Tue Dec 8 19:20:46 UTC 2020 I: starting to build tnseq-transit/buster/amd64 on jenkins on '2020-12-08 19:20' Tue Dec 8 19:20:46 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_21/38797/console.log Tue Dec 8 19:20:46 UTC 2020 I: Downloading source for buster/tnseq-transit=2.3.4-1 --2020-12-08 19:20:46-- http://deb.debian.org/debian/pool/main/t/tnseq-transit/tnseq-transit_2.3.4-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2128 (2.1K) Saving to: ‘tnseq-transit_2.3.4-1.dsc’ 0K .. 100% 224M=0s 2020-12-08 19:20:46 (224 MB/s) - ‘tnseq-transit_2.3.4-1.dsc’ saved [2128/2128] Tue Dec 8 19:20:46 UTC 2020 I: tnseq-transit_2.3.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: tnseq-transit Binary: tnseq-transit Architecture: any Version: 2.3.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://saclab.tamu.edu/essentiality/transit/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/tnseq-transit Vcs-Git: https://salsa.debian.org/med-team/tnseq-transit.git Build-Depends: debhelper (>= 12~), dh-python, python-dev, python-setuptools, python-numpy, python-scipy, python-pil, python-matplotlib, python-statsmodels, bwa Package-List: tnseq-transit deb science optional arch=any Checksums-Sha1: df5d8eccfe1251f1dddd94000be936156ba8c1c6 18607360 tnseq-transit_2.3.4.orig.tar.gz 8fe722226bdbb09566717bc6f3d4fb00dc091292 3232 tnseq-transit_2.3.4-1.debian.tar.xz Checksums-Sha256: f16a8310d3afe3b4bd639ce6accf5012826e7ea2c79d29f63163eb3fd5588d5a 18607360 tnseq-transit_2.3.4.orig.tar.gz 1a335de18ef0c52a67007ec7d36d0525168434848020e5f4b9cdfd663f58c9dd 3232 tnseq-transit_2.3.4-1.debian.tar.xz Files: 14e4221e1cf354b7b96adfc2d3c7b005 18607360 tnseq-transit_2.3.4.orig.tar.gz a8e8959b3594e9f6fdc1212ac48fd01d 3232 tnseq-transit_2.3.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxRvnoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLCA/+LV1Fwajjz6FzKvEzHT1FidfqVnDo8/H9 R+xFc0sGXntLZ6cof7xuGwxzr5UVGBA2YX6lsAIe9ihZHgdY+J/Prn5S1qUXxRxM k07SIO3djkiuHXO/8yxSGwiwn2Gg7A2LEFmz0nmYq+XpiC2OWxR8FrZFttvwbSH3 VGP3Xg7aj5jP+haAwpAaTzu9nB7Ql3ZRuUp8uGQKOXh8POv6bWFcT7zmJS5KVXgY TQzVEaMnZjssIXn6FtDLFQkq8IZpqzI9wmzQM2VlO90TBhtCAMQn9+axo61IQXL+ 6tJyhGHYRAAXeyEuj4bbQPRvvK6L2o/jPwT9IpFD0Zo7pTbK0nMEca8c0M0cwsh+ dMse2WKdvT3kxjFt/53BDWQD8PM3NfUDbY4Gg6df5mBRmg9i+zq3UmgEIxilSRem LxPnfORw6x4xcTVYCZHkzZd1lsuUGuThAkaVM+CqWrLIFUhTr95/1t3pXciONq3Z b4pH21MUIVmusluCtsgFs1+iBz8i1PMI/dljFMIFfbtM2PRedxKA4e2waQQzWNu0 3M6JwvlZUSF20nG/W2AJd0tymNoa8DdYnv+S5Nq7yePqJpoCPtqNOTXSAhhN2wlb fLid0tl88HDCKMT1aUlLhs+nBnG8dHv8O8wELIHJ8Bz0kcNCcomNY8gDT7VM/sRN GPZ03hJHH+k= =Iycf -----END PGP SIGNATURE----- Tue Dec 8 19:20:46 UTC 2020 I: Checking whether the package is not for us Tue Dec 8 19:20:46 UTC 2020 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Dec 8 19:20:46 UTC 2020 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Dec 8 19:22:24 UTC 2020 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 8 07:20:48 -12 2020 I: pbuilder-time-stamp: 1607455248 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [tnseq-transit_2.3.4-1.dsc] I: copying [./tnseq-transit_2.3.4.orig.tar.gz] I: copying [./tnseq-transit_2.3.4-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 30 03:10:50 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tnseq-transit_2.3.4-1.dsc dpkg-source: info: extracting tnseq-transit in tnseq-transit-2.3.4 dpkg-source: info: unpacking tnseq-transit_2.3.4.orig.tar.gz dpkg-source: info: unpacking tnseq-transit_2.3.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/62412/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c1f33ff8412140bbb0db01a017794396' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='62412' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.YfO6O5eq9A/pbuilderrc_sV7F --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.YfO6O5eq9A/b1 --logfile b1/build.log tnseq-transit_2.3.4-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 6 20:24 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/62412/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-python, python-dev, python-setuptools, python-numpy, python-scipy, python-pil, python-matplotlib, python-statsmodels, bwa dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-scipy; however: Package python-scipy is not installed. pbuilder-satisfydepends-dummy depends on python-pil; however: Package python-pil is not installed. pbuilder-satisfydepends-dummy depends on python-matplotlib; however: Package python-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python-statsmodels; however: Package python-statsmodels is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpng16-16{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-backports.functools-lru-cache{a} python-cycler{a} python-dateutil{a} python-decorator{a} python-dev{a} python-kiwisolver{a} python-matplotlib{a} python-matplotlib2-data{a} python-minimal{a} python-numpy{a} python-pandas{a} python-pandas-lib{a} python-patsy{a} python-pil{a} python-pkg-resources{a} python-pyparsing{a} python-scipy{a} python-setuptools{a} python-six{a} python-statsmodels{a} python-statsmodels-lib{a} python-subprocess32{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} ttf-bitstream-vera{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx python-bs4 python-cvxopt python-html5lib python-joblib python-lxml python-numexpr python-olefile python-openpyxl python-tables python-tk python-xlrd python-xlwt shared-mime-info wget xdg-user-dirs 0 packages upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After unpacking 330 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u3 [1538 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u2 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u2 [1731 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u2 [1732 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u2 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 fonts-lyx all 2.3.2-1 [199 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 76 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u1 [271 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2 [87.5 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2 [97.7 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get: 83 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 python-cycler