Sun Aug 15 15:15:16 UTC 2021 I: starting to build ssm/buster/amd64 on jenkins on '2021-08-15 15:15' Sun Aug 15 15:15:16 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_10/28862/console.log Sun Aug 15 15:15:16 UTC 2021 I: Downloading source for buster/ssm=1.4.0-1 --2021-08-15 15:15:16-- http://deb.debian.org/debian/pool/main/s/ssm/ssm_1.4.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2183 (2.1K) Saving to: ‘ssm_1.4.0-1.dsc’ 0K .. 100% 123M=0s 2021-08-15 15:15:16 (123 MB/s) - ‘ssm_1.4.0-1.dsc’ saved [2183/2183] Sun Aug 15 15:15:16 UTC 2021 I: ssm_1.4.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ssm Binary: libssm-dev, libssm-bin, libssm2 Architecture: any Version: 1.4.0-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Andrius Merkys Homepage: http://www.ccp4.ac.uk/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/science-team/ssm Vcs-Git: https://salsa.debian.org/science-team/ssm.git Build-Depends: debhelper (>= 11), libccp4-dev, libmmdb2-dev Package-List: libssm-bin deb science optional arch=any libssm-dev deb libdevel optional arch=any libssm2 deb libs optional arch=any Checksums-Sha1: f94aac4b14bf3effe4f788a03b26897fe381ea42 431780 ssm_1.4.0.orig.tar.gz 6a28e08c231fc32dcd1416c7751bb1e5af961796 3260 ssm_1.4.0-1.debian.tar.xz Checksums-Sha256: dea88fd6a2716702ba064ca7c5889d98ee994b1d76227634cb3f7228893a8238 431780 ssm_1.4.0.orig.tar.gz 071050593e262bccb7a215a7f950cd09e1ea2118fa91b1923a3bcfd68e55b5c6 3260 ssm_1.4.0-1.debian.tar.xz Files: 3cf7b2854141a60e85068a02a240155b 431780 ssm_1.4.0.orig.tar.gz a263c639626ea3d8f48e17fa2f81546d 3260 ssm_1.4.0-1.debian.tar.xz Dgit: 9f63b1073f063ba3d400e4c5d566dcc08f29493e debian archive/debian/1.4.0-1 https://git.dgit.debian.org/ssm -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE2bRTt5m4gw2UXmoKW/VOXhK5ALsFAlrux6gRHHBpY2NhQGRl Ymlhbi5vcmcACgkQW/VOXhK5ALvIEQ//aAlxx6wcMMTl50N+HR3kxzroS2Yr0D63 +NOaXdw/Cfg071Kri2y+o9P8NdckPaqbGMuGdmtE4z89pXRCrYVXxuV/bjnyPQda uaI8PQ1nznmp4EJCstwzpG8rOi5d4OtuJ6SFahNedVuShGI50wejhtPOQSala7Yw tXiqMWAaZMhM33mWvrunHCcAZ1yJl5qr5c2NhNWmnNvSobwXqNYzKub9AGSOs7Z/ 2wJMXnUCAYTsLjDshZ7VTHHI00tsQ40N7lbZY0Ahx6VWVsPBH98ixqLYWb1ARA72 Uz8LO3CRO9DZyADckYetRbVKS2fShtPbkCBlnCd3/7Iyc6caWfelAvsxOCyRF10g rzTjv35dmNKY5MOH1gH0rf4hWfO9YMlCZAB8GLQ991J4zM22UAJbCvuBW59X+g0x xD+PqSSBOAUYiSFlVJsenAxZdwJMdVhIUvZUR/1BVwvsdM34zCCeoXezE8z+Vp9w bxR3CjjIkQaIeOTVQpl5jeFKnebXPe+OPNhIEYa9GCEjzCIYZ9OCN1+6ZGHlDl6l o2qFpaCkfWNdW+xMG7RvHjnWVnUfiOeo1wpQl3m6oO74yrXEcN3gkMdmhXGnmnQd UZsxV96ttlTFl9w0UEDNzdY0CGty3sXBwc8axbObvrPJQT7J9qateQSUk7OE8CCC T0ydpMfbgOU= =Zk8Q -----END PGP SIGNATURE----- Sun Aug 15 15:15:16 UTC 2021 I: Checking whether the package is not for us Sun Aug 15 15:15:16 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun Aug 15 15:15:16 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun Aug 15 15:17:05 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Sep 17 09:38:25 -12 2022 I: pbuilder-time-stamp: 1663450705 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ssm_1.4.0-1.dsc] I: copying [./ssm_1.4.0.orig.tar.gz] I: copying [./ssm_1.4.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat May 5 21:15:20 2018 -12 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ssm_1.4.0-1.dsc dpkg-source: info: extracting ssm in ssm-1.4.0 dpkg-source: info: unpacking ssm_1.4.0.orig.tar.gz dpkg-source: info: unpacking ssm_1.4.0-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/63467/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='197ae9e44fef445b8847f019d9a857a8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='63467' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.1EcxsxTIGE/pbuilderrc_N06s --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.1EcxsxTIGE/b1 --logfile b1/build.log ssm_1.4.0-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 9 02:46 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/63467/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), libccp4-dev, libmmdb2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libccp4-dev; however: Package libccp4-dev is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 20.5 MB of archives. After unpacking 75.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libccp4-data all 6.5.1-1 [61.3 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libccp4c0 amd64 6.5.1-1+b1 [87.9 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libmmdb2-0 amd64 2.0.5-1 [333 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libccp4f0 amd64 6.5.1-1+b1 [233 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libccp4-dev amd64 6.5.1-1+b1 [42.7 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libmmdb2-dev amd64 2.0.5-1 [91.9 kB] Fetched 20.5 MB in 1s (31.