Sun Oct 11 02:56:37 UTC 2020 I: starting to build fastp/buster/arm64 on jenkins on '2020-10-11 02:56' Sun Oct 11 02:56:37 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/14121/console.log Sun Oct 11 02:56:37 UTC 2020 I: Downloading source for buster/fastp=0.19.6+dfsg-1 --2020-10-11 02:56:38-- http://deb.debian.org/debian/pool/main/f/fastp/fastp_0.19.6+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1980 (1.9K) Saving to: ‘fastp_0.19.6+dfsg-1.dsc’ 0K . 100% 6.79M=0s 2020-10-11 02:56:38 (6.79 MB/s) - ‘fastp_0.19.6+dfsg-1.dsc’ saved [1980/1980] Sun Oct 11 02:56:38 UTC 2020 I: fastp_0.19.6+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fastp Binary: fastp Architecture: any Version: 0.19.6+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://github.com/OpenGene/fastp Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/fastp Vcs-Git: https://salsa.debian.org/med-team/fastp.git Testsuite: autopkgtest Build-Depends: debhelper (>= 12), help2man, zlib1g-dev Package-List: fastp deb science optional arch=any Checksums-Sha1: 7ffabc099b53b20d94b387b2f063456362ef12e1 57036 fastp_0.19.6+dfsg.orig.tar.xz 8f0f8689187f0ccf2eb8d748a2f295cc86b17f03 3700 fastp_0.19.6+dfsg-1.debian.tar.xz Checksums-Sha256: 0e1d93378d2ccc0edf306687bf6f282853ba1951c3c9c860be76541d064ed5b0 57036 fastp_0.19.6+dfsg.orig.tar.xz ead0ad9a3f6dd252de64ada900597fb18b77028995a3f2c1dfc023a4d9ac3894 3700 fastp_0.19.6+dfsg-1.debian.tar.xz Files: 6c04036e66b98bef15a6cbf8eeae1101 57036 fastp_0.19.6+dfsg.orig.tar.xz 31c6fcb7c9f179b23dc12d12e1c181ef 3700 fastp_0.19.6+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAlxCRPASHGRhaXNzaUBk ZWJpYW4ub3JnAAoJEGEu8WE+BQ9UE8EP/iVFh6HGpe/un9VskJWoQyyeemEBPQGZ HtxcmmCR9QIv3i6vPJNbFIbjIbUsKaN53ovS0Wm/eXJqpwvuX2UUp2ShyRoRJm2f a2huVRSivYadbmXw8hthzYjFdjYJPYCt9vUIYhAOKlFGLPC9NCXu1dBtnsQ1b/d/ fe63EtosIcZE/LWppWku6NyRx5qStiTq+bgONRD3UVwlzdiOI1I+4LB0KV3ZKT/k 3zRHiFn3QiUJg0ymXorIJvSUJMnhjw3Fm/YTEaXXgZBnujyxLpAIBg3Eu3CYhjuQ RzlQ/LehN70VRLHILCQYR1L8B4/VzUb++Icn0y8vhwcVejWS/clbj1/ljLKACiV0 9s/xPQEkiQCbs11nRN5vlOTms5tWvDuVVw69XpanndLLg3c1BqNYPeO96SSdr/Eb GZZ/K+AyA1VhTTrGt8IcwCEY6dv3rW56VFORIB2AYmj5luyI9Il2YKreDKNoH9cM HP5o4BpqWeHKJYLKcl3GiFODrkX9RxEVsagMsyWb569S7TGSsJBsN4lsllkQBlIx 6sG3X3jWmQte+W5T8X0U4n1mqhT4brEaUmEiF0J7erPDJtJrIEn14AIjYDKBk+FU pZIttli2Z8repPllRWtakEnnXpV0Wd3RCFQ7W0o4/aA3JKDxEPiK6pd6NzPVOB/g RlZgjHmEfND6 =+boT -----END PGP SIGNATURE----- Sun Oct 11 02:56:38 UTC 2020 I: Checking whether the package is not for us Sun Oct 11 02:56:38 UTC 2020 I: Starting 1st build on remote node codethink-sled11-arm64.debian.net. Sun Oct 11 02:56:38 UTC 2020 I: Preparing to do remote build '1' on codethink-sled11-arm64.debian.net. Sun Oct 11 02:57:50 UTC 2020 I: Deleting $TMPDIR on codethink-sled11-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 12 21:19:45 -12 2021 I: pbuilder-time-stamp: 1636795185 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastp_0.19.6+dfsg-1.dsc] I: copying [./fastp_0.19.6+dfsg.orig.tar.xz] I: copying [./fastp_0.19.6+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 18 09:28:16 2019 -12 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastp_0.19.6+dfsg-1.dsc dpkg-source: info: extracting fastp in fastp-0.19.6+dfsg dpkg-source: info: unpacking fastp_0.19.6+dfsg.orig.tar.xz dpkg-source: info: unpacking fastp_0.19.6+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24316/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24316' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.FvxK03S7wU/pbuilderrc_snEw --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.FvxK03S7wU/b1 --logfile b1/build.log fastp_0.19.6+dfsg-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled11-arm64 4.4.0-190-generic #220-Ubuntu SMP Fri Aug 28 23:03:33 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 9 02:48 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/24316/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12), help2man, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 70.