Wed Dec 15 08:18:24 UTC 2021 I: starting to build snakemake/buster/amd64 on jenkins on '2021-12-15 08:18' Wed Dec 15 08:18:24 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/94908/console.log Wed Dec 15 08:18:24 UTC 2021 I: Downloading source for buster/snakemake=5.4.0-1 --2021-12-15 08:18:24-- http://deb.debian.org/debian/pool/main/s/snakemake/snakemake_5.4.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2400 (2.3K) Saving to: ‘snakemake_5.4.0-1.dsc’ 0K .. 100% 154M=0s 2021-12-15 08:18:24 (154 MB/s) - ‘snakemake_5.4.0-1.dsc’ saved [2400/2400] Wed Dec 15 08:18:24 UTC 2021 I: snakemake_5.4.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snakemake Binary: snakemake Architecture: all Version: 5.4.0-1 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray Homepage: https://bitbucket.org/snakemake/snakemake Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/snakemake Vcs-Git: https://salsa.debian.org/med-team/snakemake.git Build-Depends: debhelper (>= 11~), dh-python, ca-certificates, python3, python3-boto, python3-configargparse, python3-datrie, python3-git, python3-jsonschema, python3-networkx, python3-nose, python3-pandas, python3-psutil, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-rpy2, python3-setuptools, python3-sphinx, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-wrapt, python3-yaml, r-cran-rmarkdown Package-List: snakemake deb science optional arch=all Checksums-Sha1: 2e25c1a5a8186d1a669b2c90b8d5ea3e1d5bbb2e 11085322 snakemake_5.4.0.orig.tar.gz d0802e533eac2c6111576adc2b1f1833636c096b 265980 snakemake_5.4.0-1.debian.tar.xz Checksums-Sha256: 62205639e144b525df6ec5ca28060145c38c643bf42c96b25a68eb46ac54b564 11085322 snakemake_5.4.0.orig.tar.gz ec5ca71bf19f4feec641ed0e72e603009a288d46c951ad317d3f49c5d9921bc7 265980 snakemake_5.4.0-1.debian.tar.xz Files: 3792f9544900e58f63a0423392c8f2a6 11085322 snakemake_5.4.0.orig.tar.gz 221554a429b523f80a8af389fa741d23 265980 snakemake_5.4.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAlwvLaYSHGRhaXNzaUBk ZWJpYW4ub3JnAAoJEGEu8WE+BQ9Um9sQAJHHqOC8QUPk3gDgr2lRlLB5t3H0srn/ QMrttalqm2XuHbCGFGkUR0uqy/Mr4hFg4UaKMX5QrjBSr6T4EuCa7wdy1DYDZ2DZ DBOP7hog6MxfvflbKO7aFxWrj7vgNUKa6TJljTEkqdKUnZ5jKyODJffdXtY8QJhf 3p+gJnnDYrjGTvoTu1ClpUEUvlrY1UrlE/z2FJpjvQDsTgjlw45rmVEwjm0fQnwr ReeMuADb1f6j7SMYb1Whb6ET1n4prVpJ01mYCrFtooDIYyq46p9h1jB8nrcn4pC8 I0Kqx3+oXtp5lxQA2W/HADOC/KxwFEAjdr6Up8+18O9bzATUBSQhytjBrgnKExeQ PL6KD88YARyB3wuXPLglqu//ehkjjmxZbL0fhnE8EIiLPX/M713t7e65WP653CWV bpeV8L8jMmhoVOTml9brce3pb0K4C8g/HoxeWwB8SKGExR8/Tx7hvSjBU/V1bT7o dOkft4Ik30RdewULuxqJ+jpzg+JIiyplkFLJ7RoyazERK4XXDqajReYfVeawfH83 QDsHB3DK0JYyRnn6xwSdkgg0HkNeMS9Lk9uzZdExz7Jnl3H+uVsR47NyYDsH+0ec XWiw1yDG4gcqXokMkTwogvcEggbFa7JyuOk0LRb5Eci8prAV71cy1BO++cU6jO2v StnQDQ47Z5dq =Ca7E -----END PGP SIGNATURE----- Wed Dec 15 08:18:24 UTC 2021 I: Checking whether the package is not for us Wed Dec 15 08:18:24 UTC 2021 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed Dec 15 08:18:24 UTC 2021 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed Dec 15 08:20:46 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 14 20:18:26 -12 2021 I: pbuilder-time-stamp: 1639556306 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [snakemake_5.4.0-1.dsc] I: copying [./snakemake_5.4.0.orig.tar.gz] I: copying [./snakemake_5.4.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 3 21:55:50 2019 -12 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snakemake_5.4.0-1.dsc dpkg-source: info: extracting snakemake in snakemake-5.4.0 dpkg-source: info: unpacking snakemake_5.4.0.orig.tar.gz dpkg-source: info: unpacking snakemake_5.4.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-the-inbuild-sphinx.ext.napoleon.patch dpkg-source: info: applying 0003-Use-debian-s-mathjax-package.patch dpkg-source: info: applying 0003-Compat-fix.patch dpkg-source: info: applying 0006-restore-bin.patch dpkg-source: info: applying 0008-remove_sphinx.ext.patch dpkg-source: info: applying 0009-skip-test-without-google-cloud-sdk.patch dpkg-source: info: applying 0011-fix-privacy-breach.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2206272/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='11cfbeb6fef6492183f5a96a1eac5a30' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2206272' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Md4JQEgGmJ/pbuilderrc_xFJA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Md4JQEgGmJ/b1 --logfile b1/build.log snakemake_5.4.0-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 7 09:58 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2206272/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, ca-certificates, python3, python3-boto, python3-configargparse, python3-datrie, python3-git, python3-jsonschema, python3-networkx, python3-nose, python3-pandas, python3-psutil, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-rpy2, python3-setuptools, python3-sphinx, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-wrapt, python3-yaml, r-cran-rmarkdown dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on ca-certificates; however: Package ca-certificates is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-boto; however: Package python3-boto is not installed. pbuilder-satisfydepends-dummy depends on python3-configargparse; however: Package python3-configargparse is not installed. pbuilder-satisfydepends-dummy depends on python3-datrie; however: Package python3-datrie is not installed. pbuilder-satisfydepends-dummy depends on python3-git; however: Package python3-git is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-pygraphviz; however: Package python3-pygraphviz is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytools; however: Package python3-pytools is not installed. pbuilder-satisfydepends-dummy depends on python3-ratelimiter; however: Package python3-ratelimiter is not