Sat Jul 17 11:33:26 UTC 2021 I: starting to build voronota/buster/amd64 on jenkins on '2021-07-17 11:33' Sat Jul 17 11:33:26 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/66686/console.log Sat Jul 17 11:33:26 UTC 2021 I: Downloading source for buster/voronota=1.19.2352-1 --2021-07-17 11:33:27-- http://deb.debian.org/debian/pool/main/v/voronota/voronota_1.19.2352-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2049 (2.0K) Saving to: ‘voronota_1.19.2352-1.dsc’ 0K .. 100% 171M=0s 2021-07-17 11:33:27 (171 MB/s) - ‘voronota_1.19.2352-1.dsc’ saved [2049/2049] Sat Jul 17 11:33:27 UTC 2021 I: voronota_1.19.2352-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: voronota Binary: voronota Architecture: any Version: 1.19.2352-1 Maintainer: Debian Science Maintainers Uploaders: Andrius Merkys Homepage: https://bitbucket.org/kliment/voronota Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/science-team/voronota Vcs-Git: https://salsa.debian.org/science-team/voronota.git Testsuite: autopkgtest Testsuite-Triggers: perl Build-Depends: debhelper (>= 11) Package-List: voronota deb science optional arch=any Checksums-Sha1: 309865f8772327ebefe457ed89e5eae171c11c7e 3843005 voronota_1.19.2352.orig.tar.gz eeef911952c0bddeae8799d6e2eaca6e85af4386 4540 voronota_1.19.2352-1.debian.tar.xz Checksums-Sha256: 877d9db52b2c50ca1289a8b691af51b5123086c4a0ea75e6d9779ef478b71934 3843005 voronota_1.19.2352.orig.tar.gz 26305678954d0acb3c4f01fc84b8da8c887e562bef13b4fc4625b25c2d4acc33 4540 voronota_1.19.2352-1.debian.tar.xz Files: 3db1f7c7efd5f486bf59a7d59e40de17 3843005 voronota_1.19.2352.orig.tar.gz 0a554b538e94f3de3d5edb7a5e64f5a6 4540 voronota_1.19.2352-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJNBAEBCgA3FiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAlvb9uMZHGFuZHJpdXMu bWVya3lzQGdtYWlsLmNvbQAKCRDl9D+cJzTyh8HfD/9wR4F5uSG5dFkbTxldWNkP +rywLxzzUWsAFRV8vWpFs1NtUYPXthf282wvgI0Lz/EQJfHKaWI+eGB5oHTbckO2 Ba+S6DiXg4FPZVZdvHaBgmCmSFbQ/BzWMsEk6Hf+xmheFruBCqYzquIMFELcd/Bw /4wIw6I8xKXHTFTiblD2zUaQijX9ru25swxAQeXx9iwMwNkgob0S/IPglUMxhlas qedHXQgbUw+pulWhlan+DZp2TqwenfYGA2qVohC92PXjwAFrhZ0HM6W8sYiOLeav TctqNmbOJLLdL7CUEg5u5xLnzMu0TXmtfkVvxUyAXuSDdi6nc7i7uEyewOraxh3M VqE5FXO0qWLdiNQ4j6+K37GG5kKZakexuV4kNyhfH6u4sIgwstSKAu32mDnCoXEd znKhMzgAEb8b2l/TZHxcqj5tGN1uX25BNkO6hAiofKUc0rlq+Lm8UVQQKh3q7sZ+ zrAu5zKwMjqTscDmpcl+tsy4J6cQsRqEvC/wIUv6F0M4TfpklOE+YRbkADHoeNJ5 7ZYEsQWTT4TIiKnnHUiPB39vn9TuAuAHK5HaikF6+pcNV51OGXLcjKpxZLE1solU PA9FhnTc8jQvI5pt9sAaHCJTmjXH0m4WfI/Bq5+S4N2mijcxdRmq11owYS0IA2oV 6h/RTtxcNEBXHVPg/rp3Mw== =pIPJ -----END PGP SIGNATURE----- Sat Jul 17 11:33:27 UTC 2021 I: Checking whether the package is not for us Sat Jul 17 11:33:27 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Jul 17 11:33:27 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Jul 17 11:38:53 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 19 05:56:30 -12 2022 I: pbuilder-time-stamp: 1660931790 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [voronota_1.19.2352-1.dsc] I: copying [./voronota_1.19.2352.orig.tar.gz] I: copying [./voronota_1.19.2352-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 1 19:04:03 2018 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "andrius.merkys@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./voronota_1.19.2352-1.dsc dpkg-source: info: extracting voronota in voronota-1.19.2352 dpkg-source: info: unpacking voronota_1.19.2352.orig.tar.gz dpkg-source: info: unpacking voronota_1.19.2352-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/37712/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1f2acb568a6d4a3bbda451d3e5c6985a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='37712' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.tpQpfgixI6/pbuilderrc_wxKz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.tpQpfgixI6/b1 --logfile b1/build.log voronota_1.19.2352-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 9 02:47 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/37712/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 69.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Fetched 19.0 MB in 1s (29.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... 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Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/voronota-1.19.2352/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package voronota dpkg-buildpackage: info: source version 1.19.2352-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf Makefile.am:2: warning: source file 'src/mode_draw_values_bitmap.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. Makefile.am:2: warning: source file 'src/mode_run_script.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_simulate_potential_for_membrane_proteins.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_rotational_optimization_demo.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_plot_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_score_scores.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_contacts_solvation_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_compare_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_score_contacts_potential.