Tue Dec 8 19:14:42 UTC 2020 I: starting to build sprai/buster/amd64 on jenkins on '2020-12-08 19:14' Tue Dec 8 19:14:42 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/30373/console.log Tue Dec 8 19:14:42 UTC 2020 I: Downloading source for buster/sprai=0.9.9.23+dfsg-2 --2020-12-08 19:14:43-- http://deb.debian.org/debian/pool/main/s/sprai/sprai_0.9.9.23+dfsg-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1986 (1.9K) Saving to: ‘sprai_0.9.9.23+dfsg-2.dsc’ 0K . 100% 250M=0s 2020-12-08 19:14:43 (250 MB/s) - ‘sprai_0.9.9.23+dfsg-2.dsc’ saved [1986/1986] Tue Dec 8 19:14:43 UTC 2020 I: sprai_0.9.9.23+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: sprai Binary: sprai Architecture: any Version: 0.9.9.23+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: http://zombie.cb.k.u-tokyo.ac.jp/sprai/index.html Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/sprai Vcs-Git: https://salsa.debian.org/med-team/sprai.git Build-Depends: debhelper (>= 11~), python Package-List: sprai deb science optional arch=any Checksums-Sha1: 8d97b6096221ad638950e2c806c3b949db03fee1 179509 sprai_0.9.9.23+dfsg.orig.tar.gz 7b9d70d2623aa22ac8e86a1492feecbe08fe574f 1446412 sprai_0.9.9.23+dfsg-2.debian.tar.xz Checksums-Sha256: b275b3a1d02c3c0d3b2ed7b03c6b1a8bdceca01b10c0fc6a725a27d66000708f 179509 sprai_0.9.9.23+dfsg.orig.tar.gz eb923c84dba8ccb42f6a2f2f12b2c12dd2167e1a4442e97ed47b493fc9094f2a 1446412 sprai_0.9.9.23+dfsg-2.debian.tar.xz Files: f96ecf4effc2d4caea1f58a3f7be8dc5 179509 sprai_0.9.9.23+dfsg.orig.tar.gz 76e535a4d747cbf2c6b36a10c43fe81a 1446412 sprai_0.9.9.23+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwzRdMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFv+A//cKjEjQ6vDzLv6XXTsTBLZj/NgScm5UYg dj79+oTQ/EWOmSPsXeX70UKHN/xshdS5WtYv1VjMGwqLg44Pv/mH3IyLvx7elO6Y HfozIsL0wLvo3BSSITCM4j2KG6RUbwuhwxhuT9ycCeMU6Bl8EOfgYFnjwfzd8hUc IwhKlQ8PWE/sie2slRucXnInLvooM6+4BymrR7aEz/yIWx3K2qkAdlJJqt5mBYHp 0/o5bJS4aHLPNQLZ3M+SiyPSPYXfHPw10zR7YABg6sFC3DJFrGNrAipvlUBvxbEO 0F9w6dF/5aCiZSJmDVTBDhPglNrtgYHBZHJQyvOtTgu6wVPHMmpxFDvO5kuGKzHU 2SHvZB8EbD9zVwXVoUioIBcu16ieW07+uFNQWYNji5iH7171Z+WDDO/i9+aD4Jr/ b6FYioUvCvOJtiML5IqAUI9uNtejuh3aDv4K2Ux7dgPswiYzrZ6Gu4dv/VSfRQhh qyXB29X8PgRGOCzS/gJoB09hwwRa9eiX31ZgaNEDeL3zu0ecnilpnfxy65rVdeLm oDSdfY6ycfCbaoibMG+XD8ta9YknvNS6yDntNycCpLPYgMUMJvgXvkqtcag2g25i c98rwGitZ87KG74APoir1XdTVmgLhc4CT1vJX6qN0mGATfUmgXalTh31fauzsQZ4 5O0cvsTmjW8= =73TX -----END PGP SIGNATURE----- Tue Dec 8 19:14:43 UTC 2020 I: Checking whether the package is not for us Tue Dec 8 19:14:43 UTC 2020 I: Starting 1st build on remote node ionos15-amd64.debian.net. Tue Dec 8 19:14:43 UTC 2020 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Tue Dec 8 19:15:11 UTC 2020 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 10 13:37:45 -12 2022 I: pbuilder-time-stamp: 1641865065 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sprai_0.9.9.23+dfsg-2.dsc] I: copying [./sprai_0.9.9.23+dfsg.orig.tar.gz] I: copying [./sprai_0.9.9.23+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 7 00:28:03 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./sprai_0.9.9.23+dfsg-2.dsc dpkg-source: info: extracting sprai in sprai-0.9.9.23+dfsg dpkg-source: info: unpacking sprai_0.9.9.23+dfsg.orig.tar.gz dpkg-source: info: unpacking sprai_0.9.9.23+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libexec.patch dpkg-source: info: applying example-specs.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/54796/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a8871772574c48458132d05d79981339' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='54796' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.20ZRrtsYrP/pbuilderrc_ewcY --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.20ZRrtsYrP/b1 --logfile b1/build.log sprai_0.9.9.23+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.9.0-0.bpo.2-amd64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 9 02:47 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/54796/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), python dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on python; however: Package python is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 25.1 MB of archives. After unpacking 91.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u3 [1538 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Fetched 25.1 MB in 0s (73.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. 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Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-0+deb10u3) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/sprai-0.9.9.