installed. pbuilder-satisfydepends-dummy depends on python3-recommonmark; however: Package python3-recommonmark is not installed. pbuilder-satisfydepends-dummy depends on python3-rpy2; however: Package python3-rpy2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-bootstrap-theme; however: Package python3-sphinx-bootstrap-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-wrapt; however: Package python3-wrapt is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-mathjax{a} fonts-roboto-slab{a} gettext{a} gettext-base{a} git{a} git-man{a} graphviz{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libc-ares2{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcroco3{a} libcurl3-gnutls{a} libcurl4{a} libdatrie1{a} libelf1{a} liberror-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgd3{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libice6{a} libicu63{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-prettify{a} libjs-sifter.js{a} libjs-sphinxdoc{a} libjs-twitter-bootstrap-datepicker{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libltdl7{a} liblua5.1-0{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libnode64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpcre2-8-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxdot4{a} libxext6{a} libxft2{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} littler{a} lsb-base{a} m4{a} man-db{a} mime-support{a} node-highlight.js{a} node-normalize.css{a} nodejs{a} openssl{a} pandoc{a} pandoc-data{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-appdirs{a} python3-atomicwrites{a} python3-attr{a} python3-babel{a} python3-boto{a} python3-certifi{a} python3-chardet{a} python3-commonmark-bkrs{a} python3-configargparse{a} python3-dateutil{a} python3-datrie{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-git{a} python3-gitdb{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-jsonschema{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-psutil{a} python3-py{a} python3-pygments{a} python3-pygraphviz{a} python3-pyparsing{a} python3-pytest{a} python3-pytools{a} python3-ratelimiter{a} python3-recommonmark{a} python3-requests{a} python3-roman{a} python3-rpy2{a} python3-setuptools{a} python3-six{a} python3-smmap{a} python3-sphinx{a} python3-sphinx-bootstrap-theme{a} python3-sphinx-rtd-theme{a} python3-tz{a} python3-urllib3{a} python3-wrapt{a} python3-yaml{a} python3.7{a} python3.7-minimal{a} r-base-core{a} r-cran-base64enc{a} r-cran-crayon{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-glue{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-later{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mime{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tinytex{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-liberation javascript-common krb5-locales less libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libgts-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx nodejs-doc openssh-client publicsuffix python3-bs4 python3-gdal python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-pil python3-scipy python3-tables r-base-dev r-cran-codetools r-cran-htmlwidgets r-cran-mockery r-cran-sp r-cran-testit r-cran-testthat r-cran-tikzdevice r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 254 newly installed, 0 to remove and 0 not upgraded. Need to get 156 MB of archives. After unpacking 623 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 sgml-base all 1.29 [14.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 fonts-roboto-slab all 1.100263+20170512-1 [207 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libpcre2-8-0 amd64 10.32-5 [213 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 liberror-perl all 0.17027-2 [30.9 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 git-man all 1:2.20.1-2+deb10u3 [1620 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 git amd64 1:2.20.1-2+deb10u3 [5633 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 libjs-es5-shim all 4.5.12-1 [42.6 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libjs-highlight.js all 9.12.0+dfsg1-4+deb10u1 [300 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libjs-sifter.js all 0.5.3+dfsg-1 [11.9 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1 [3430 B] Get: 142 http://deb.debian.org/debian buster/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1 [51.9 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libjs-json all 0~20180723-2 [29.3 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 libjs-modernizr all 2.6.2+ds1-3 [46.7 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [32.0 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get: 166 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 node-highlight.js all 9.12.0+dfsg1-4+deb10u1 [237 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 pandoc-data all 2.2.1-3 [329 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 pandoc amd64 2.2.1-3+b2 [14.7 MB] Get: 172 http://deb.debian.org/debian buster/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 python3-alabaster all 0.7.8-1 [18.4 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 python3-appdirs all 1.4.3-1 [12.0 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 python3-atomicwrites all 1.1.5-2 [6892 B] Get: 176 http://deb.debian.org/debian buster/main amd64 python3-attr all 18.2.0-1 [37.3 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 python3-boto all 2.44.0-1.1 [740 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 python3-commonmark-bkrs all 0.5.4+ds-2 [28.2 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 python3-configargparse all 0.13.0-1 [22.5 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 python3-datrie amd64 0.7.1-2 [155 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 python3-roman all 2.0.0-3 [8768 B] Get: 193 http://deb.debian.org/debian buster/main amd64 