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_score_contacts_potentials_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_contacts_depth_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_expand_descriptors.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_calculate_vertices.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_write_qa_scores_in_casp_format.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_vectorize_points.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_score_contacts_quality.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_score_contacts_global_energy_by_cuts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_vectorize_contact_environments.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_balls_sequences_pairings_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_contacts_simulating_unfolding.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_score_contacts_energy.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_vectorize_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_write_balls_to_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_score_contacts_energy_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_balls.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_balls_clashes.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_calculate_vertices_in_parallel.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_demo_ses.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_demo_polygon_triangulation.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_place_membrane.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_draw_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_get_balls_from_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_draw_balls.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_calculate_mock_solvent.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_calculate_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_demo_hypercut.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_query_balls_distances.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_reprint_hbp.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_calculate_path_centralities.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/main.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_compare_files_as_sets.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/mode_split_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j16 make[1]: Entering directory '/build/voronota-1.19.2352' g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_values_bitmap.o `test -f 'src/mode_draw_values_bitmap.cpp' || echo './'`src/mode_draw_values_bitmap.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_run_script.o `test -f 'src/mode_run_script.cpp' || echo './'`src/mode_run_script.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_simulate_potential_for_membrane_proteins.o `test -f 'src/mode_simulate_potential_for_membrane_proteins.cpp' || echo './'`src/mode_simulate_potential_for_membrane_proteins.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_rotational_optimization_demo.o `test -f 'src/mode_rotational_optimization_demo.cpp' || echo './'`src/mode_rotational_optimization_demo.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_plot_contacts.o `test -f 'src/mode_plot_contacts.cpp' || echo './'`src/mode_plot_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_scores.o `test -f 'src/mode_score_scores.cpp' || echo './'`src/mode_score_scores.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_solvation_values.o `test -f 'src/mode_query_contacts_solvation_values.cpp' || echo './'`src/mode_query_contacts_solvation_values.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_compare_contacts.o `test -f 'src/mode_compare_contacts.cpp' || echo './'`src/mode_compare_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_potential.o `test -f 'src/mode_score_contacts_potential.cpp' || echo './'`src/mode_score_contacts_potential.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_potentials_stats.o `test -f 'src/mode_score_contacts_potentials_stats.cpp' || echo './'`src/mode_score_contacts_potentials_stats.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts.o `test -f 'src/mode_query_contacts.cpp' || echo './'`src/mode_query_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_depth_values.o `test -f 'src/mode_query_contacts_depth_values.cpp' || echo './'`src/mode_query_contacts_depth_values.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_expand_descriptors.o `test -f 'src/mode_expand_descriptors.cpp' || echo './'`src/mode_expand_descriptors.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_vertices.o `test -f 'src/mode_calculate_vertices.cpp' || echo './'`src/mode_calculate_vertices.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_write_qa_scores_in_casp_format.o `test -f 'src/mode_write_qa_scores_in_casp_format.cpp' || echo './'`src/mode_write_qa_scores_in_casp_format.