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/sprai-0.9.9.23+dfsg' ./waf -vvv distclean 'distclean' finished successfully (0.000s) find waflib -name "*.pyc" -delete make[1]: Leaving directory '/build/sprai-0.9.9.23+dfsg' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/sprai-0.9.9.23+dfsg' ./waf -vvv configure --prefix=/usr Setting top to : /build/sprai-0.9.9.23+dfsg Setting out to : /build/sprai-0.9.9.23+dfsg/build Checking for 'gcc' (c compiler) : 13:38:04 ccroot dest platform: linux elf x86_64 13:38:04 action ['def f(tsk):', '\tenv = tsk.env', '\tgen = tsk.generator', '\tbld = gen.bld', "\twd = getattr(tsk, 'cwd', None)", '\tdef to_list(xx):', '\t\tif isinstance(xx, str): return [xx]', '\t\treturn xx', '\ttsk.last_cmd = lst = []', "\tlst.extend(to_list(env['CC']))", "\tlst.extend(tsk.colon('ARCH_ST', 'ARCH'))", "\tlst.extend(to_list(env['CFLAGS']))", "\tlst.extend(to_list(env['CPPFLAGS']))", "\tlst.extend(tsk.colon('FRAMEWORKPATH_ST', 'FRAMEWORKPATH'))", "\tlst.extend(tsk.colon('CPPPATH_ST', 'INCPATHS'))", "\tlst.extend(tsk.colon('DEFINES_ST', 'DEFINES'))", "\tlst.extend(to_list(env['CC_SRC_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.inputs])', "\tlst.extend(to_list(env['CC_TGT_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.outputs])', '\tlst = [x for x in lst if x]', '\treturn tsk.exec_command(lst, cwd=wd, env=env.env or None)'] 13:38:04 action ['def f(tsk):', '\tenv = tsk.env', '\tgen = tsk.generator', '\tbld = gen.bld', "\twd = getattr(tsk, 'cwd', None)", '\tdef to_list(xx):', '\t\tif isinstance(xx, str): return [xx]', '\t\treturn xx', '\ttsk.last_cmd = lst = []', "\tlst.extend(to_list(env['LINK_CC']))", "\tlst.extend(to_list(env['LINKFLAGS']))", "\tlst.extend(to_list(env['CCLNK_SRC_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.inputs])', "\tlst.extend(to_list(env['CCLNK_TGT_F']))", '\tlst.append(tsk.outputs[0].abspath())', "\tlst.extend(tsk.colon('RPATH_ST', 'RPATH'))", "\tlst.extend(tsk.colon('FRAMEWORKPATH_ST', 'FRAMEWORKPATH'))", "\tlst.extend(tsk.colon('FRAMEWORK_ST', 'FRAMEWORK'))", "\tlst.extend(tsk.colon('ARCH_ST', 'ARCH'))", "\tlst.extend(to_list(env['STLIB_MARKER']))", "\tlst.extend(tsk.colon('STLIBPATH_ST', 'STLIBPATH'))", "\tlst.extend(tsk.colon('STLIB_ST', 'STLIB'))", "\tlst.extend(to_list(env['SHLIB_MARKER']))", "\tlst.extend(tsk.colon('LIBPATH_ST', 'LIBPATH'))", "\tlst.extend(tsk.colon('LIB_ST', 'LIB'))", '\tlst = [x for x in lst if x]', '\treturn tsk.exec_command(lst, cwd=wd, env=env.env or None)'] /usr/bin/gcc Checking for minimum perl version : 13:38:04 runner ['/usr/bin/perl', '-e', 'printf "%vd", $^V'] 5.28.1 perl module Statistics::Descriptive : 13:38:04 runner ['/usr/bin/perl', '-e', 'use Statistics::Descriptive'] not found 'configure' finished successfully (0.070s) make[1]: Leaving directory '/build/sprai-0.9.9.23+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/sprai-0.9.9.23+dfsg' ./waf -vvv build 13:38:05 env {'version': 17238272, 'tools': [{'tool': 'ar', 'tooldir': None, 'funs': None}, {'tool': 'c', 'tooldir': None, 'funs': None}, {'tool': 'gcc', 'tooldir': None, 'funs': None}, {'tool': 'compiler_c', 'tooldir': None, 'funs': None}, {'tool': 'perl', 'tooldir': None, 'funs': None}]} 13:38:05 action ['def f(tsk):', '\tenv = tsk.env', '\tgen = tsk.generator', '\tbld = gen.bld', "\twd = getattr(tsk, 'cwd', None)", '\tdef to_list(xx):', '\t\tif isinstance(xx, str): return [xx]', '\t\treturn xx', '\ttsk.last_cmd = lst = []', "\tlst.extend(to_list(env['CC']))", "\tlst.extend(tsk.colon('ARCH_ST', 'ARCH'))", "\tlst.extend(to_list(env['CFLAGS']))", "\tlst.extend(to_list(env['CPPFLAGS']))", "\tlst.extend(tsk.colon('FRAMEWORKPATH_ST', 'FRAMEWORKPATH'))", "\tlst.extend(tsk.colon('CPPPATH_ST', 'INCPATHS'))", "\tlst.extend(tsk.colon('DEFINES_ST', 'DEFINES'))", "\tlst.extend(to_list(env['CC_SRC_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.inputs])', "\tlst.extend(to_list(env['CC_TGT_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.outputs])', '\tlst = [x for x in lst if x]', '\treturn tsk.exec_command(lst, cwd=wd, env=env.env or None)'] 13:38:05 action ['def f(tsk):', '\tenv = tsk.env', '\tgen = tsk.generator', '\tbld = gen.bld', "\twd = getattr(tsk, 'cwd', None)", '\tdef to_list(xx):', '\t\tif isinstance(xx, str): return [xx]', '\t\treturn xx', '\ttsk.last_cmd = lst = []', "\tlst.extend(to_list(env['LINK_CC']))", "\tlst.extend(to_list(env['LINKFLAGS']))", "\tlst.extend(to_list(env['CCLNK_SRC_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.inputs])', "\tlst.extend(to_list(env['CCLNK_TGT_F']))", '\tlst.append(tsk.outputs[0].abspath())', "\tlst.extend(tsk.colon('RPATH_ST', 'RPATH'))", "\tlst.extend(tsk.colon('FRAMEWORKPATH_ST', 