python3-docutils all 0.14+dfsg-4 [378 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 python3-smmap all 2.0.5-1 [21.2 kB] Get: 195 http://deb.debian.org/debian buster/main amd64 python3-gitdb all 2.0.5-1 [46.8 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 python3-git all 2.1.11-1 [304 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 python3-imagesize all 1.0.0-1 [4960 B] Get: 198 http://deb.debian.org/debian buster/main amd64 python3-markupsafe amd64 1.1.0-1 [14.8 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 python3-jinja2 all 2.10-2 [106 kB] Get: 200 http://deb.debian.org/debian buster/main amd64 python3-jsonschema all 2.6.0-4 [33.5 kB] Get: 201 http://deb.debian.org/debian buster/main amd64 python3-more-itertools all 4.2.0-1 [42.2 kB] Get: 202 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get: 203 http://deb.debian.org/debian buster/main amd64 python3-nose all 1.3.7-4 [132 kB] Get: 204 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get: 205 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 206 http://deb.debian.org/debian buster/main amd64 python3-packaging all 19.0-1 [20.5 kB] Get: 207 http://deb.debian.org/debian buster/main amd64 python3-pandas-lib amd64 0.23.3+dfsg-3 [3475 kB] Get: 208 http://deb.debian.org/debian buster/main amd64 python3-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 209 http://deb.debian.org/debian buster/main amd64 python3-pluggy all 0.8.0-1 [20.6 kB] Get: 210 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get: 211 http://deb.debian.org/debian buster/main amd64 python3-py all 1.7.0-2 [86.6 kB] Get: 212 http://deb.debian.org/debian buster/main amd64 python3-pygments all 2.3.1+dfsg-1+deb10u2 [594 kB] Get: 213 http://deb.debian.org/debian buster/main amd64 python3-pygraphviz amd64 1.5-1 [76.6 kB] Get: 214 http://deb.debian.org/debian buster/main amd64 python3-pytest all 3.10.1-2 [243 kB] Get: 215 http://deb.debian.org/debian buster/main amd64 python3-pytools all 2019.1-1 [39.0 kB] Get: 216 http://deb.debian.org/debian buster/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get: 217 http://deb.debian.org/debian buster/main amd64 python3-recommonmark all 0.4.0+ds-5 [14.9 kB] Get: 218 http://deb.debian.org/debian buster/main amd64 python3-rpy2 amd64 2.9.5-1 [167 kB] Get: 219 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get: 220 http://deb.debian.org/debian buster/main amd64 sphinx-common all 1.8.4-1 [500 kB] Get: 221 http://deb.debian.org/debian buster/main amd64 python3-sphinx all 1.8.4-1 [481 kB] Get: 222 http://deb.debian.org/debian buster/main amd64 python3-sphinx-bootstrap-theme all 0.6.5-1 [422 kB] Get: 223 http://deb.debian.org/debian buster/main amd64 sphinx-rtd-theme-common all 0.4.3+dfsg-1 [1021 kB] Get: 224 http://deb.debian.org/debian buster/main amd64 python3-sphinx-rtd-theme all 0.4.3+dfsg-1 [9696 B] Get: 225 http://deb.debian.org/debian buster/main amd64 python3-wrapt amd64 1.10.11-1 [36.9 kB] Get: 226 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get: 227 http://deb.debian.org/debian buster/main amd64 r-cran-base64enc amd64 0.1-3-2 [27.7 kB] Get: 228 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get: 229 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get: 230 http://deb.debian.org/debian buster/main amd64 r-cran-evaluate all 0.13-1 [78.5 kB] Get: 231 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get: 232 http://deb.debian.org/debian buster/main amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB] Get: 233 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get: 234 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get: 235 http://deb.debian.org/debian buster/main amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB] Get: 236 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get: 237 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get: 238 http://deb.debian.org/debian buster/main amd64 r-cran-later amd64 0.7.5+dfsg-2 [71.1 kB] Get: 239 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get: 240 http://deb.debian.org/debian buster/main amd64 r-cran-promises amd64 1.0.1-2 [161 kB] Get: 241 http://deb.debian.org/debian buster/main amd64 r-cran-httpuv amd64 1.4.5.1+dfsg-1 [292 kB] Get: 242 http://deb.debian.org/debian buster/main amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get: 243 http://deb.debian.org/debian buster/main amd64 r-cran-mime amd64 0.6-1 [35.1 kB] Get: 244 http://deb.debian.org/debian buster/main amd64 r-cran-markdown amd64 0.9+dfsg-1 [126 kB] Get: 245 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get: 246 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get: 247 http://deb.debian.org/debian buster/main amd64 r-cran-yaml amd64 2.2.0-1 [101 kB] Get: 248 http://deb.debian.org/debian buster/main amd64 r-cran-xfun all 0.4-1 [145 kB] Get: 249 http://deb.debian.org/debian buster/main amd64 r-cran-knitr all 1.21+dfsg-2 [855 kB] Get: 250 http://deb.debian.org/debian buster/main amd64 r-cran-tinytex all 0.10-1 [89.6 kB] Get: 251 http://deb.debian.org/debian buster/main amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get: 252 http://deb.debian.org/debian buster/main amd64 r-cran-sourcetools amd64 0.1.7-2 [45.2 kB] Get: 253 http://deb.debian.org/debian buster/main amd64 r-cran-shiny all 1.2.0+dfsg-1 [3013 kB] Get: 254 http://deb.debian.org/debian buster/main amd64 r-cran-rmarkdown all 1.11+dfsg-1 [2271 kB] Fetched 156 MB in 4s (40.