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_points.o `test -f 'src/mode_vectorize_points.cpp' || echo './'`src/mode_vectorize_points.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_quality.o `test -f 'src/mode_score_contacts_quality.cpp' || echo './'`src/mode_score_contacts_quality.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_global_energy_by_cuts.o `test -f 'src/mode_score_contacts_global_energy_by_cuts.cpp' || echo './'`src/mode_score_contacts_global_energy_by_cuts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_contact_environments.o `test -f 'src/mode_vectorize_contact_environments.cpp' || echo './'`src/mode_vectorize_contact_environments.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_sequences_pairings_stats.o `test -f 'src/mode_query_balls_sequences_pairings_stats.cpp' || echo './'`src/mode_query_balls_sequences_pairings_stats.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_simulating_unfolding.o `test -f 'src/mode_query_contacts_simulating_unfolding.cpp' || echo './'`src/mode_query_contacts_simulating_unfolding.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_energy.o `test -f 'src/mode_score_contacts_energy.cpp' || echo './'`src/mode_score_contacts_energy.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_contacts.o `test -f 'src/mode_vectorize_contacts.cpp' || echo './'`src/mode_vectorize_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_write_balls_to_atoms_file.o `test -f 'src/mode_write_balls_to_atoms_file.cpp' || echo './'`src/mode_write_balls_to_atoms_file.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_energy_stats.o `test -f 'src/mode_score_contacts_energy_stats.cpp' || echo './'`src/mode_score_contacts_energy_stats.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls.o `test -f 'src/mode_query_balls.cpp' || echo './'`src/mode_query_balls.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_clashes.o `test -f 'src/mode_query_balls_clashes.cpp' || echo './'`src/mode_query_balls_clashes.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_vertices_in_parallel.o `test -f 'src/mode_calculate_vertices_in_parallel.cpp' || echo './'`src/mode_calculate_vertices_in_parallel.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_ses.o `test -f 'src/mode_demo_ses.cpp' || echo './'`src/mode_demo_ses.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_polygon_triangulation.o `test -f 'src/mode_demo_polygon_triangulation.cpp' || echo './'`src/mode_demo_polygon_triangulation.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_place_membrane.o `test -f 'src/mode_place_membrane.cpp' || echo './'`src/mode_place_membrane.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_contacts.o `test -f 'src/mode_draw_contacts.cpp' || echo './'`src/mode_draw_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_get_balls_from_atoms_file.o `test -f 'src/mode_get_balls_from_atoms_file.cpp' || echo './'`src/mode_get_balls_from_atoms_file.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_balls.o `test -f 'src/mode_draw_balls.cpp' || echo './'`src/mode_draw_balls.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_mock_solvent.o `test -f 'src/mode_calculate_mock_solvent.cpp' || echo './'`src/mode_calculate_mock_solvent.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_contacts.o `test -f 'src/mode_calculate_contacts.cpp' || echo './'`src/mode_calculate_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_hypercut.o `test -f 'src/mode_demo_hypercut.cpp' || echo './'`src/mode_demo_hypercut.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_distances.o `test -f 'src/mode_query_balls_distances.cpp' || echo './'`src/mode_query_balls_distances.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_reprint_hbp.o `test -f 'src/mode_reprint_hbp.cpp' || echo './'`src/mode_reprint_hbp.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_path_centralities.o `test -f 'src/mode_calculate_path_centralities.cpp' || echo './'`src/mode_calculate_path_centralities.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o `test -f 'src/main.cpp' || echo './'`src/main.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_compare_files_as_sets.o `test -f 'src/mode_compare_files_as_sets.cpp' || echo './'`src/mode_compare_files_as_sets.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.19.2352\" -DPACKAGE_STRING=\"voronota\ 1.19.2352\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.19.2352\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_split_atoms_file.o `test -f 'src/mode_split_atoms_file.cpp' || echo './'`src/mode_split_atoms_file.cpp g++ -g -O2 -ffile-prefix-map=/build/voronota-1.19.2352=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o voronota mode_draw_values_bitmap.o mode_run_script.o mode_simulate_potential_for_membrane_proteins.o mode_rotational_optimization_demo.o mode_plot_contacts.o mode_score_scores.o mode_query_contacts_solvation_values.o mode_compare_contacts.o mode_score_contacts_potential.o mode_score_contacts_potentials_stats.o mode_query_contacts.o mode_query_contacts_depth_values.o mode_expand_descriptors.o mode_calculate_vertices.o mode_write_qa_scores_in_casp_format.o