Wed Dec 15 09:50:46 UTC 2021 I: starting to build segemehl/buster/amd64 on jenkins on '2021-12-15 09:50' Wed Dec 15 09:50:46 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_7/87793/console.log Wed Dec 15 09:50:46 UTC 2021 I: Downloading source for buster/segemehl=0.3.4-1 --2021-12-15 09:50:46-- http://deb.debian.org/debian/pool/main/s/segemehl/segemehl_0.3.4-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2000 (2.0K) Saving to: ‘segemehl_0.3.4-1.dsc’ 0K . 100% 106M=0s 2021-12-15 09:50:46 (106 MB/s) - ‘segemehl_0.3.4-1.dsc’ saved [2000/2000] Wed Dec 15 09:50:46 UTC 2021 I: segemehl_0.3.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: segemehl Binary: segemehl Architecture: any Version: 0.3.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://www.bioinf.uni-leipzig.de/Software/segemehl/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/segemehl Vcs-Git: https://salsa.debian.org/med-team/segemehl.git Build-Depends: debhelper (>= 12~), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev Package-List: segemehl deb science optional arch=any Checksums-Sha1: 676d5d11382bc053fb1d5ce90bfbac1aeb26a9d9 244092 segemehl_0.3.4.orig.tar.xz d54146ab2200a9276f993ed4af95ae36d10db41a 5536 segemehl_0.3.4-1.debian.tar.xz Checksums-Sha256: e498fb23e36d45a0d0035105812a747ca901af366d07dde431c25a49ee28abbc 244092 segemehl_0.3.4.orig.tar.xz 9d4c7b7e112ea0f4997f03e1690503789c522bb03512f265d3412f53f10ef06a 5536 segemehl_0.3.4-1.debian.tar.xz Files: 7cbc36ce09d0328089db4031663744a5 244092 segemehl_0.3.4.orig.tar.xz 9185df13b13b65722ac4f53263224bd9 5536 segemehl_0.3.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlw5EIARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEQNw//faSeYUIXPlW9K94HTwfx8dVxxi0976AM X0QBzM6Uhy/txdM4uwi+IEsFb3PYNekauKs1rfFtr2/KCv8fGZnZOJJzWu0nsvyo ijwNUi9aYiWZ1bTiMZXzg2v6ifDU8ZZ16eSCudWEuplCDYxcnA66wqVoy4AaZpMx iafXO21BL2bqebKa4lGe6A1xK0wCdtJl0/vHJq+fz0l5Dz2vujh8TAesg+f+51P1 CfLutT3efDL4ptcyYAw/Ypu94tldiwSdmv8XIIRI+hlbFlPxhfL9jWssebRSjBHd Nyp0bvHdWkwflYl07P+lHljupY7peEKJ1dV6qFhQH1sUehma42EbAyRhEN4eRKqq 0l6kIZTTJy3hGPHG4a5/Tv6NejVlT5kCq91zCCcrVolRvMojipqEJyarzRKrD5Zn bF61qEkclQ/vbxut5E5W4QqhGmDvdiPWoCzJT8t7KMw/rgBqCxXTCbsjUqpwgmEh qvJJLWxr2jNMkruegCnq7JUWUzn6aeWsn6YfCmUC6RzXl3GVs0aHxmTnZE3c7haU SYWFg7zbqPzid4XSzqelgEaIsBJJuQxxU8dxeKFlau8bmkfY0E2DBJ/7abNwNaMt Pe89QEii9cccGabFXGOauruQqa1ugraJ5ZRKKPV7uoKQyfNEsVeJu/IR1y6Az3OI RxqLG9Rrlj4= =U4Hu -----END PGP SIGNATURE----- Wed Dec 15 09:50:46 UTC 2021 I: Checking whether the package is not for us Wed Dec 15 09:50:46 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Dec 15 09:50:46 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Dec 15 09:51:21 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 14 21:50:48 -12 2021 I: pbuilder-time-stamp: 1639561848 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [segemehl_0.3.4-1.dsc] I: copying [./segemehl_0.3.4.orig.tar.xz] I: copying [./segemehl_0.3.4-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jan 11 09:54:08 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./segemehl_0.3.4-1.dsc dpkg-source: info: extracting segemehl in segemehl-0.3.4 dpkg-source: info: unpacking segemehl_0.3.4.orig.tar.xz dpkg-source: info: unpacking segemehl_0.3.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3443219/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='bdae84832ec74145926910b52e446c4a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3443219' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.lOsRIsKAPj/pbuilderrc_6Czi --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.lOsRIsKAPj/b1 --logfile b1/build.log segemehl_0.3.4-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 7 09:58 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/3443219/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), pkg-config, libhts-dev, libncurses-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libncurses-dev; however: Package libncurses-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhts-dev{a} libhts2{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 28.0 MB of archives. After unpacking 88.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1 [210 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libhts-dev amd64 1.9-12~deb10u1 [4347 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Fetched 28.0 MB in 0s (58.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up po-debconf (1.0.21) ... Setting up libhts-dev:amd64 (1.9-12~deb10u1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/segemehl-0.3.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../segemehl_0.3.4-1_source.changes dpkg-buildpackage: info: source package segemehl dpkg-buildpackage: info: source version 0.3.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean make -j15 clean make[1]: Entering directory '/build/segemehl-0.3.4' Cleaning... rm -f -r build segemehl haarz make[1]: Leaving directory '/build/segemehl-0.3.4' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/segemehl-0.3.4' dh_auto_build -- all make -j15 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/segemehl-0.3.4' Building... library for source build/matealign.o Building... library for source build/alignment.o Building... library for source build/nw.o Building... library for source build/mappingqual.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/matealign.o libs/matealign.c cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/alignment.o libs/alignment.c Building... library for source build/mapfrag.