all 0.10.0-1 [7448 B] Get: 85 http://deb.debian.org/debian buster/main amd64 python-dateutil all 2.7.3-3 [76.8 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 python-decorator all 4.3.0-1.1 [14.4 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 89 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 90 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 python-kiwisolver amd64 1.0.1-2+b1 [67.3 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 python-tz all 2019.1-1 [33.6 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 python-subprocess32 amd64 3.5.3-1 [29.9 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 python-matplotlib amd64 2.2.3-6 [5073 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 python-pandas-lib amd64 0.23.3+dfsg-3 [3430 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 python-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 python-patsy all 0.5.0+git13-g54dcf7b-1 [172 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 python-pil amd64 5.4.1-2+deb10u2 [395 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 python-scipy amd64 1.1.0-7 [10.1 MB] Get: 104 http://deb.debian.org/debian buster/main amd64 python-setuptools all 40.8.0-1 [382 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 python-statsmodels-lib amd64 0.8.0-9 [370 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 python-statsmodels all 0.8.0-9 [7183 kB] Fetched 105 MB in 2s (43.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u2_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u2) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21357 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../06-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... 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Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-2+deb10u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../21-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../22-libxml2_2.9.4+dfsg1-7+deb10u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/tnseq-transit-2.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package tnseq-transit dpkg-buildpackage: info: source version 2.3.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/tnseq-transit-2.3.4' if [ -e tests_invalid_data/H37Rv.fna ] ; then \ mv tests_invalid_data/H37Rv.fna tests ; \ rmdir tests_invalid_data ; \ fi dh_auto_clean I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it make[1]: Leaving directory '/build/tnseq-transit-2.3.4' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python2 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/tnseq-transit-2.3.4' mkdir -p tests_invalid_data mv tests/H37Rv.fna tests_invalid_data dh_auto_configure I: pybuild base:217: python2.7 setup.py config running config make[1]: Leaving directory '/build/tnseq-transit-2.3.4' dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/view_trash.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/trash.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/transit_tools.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/transit_gui.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/tnseq_tools.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/stat_tools.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/qcDisplay.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/norm_tools.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/images.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/fileDisplay.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/draw_trash.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/__main__.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit copying src/pytransit/__init__.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit creating /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp copying src/pytpp/tpp_tools.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp copying src/pytpp/tpp_gui.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp copying src/pytpp/__main__.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp copying src/pytpp/__init__.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp creating /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export copying src/pytransit/export/mean_counts.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export copying src/pytransit/export/igv.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export copying src/pytransit/export/combined_wig.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export copying src/pytransit/export/base.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export copying src/pytransit/export/__init__.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export creating /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/utest.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/tnseq_stats.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/tn5gaps.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/resampling.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/normalize.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/norm.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/hmm.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/gumbel.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/griffin.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/gi.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/example.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/binomial.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/base.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/anova.