'FRAMEWORKPATH'))", "\tlst.extend(tsk.colon('FRAMEWORK_ST', 'FRAMEWORK'))", "\tlst.extend(tsk.colon('ARCH_ST', 'ARCH'))", "\tlst.extend(to_list(env['STLIB_MARKER']))", "\tlst.extend(tsk.colon('STLIBPATH_ST', 'STLIBPATH'))", "\tlst.extend(tsk.colon('STLIB_ST', 'STLIB'))", "\tlst.extend(to_list(env['SHLIB_MARKER']))", "\tlst.extend(tsk.colon('LIBPATH_ST', 'LIBPATH'))", "\tlst.extend(tsk.colon('LIB_ST', 'LIB'))", '\tlst = [x for x in lst if x]', '\treturn tsk.exec_command(lst, cwd=wd, env=env.env or None)'] 13:38:05 build Could not load the build cache /build/sprai-0.9.9.23+dfsg/build/.wafpickle-linux2-34017520-98 (missing) 13:38:05 env {'LIBPATH_ST': '-L%s', 'DEST_CPU': 'x86_64', 'CCLNK_SRC_F': [], 'PREFIX': '/usr', 'SONAME_ST': '-Wl,-h,%s', 'STLIB_MARKER': '-Wl,-Bstatic', 'ARFLAGS': 'rcs', 'cprogram_PATTERN': '%s', 'SHLIB_MARKER': '-Wl,-Bdynamic', 'CPPPATH_ST': '-I%s', 'LIBDIR': '/usr/lib', 'LINK_CC': ['/usr/bin/gcc'], 'PERL': '/usr/bin/perl', 'RPATH_ST': '-Wl,-rpath,%s', 'CC_VERSION': ('8', '3', '0'), 'CFLAGS_MACBUNDLE': ['-fPIC'], 'LIB_ST': '-l%s', 'DEFINES_ST': '-D%s', 'BINDIR': '/usr/bin', 'CC_TGT_F': ['-c', '-o'], 'cshlib_PATTERN': 'lib%s.so', 'CCLNK_TGT_F': ['-o'], 'CC': ['/usr/bin/gcc'], 'LINKFLAGS_cshlib': ['-shared'], 'AR': '/usr/bin/ar', 'LINKFLAGS_cstlib': ['-Wl,-Bstatic'], 'STLIB_ST': '-l%s', 'CFLAGS_cshlib': ['-fPIC'], 'CC_SRC_F': [], 'STLIBPATH_ST': '-L%s', 'LINKFLAGS_MACBUNDLE': ['-bundle', '-undefined', 'dynamic_lookup'], 'LINKFLAGS': ['-Wl,-z,relro'], 'cstlib_PATTERN': 'lib%s.a', 'DEST_OS': 'linux', 'COMPILER_CC': 'gcc', 'macbundle_PATTERN': '%s.bundle', 'DEST_BINFMT': 'elf', 'CFLAGS': ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security'], 'CC_NAME': 'gcc'} Waf: Entering directory `/build/sprai-0.9.9.23+dfsg/build' 13:38:05 build compile() 13:38:05 task_gen posting 140069030993488 13:38:05 task_gen -> process_rule (140069030993488) 13:38:05 task_gen -> process_source (140069030993488) 13:38:05 task_gen -> apply_link (140069030993488) 13:38:05 task_gen -> process_use (140069030993488) 13:38:05 task_gen -> propagate_uselib_vars (140069030993488) 13:38:05 task_gen -> apply_incpaths (140069030993488) 13:38:05 task_gen -> check_err_features (140069030993488) 13:38:05 task_gen -> check_err_order (140069030993488) 13:38:05 task_gen -> create_task_macapp (140069030993488) 13:38:05 task_gen -> create_task_macplist (140069030993488) 13:38:05 task_gen -> set_macosx_deployment_target (140069030993488) 13:38:05 task_gen posted bfmt72s 13:38:05 task_gen posting 140069030993040 13:38:05 task_gen -> process_rule (140069030993040) 13:38:05 task_gen -> process_source (140069030993040) 13:38:05 task_gen -> apply_link (140069030993040) 13:38:05 task_gen -> process_use (140069030993040) 13:38:05 task_gen -> propagate_uselib_vars (140069030993040) 13:38:05 task_gen -> apply_incpaths (140069030993040) 13:38:05 task_gen -> check_err_features (140069030993040) 13:38:05 task_gen -> check_err_order (140069030993040) 13:38:05 task_gen -> create_task_macapp (140069030993040) 13:38:05 task_gen -> create_task_macplist (140069030993040) 13:38:05 task_gen -> set_macosx_deployment_target (140069030993040) 13:38:05 task_gen posted nss2v_v3 13:38:05 task_gen posting 140069030993168 13:38:05 task_gen -> process_rule (140069030993168) 13:38:05 task_gen -> process_source (140069030993168) 13:38:05 task_gen -> apply_link (140069030993168) 13:38:05 task_gen -> process_use (140069030993168) 13:38:05 task_gen -> propagate_uselib_vars (140069030993168) 13:38:05 task_gen -> apply_incpaths (140069030993168) 13:38:05 task_gen -> check_err_features (140069030993168) 13:38:05 task_gen -> check_err_order (140069030993168) 13:38:05 task_gen -> create_task_macapp (140069030993168) 13:38:05 task_gen -> create_task_macplist (140069030993168) 13:38:05 task_gen -> set_macosx_deployment_target (140069030993168) 13:38:05 task_gen posted myrealigner 13:38:05 task_gen posting 140069030993360 13:38:05 task_gen -> process_rule (140069030993360) 13:38:05 task_gen -> process_source (140069030993360) 13:38:05 task_gen -> apply_link (140069030993360) 13:38:05 task_gen -> process_use (140069030993360) 13:38:05 task_gen -> propagate_uselib_vars (140069030993360) 13:38:05 task_gen -> apply_incpaths (140069030993360) 13:38:05 task_gen -> check_err_features (140069030993360) 13:38:05 task_gen -> check_err_order (140069030993360) 13:38:05 task_gen -> create_task_macapp (140069030993360) 13:38:05 task_gen -> create_task_macplist (140069030993360) 13:38:05 task_gen -> set_macosx_deployment_target (140069030993360) 13:38:05 task_gen posted m52bfmt7 13:38:05 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:05 preproc scanning bfmt72s.c (in sprai-0.9.9.23+dfsg) 13:38:05 preproc reading file '/build/sprai-0.9.9.23+dfsg/bfmt72s.c' 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found stdio.