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... 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Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libccp4f0:amd64 (6.5.1-1+b1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libccp4-dev:amd64 (6.5.1-1+b1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/ssm-1.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ssm dpkg-buildpackage: info: source version 1.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --ddeb-migration='libssm1-dbg (<< 1.4.0-1~)' dh_auto_clean "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_autoreconf_clean "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_clean "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" debian/rules build dh build --ddeb-migration='libssm1-dbg (<< 1.4.0-1~)' dh_update_autotools_config "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_autoreconf "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:11: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ssm-1.4.0' dh_auto_configure -- --enable-superpose --enable-ccp4 --disable-static --enable-shared ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-superpose --enable-ccp4 --disable-static --enable-shared checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for library containing cos... -lm checking for MMDB_CCIF_Init in -lmmdb2... yes checking mmdb2/mmdb_manager.h usability... yes checking mmdb2/mmdb_manager.h presence... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ssm.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/ssm-1.4.0' dh_auto_build "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" make -j16 make[1]: Entering directory '/build/ssm-1.4.0' make all-am make[2]: Entering directory '/build/ssm-1.4.0' g++ -DHAVE_CONFIG_H -I. -D_ccp4_ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o superpose-superpose.o `test -f 'superpose.cpp' || echo './'`superpose.cpp g++ -DHAVE_CONFIG_H -I. -D_ccp4_ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o superpose-sup_pairwise.o `test -f 'sup_pairwise.cpp' || echo './'`sup_pairwise.cpp g++ -DHAVE_CONFIG_H -I. -D_ccp4_ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o superpose-sup_multiple.o `test -f 'sup_multiple.cpp' || echo './'`sup_multiple.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_superpose.lo ssm/ssm_superpose.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_csia.lo ssm/ssm_csia.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_vxedge.lo ssm/ssm_vxedge.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_align.lo ssm/ssm_align.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_malign.lo ssm/ssm_malign.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_graph.lo ssm/ssm_graph.cpp superpose.cpp:117:5: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " v."superpose_version" from "superpose_date" built with SSM v.%i.%i.%i, " ^ superpose.cpp:117:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " v."superpose_version" from "superpose_date" built with SSM v.%i.%i.%i, " ^ superpose.cpp:298:5: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Superpose v."superpose_version" from "superpose_date" " ^ superpose.cpp:298:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Superpose v."superpose_version" from "superpose_date" " ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_csia.cpp -fPIC -DPIC -o ssm/.libs/ssm_csia.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_malign.cpp -fPIC -DPIC -o ssm/.libs/ssm_malign.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_align.cpp -fPIC -DPIC -o ssm/.libs/ssm_align.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_graph.cpp -fPIC -DPIC -o ssm/.libs/ssm_graph.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_superpose.cpp -fPIC -DPIC -o ssm/.libs/ssm_superpose.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_vxedge.cpp -fPIC -DPIC -o ssm/.libs/ssm_vxedge.o /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -no-undefined -version-info 2:0:0 -Wl,-z,relro -o libssm.la -rpath /usr/lib/x86_64-linux-gnu ssm/ssm_superpose.lo ssm/ssm_csia.lo ssm/ssm_vxedge.lo ssm/ssm_align.lo ssm/ssm_malign.lo ssm/ssm_graph.lo -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o ssm/.libs/ssm_superpose.o ssm/.libs/ssm_csia.o ssm/.libs/ssm_vxedge.o ssm/.libs/ssm_align.o ssm/.libs/ssm_malign.o ssm/.libs/ssm_graph.o -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libssm.so.2 -o .libs/libssm.