o -o /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/_StepVector.cpython-37m-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting scripts/htseq-qa -> build/scripts-3.7 copying and adjusting scripts/htseq-count -> build/scripts-3.7 changing mode of build/scripts-3.7/htseq-qa from 644 to 755 changing mode of build/scripts-3.7/htseq-count from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build; python2.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK I: pybuild base:217: cd /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build; python3.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/htseq-0.11.2/debian/python-htseq symlinking folders for python2 running install running build running build_py running preprocess cythonizing Cython version 0.29.2 /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/htseq-0.11.2/python2/src/HTSeq/_HTSeq.pxd tree = Parsing.p_module(s, pxd, full_module_name) SWIGging moving swigged .py module done copying HTSeq/StepVector.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c src/_HTSeq.c -o build/temp.linux-arm64-2.7/src/_HTSeq.o -w aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/src/_HTSeq.o -o /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq.so building 'HTSeq._StepVector' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/StepVector_wrap.cxx -o build/temp.linux-arm64-2.7/src/StepVector_wrap.o -w cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++ aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/src/StepVector_wrap.o -o /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_StepVector.so running build_scripts running install_lib creating /build/htseq-0.11.2/debian/python-htseq creating /build/htseq-0.11.2/debian/python-htseq/usr creating /build/htseq-0.11.2/debian/python-htseq/usr/lib creating /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7 creating /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages creating /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_StepVector.so -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq.so -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_version.py -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/StepVector.py -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq creating /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts/count.py -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts/qa.py -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/scripts/__init__.py -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/_HTSeq_internal.py -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython2_2.7_htseq/build/HTSeq/__init__.py -> /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq byte-compiling /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/_version.py to _version.pyc byte-compiling /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/StepVector.py to StepVector.pyc byte-compiling /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts/count.py to count.pyc byte-compiling /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts/qa.py to qa.pyc byte-compiling /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/scripts/__init__.py to __init__.pyc byte-compiling /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.pyc byte-compiling /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/__init__.py to __init__.pyc running install_egg_info running egg_info writing requirements to HTSeq.egg-info/requires.txt writing HTSeq.egg-info/PKG-INFO writing top-level names to HTSeq.egg-info/top_level.txt writing dependency_links to HTSeq.egg-info/dependency_links.txt reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.md' warning: no previously-included files found matching 'todo.txt' no previously-included directories found matching 'example_data' no previously-included directories found matching 'doc' no previously-included directories found matching 'test' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/htseq-0.11.2/debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq-0.11.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/htseq-0.11.2/debian/python-htseq/usr/bin copying build/scripts-2.7/htseq-count -> /build/htseq-0.11.2/debian/python-htseq/usr/bin copying build/scripts-2.7/htseq-qa -> /build/htseq-0.11.2/debian/python-htseq/usr/bin changing mode of /build/htseq-0.11.2/debian/python-htseq/usr/bin/htseq-count to 755 changing mode of /build/htseq-0.11.2/debian/python-htseq/usr/bin/htseq-qa to 755 I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/htseq-0.11.2/debian/python3-htseq symlinking folders for python3 running install running build running build_py running preprocess cythonizing Cython version 0.29.2 SWIGging correcting SWIG for python3 /bin/sh: 1: 2to3: not found SWIG not found, but transpiled files found moving swigged .py module done copying HTSeq/StepVector.