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found stdlib.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found string.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found unistd.h (<) 13:38:05 preproc line is define - LAUX 32 state is [] 13:38:05 deps deps for [/build/sprai-0.9.9.23+dfsg/bfmt72s.c]: []; unresolved ['stdio.h', 'stdlib.h', 'string.h', 'unistd.h'] 13:38:05 deps scanner for c: bfmt72s.c -> build/bfmt72s.c.1.o returned [] ['stdio.h', 'stdlib.h', 'string.h', 'unistd.h'] 13:38:05 task task {task 140069030990288: c bfmt72s.c -> bfmt72s.c.1.o} must run as it was never run before or the task code changed 13:38:05 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:05 preproc scanning nss2v_v3.c (in sprai-0.9.9.23+dfsg) 13:38:05 preproc reading file '/build/sprai-0.9.9.23+dfsg/nss2v_v3.c' 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found stdio.h (<) [1/8] c: bfmt72s.c -> build/bfmt72s.c.1.o 13:38:05 preproc line is include - state is [] 13:38:05 runner ['/usr/bin/gcc', '-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall', '-I/build/sprai-0.9.9.23+dfsg/build', '-I/build/sprai-0.9.9.23+dfsg', '../bfmt72s.c', '-c', '-o', 'bfmt72s.c.1.o'] 13:38:05 preproc include found stdlib.h (<) 13:38:05 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found string.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found unistd.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found getopt.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found ctype.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found assert.h (<) 13:38:05 preproc line is define - LAUX 32 state is [] 13:38:05 preproc line is define - NROWS 512 state is [] 13:38:05 preproc line is define - LISTSIZE (1024) state is [] 13:38:05 preproc line is define - FoS 16 state is [] 13:38:05 deps deps for [/build/sprai-0.9.9.23+dfsg/nss2v_v3.c]: []; unresolved ['stdio.h', 'stdlib.h', 'string.h', 'unistd.h', 'getopt.h', 'ctype.h', 'assert.h'] 13:38:05 deps scanner for c: nss2v_v3.c -> build/nss2v_v3.c.2.o returned [] ['stdio.h', 'stdlib.h', 'string.h', 'unistd.h', 'getopt.h', 'ctype.h', 'assert.h'] 13:38:05 task task {task 140069031100560: c nss2v_v3.c -> nss2v_v3.c.2.o} must run as it was never run before or the task code changed 13:38:05 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:05 preproc scanning myrealigner.c (in sprai-0.9.9.23+dfsg) 13:38:05 preproc reading file '/build/sprai-0.9.9.23+dfsg/myrealigner.c' [2/8] c: nss2v_v3.c -> build/nss2v_v3.c.2.o 13:38:05 runner ['/usr/bin/gcc', '-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall', '-I/build/sprai-0.9.9.23+dfsg/build', '-I/build/sprai-0.9.9.23+dfsg', '../nss2v_v3.c', '-c', '-o', 'nss2v_v3.c.2.o'] 13:38:05 preproc line is include - state is [] 13:38:05 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} 13:38:05 preproc include found stdio.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found string.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found stdlib.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found unistd.h (<) 13:38:05 preproc line is include - "col2fqcell.h" state is [] 13:38:05 preproc include found col2fqcell.h (") 13:38:05 preproc reading file '/build/sprai-0.9.9.23+dfsg/col2fqcell.h' 13:38:05 preproc line is define - FoS 16 state is [] 13:38:05 preproc line is define - BUFSIZE 4096 state is [] 13:38:05 preproc line is define - DEL 1 state is [] 13:38:05 preproc line is define - SUB 0 state is [] 13:38:05 preproc line is define - INS 2 state is [] 13:38:05 deps deps for [/build/sprai-0.9.9.23+dfsg/myrealigner.c]: [/build/sprai-0.9.9.23+dfsg/col2fqcell.h]; unresolved ['stdio.h', 'string.h', 'stdlib.h', 'unistd.h'] 13:38:05 deps scanner for c: myrealigner.c -> build/myrealigner.c.3.o returned [/build/sprai-0.9.9.23+dfsg/col2fqcell.h] ['stdio.h', 'string.h', 'stdlib.h', 'unistd.h'] 13:38:05 task task {task 140069031100752: c myrealigner.c -> myrealigner.c.3.o} must run as it was never run before or the task code changed [3/8] c: myrealigner.c -> build/myrealigner.c.3.o 13:38:05 runner ['/usr/bin/gcc', '-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall', '-I/build/sprai-0.9.9.23+dfsg/build', '-I/build/sprai-0.9.9.23+dfsg', '../myrealigner.c', '-c', '-o', 'myrealigner.c.3.o'] 13:38:05 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} 13:38:05 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:05 preproc scanning m52bfmt7.c (in sprai-0.9.9.23+dfsg) 13:38:05 preproc reading file '/build/sprai-0.9.9.23+dfsg/m52bfmt7.c' 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found stdio.