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../06-fonts-lato_2.0-2_all.deb ... Unpacking fonts-lato (2.0-2) ... Selecting previously unselected package node-normalize.css. Preparing to unpack .../07-node-normalize.css_8.0.1-3_all.deb ... Unpacking node-normalize.css (8.0.1-3) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../08-libssl1.1_1.1.1d-0+deb10u7_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Selecting previously unselected package libpython3.7-minimal:amd64. Preparing to unpack .../09-libpython3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../10-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../11-python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20133 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../4-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../5-libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../6-python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20594 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../004-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../008-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... 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Setting up lsb-base (10.2019051400) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up fonts-lato (2.0-2) ... Setting up fonts-mathjax (2.7.4+dfsg-1) ... Setting up mime-support (3.62) ... Setting up libjs-mathjax (2.7.4+dfsg-1) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.5.3+dfsg-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... Setting up unzip (6.0-23+deb10u2) ... Setting up libbrotli1:amd64 (1.0.7-2+deb10u1) ... Setting up liblab-gamut1 (2.40.1-6+deb10u1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up fonts-roboto-slab (1.100263+20170512-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1) ... Setting up libc-ares2:amd64 (1.14.0-1+deb10u1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libjs-modernizr (2.6.2+ds1-3) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libjs-es5-shim (4.5.12-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up liberror-perl (0.17027-2) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up zip (3.0-11+b1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libpathplan4 (2.40.1-6+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Setting up libjs-d3 (3.5.17-2) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcre2-8-0:amd64 (10.32-5) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libjs-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up git-man (1:2.20.1-2+deb10u3) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up sgml-base (1.29) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up pandoc-data (2.2.1-3) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up openssl (1.1.1d-0+deb10u7) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up sphinx-rtd-theme-common (0.4.3+dfsg-1) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libjs-bootstrap (3.4.1+dfsg-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up nodejs (10.24.0~dfsg-1~deb10u1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up libjs-jquery-datatables (1.10.19+dfsg-1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up pandoc (2.2.1-3+b2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up xml-core (0.18+nmu1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (1.1.0-1) ... Setting up python3-psutil (5.5.1-1) ... Setting up python3-tz (2019.1-1) ... Setting up python3-atomicwrites (1.1.5-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-pygments (2.3.1+dfsg-1+deb10u2) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-wrapt (1.10.11-1) ... Setting up git (1:2.20.1-2+deb10u3) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-pluggy (0.8.0-1) ... Setting up python3-commonmark-bkrs (0.5.4+ds-2) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python3-datrie:amd64 (0.7.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-appdirs (1.4.3-1) ... Setting up python3-smmap (2.0.5-1) ... Setting up python3-imagesize (1.0.0-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python3-more-itertools (4.2.0-1) ... Setting up python3-configargparse (0.13.0-1) ... Setting up python3-attr (18.2.0-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python3-py (1.7.0-2) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pytest (3.10.1-2) ... Setting up python3-alabaster (0.7.8-1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python3-yaml (3.13-2) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up python3-gitdb (2.0.5-1) ... Setting up python3-networkx (2.2-1) ... Setting up python3-nose (1.3.7-4) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up python3-packaging (19.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-jsonschema (2.6.0-4) ... update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up python3-sphinx-bootstrap-theme (0.6.5-1) ... Setting up python3-git (2.1.11-1) ... Setting up python3-requests (2.21.0-1) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python3-boto (2.44.0-1.1) ... Setting up python3-pandas-lib (0.23.3+dfsg-3) ... Setting up python3-pandas (0.23.3+dfsg-3) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up r-cran-sourcetools (0.1.7-2) ... Setting up python3-pytools (2019.1-1) ... Setting up python3-rpy2 (2.9.5-1) ... Setting up r-cran-r6 (2.4.0-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-cran-littler (0.3.6-1) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-cran-rlang (0.3.1-2) ... Setting up littler (0.3.6-1) ... Setting up r-cran-xfun (0.4-1) ... Setting up r-cran-mime (0.6-1) ... Setting up r-cran-base64enc (0.1-3-2) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-yaml (2.2.0-1) ... Setting up r-cran-evaluate (0.13-1) ... Setting up r-cran-highr (0.7+dfsg-1) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-xtable (1:1.8-3-1) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up r-cran-stringi (1.2.4-2) ... Setting up r-cran-markdown (0.9+dfsg-1) ... Setting up r-cran-later (0.7.5+dfsg-2) ... Setting up r-cran-htmltools (0.3.6-2) ... Setting up r-cran-tinytex (0.10-1) ... Setting up python3-pygraphviz (1.5-1) ... Setting up r-cran-stringr (1.4.0-1) ... Setting up r-cran-promises (1.0.1-2) ... Setting up r-cran-knitr (1.21+dfsg-2) ... Setting up r-cran-httpuv (1.4.5.1+dfsg-1) ... Setting up r-cran-shiny (1.2.0+dfsg-1) ... Setting up r-cran-rmarkdown (1.11+dfsg-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-recommonmark (0.4.0+ds-5) ... Setting up python3-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python3-sphinx-rtd-theme (0.4.3+dfsg-1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/snakemake-5.