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/nw.o libs/nw.c Building... library for source build/filebuffer.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mappingqual.o libs/mappingqual.c Building... library for source build/multicharseq.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mapfrag.o libs/mapfrag.c cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/filebuffer.o libs/filebuffer.c Building... library for source build/mathematics.o Building... library for source build/manopt.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/multicharseq.o libs/multicharseq.c cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/mathematics.o libs/mathematics.c cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/manopt.o libs/manopt.c Building... library for source build/haarz.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/haarz.o libs/haarz.c Building... library for source build/intervaltree.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/intervaltree.o libs/intervaltree.c In file included from include/mathematics.h:117, from libs/alignment.c:38: libs/alignment.c: In function 'wrapAlignment': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/alignment.c:97:18: note: in expansion of macro 'FREEMEMORY' if(al->rmvseq) FREEMEMORY(NULL, al->v); ^~~~~~~~~~ libs/alignment.c:97:3: note: some parts of macro expansion are not guarded by this 'if' clause if(al->rmvseq) FREEMEMORY(NULL, al->v); ^~ In file included from include/mathematics.h:117, from libs/alignment.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/alignment.c:98:18: note: in expansion of macro 'FREEMEMORY' if(al->rmuseq) FREEMEMORY(NULL, al->u); ^~~~~~~~~~ libs/alignment.c:98:3: note: some parts of macro expansion are not guarded by this 'if' clause if(al->rmuseq) FREEMEMORY(NULL, al->u); ^~ Building... library for source build/bitvectoralg.o In file included from include/mathematics.h:117, from libs/mathematics.c:38: libs/mathematics.c: In function 'destructVector': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/mathematics.c:251:23: note: in expansion of macro 'FREEMEMORY' if (v->elements) FREEMEMORY(space, v->elements); ^~~~~~~~~~ libs/mathematics.c:251:6: note: some parts of macro expansion are not guarded by this 'if' clause if (v->elements) FREEMEMORY(space, v->elements); ^~ cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitvectoralg.o libs/bitvectoralg.c In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/locus.h:41, from include/mapfrag.h:39, from libs/matealign.c:32: libs/matealign.c: In function 'bl_matealign': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/matealign.c:313:15: note: in expansion of macro 'FREEMEMORY' if(npos[0]) FREEMEMORY(NULL, spos[0]); ^~~~~~~~~~ libs/matealign.c:313:3: note: some parts of macro expansion are not guarded by this 'if' clause if(npos[0]) FREEMEMORY(NULL, spos[0]); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/locus.h:41, from include/mapfrag.h:39, from libs/matealign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/matealign.c:314:15: note: in expansion of macro 'FREEMEMORY' if(npos[1]) FREEMEMORY(NULL, spos[1]); ^~~~~~~~~~ libs/matealign.c:314:3: note: some parts of macro expansion are not guarded by this 'if' clause if(npos[1]) FREEMEMORY(NULL, spos[1]); ^~ Building... library for source build/iupac.o In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: libs/multicharseq.c: In function 'destructMultiCharSeq': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/multicharseq.c:212:7: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, mseq->markpos); ^~~~~~~~~~ libs/multicharseq.c:211:2: note: some parts of macro expansion are not guarded by this 'if' clause if (mseq->markpos != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/multicharseq.c:214:7: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, mseq->map); ^~~~~~~~~~ libs/multicharseq.c:213:2: note: some parts of macro expansion are not guarded by this 'if' clause if (mseq->map != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from libs/multicharseq.c:38: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/multicharseq.c:216:7: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, mseq->ref); ^~~~~~~~~~ libs/multicharseq.c:215:5: note: some parts of macro expansion are not guarded by this 'if' clause if (mseq->ref != NULL) ^~ cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/iupac.o libs/iupac.c In file included from include/mathematics.h:117, from libs/intervaltree.c:27: libs/intervaltree.c: In function 'bl_intervaltreeDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/intervaltree.c:443:19: note: in expansion of macro 'FREEMEMORY' if(root->ncoll) FREEMEMORY(NULL, root->collisions); ^~~~~~~~~~ libs/intervaltree.c:443:3: note: some parts of macro expansion are not guarded by this 'if' clause if(root->ncoll) FREEMEMORY(NULL, root->collisions); ^~ Building... library for source build/splitalign.o Building... library for source build/fileBins.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/splitalign.o libs/splitalign.c cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/fileBins.o libs/fileBins.c Building... library for source build/sufarray.o Building... library for source build/gzip.