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq copying HTSeq/_version.py -> /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq running build_ext building 'HTSeq._HTSeq' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/_HTSeq.c -o build/temp.linux-arm64-3.7/src/_HTSeq.o -w aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/htseq-0.11.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/src/_HTSeq.o -o /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-aarch64-linux-gnu.so running build_scripts running install_lib creating /build/htseq-0.11.2/debian/python3-htseq creating /build/htseq-0.11.2/debian/python3-htseq/usr creating /build/htseq-0.11.2/debian/python3-htseq/usr/lib creating /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7 creating /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages creating /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq.cpython-37m-aarch64-linux-gnu.so -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/_version.py -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/StepVector.py -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq creating /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/_version.cpython-37.pyc -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-37.pyc -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/StepVector.cpython-37.pyc -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/__pycache__/__init__.cpython-37.pyc -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__pycache__ copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/_StepVector.cpython-37m-aarch64-linux-gnu.so -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq creating /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts creating /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__pycache__ copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-37.pyc -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__pycache__ copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/count.py -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/qa.py -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/scripts/__init__.py -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/_HTSeq_internal.py -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq copying /build/htseq-0.11.2/.pybuild/cpython3_3.7_htseq/build/HTSeq/__init__.py -> /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq byte-compiling /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/_version.py to _version.cpython-37.pyc byte-compiling /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/StepVector.py to StepVector.cpython-37.pyc byte-compiling /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/count.py to count.cpython-37.pyc byte-compiling /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/qa.py to qa.cpython-37.pyc byte-compiling /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-37.pyc byte-compiling /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-37.pyc byte-compiling /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq/__init__.py to __init__.cpython-37.pyc running install_egg_info running egg_info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.md' warning: no previously-included files found matching 'todo.txt' no previously-included directories found matching 'example_data' no previously-included directories found matching 'doc' no previously-included directories found matching 'test' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /build/htseq-0.11.2/debian/python3-htseq/usr/lib/python3.7/dist-packages/HTSeq-0.11.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/htseq-0.11.2/debian/python3-htseq/usr/bin copying build/scripts-3.7/htseq-count -> /build/htseq-0.11.2/debian/python3-htseq/usr/bin copying build/scripts-3.7/htseq-qa -> /build/htseq-0.11.2/debian/python3-htseq/usr/bin changing mode of /build/htseq-0.11.2/debian/python3-htseq/usr/bin/htseq-count to 755 changing mode of /build/htseq-0.11.2/debian/python3-htseq/usr/bin/htseq-qa to 755 debian/rules override_dh_install make[1]: Entering directory '/build/htseq-0.11.2' dh_install # binaries should be only in python3 package rm -rf debian/python-htseq/usr/bin make[1]: Leaving directory '/build/htseq-0.11.2' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild W: dh_python2:479: Please add dh-python package to Build-Depends dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-37m-aarch64-linux-gnu.so debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-37m-aarch64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/_StepVector.so debian/python-htseq/usr/lib/python2.7/dist-packages/HTSeq/_HTSeq.