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found stdlib.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found string.h (<) 13:38:05 preproc line is include - state is [] 13:38:05 preproc include found unistd.h (<) 13:38:05 deps deps for [/build/sprai-0.9.9.23+dfsg/m52bfmt7.c]: []; unresolved ['stdio.h', 'stdlib.h', 'string.h', 'unistd.h'] 13:38:05 deps scanner for c: m52bfmt7.c -> build/m52bfmt7.c.4.o returned [] ['stdio.h', 'stdlib.h', 'string.h', 'unistd.h'] 13:38:05 task task {task 140069031101008: c m52bfmt7.c -> m52bfmt7.c.4.o} must run as it was never run before or the task code changed [4/8] c: m52bfmt7.c -> build/m52bfmt7.c.4.o 13:38:05 runner ['/usr/bin/gcc', '-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall', '-I/build/sprai-0.9.9.23+dfsg/build', '-I/build/sprai-0.9.9.23+dfsg', '../m52bfmt7.c', '-c', '-o', 'm52bfmt7.c.4.o'] 13:38:05 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} 13:38:05 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] 13:38:05 task task {task 140069031101200: cprogram m52bfmt7.c.4.o -> m52bfmt7} must run as it was never run before or the task code changed [5/8] cprogram: build/m52bfmt7.c.4.o -> build/m52bfmt7 13:38:05 runner ['/usr/bin/gcc', '-Wl,-z,relro', 'm52bfmt7.c.4.o', '-o', '/build/sprai-0.9.9.23+dfsg/build/m52bfmt7', '-Wl,-Bstatic', '-Wl,-Bdynamic'] 13:38:05 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} ../bfmt72s.c: In function 'main': ../bfmt72s.c:444:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf+line_length, LBUF + 1, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 13:38:05 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] 13:38:05 task task {task 140069030990096: cprogram bfmt72s.c.1.o -> bfmt72s} must run as it was never run before or the task code changed [6/8] cprogram: build/bfmt72s.c.1.o -> build/bfmt72s 13:38:05 runner ['/usr/bin/gcc', '-Wl,-z,relro', 'bfmt72s.c.1.o', '-o', '/build/sprai-0.9.9.23+dfsg/build/bfmt72s', '-Wl,-Bstatic', '-Wl,-Bdynamic'] 13:38:05 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} ../nss2v_v3.c: In function 'get_sam_record': ../nss2v_v3.c:471:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buf+line_length, buffer_size + 1, in_sam); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 13:38:05 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] 13:38:05 task task {task 140069031100688: cprogram nss2v_v3.c.2.o -> nss2v_v3} must run as it was never run before or the task code changed [7/8] cprogram: build/nss2v_v3.c.2.o -> build/nss2v_v3 13:38:05 runner ['/usr/bin/gcc', '-Wl,-z,relro', 'nss2v_v3.c.2.o', '-o', '/build/sprai-0.9.9.23+dfsg/build/nss2v_v3', '-Wl,-Bstatic', '-Wl,-Bdynamic'] 13:38:05 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} ../myrealigner.c: In function 'main': ../myrealigner.c:1313:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i = 1; i < 5; ++i) ^~~ ../myrealigner.c:1316:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' score += (col->colDepth-max); ^~~~~ 13:38:06 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] 13:38:06 task task {task 140069031100944: cprogram myrealigner.c.3.o -> myrealigner} must run as it was never run before or the task code changed [8/8] cprogram: build/myrealigner.c.3.o -> build/myrealigner 13:38:06 runner ['/usr/bin/gcc', '-Wl,-z,relro', 'myrealigner.c.3.o', '-o', '/build/sprai-0.9.9.23+dfsg/build/myrealigner', '-Wl,-Bstatic', '-Wl,-Bdynamic'] 13:38:06 runner_env kw={'shell': False, 'cwd': '/build/sprai-0.9.9.23+dfsg/build', 'env': None} Waf: Leaving directory `/build/sprai-0.9.9.23+dfsg/build' 'build' finished successfully (1.065s) make[1]: Leaving directory '/build/sprai-0.9.9.23+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/sprai-0.9.9.23+dfsg' ./waf -vvv install --destdir=/build/sprai-0.9.9.23+dfsg/debian/sprai 13:38:06 env {'version': 17238272, 'tools': [{'tool': 'ar', 'tooldir': None, 'funs': None}, {'tool': 'c', 'tooldir': None, 'funs': None}, {'tool': 'gcc', 'tooldir': None, 'funs': None}, {'tool': 'compiler_c', 'tooldir': None, 'funs': None}, {'tool': 'perl', 'tooldir': None, 'funs': None}]} 13:38:06 action ['def f(tsk):', '\tenv = tsk.env', '\tgen = tsk.generator', '\tbld = gen.bld', "\twd = getattr(tsk, 'cwd', None)", '\tdef to_list(xx):', '\t\tif isinstance(xx, str): return [xx]', '\t\treturn xx', '\ttsk.last_cmd = lst = []', "\tlst.extend(to_list(env['CC']))", "\tlst.extend(tsk.colon('ARCH_ST', 