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sufarray.o libs/sufarray.c In file included from libs/fileBins.c:51: libs/fileBins.c: In function 'bl_fileBinsSortLine': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/fileBins.c:901:18: note: in expansion of macro 'FREEMEMORY' if(fileSort) FREEMEMORY(space, line); ^~~~~~~~~~ libs/fileBins.c:901:5: note: some parts of macro expansion are not guarded by this 'if' clause if(fileSort) FREEMEMORY(space, line); ^~ cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/gzip.o libs/gzip.c In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: libs/splitalign.c: In function 'bl_fixSplitAlignHoffmann': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1323:25: note: in expansion of macro 'FREEMEMORY' if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1323:7: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1324:25: note: in expansion of macro 'FREEMEMORY' if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1324:7: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1325:26: note: in expansion of macro 'FREEMEMORY' if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1325:7: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1326:26: note: in expansion of macro 'FREEMEMORY' if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1326:7: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: libs/splitalign.c: In function 'bl_fixSplitAlignBrendel': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1565:27: note: in expansion of macro 'FREEMEMORY' if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1565:9: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[0]) FREEMEMORY(space, leftseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1566:27: note: in expansion of macro 'FREEMEMORY' if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1566:9: note: some parts of macro expansion are not guarded by this 'if' clause if(leftseedno[1]) FREEMEMORY(space, leftseeds[1]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1567:28: note: in expansion of macro 'FREEMEMORY' if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~~~~~~~~~ libs/splitalign.c:1567:9: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[0]) FREEMEMORY(space, rightseeds[0]); ^~ In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/bitvectoralg.h:32, from include/splitalign.h:29, from libs/splitalign.c:32: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/splitalign.c:1568:28: note: in expansion of macro 'FREEMEMORY' if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~~~~~~~~~ libs/splitalign.c:1568:9: note: some parts of macro expansion are not guarded by this 'if' clause if(rightseedno[1]) FREEMEMORY(space, rightseeds[1]); ^~ Building... library for source build/info.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/info.o libs/info.c libs/info.c: In function 'timestr_r': libs/info.c:64:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: 'sprintf' output between 16 and 67 bytes into a destination of size 26 sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_sec, 1900 + timeptr->tm_year); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: libs/sufarray.c: In function 'destructSufArr': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:613:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->lcpctab); ^~~~~~~~~~ libs/sufarray.c:612:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->lcpctab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:615:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->inv_suftab); ^~~~~~~~~~ libs/sufarray.c:614:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->inv_suftab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:619:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->idvtab); ^~~~~~~~~~ libs/sufarray.c:618:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->idvtab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:624:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->suflink); ^~~~~~~~~~ libs/sufarray.c:620:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->suflink != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:627:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->chldtab); ^~~~~~~~~~ libs/sufarray.c:626:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->chldtab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:629:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->mdfive); ^~~~~~~~~~ libs/sufarray.c:628:3: note: some parts of macro expansion are not guarded by this 'if' clause if (arr->mdfive) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:631:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->llvtab); ^~~~~~~~~~ libs/sufarray.c:630:3: note: some parts of macro expansion are not guarded by this 'if' clause if(arr->llvtab != NULL) ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/sufarray.h:45, from libs/sufarray.c:39: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/sufarray.c:636:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, arr->id); ^~~~~~~~~~ libs/sufarray.c:632:3: note: some parts of macro expansion are not guarded by this 'if' clause if(arr->id != NULL) ^~ libs/info.c: In function 'infomsg': libs/info.c:64:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: 'sprintf' output between 16 and 67 bytes into a destination of size 26 sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_sec, 1900 + timeptr->tm_year); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c: In function 'nfolevel': libs/info.c:64:50: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~ libs/info.c:64:21: note: directive argument in the range [-2147481748, 2147483647] sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libs/info.c:64:5: note: 'sprintf' output between 16 and 67 bytes into a destination of size 26 sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wday_name[timeptr->tm_wday], mon_name[timeptr->tm_mon], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_mday, timeptr->tm_hour, timeptr->tm_min, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ timeptr->tm_sec, 1900 + timeptr->tm_year); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Building... library for source build/brendel.