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_5.4.0-1_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 5.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/snakemake-5.4.0' dh_auto_build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/wrapper.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/workflow.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/utils.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/stats.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/singularity.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/shell.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/script.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/scheduler.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/rules.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/persistence.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/parser.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/output_index.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/logging.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/jobs.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/io.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/gui.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/executors.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/exceptions.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/decorators.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/dag.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/cwl.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/conda.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/common.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/checkpoints.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/benchmark.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/_version.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/__main__.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/__init__.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake creating /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/webdav.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/iRODS.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/gridftp.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/gfal.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/dropbox.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/__init__.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/XRootD.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/SFTP.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/S3Mocked.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/S3.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/NCBI.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/HTTP.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/GS.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/FTP.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/EGA.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote creating /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/report copying snakemake/report/__init__.py -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/report copying snakemake/report.css -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/jobscript.sh -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/gui.html -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/report/report.html -> /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/report UPDATING /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py set /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py to '5.4.0' PATH=/build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/bin:/build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/bin:/build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ PYTHONPATH=/build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build \ python3 setup.py build_sphinx running build_sphinx Running Sphinx v1.8.4 making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 26 source files that are out of date updating environment: 26 added, 0 changed, 0 removed reading sources... [ 3%] api_reference/snakemake reading sources... [ 7%] api_reference/snakemake_utils reading sources... [ 11%] executable reading sources... [ 15%] getting_started/examples reading sources... [ 19%] getting_started/installation reading sources... [ 23%] index reading sources... [ 26%] project_info/authors reading sources... [ 30%] project_info/citations reading sources... [ 34%] project_info/contributing reading sources... [ 38%] project_info/faq reading sources... [ 42%] project_info/history reading sources... [ 46%] project_info/license reading sources... [ 50%] project_info/more_resources reading sources... [ 53%] snakefiles/configuration reading sources... [ 57%] snakefiles/deployment reading sources... [ 61%] snakefiles/modularization reading sources... [ 65%] snakefiles/remote_files reading sources... [ 69%] snakefiles/reporting reading sources... [ 73%] snakefiles/rules reading sources... [ 76%] snakefiles/utils reading sources... [ 80%] snakefiles/writing_snakefiles reading sources... [ 84%] tutorial/additional_features reading sources... [ 88%] tutorial/advanced reading sources... [ 92%] tutorial/basics reading sources... [ 96%] tutorial/setup reading sources... [100%] tutorial/tutorial /build/snakemake-5.4.0/docs/executable.rst:322: WARNING: Unknown directive type "argparse". .. argparse:: :module: snakemake :func: get_argument_parser :prog: snakemake All