'ARCH'))", "\tlst.extend(to_list(env['CFLAGS']))", "\tlst.extend(to_list(env['CPPFLAGS']))", "\tlst.extend(tsk.colon('FRAMEWORKPATH_ST', 'FRAMEWORKPATH'))", "\tlst.extend(tsk.colon('CPPPATH_ST', 'INCPATHS'))", "\tlst.extend(tsk.colon('DEFINES_ST', 'DEFINES'))", "\tlst.extend(to_list(env['CC_SRC_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.inputs])', "\tlst.extend(to_list(env['CC_TGT_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.outputs])', '\tlst = [x for x in lst if x]', '\treturn tsk.exec_command(lst, cwd=wd, env=env.env or None)'] 13:38:06 action ['def f(tsk):', '\tenv = tsk.env', '\tgen = tsk.generator', '\tbld = gen.bld', "\twd = getattr(tsk, 'cwd', None)", '\tdef to_list(xx):', '\t\tif isinstance(xx, str): return [xx]', '\t\treturn xx', '\ttsk.last_cmd = lst = []', "\tlst.extend(to_list(env['LINK_CC']))", "\tlst.extend(to_list(env['LINKFLAGS']))", "\tlst.extend(to_list(env['CCLNK_SRC_F']))", '\tlst.extend([a.path_from(bld.bldnode) for a in tsk.inputs])', "\tlst.extend(to_list(env['CCLNK_TGT_F']))", '\tlst.append(tsk.outputs[0].abspath())', "\tlst.extend(tsk.colon('RPATH_ST', 'RPATH'))", "\tlst.extend(tsk.colon('FRAMEWORKPATH_ST', 'FRAMEWORKPATH'))", "\tlst.extend(tsk.colon('FRAMEWORK_ST', 'FRAMEWORK'))", "\tlst.extend(tsk.colon('ARCH_ST', 'ARCH'))", "\tlst.extend(to_list(env['STLIB_MARKER']))", "\tlst.extend(tsk.colon('STLIBPATH_ST', 'STLIBPATH'))", "\tlst.extend(tsk.colon('STLIB_ST', 'STLIB'))", "\tlst.extend(to_list(env['SHLIB_MARKER']))", "\tlst.extend(tsk.colon('LIBPATH_ST', 'LIBPATH'))", "\tlst.extend(tsk.colon('LIB_ST', 'LIB'))", '\tlst = [x for x in lst if x]', '\treturn tsk.exec_command(lst, cwd=wd, env=env.env or None)'] 13:38:06 env {'LIBPATH_ST': '-L%s', 'DEST_CPU': 'x86_64', 'CCLNK_SRC_F': [], 'PREFIX': '/usr', 'SONAME_ST': '-Wl,-h,%s', 'STLIB_MARKER': '-Wl,-Bstatic', 'ARFLAGS': 'rcs', 'cprogram_PATTERN': '%s', 'SHLIB_MARKER': '-Wl,-Bdynamic', 'CPPPATH_ST': '-I%s', 'LIBDIR': '/usr/lib', 'LINK_CC': ['/usr/bin/gcc'], 'PERL': '/usr/bin/perl', 'RPATH_ST': '-Wl,-rpath,%s', 'CC_VERSION': ('8', '3', '0'), 'CFLAGS_MACBUNDLE': ['-fPIC'], 'LIB_ST': '-l%s', 'DEFINES_ST': '-D%s', 'BINDIR': '/usr/bin', 'CC_TGT_F': ['-c', '-o'], 'cshlib_PATTERN': 'lib%s.so', 'CCLNK_TGT_F': ['-o'], 'CC': ['/usr/bin/gcc'], 'LINKFLAGS_cshlib': ['-shared'], 'AR': '/usr/bin/ar', 'LINKFLAGS_cstlib': ['-Wl,-Bstatic'], 'STLIB_ST': '-l%s', 'CFLAGS_cshlib': ['-fPIC'], 'CC_SRC_F': [], 'STLIBPATH_ST': '-L%s', 'LINKFLAGS_MACBUNDLE': ['-bundle', '-undefined', 'dynamic_lookup'], 'LINKFLAGS': ['-Wl,-z,relro'], 'cstlib_PATTERN': 'lib%s.a', 'DEST_OS': 'linux', 'COMPILER_CC': 'gcc', 'macbundle_PATTERN': '%s.bundle', 'DEST_BINFMT': 'elf', 'CFLAGS': ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security'], 'CC_NAME': 'gcc'} Waf: Entering directory `/build/sprai-0.9.9.23+dfsg/build' 13:38:06 build compile() 13:38:06 task_gen posting 140395272804944 13:38:06 task_gen -> process_rule (140395272804944) 13:38:06 task_gen -> process_source (140395272804944) 13:38:06 task_gen -> apply_link (140395272804944) 13:38:06 task_gen -> process_use (140395272804944) 13:38:06 task_gen -> propagate_uselib_vars (140395272804944) 13:38:06 task_gen -> apply_incpaths (140395272804944) 13:38:06 task_gen -> check_err_features (140395272804944) 13:38:06 task_gen -> check_err_order (140395272804944) 13:38:06 task_gen -> create_task_macapp (140395272804944) 13:38:06 task_gen -> create_task_macplist (140395272804944) 13:38:06 task_gen -> set_macosx_deployment_target (140395272804944) 13:38:06 task_gen posted bfmt72s 13:38:06 task_gen posting 140395272802576 13:38:06 task_gen -> process_rule (140395272802576) 13:38:06 task_gen -> process_source (140395272802576) 13:38:06 task_gen -> apply_link (140395272802576) 13:38:06 task_gen -> process_use (140395272802576) 13:38:06 task_gen -> propagate_uselib_vars (140395272802576) 13:38:06 task_gen -> apply_incpaths (140395272802576) 13:38:06 task_gen -> check_err_features (140395272802576) 13:38:06 task_gen -> check_err_order (140395272802576) 13:38:06 task_gen -> create_task_macapp (140395272802576) 13:38:06 task_gen -> create_task_macplist (140395272802576) 13:38:06 task_gen -> set_macosx_deployment_target (140395272802576) 13:38:06 task_gen posted nss2v_v3 13:38:06 task_gen posting 140395272805456 13:38:06 task_gen -> process_rule (140395272805456) 13:38:06 task_gen -> process_source (140395272805456) 13:38:06 task_gen -> apply_link (140395272805456) 13:38:06 task_gen -> process_use (140395272805456) 13:38:06 task_gen -> propagate_uselib_vars (140395272805456) 13:38:06 task_gen -> apply_incpaths (140395272805456) 13:38:06 task_gen -> check_err_features (140395272805456) 13:38:06 task_gen -> check_err_order (140395272805456) 13:38:06 task_gen -> create_task_macapp (140395272805456) 13:38:06 task_gen -> create_task_macplist (140395272805456) 13:38:06 task_gen -> set_macosx_deployment_target (140395272805456) 13:38:06 task_gen posted myrealigner 13:38:06 task_gen posting 140395272805584 13:38:06 task_gen -> process_rule (140395272805584) 13:38:06 task_gen -> process_source (140395272805584) 13:38:06 task_gen -> apply_link (140395272805584) 13:38:06 task_gen -> process_use (140395272805584) 13:38:06 task_gen -> propagate_uselib_vars (140395272805584) 13:38:06 task_gen -> apply_incpaths (140395272805584) 13:38:06 task_gen -> check_err_features (140395272805584) 13:38:06 task_gen -> check_err_order (140395272805584) 13:38:06 task_gen -> create_task_macapp (140395272805584) 13:38:06 task_gen -> create_task_macplist (140395272805584) 13:38:06 task_gen -> set_macosx_deployment_target (140395272805584) 13:38:06 task_gen posted m52bfmt7 13:38:06 envhash d751713988987e9331980363e24189ce [] 13:38:06 task task {task 140395272804880: inst ca_ikki_v5.pl,dumbbell_filter.pl,ezez4qsub_vx1.pl,ezez_vx1.pl,fa2fq.pl,fq2fa.pl,fq2idfq.pl,fqfilt.pl,get_top_20x_fa.pl,partition_fa.pl,ezez4makefile_v4.pl,get_target_fasta_records.pl,dfq2fq_v2.pl,extract_fq.pl,check_redundancy.pl,check_circularity.pl,bfmtx2m4.pl -> } must run as it was never run before or the task code changed 13:38:06 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:06 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/ca_ikki_v5.pl (from ca_ikki_v5.pl) 13:38:06 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:06 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] 13:38:06 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:06 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] 13:38:06 envhash 4669941ea75142db4527d6efcb0a4d3e [[], [], ['/usr/bin/gcc'], [], [], ['-c', '-o'], ['-Wdate-time', '-D_FORTIFY_SOURCE=2', '-g', '-O2', '-ffile-prefix-map=/build/sprai-0.9.9.23+dfsg=.', '-fstack-protector-strong', '-Wformat', '-Werror=format-security', '-O3', '-Wall'], [], '-I%s', [], '-D%s', [], [], ['/build/sprai-0.9.9.23+dfsg/build', '/build/sprai-0.9.9.23+dfsg']] 13:38:06 envhash f7839cee77a5b286c2a578e4ca169fce [[], [], [], ['-o'], [], [], [], [], [], [], '-L%s', '-l%s', [], ['-Wl,-z,relro'], ['/usr/bin/gcc'], [], '-Wl,-rpath,%s', '-Wl,-Bdynamic', [], [], '-L%s', '-Wl,-Bstatic', '-l%s'] 13:38:06 envhash d751713988987e9331980363e24189ce [] 13:38:06 task task {task 140395272925264: inst bfmt72s -> } must run as it was never run before or the task code changed 13:38:06 envhash d751713988987e9331980363e24189ce [] 13:38:06 task task {task 140395272925584: inst nss2v_v3 -> } must run as it was never run before or the task code changed + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/dumbbell_filter.pl (from dumbbell_filter.pl) 13:38:06 envhash d751713988987e9331980363e24189ce [] + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/bfmt72s (from build/bfmt72s) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/nss2v_v3 (from build/nss2v_v3) 13:38:06 task task {task 140395272925904: inst myrealigner -> } must run as it was never run before or the task code changed 13:38:06 envhash d751713988987e9331980363e24189ce [] 13:38:06 task task {task 140395272926224: inst m52bfmt7 -> } must run as it was never run before or the task code changed + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/myrealigner (from build/myrealigner) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/ezez4qsub_vx1.pl (from ezez4qsub_vx1.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/m52bfmt7 (from build/m52bfmt7) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/ezez_vx1.pl (from ezez_vx1.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/fa2fq.pl (from fa2fq.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/fq2fa.pl (from fq2fa.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/fq2idfq.pl (from fq2idfq.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/fqfilt.pl (from fqfilt.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/get_top_20x_fa.pl (from get_top_20x_fa.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/partition_fa.pl (from partition_fa.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/ezez4makefile_v4.pl (from ezez4makefile_v4.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/get_target_fasta_records.pl (from get_target_fasta_records.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/dfq2fq_v2.pl (from dfq2fq_v2.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/extract_fq.pl (from extract_fq.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/check_redundancy.pl (from check_redundancy.