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libssm.so.2" && ln -s "libssm.so.2.0.0" "libssm.so.2") libtool: link: (cd ".libs" && rm -f "libssm.so" && ln -s "libssm.so.2.0.0" "libssm.so") libtool: link: ( cd ".libs" && rm -f "libssm.la" && ln -s "../libssm.la" "libssm.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -Wl,-z,relro -o superpose superpose-superpose.o superpose-sup_pairwise.o superpose-sup_multiple.o libssm.la -lmmdb2 -lccp4c -lm libtool: link: g++ -g -O2 -ffile-prefix-map=/build/ssm-1.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -Wl,-z -Wl,relro -o .libs/superpose superpose-superpose.o superpose-sup_pairwise.o superpose-sup_multiple.o ./.libs/libssm.so -lmmdb2 -lccp4c -lm make[2]: Leaving directory '/build/ssm-1.4.0' make[1]: Leaving directory '/build/ssm-1.4.0' dh_auto_test "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" make -j16 check VERBOSE=1 make[1]: Entering directory '/build/ssm-1.4.0' make[1]: Leaving directory '/build/ssm-1.4.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --ddeb-migration='libssm1-dbg (<< 1.4.0-1~)' dh_testroot "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_prep "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_auto_install "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" make -j1 install DESTDIR=/build/ssm-1.4.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/ssm-1.4.0' make[2]: Entering directory '/build/ssm-1.4.0' /bin/mkdir -p '/build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libssm.la '/build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libssm.so.2.0.0 /build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu/libssm.so.2.0.0 libtool: install: (cd /build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libssm.so.2.0.0 libssm.so.2 || { rm -f libssm.so.2 && ln -s libssm.so.2.0.0 libssm.so.2; }; }) libtool: install: (cd /build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libssm.so.2.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.2.0.0 libssm.so; }; }) libtool: install: /usr/bin/install -c .libs/libssm.lai /build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu/libssm.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/ssm-1.4.0/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c superpose '/build/ssm-1.4.0/debian/tmp/usr/bin' libtool: warning: 'libssm.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/superpose /build/ssm-1.4.0/debian/tmp/usr/bin/superpose /bin/mkdir -p '/build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 ssm.pc '/build/ssm-1.4.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /bin/mkdir -p '/build/ssm-1.4.0/debian/tmp/usr/include/ssm' /usr/bin/install -c -m 644 ssm/ssm_superpose.h ssm/ssm_csia.h ssm/ssm_vxedge.h ssm/ssm_align.h ssm/ssm_malign.h ssm/ssm_graph.h ssm/ssm_defs.h '/build/ssm-1.4.0/debian/tmp/usr/include/ssm' make[2]: Leaving directory '/build/ssm-1.4.0' make[1]: Leaving directory '/build/ssm-1.4.0' dh_install "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_installdocs "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_installchangelogs "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_installman "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_installinit "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_perl "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_link "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_strip_nondeterminism "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_compress "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_fixperms "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_missing "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_strip "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_makeshlibs "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_shlibdeps "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_installdeb "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_gencontrol "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_md5sums "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dh_builddeb "-O--ddeb-migration=libssm1-dbg (<< 1.4.0-1~)" dpkg-deb: building package 'libssm-bin-dbgsym' in '../libssm-bin-dbgsym_1.4.0-1_amd64.deb'. dpkg-deb: building package 'libssm-dev' in '../libssm-dev_1.4.0-1_amd64.deb'. dpkg-deb: building package 'libssm2' in '../libssm2_1.4.0-1_amd64.deb'. dpkg-deb: building package 'libssm-bin' in '../libssm-bin_1.4.0-1_amd64.deb'. dpkg-deb: building package 'libssm2-dbgsym' in '../libssm2-dbgsym_1.4.