command line options can be printed by calling ``snakemake -h``. /build/snakemake-5.4.0/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.4.0/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.4.0/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.4.0/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.4.0/docs/project_info/history.rst:7: WARNING: Duplicate explicit target name: "the docs". /build/snakemake-5.4.0/docs/snakefiles/modularization.rst:7: WARNING: Duplicate explicit target name: "cwl". /build/snakemake-5.4.0/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /build/snakemake-5.4.0/docs/tutorial/basics.rst:369: WARNING: Title underline too short. Step 6: Using custom scripts :::::::::::::::::::: /build/snakemake-5.4.0/docs/tutorial/basics.rst:369: WARNING: Title underline too short. Step 6: Using custom scripts :::::::::::::::::::: /build/snakemake-5.4.0/docs/tutorial/basics.rst:371: WARNING: Mismatch: both interpreted text role prefix and reference suffix. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] api_reference/snakemake writing output... [ 7%] api_reference/snakemake_utils writing output... [ 11%] executable writing output... [ 15%] getting_started/examples writing output... [ 19%] getting_started/installation writing output... [ 23%] index writing output... [ 26%] project_info/authors writing output... [ 30%] project_info/citations writing output... [ 34%] project_info/contributing writing output... [ 38%] project_info/faq writing output... [ 42%] project_info/history writing output... [ 46%] project_info/license writing output... [ 50%] project_info/more_resources writing output... [ 53%] snakefiles/configuration writing output... [ 57%] snakefiles/deployment writing output... [ 61%] snakefiles/modularization writing output... [ 65%] snakefiles/remote_files writing output... [ 69%] snakefiles/reporting writing output... [ 73%] snakefiles/rules writing output... [ 76%] snakefiles/utils writing output... [ 80%] snakefiles/writing_snakefiles writing output... [ 84%] tutorial/additional_features writing output... [ 88%] tutorial/advanced writing output... [ 92%] tutorial/basics writing output... [ 96%] tutorial/setup writing output... [100%] tutorial/tutorial /build/snakemake-5.4.0/docs/tutorial/advanced.rst:206: WARNING: undefined label: tutorial-report (if the link has no caption the label must precede a section header) generating indices... genindex py-modindex highlighting module code... [ 50%] snakemake highlighting module code... [100%] snakemake.utils writing additional pages... search copying images... [ 16%] getting_started/img/cufflinks-dag.png copying images... [ 33%] getting_started/img/c-dag.png copying images... [ 50%] getting_started/img/latex-dag.png copying images... [ 66%] project_info/img/idea.png copying images... [ 83%] tutorial/workflow/dag_index.png copying images... [100%] tutorial/workflow/dag_call.png copying downloadable files... [100%] tests/test_report/report.html copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 12 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/build/snakemake-5.4.0' dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:272: chmod +x /build/snakemake-5.4.0/bin/snakemake; cp -r /build/snakemake-5.4.0/bin /build/snakemake-5.4.0/tests /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build I: pybuild base:217: cd /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build; python3.7 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.7.3, pytest-3.10.1, py-1.7.0, pluggy-0.8.0 rootdir: /build/snakemake-5.4.0, inifile: collected 4 items tests/test_io.py . [ 25%] tests/test_schema.py ... [100%] =============================== warnings summary =============================== snakemake/__init__.py:570 /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__init__.py:570: DeprecationWarning: invalid escape sequence \w valid = re.compile("[a-zA-Z_]\w*$") snakemake/__init__.py:597 /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__init__.py:597: DeprecationWarning: invalid escape sequence \w valid = re.compile("[a-zA-Z_]\w*$") snakemake/rules.py:11 /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/rules.py:11: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import defaultdict, Iterable snakemake/io.py:878 /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/io.py:878: DeprecationWarning: invalid escape sequence \+ file_sub = re.sub("^git\+file:/+",'/',path) snakemake/utils.py:13 /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/utils.py:13: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import Mapping snakemake/script.py:29 /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/script.py:29: DeprecationWarning: invalid escape sequence \d PY_VER_RE = re.compile("Python (?P\d+\.\d+).*") /usr/lib/python3/dist-packages/pandas/core/tools/datetimes.py:3 /usr/lib/python3/dist-packages/pandas/core/tools/datetimes.py:3: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import MutableMapping .pybuild/cpython3_3.7_snakemake/build/tests/test_schema.py::test_config /usr/lib/python3/dist-packages/jsonschema/compat.py:6: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import MutableMapping, Sequence # noqa -- Docs: https://docs.pytest.org/en/latest/warnings.html ===================== 4 passed, 8 warnings in 1.98 seconds ===================== I: pybuild pybuild:298: rm -fr /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/bin /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/tests create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/snakemake-5.4.0/debian/snakemake running install running build running build_py UPDATING /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py set /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py to '5.4.0' running install_lib creating /build/snakemake-5.4.0/debian/snakemake/usr creating /build/snakemake-5.4.0/debian/snakemake/usr/lib creating /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7 creating /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages creating /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake creating /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/checkpoints.