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis copying src/pytransit/analysis/__init__.py -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis running egg_info creating tnseq_transit.egg-info writing requirements to tnseq_transit.egg-info/requires.txt writing tnseq_transit.egg-info/PKG-INFO writing top-level names to tnseq_transit.egg-info/top_level.txt writing dependency_links to tnseq_transit.egg-info/dependency_links.txt writing entry points to tnseq_transit.egg-info/entry_points.txt writing manifest file 'tnseq_transit.egg-info/SOURCES.txt' reading manifest file 'tnseq_transit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html' warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static' writing manifest file 'tnseq_transit.egg-info/SOURCES.txt' creating /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/GO_associated_Rvs.csv -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/cholesterol_glycerol_combined.dat -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/glycerol_H37Rv_merged.wig -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data copying src/pytransit/data/samples_metadata_cg.txt -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data creating /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/BCG.fna -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/BCG.prot_table -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/H37Rv.fna -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/H37Rv.prot_table -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/H37RvBD.fna -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/H37RvBD.prot_table -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/H37RvMA2.fna -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/H37RvMA2.prot_table -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/genomes.html -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/mc2_155_tamu.fna -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build; python2.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/tnseq-transit-2.3.4/debian/tnseq-transit running install running build running build_py running egg_info writing requirements to tnseq_transit.egg-info/requires.txt writing tnseq_transit.egg-info/PKG-INFO writing top-level names to tnseq_transit.egg-info/top_level.txt writing dependency_links to tnseq_transit.egg-info/dependency_links.txt writing entry points to tnseq_transit.egg-info/entry_points.txt reading manifest file 'tnseq_transit.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html' warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules' warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static' writing manifest file 'tnseq_transit.egg-info/SOURCES.txt' running install_lib creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7 creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp/__init__.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp/__main__.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp/tpp_gui.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytpp/tpp_tools.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/mc2_155_tamu.prot_table -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/mc2_155_tamu.fna -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/genomes.html -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/H37RvMA2.prot_table -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/H37RvMA2.fna -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/H37RvBD.prot_table -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/H37RvBD.fna -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/H37Rv.prot_table -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/H37Rv.fna -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/BCG.prot_table -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/genomes/BCG.fna -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/samples_metadata_cg.txt -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/glycerol_H37Rv_merged.wig -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/cholesterol_glycerol_combined.dat -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/data/GO_associated_Rvs.csv -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/__init__.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/anova.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/base.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/binomial.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/example.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/gi.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/griffin.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/gumbel.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/hmm.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/norm.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/normalize.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/pathway_enrichment.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/rankproduct.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/resampling.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/tn5gaps.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/tnseq_stats.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/analysis/utest.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis creating /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export/__init__.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export/base.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export/combined_wig.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export/igv.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/export/mean_counts.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/__init__.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/__main__.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/draw_trash.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/fileDisplay.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/images.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/norm_tools.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/qcDisplay.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/stat_tools.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/tnseq_tools.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/transit_gui.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/transit_tools.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/trash.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit copying /build/tnseq-transit-2.3.4/.pybuild/cpython2_2.7/build/pytransit/view_trash.py -> /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp/__init__.py to __init__.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp/__main__.py to __main__.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp/tpp_gui.py to tpp_gui.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp/tpp_tools.py to tpp_tools.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/__init__.py to __init__.