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-htseq: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-htseq-dbgsym' in '../python-htseq-dbgsym_0.11.2-1_arm64.deb'. dpkg-deb: building package 'python-htseq' in '../python-htseq_0.11.2-1_arm64.deb'. dpkg-deb: building package 'python3-htseq' in '../python3-htseq_0.11.2-1_arm64.deb'. dpkg-deb: building package 'python3-htseq-dbgsym' in '../python3-htseq-dbgsym_0.11.2-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../htseq_0.11.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30991 and its subdirectories I: Current time: Wed Sep 2 08:06:51 -12 2020 I: pbuilder-time-stamp: 1599077211 Wed Sep 2 20:06:55 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled13-arm64.debian.net. Wed Sep 2 20:06:55 UTC 2020 I: Preparing to do remote build '2' on codethink-sled13-arm64.debian.net. Wed Sep 2 20:13:33 UTC 2020 I: Deleting $TMPDIR on codethink-sled13-arm64.debian.net. Wed Sep 2 20:13:34 UTC 2020 I: htseq_0.11.2-1_arm64.changes: Format: 1.8 Date: Fri, 11 Jan 2019 23:31:53 +0100 Source: htseq Binary: python-htseq python-htseq-dbgsym python3-htseq python3-htseq-dbgsym Architecture: arm64 Version: 0.11.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-htseq - Python high-throughput genome sequencing read analysis utilities python3-htseq - Python3 high-throughput genome sequencing read analysis utilities Changes: htseq (0.11.2-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Secure URI in copyright format * Drop ancient X-Python-Version field Checksums-Sha1: 32571320b62c30878b36438df6d8ad229306460b 8680 htseq_0.11.2-1_arm64.buildinfo 21d2f623a7e6512eab346b774e890f0ff0e08b6a 782776 python-htseq-dbgsym_0.11.2-1_arm64.deb e61f95f66f17db7f4fc5aea30b898087a5fa90f6 188624 python-htseq_0.11.2-1_arm64.deb 781b729664f7df6862b09e48615c5f746a78ba8a 931716 python3-htseq-dbgsym_0.11.2-1_arm64.deb 4f1913cfdfc94a2b30d79156e52db2fd32e6579c 204832 python3-htseq_0.11.2-1_arm64.deb Checksums-Sha256: eddc334a50a40644f5a0e89fe9cc3ab10ccdd0ed0ba0c76610118b04f61946e9 8680 htseq_0.11.2-1_arm64.buildinfo 6dfbaa84450382f2e5b0747fc81afee3c8c644189826f0785aee91298da8b2e9 782776 python-htseq-dbgsym_0.11.2-1_arm64.deb f0e4e1deb8b8fb19c4086584642d3ee6d4fd7a1d58663bc579f71a14caee0cc9 188624 python-htseq_0.11.2-1_arm64.deb e0a4930a49d6e2083427ce48301c0074df96d671c6ac6a04e7c5d9e86f02da5d 931716 python3-htseq-dbgsym_0.11.2-1_arm64.deb 634e8fca8cb478aad0c7a066c2143ef96b3386c5a6cae588f320658062560509 204832 python3-htseq_0.11.2-1_arm64.deb Files: dc89e6b8360fe0c7778f6c95f7fc0808 8680 python optional htseq_0.11.2-1_arm64.buildinfo 5370f73f876bbfc700e2c89ac31b7e93 782776 debug optional python-htseq-dbgsym_0.11.2-1_arm64.deb 17e09775372d84857c41e6ac363a626c 188624 python optional python-htseq_0.11.2-1_arm64.deb ec4e1c9768b9086d42c7fafaf9edea7e 931716 debug optional python3-htseq-dbgsym_0.11.2-1_arm64.deb 2e919c132a630104204d95ba941f929a 204832 python optional python3-htseq_0.11.2-1_arm64.deb Wed Sep 2 20:15:20 UTC 2020 I: diffoscope 158 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Cz5QDZxUoi/htseq_0.11.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Cz5QDZxUoi/htseq_0.11.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Cz5QDZxUoi/htseq_0.11.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Cz5QDZxUoi/b1/htseq_0.11.2-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.Cz5QDZxUoi/b2/htseq_0.11.2-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.765s) 0.765s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.545s) 0.545s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Sep 2 20:16:03 UTC 2020 I: diffoscope 158 found no differences in the changes files, and a .buildinfo file also exists. Wed Sep 2 20:16:03 UTC 2020 I: htseq from buster built successfully and reproducibly on arm64. Wed Sep 2 20:16:11 UTC 2020 I: Submitting .buildinfo files to external archives: Wed Sep 2 20:16:11 UTC 2020 I: Submitting 12K b1/htseq_0.11.2-1_arm64.buildinfo.asc Wed Sep 2 20:16:12 UTC 2020 I: Submitting 12K b2/htseq_0.11.2-1_arm64.buildinfo.asc Wed Sep 2 20:16:13 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Sep 2 20:16:13 UTC 2020 I: Done submitting .buildinfo files. Wed Sep 2 20:16:13 UTC 2020 I: Removing signed htseq_0.11.2-1_arm64.buildinfo.asc files: removed './b1/htseq_0.11.2-1_arm64.buildinfo.asc' removed './b2/htseq_0.11.2-1_arm64.buildinfo.asc'