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/cwl.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/persistence.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/parser.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/stats.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/executors.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/scheduler.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/output_index.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/script.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/wrapper.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/jobs.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/dag.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/conda.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/singularity.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/utils.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/shell.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/exceptions.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/io.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/rules.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/_version.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/common.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/logging.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/workflow.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/__init__.cpython-37.pyc -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/gui.html -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/jobscript.sh -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/report.css -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake creating /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/report/report.html -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/report/__init__.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report creating /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/EGA.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/FTP.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/GS.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/HTTP.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/NCBI.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/S3.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/S3Mocked.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/SFTP.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/XRootD.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/__init__.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/dropbox.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/gfal.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/gridftp.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/iRODS.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/webdav.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__init__.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/__main__.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/benchmark.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/checkpoints.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/common.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/conda.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/cwl.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/dag.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/decorators.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/exceptions.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/executors.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/gui.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/io.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/jobs.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/logging.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/output_index.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/parser.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/persistence.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/rules.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/scheduler.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/script.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/shell.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/singularity.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/stats.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/utils.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/workflow.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /build/snakemake-5.4.0/.pybuild/cpython3_3.7_snakemake/build/snakemake/wrapper.py -> /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/_version.py to _version.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report/__init__.py to __init__.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/EGA.py to EGA.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/FTP.py to FTP.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/GS.py to GS.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/HTTP.py to HTTP.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/NCBI.py to NCBI.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/S3.py to S3.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/SFTP.py to SFTP.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/XRootD.py to XRootD.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/__init__.py to __init__.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/dropbox.py to dropbox.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/gfal.py to gfal.