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ssm_1.4.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/63467 and its subdirectories I: Current time: Sat Sep 17 09:40:11 -12 2022 I: pbuilder-time-stamp: 1663450811 Sun Aug 15 15:17:05 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sun Aug 15 15:17:05 UTC 2021 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sun Aug 15 15:18:02 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sun Aug 15 15:18:03 UTC 2021 I: ssm_1.4.0-1_amd64.changes: Format: 1.8 Date: Thu, 03 May 2018 08:05:35 -0400 Source: ssm Binary: libssm-bin libssm-bin-dbgsym libssm-dev libssm2 libssm2-dbgsym Architecture: amd64 Version: 1.4.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: libssm-bin - macromolecular superposition library - binaries libssm-dev - macromolecular superposition library - development files libssm2 - macromolecular superposition library - runtime Changes: ssm (1.4.0-1) unstable; urgency=medium . [Andreas Tille] * Add proper citation record in debian/upstream/metadata and remove citation information from long description . [Picca Frederic-Emmanuel] * update the watch file * debian/control - Bump ssm so number libssm1 -> libssm2 - Added the libssm-bin package with the superpose binary . [Andrius Merkys] * New upstream release. * Adding pkgconfig file to libssm-dev * debian/copyright: HTTP -> HTTPS * debian/compat: bump to 11 * debian/control - Removed useless dependency on dh-autoreconf - Bump Standards-Version 4.1.4 (nothing to do) * Adding manpage for superpose * debian/watch: turning on FTP passive mode * Migrating debug symbols package Checksums-Sha1: d0b2d3388656831be0cbe8229e6a1729ce1fe238 36264 libssm-bin-dbgsym_1.4.0-1_amd64.deb 85e3acef719a978abda9046456414810e3c0a401 13292 libssm-bin_1.4.0-1_amd64.deb e482d1f525314590a6d9e5766a5f1b9fbf993bc8 14836 libssm-dev_1.4.0-1_amd64.deb b32dda507c898bea2677faaf036372d7d6379b80 213724 libssm2-dbgsym_1.4.0-1_amd64.deb 175db4cc8f1a14fa884ade76a00154ff01309bed 82652 libssm2_1.4.0-1_amd64.deb e0711eb89fc2c0059cf1c6c7f4fa162c938021c1 5629 ssm_1.4.0-1_amd64.buildinfo Checksums-Sha256: 67cb2b4c45047a15e75d48d0b3771ee85091db35d65b9b571ec625dd08d105c8 36264 libssm-bin-dbgsym_1.4.0-1_amd64.deb f808e85c46260a1431ff3b3b4e125e6536d213d907779c4f34b08367269f13d9 13292 libssm-bin_1.4.0-1_amd64.deb d3f37dea2903f48f2b2fc139f4f5663ee6a34cd6126e9c026a20e66e4ebc4d6a 14836 libssm-dev_1.4.0-1_amd64.deb 8f46b79e9acbf288e2ebc5a6a08b0707180b76273496761dd38eb0986ddb87cb 213724 libssm2-dbgsym_1.4.0-1_amd64.deb ad655746e0940cecc07896a4436df527bb7628a1fedda58a60f85a0a8ad9a3ee 82652 libssm2_1.4.0-1_amd64.deb 839bc319233d8ae10fb7c6baa720b9e6f073af977e0b6c065d3a7b0898242ed2 5629 ssm_1.4.0-1_amd64.buildinfo Files: 24a2c62c11eb075163952833c4c34044 36264 debug optional libssm-bin-dbgsym_1.4.0-1_amd64.deb 56357f01ad0d1a8c0a2f9aa32c109980 13292 science optional libssm-bin_1.4.0-1_amd64.deb a05212abde081ec5c76b03438b7c1aa8 14836 libdevel optional libssm-dev_1.4.0-1_amd64.deb bb8c741688fe62cd6ab16f9bb10bf47d 213724 debug optional libssm2-dbgsym_1.4.0-1_amd64.deb 1a373a434355ee3dff69952a52d46eb9 82652 libs optional libssm2_1.4.0-1_amd64.deb b318f5151e4d43f364f2f8724e246e04 5629 science optional ssm_1.4.0-1_amd64.buildinfo Sun Aug 15 15:18:04 UTC 2021 I: diffoscope 180 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.1EcxsxTIGE/ssm_1.4.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.1EcxsxTIGE/ssm_1.4.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.1EcxsxTIGE/ssm_1.4.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.1EcxsxTIGE/b1/ssm_1.4.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.1EcxsxTIGE/b2/ssm_1.4.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.252s) 0.252s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Aug 15 15:18:11 UTC 2021 I: diffoscope 180 found no differences in the changes files, and a .buildinfo file also exists. Sun Aug 15 15:18:11 UTC 2021 I: ssm from buster built successfully and reproducibly on amd64. Sun Aug 15 15:18:12 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Aug 15 15:18:12 UTC 2021 I: Submitting 8.0K b1/ssm_1.4.0-1_amd64.buildinfo.asc Sun Aug 15 15:18:13 UTC 2021 I: Submitting 8.0K b2/ssm_1.4.0-1_amd64.buildinfo.asc Sun Aug 15 15:18:14 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Aug 15 15:18:14 UTC 2021 I: Done submitting .buildinfo files. Sun Aug 15 15:18:14 UTC 2021 I: Removing signed ssm_1.4.0-1_amd64.buildinfo.asc files: removed './b1/ssm_1.4.0-1_amd64.buildinfo.asc' removed './b2/ssm_1.4.0-1_amd64.buildinfo.asc'