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/brendel.o libs/brendel.c Building... library for source build/manout.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/manout.o libs/manout.c Building... library for source build/samio.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/samio.o libs/samio.c Building... library for source build/stringutils.o Building... library for source build/charsequence.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/stringutils.o libs/stringutils.c cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/charsequence.o libs/charsequence.c Building... library for source build/match.o In file included from include/stringutils.h:27, from libs/stringutils.c:39: libs/stringutils.c: In function 'destructStringset': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/stringutils.c:274:9: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, s->strings[i].str); ^~~~~~~~~~ libs/stringutils.c:273:7: note: some parts of macro expansion are not guarded by this 'if' clause if(s->strings[i].str != NULL) ^~ cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/match.o libs/match.c In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: libs/samio.c: In function 'bl_samDestructTag': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:102:15: note: in expansion of macro 'FREEMEMORY' if(kv->tag) FREEMEMORY(NULL, kv->tag); ^~~~~~~~~~ libs/samio.c:102:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->tag) FREEMEMORY(NULL, kv->tag); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:103:15: note: in expansion of macro 'FREEMEMORY' if(kv->val) FREEMEMORY(NULL, kv->val); ^~~~~~~~~~ libs/samio.c:103:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->val) FREEMEMORY(NULL, kv->val); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:104:16: note: in expansion of macro 'FREEMEMORY' if(kv->type) FREEMEMORY(NULL, kv->type); ^~~~~~~~~~ libs/samio.c:104:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->type) FREEMEMORY(NULL, kv->type); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:105:15: note: in expansion of macro 'FREEMEMORY' if(kv->key) FREEMEMORY(NULL, kv->key); ^~~~~~~~~~ libs/samio.c:105:3: note: some parts of macro expansion are not guarded by this 'if' clause if(kv->key) FREEMEMORY(NULL, kv->key); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: libs/samio.c: In function 'bl_samDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:112:21: note: in expansion of macro 'FREEMEMORY' if(samrec->qname) FREEMEMORY(NULL, samrec->qname); ^~~~~~~~~~ libs/samio.c:112:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->qname) FREEMEMORY(NULL, samrec->qname); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:113:21: note: in expansion of macro 'FREEMEMORY' if(samrec->rname) FREEMEMORY(NULL, samrec->rname); ^~~~~~~~~~ libs/samio.c:113:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->rname) FREEMEMORY(NULL, samrec->rname); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:114:21: note: in expansion of macro 'FREEMEMORY' if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); ^~~~~~~~~~ libs/samio.c:114:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->cigar) FREEMEMORY(NULL, samrec->cigar); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:115:21: note: in expansion of macro 'FREEMEMORY' if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); ^~~~~~~~~~ libs/samio.c:115:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->rnext) FREEMEMORY(NULL, samrec->rnext); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:116:21: note: in expansion of macro 'FREEMEMORY' if(samrec->seq) FREEMEMORY(NULL, samrec->seq); ^~~~~~~~~~ libs/samio.c:116:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->seq) FREEMEMORY(NULL, samrec->seq); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:117:21: note: in expansion of macro 'FREEMEMORY' if(samrec->qual) FREEMEMORY(NULL, samrec->qual); ^~~~~~~~~~ libs/samio.c:117:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->qual) FREEMEMORY(NULL, samrec->qual); ^~ In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from libs/samio.c:33: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/samio.c:121:20: note: in expansion of macro 'FREEMEMORY' if(samrec->tags) FREEMEMORY(NULL, samrec->tags); ^~~~~~~~~~ libs/samio.c:121:3: note: some parts of macro expansion are not guarded by this 'if' clause if(samrec->tags) FREEMEMORY(NULL, samrec->tags); ^~ Building... library for source build/sort.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sort.o libs/sort.c In file included from libs/charsequence.c:26: libs/charsequence.c: In function 'destructSequence': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:467:4: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->sequence); ^~~~~~~~~~ libs/charsequence.c:466:3: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->sequence != NULL) ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:470:5: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->alphabetname); ^~~~~~~~~~ libs/charsequence.c:469:2: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->alphabetname != NULL) ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:472:2: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->url); ^~~~~~~~~~ libs/charsequence.c:471:5: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->url != NULL) ^~ In file included from libs/charsequence.c:26: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/charsequence.c:474:2: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, sequence->info); ^~~~~~~~~~ libs/charsequence.c:473:5: note: some parts of macro expansion are not guarded by this 'if' clause if (sequence->info != NULL) ^~ Building... library for source build/radixsort.