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 liblocale-gettext-perl arm64 1.07-3+b4 [18.8 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 help2man arm64 1.47.8 [177 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Fetched 19.0 MB in 1s (16.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-3+b4_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../09-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../12-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. 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Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package help2man. Preparing to unpack .../34-help2man_1.47.8_arm64.deb ... Unpacking help2man (1.47.8) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../35-zlib1g-dev_1%3a1.2.11.dfsg-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up help2man (1.47.8) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/fastp-0.19.6+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package fastp dpkg-buildpackage: info: source version 0.19.6+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/fastp-0.19.6+dfsg' dh_auto_build make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/fastp-0.19.6+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/stats.cpp -o obj/stats.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/htmlreporter.cpp -o obj/htmlreporter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/jsonreporter.cpp -o obj/jsonreporter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/sequence.cpp -o obj/sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/basecorrector.cpp -o obj/basecorrector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/unittest.cpp -o obj/unittest.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/threadconfig.cpp -o obj/threadconfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/filterresult.cpp -o obj/filterresult.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/read.cpp -o obj/read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/overlapanalysis.cpp -o obj/overlapanalysis.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/processor.cpp -o obj/processor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/adaptertrimmer.cpp -o obj/adaptertrimmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/writer.cpp -o obj/writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/umiprocessor.cpp -o obj/umiprocessor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/peprocessor.cpp -o obj/peprocessor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/polyx.cpp -o obj/polyx.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/duplicate.cpp -o obj/duplicate.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/main.cpp -o obj/main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/nucleotidetree.cpp -o obj/nucleotidetree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/evaluator.cpp -o obj/evaluator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/options.cpp -o obj/options.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/fastqreader.cpp -o obj/fastqreader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/writerthread.cpp -o obj/writerthread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/seprocessor.cpp -o obj/seprocessor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastp-0.19.