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/anova.py to anova.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/base.py to base.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/binomial.py to binomial.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/example.py to example.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/gi.py to gi.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/griffin.py to griffin.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/gumbel.py to gumbel.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/hmm.py to hmm.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/norm.py to norm.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/normalize.py to normalize.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/resampling.py to resampling.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/tn5gaps.py to tn5gaps.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis/utest.py to utest.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export/__init__.py to __init__.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export/base.py to base.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export/combined_wig.py to combined_wig.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export/igv.py to igv.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export/mean_counts.py to mean_counts.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/__init__.py to __init__.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/__main__.py to __main__.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/draw_trash.py to draw_trash.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/fileDisplay.py to fileDisplay.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/images.py to images.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/norm_tools.py to norm_tools.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/qcDisplay.py to qcDisplay.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/stat_tools.py to stat_tools.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/transit_gui.py to transit_gui.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/transit_tools.py to transit_tools.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/trash.py to trash.pyc byte-compiling /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/view_trash.py to view_trash.pyc running install_egg_info Copying tnseq_transit.egg-info to /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/lib/python2.7/dist-packages/tnseq_transit-2.3.4.egg-info Skipping SOURCES.txt running install_scripts Installing transit script to /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/bin Installing tpp script to /build/tnseq-transit-2.3.4/debian/tnseq-transit/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/tnseq-transit-2.3.4' dh_install mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp make[1]: Leaving directory '/build/tnseq-transit-2.3.4' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild I: dh_python2 tools:114: replacing shebang in debian/tnseq-transit/usr/bin/transit-tpp I: dh_python2 tools:114: replacing shebang in debian/tnseq-transit/usr/bin/transit dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package tnseq-transit: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_2.3.4-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tnseq-transit_2.3.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/62412 and its subdirectories I: Current time: Tue Dec 8 07:22:23 -12 2020 I: pbuilder-time-stamp: 1607455343 Tue Dec 8 19:22:24 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Tue Dec 8 19:22:24 UTC 2020 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Tue Dec 8 19:23:55 UTC 2020 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Tue Dec 8 19:23:55 UTC 2020 I: tnseq-transit_2.3.4-1_amd64.changes: Format: 1.8 Date: Wed, 30 Jan 2019 15:54:42 +0100 Source: tnseq-transit Binary: tnseq-transit Architecture: amd64 Version: 2.3.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tnseq-transit - statistical calculations of essentiality of genes or genomic regi Changes: tnseq-transit (2.3.4-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 Checksums-Sha1: d0c431e33dcf20f9d1a87a2cd82742c0d4c92458 6811 tnseq-transit_2.3.4-1_amd64.buildinfo 18419a757840956036b7bc0a18fa6b1ddbd13150 6057492 tnseq-transit_2.3.4-1_amd64.deb Checksums-Sha256: 14b0919bd94bfa8416c1ab07837a4a3c4c13375e29626cfc951fd80c0d6aa763 6811 tnseq-transit_2.3.4-1_amd64.buildinfo 1cc325c79ff88a2117e384a830150e08812e6be14ffa11e7ffd89139d420ae4a 6057492 tnseq-transit_2.3.4-1_amd64.deb Files: 4b0cc1a018c002d7d95aa8b916289982 6811 science optional tnseq-transit_2.3.4-1_amd64.buildinfo 74128ebd108965450eb49767d9c15607 6057492 science optional tnseq-transit_2.3.4-1_amd64.deb Tue Dec 8 19:23:56 UTC 2020 I: diffoscope 162 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.YfO6O5eq9A/tnseq-transit_2.3.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.YfO6O5eq9A/tnseq-transit_2.3.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.YfO6O5eq9A/tnseq-transit_2.3.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.YfO6O5eq9A/b1/tnseq-transit_2.3.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.YfO6O5eq9A/b2/tnseq-transit_2.3.4-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.401s) 0.401s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.102s) 0.102s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Dec 8 19:23:58 UTC 2020 I: diffoscope 162 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 8 19:23:58 UTC 2020 I: tnseq-transit from buster built successfully and reproducibly on amd64. Tue Dec 8 19:24:00 UTC 2020 I: Submitting .buildinfo files to external archives: Tue Dec 8 19:24:00 UTC 2020 I: Submitting 8.0K b1/tnseq-transit_2.3.4-1_amd64.buildinfo.asc Tue Dec 8 19:24:01 UTC 2020 I: Submitting 8.0K b2/tnseq-transit_2.3.4-1_amd64.buildinfo.asc Tue Dec 8 19:24:03 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 8 19:24:03 UTC 2020 I: Done submitting .buildinfo files. Tue Dec 8 19:24:03 UTC 2020 I: Removing signed tnseq-transit_2.3.4-1_amd64.buildinfo.asc files: removed './b1/tnseq-transit_2.3.4-1_amd64.buildinfo.asc' removed './b2/tnseq-transit_2.3.4-1_amd64.buildinfo.asc'