mode_vectorize_points.o mode_score_contacts_quality.o mode_score_contacts_global_energy_by_cuts.o mode_vectorize_contact_environments.o mode_query_balls_sequences_pairings_stats.o mode_query_contacts_simulating_unfolding.o mode_score_contacts_energy.o mode_vectorize_contacts.o mode_write_balls_to_atoms_file.o mode_score_contacts_energy_stats.o mode_query_balls.o mode_query_balls_clashes.o mode_calculate_vertices_in_parallel.o mode_demo_ses.o mode_demo_polygon_triangulation.o mode_place_membrane.o mode_draw_contacts.o mode_get_balls_from_atoms_file.o mode_draw_balls.o mode_calculate_mock_solvent.o mode_calculate_contacts.o mode_demo_hypercut.o mode_query_balls_distances.o mode_reprint_hbp.o mode_calculate_path_centralities.o main.o mode_compare_files_as_sets.o mode_split_atoms_file.o make[1]: Leaving directory '/build/voronota-1.19.2352' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j16 install DESTDIR=/build/voronota-1.19.2352/debian/voronota AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/voronota-1.19.2352' make[2]: Entering directory '/build/voronota-1.19.2352' /bin/mkdir -p '/build/voronota-1.19.2352/debian/voronota/usr/bin' /bin/mkdir -p '/build/voronota-1.19.2352/debian/voronota/usr/bin' /bin/mkdir -p '/build/voronota-1.19.2352/debian/voronota/usr/share/man/man1' /usr/bin/install -c voronota '/build/voronota-1.19.2352/debian/voronota/usr/bin' /usr/bin/install -c voronota-resources voronota-voromqa voronota-contacts voronota-cadscore voronota-volumes '/build/voronota-1.19.2352/debian/voronota/usr/bin' /usr/bin/install -c -m 644 'voronota.man' '/build/voronota-1.19.2352/debian/voronota/usr/share/man/man1/voronota.1' make[2]: Leaving directory '/build/voronota-1.19.2352' make[1]: Leaving directory '/build/voronota-1.19.2352' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'voronota' in '../voronota_1.19.2352-1_amd64.deb'. dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.19.2352-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../voronota_1.19.2352-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/37712 and its subdirectories I: Current time: Fri Aug 19 06:01:51 -12 2022 I: pbuilder-time-stamp: 1660932111 Sat Jul 17 11:38:53 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sat Jul 17 11:38:53 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sat Jul 17 11:41:35 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sat Jul 17 11:41:36 UTC 2021 I: voronota_1.19.2352-1_amd64.changes: Format: 1.8 Date: Wed, 31 Oct 2018 11:22:41 -0400 Source: voronota Binary: voronota voronota-dbgsym Architecture: amd64 Version: 1.19.2352-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: voronota - Voronoi diagram-based tool to find atom contacts Changes: voronota (1.19.2352-1) unstable; urgency=medium . * New upstream version 1.19.2352 Checksums-Sha1: 7020c557031f7d0f1983571680cf13cea0f8d03c 25495692 voronota-dbgsym_1.19.2352-1_amd64.deb 5e5e29ed51d88836101ca05a7d906e1f28d1bd7d 4717 voronota_1.19.2352-1_amd64.buildinfo 173cf0d2b21e6f11211a2368989976d2bcb450d2 1707404 voronota_1.19.2352-1_amd64.deb Checksums-Sha256: 268079f4b084085422f59aadade11473d84993c42f5e5c65a3d0d6cb826386ca 25495692 voronota-dbgsym_1.19.2352-1_amd64.deb 52c404e6d1d253a5b13d798bf5575ebccc2576c673fdbf45c0e81bcc0f5174c3 4717 voronota_1.19.2352-1_amd64.buildinfo 4168bb0960c70429c302da5b86e284c3502c648317ce36c34f2a854bc7ec9831 1707404 voronota_1.19.2352-1_amd64.deb Files: 1d71662e5e156d95bac176f319e423b1 25495692 debug optional voronota-dbgsym_1.19.2352-1_amd64.deb 3b238bf9a67446f889ce95bc46a0727b 4717 science optional voronota_1.19.2352-1_amd64.buildinfo 0d2d8376ae7e485e7f887029d3d74002 1707404 science optional voronota_1.19.2352-1_amd64.deb Sat Jul 17 11:41:37 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.tpQpfgixI6/voronota_1.19.2352-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.tpQpfgixI6/voronota_1.19.2352-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.tpQpfgixI6/voronota_1.19.2352-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.tpQpfgixI6/b1/voronota_1.19.2352-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.tpQpfgixI6/b2/voronota_1.19.2352-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.523s) 0.523s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.305s) 0.304s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jul 17 11:41:39 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 17 11:41:39 UTC 2021 I: voronota from buster built successfully and reproducibly on amd64. Sat Jul 17 11:41:40 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jul 17 11:41:40 UTC 2021 I: Submitting 8.0K b1/voronota_1.19.2352-1_amd64.buildinfo.asc Sat Jul 17 11:41:41 UTC 2021 I: Submitting 8.0K b2/voronota_1.19.2352-1_amd64.buildinfo.asc Sat Jul 17 11:41:42 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 17 11:41:42 UTC 2021 I: Done submitting .buildinfo files. Sat Jul 17 11:41:42 UTC 2021 I: Removing signed voronota_1.19.2352-1_amd64.buildinfo.asc files: removed './b1/voronota_1.19.2352-1_amd64.buildinfo.asc' removed './b2/voronota_1.19.2352-1_amd64.buildinfo.asc'