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DDYNAMIC_ZLIB -std=c++11 -g -I./inc -O3 -c src/filter.cpp -o obj/filter.o g++ ./obj/stats.o ./obj/htmlreporter.o ./obj/jsonreporter.o ./obj/sequence.o ./obj/basecorrector.o ./obj/unittest.o ./obj/threadconfig.o ./obj/filterresult.o ./obj/read.o ./obj/overlapanalysis.o ./obj/processor.o ./obj/adaptertrimmer.o ./obj/writer.o ./obj/umiprocessor.o ./obj/peprocessor.o ./obj/polyx.o ./obj/duplicate.o ./obj/main.o ./obj/nucleotidetree.o ./obj/evaluator.o ./obj/options.o ./obj/fastqreader.o ./obj/writerthread.o ./obj/seprocessor.o ./obj/filter.o -o fastp -Wl,-z,relro -Wl,-z,now -lz -lpthread make[2]: Leaving directory '/build/fastp-0.19.6+dfsg' help2man --no-discard-stderr --name="ultra-fast all-in-one FASTQ preprocessor" ./fastp > fastp.1 make[1]: Leaving directory '/build/fastp-0.19.6+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/fastp-0.19.6+dfsg' dh_installman fastp.1 make[1]: Leaving directory '/build/fastp-0.19.6+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastp' in '../fastp_0.19.6+dfsg-1_arm64.deb'. dpkg-deb: building package 'fastp-dbgsym' in '../fastp-dbgsym_0.19.6+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fastp_0.19.6+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24316 and its subdirectories I: Current time: Fri Nov 12 21:20:48 -12 2021 I: pbuilder-time-stamp: 1636795248 Sun Oct 11 02:57:51 UTC 2020 I: 1st build successful. Starting 2nd build on remote node codethink-sled14-arm64.debian.net. Sun Oct 11 02:57:51 UTC 2020 I: Preparing to do remote build '2' on codethink-sled14-arm64.debian.net. Sun Oct 11 02:59:14 UTC 2020 I: Deleting $TMPDIR on codethink-sled14-arm64.debian.net. Sun Oct 11 02:59:15 UTC 2020 I: fastp_0.19.6+dfsg-1_arm64.changes: Format: 1.8 Date: Fri, 18 Jan 2019 22:24:34 +0100 Source: fastp Binary: fastp fastp-dbgsym Architecture: arm64 Version: 0.19.6+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: fastp - Ultra-fast all-in-one FASTQ preprocessor Changes: fastp (0.19.6+dfsg-1) unstable; urgency=medium . * New upstream release. * Remove patches, accepted upstream. * Add patch to inject compiler flags. * Standards-Version: 4.3.0. * Bump debhelper compat to 12. Checksums-Sha1: a7d846b0363a112f6fa7e6582c01fd4df4647bc4 2436428 fastp-dbgsym_0.19.6+dfsg-1_arm64.deb c9a1191297fe4b40fd06d73e746658b0f541419f 4704 fastp_0.19.6+dfsg-1_arm64.buildinfo b82c968eb11a7eaa3095b009ae1b0ea685ee3032 141820 fastp_0.19.6+dfsg-1_arm64.deb Checksums-Sha256: 05f5b932f2c0086beb96931f953e846d18606c50a34cd0d3024af79d50dd893f 2436428 fastp-dbgsym_0.19.6+dfsg-1_arm64.deb c8fc90b3698a064b7c475e7f3eb6d06453c108ba8732913b082eec41e3e0741c 4704 fastp_0.19.6+dfsg-1_arm64.buildinfo 93a18325f5833de8579c5c98049719fe0f247a18ed038e0836d222483e322375 141820 fastp_0.19.6+dfsg-1_arm64.deb Files: 32a3ebe8de36ec6e81619df591d7e9ea 2436428 debug optional fastp-dbgsym_0.19.6+dfsg-1_arm64.deb 03acc2939f2fef555057d5e7220c82db 4704 science optional fastp_0.19.6+dfsg-1_arm64.buildinfo 890bc9313f3dce670792481a8611f335 141820 science optional fastp_0.19.6+dfsg-1_arm64.deb Sun Oct 11 02:59:16 UTC 2020 I: diffoscope 160 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.FvxK03S7wU/fastp_0.19.6+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.FvxK03S7wU/fastp_0.19.6+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.FvxK03S7wU/fastp_0.19.6+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.FvxK03S7wU/b1/fastp_0.19.6+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.FvxK03S7wU/b2/fastp_0.19.6+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.269s) 0.269s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.050s) 0.050s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Oct 11 02:59:19 UTC 2020 I: diffoscope 160 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 11 02:59:19 UTC 2020 I: fastp from buster built successfully and reproducibly on arm64. Sun Oct 11 02:59:20 UTC 2020 I: Submitting .buildinfo files to external archives: Sun Oct 11 02:59:20 UTC 2020 I: Submitting 8.0K b1/fastp_0.19.6+dfsg-1_arm64.buildinfo.asc Sun Oct 11 02:59:21 UTC 2020 I: Submitting 8.0K b2/fastp_0.19.6+dfsg-1_arm64.buildinfo.asc Sun Oct 11 02:59:23 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 11 02:59:23 UTC 2020 I: Done submitting .buildinfo files. Sun Oct 11 02:59:23 UTC 2020 I: Removing signed fastp_0.19.6+dfsg-1_arm64.buildinfo.asc files: removed './b1/fastp_0.19.6+dfsg-1_arm64.buildinfo.asc' removed './b2/fastp_0.19.6+dfsg-1_arm64.buildinfo.asc'