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/gridftp.py to gridftp.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/iRODS.py to iRODS.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/webdav.py to webdav.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__init__.py to __init__.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__main__.py to __main__.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/benchmark.py to benchmark.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/checkpoints.py to checkpoints.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/common.py to common.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/conda.py to conda.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/cwl.py to cwl.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/dag.py to dag.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/decorators.py to decorators.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/exceptions.py to exceptions.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/executors.py to executors.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/gui.py to gui.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/io.py to io.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/jobs.py to jobs.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/logging.py to logging.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/output_index.py to output_index.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/parser.py to parser.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/persistence.py to persistence.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/rules.py to rules.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/scheduler.py to scheduler.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/script.py to script.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/shell.py to shell.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/singularity.py to singularity.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/stats.py to stats.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/utils.py to utils.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/workflow.py to workflow.cpython-37.pyc byte-compiling /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/wrapper.py to wrapper.cpython-37.pyc running install_egg_info running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to /build/snakemake-5.4.0/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake-5.4.0.egg-info Skipping SOURCES.txt running install_scripts Installing snakemake script to /build/snakemake-5.4.0/debian/snakemake/usr/bin Installing snakemake-bash-completion script to /build/snakemake-5.4.0/debian/snakemake/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: ignoring unknown JavaScript code: debian/snakemake/usr/share/doc/snakemake/html/_static/js/modernizr.min.js dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package snakemake: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'snakemake' in '../snakemake_5.4.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../snakemake_5.4.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2206272 and its subdirectories I: Current time: Tue Dec 14 20:20:46 -12 2021 I: pbuilder-time-stamp: 1639556446 Wed Dec 15 08:20:47 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Dec 15 08:20:47 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Dec 15 08:24:36 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Dec 15 08:24:36 UTC 2021 I: snakemake_5.4.0-1_amd64.changes: Format: 1.8 Date: Fri, 04 Jan 2019 10:47:45 +0100 Source: snakemake Binary: snakemake Architecture: all Version: 5.4.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: snakemake - pythonic workflow management system Changes: snakemake (5.4.0-1) unstable; urgency=medium . * Team upload. * New upstream version. New Build-Dep: python3-git * Standards-Version: 4.3.0 Checksums-Sha1: eef2bfd4b6ed8f14889c2cecb7a62da24870f08e 719844 snakemake_5.4.0-1_all.deb c54e46afe75befea02fd9c2e8c45f74b140ee5dc 11753 snakemake_5.4.0-1_amd64.buildinfo Checksums-Sha256: a5a40790165bf098ff4d1d0c3e4403795fe1890a090d505ba75b5144682d4935 719844 snakemake_5.4.0-1_all.deb 29b34bcb691bd9b562583535c42c61d844d4340d8d63fe0ca087e6c0ba0341bb 11753 snakemake_5.4.0-1_amd64.buildinfo Files: 6ff5c06342e666151720536203f44c5d 719844 science optional snakemake_5.4.0-1_all.deb aac1a17be0c448d8c50403c43d797008 11753 science optional snakemake_5.4.0-1_amd64.buildinfo Wed Dec 15 08:24:37 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Md4JQEgGmJ/snakemake_5.4.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Md4JQEgGmJ/snakemake_5.4.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Md4JQEgGmJ/snakemake_5.4.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Md4JQEgGmJ/b1/snakemake_5.4.0-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.Md4JQEgGmJ/b2/snakemake_5.4.0-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.256s) 0.256s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.034s) 0.034s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Wed Dec 15 08:24:38 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Wed Dec 15 08:24:38 UTC 2021 I: snakemake from buster built successfully and reproducibly on amd64. Wed Dec 15 08:24:40 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Dec 15 08:24:40 UTC 2021 I: Submitting 16K b1/snakemake_5.4.0-1_amd64.buildinfo.asc Wed Dec 15 08:24:41 UTC 2021 I: Submitting 16K b2/snakemake_5.4.0-1_amd64.buildinfo.asc Wed Dec 15 08:24:41 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Dec 15 08:24:41 UTC 2021 I: Done submitting .buildinfo files. Wed Dec 15 08:24:41 UTC 2021 I: Removing signed snakemake_5.4.0-1_amd64.buildinfo.asc files: removed './b1/snakemake_5.4.0-1_amd64.buildinfo.asc' removed './b2/snakemake_5.4.0-1_amd64.buildinfo.asc'