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/check_circularity.pl (from check_circularity.pl) + install /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin/bfmtx2m4.pl (from bfmtx2m4.pl) Waf: Leaving directory `/build/sprai-0.9.9.23+dfsg/build' 'install' finished successfully (0.052s) make[1]: Leaving directory '/build/sprai-0.9.9.23+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/sprai-0.9.9.23+dfsg' mkdir -p /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/lib/sprai cd /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin \ && mv * ../lib/sprai/ \ && mv ../lib/sprai/ezez* . cd /build/sprai-0.9.9.23+dfsg/debian/sprai/usr/bin \ && \ for script in *; \ do \ mv $script $(basename $script .pl) \ && ln -sf $(basename $script .pl) $script; \ done dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/sprai-0.9.9.23+dfsg' dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/sprai-0.9.9.23+dfsg' dh_installchangelogs doc/_build/html/_sources/index.txt make[1]: Leaving directory '/build/sprai-0.9.9.23+dfsg' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/sprai-0.9.9.23+dfsg' dh_installman --language=C make[1]: Leaving directory '/build/sprai-0.9.9.23+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg-2_amd64.deb'. dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../sprai_0.9.9.23+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/54796 and its subdirectories I: Current time: Mon Jan 10 13:38:11 -12 2022 I: pbuilder-time-stamp: 1641865091 Tue Dec 8 19:15:11 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Dec 8 19:15:11 UTC 2020 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Dec 8 19:15:47 UTC 2020 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Dec 8 19:15:47 UTC 2020 I: sprai_0.9.9.23+dfsg-2_amd64.changes: Format: 1.8 Date: Mon, 07 Jan 2019 13:20:54 +0100 Source: sprai Binary: sprai sprai-dbgsym Architecture: amd64 Version: 0.9.9.23+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: sprai - single-pass sequencing read accuracy improver Changes: sprai (0.9.9.23+dfsg-2) unstable; urgency=medium . * Team upload. * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * Secure URI in copyright format * Remove trailing whitespace in debian/copyright * Fix Perl interpreter path Checksums-Sha1: 03f9bcda69430cfb6f21110c0bda3e6ee6b9b1aa 81852 sprai-dbgsym_0.9.9.23+dfsg-2_amd64.deb 07451d0d34c89daec77de666d88d188b8d275be3 5187 sprai_0.9.9.23+dfsg-2_amd64.buildinfo a0efbffa0238805d2d542cc3210114c00a9988e3 1516160 sprai_0.9.9.23+dfsg-2_amd64.deb Checksums-Sha256: 2b3099ecbcb823cebcb39d5320028f248c44821d2a155d85607196576d1e51cf 81852 sprai-dbgsym_0.9.9.23+dfsg-2_amd64.deb 2e5d24c810336fc15969590675583922e181535482880ec9ce2c4b377bd1928d 5187 sprai_0.9.9.23+dfsg-2_amd64.buildinfo bd889e1b11d1478a5a354af8aaef714d3aeb535b64eb0e882d014ac5aab426f2 1516160 sprai_0.9.9.23+dfsg-2_amd64.deb Files: 4e5f9705b72f67607cb61a264e6da240 81852 debug optional sprai-dbgsym_0.9.9.23+dfsg-2_amd64.deb 1e3f04a909e3d75686f6ccff4ee26b5b 5187 science optional sprai_0.9.9.23+dfsg-2_amd64.buildinfo 48e16dddcecc9a0baa8845f1213b98c1 1516160 science optional sprai_0.9.9.23+dfsg-2_amd64.deb Tue Dec 8 19:15:48 UTC 2020 I: diffoscope 162 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.20ZRrtsYrP/sprai_0.9.9.23+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.20ZRrtsYrP/sprai_0.9.9.23+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.20ZRrtsYrP/sprai_0.9.9.23+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.20ZRrtsYrP/b1/sprai_0.9.9.23+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.20ZRrtsYrP/b2/sprai_0.9.9.23+dfsg-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.288s) 0.288s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.047s) 0.046s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Dec 8 19:15:50 UTC 2020 I: diffoscope 162 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 8 19:15:50 UTC 2020 I: sprai from buster built successfully and reproducibly on amd64. Tue Dec 8 19:15:51 UTC 2020 I: Submitting .buildinfo files to external archives: Tue Dec 8 19:15:51 UTC 2020 I: Submitting 8.0K b1/sprai_0.9.9.23+dfsg-2_amd64.buildinfo.asc Tue Dec 8 19:15:52 UTC 2020 I: Submitting 8.0K b2/sprai_0.9.9.23+dfsg-2_amd64.buildinfo.asc Tue Dec 8 19:15:52 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 8 19:15:52 UTC 2020 I: Done submitting .buildinfo files. Tue Dec 8 19:15:52 UTC 2020 I: Removing signed sprai_0.9.9.23+dfsg-2_amd64.buildinfo.asc files: removed './b1/sprai_0.9.9.23+dfsg-2_amd64.buildinfo.asc' removed './b2/sprai_0.9.9.23+dfsg-2_amd64.buildinfo.asc'