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/radixsort.o libs/radixsort.c Building... library for source build/pigeon.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/pigeon.o libs/pigeon.c Building... library for source build/junctions.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/junctions.o libs/junctions.c Building... library for source build/memory.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/memory.o libs/memory.c Building... library for source build/segemehl.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/segemehl.o libs/segemehl.c Building... library for source build/bedfiles.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bedfiles.o libs/bedfiles.c In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/segemehl.h:44, from libs/pigeon.c:35: libs/pigeon.c: In function 'pigeon': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/pigeon.c:352:13: note: in expansion of macro 'FREEMEMORY' if(check) FREEMEMORY(space, check); ^~~~~~~~~~ libs/pigeon.c:352:3: note: some parts of macro expansion are not guarded by this 'if' clause if(check) FREEMEMORY(space, check); ^~ Building... library for source build/container.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/container.o libs/container.c Building... library for source build/portable_endian.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/portable_endian.o libs/portable_endian.c Building... library for source build/gzidx.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/gzidx.o libs/gzidx.c Building... library for source build/bgzip.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bgzip.o libs/bgzip.c Building... library for source build/karlin.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/karlin.o libs/karlin.c Building... library for source build/vtprogressbar.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vtprogressbar.o libs/vtprogressbar.c Building... library for source build/kdchain.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/kdchain.o libs/kdchain.c Building... library for source build/fileio.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/fileio.o libs/fileio.c Building... library for source build/sw.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/sw.o libs/sw.c Building... library for source build/samheader.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/samheader.o libs/samheader.c Building... library for source build/bitArray.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitArray.o libs/bitArray.c Building... library for source build/segemehl_helper.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/segemehl_helper.o libs/segemehl_helper.c Building... library for source build/aluruSort.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/aluruSort.o libs/aluruSort.c Building... library for source build/vqueue.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vqueue.o libs/vqueue.c Building... library for source build/bamio.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bamio.o libs/bamio.c Building... library for source build/stack.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/stack.o libs/stack.c Building... library for source build/kdseed.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/kdseed.o libs/kdseed.c In file included from include/stringutils.h:27, from include/charsequence.h:43, from include/multicharseq.h:43, from include/samio.h:23, from include/bamio.h:21, from libs/bamio.c:32: libs/bamio.c: In function 'bl_bamCrossSectionDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/bamio.c:468:20: note: in expansion of macro 'FREEMEMORY' if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); ^~~~~~~~~~ libs/bamio.c:468:5: note: some parts of macro expansion are not guarded by this 'if' clause if(cs->x[k].n) FREEMEMORY(NULL, cs->x[k].d); ^~ Building... library for source build/merge.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/merge.o libs/merge.c Building... library for source build/debug.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/debug.o libs/debug.c Building... library for source build/seqclip.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/seqclip.o libs/seqclip.c Building... library for source build/locus.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/locus.o libs/locus.c Building... library for source build/bitVector.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/bitVector.o libs/bitVector.c In file included from include/stringutils.h:27, from libs/merge.c:34: libs/merge.c: In function 'se_mergeWorker': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/merge.c:1096:20: note: in expansion of macro 'FREEMEMORY' if(curkey) FREEMEMORY(NULL, curkey); ^~~~~~~~~~ libs/merge.c:1096:9: note: some parts of macro expansion are not guarded by this 'if' clause if(curkey) FREEMEMORY(NULL, curkey); ^~ In file included from include/stringutils.h:27, from libs/merge.c:34: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/merge.c:1216:26: note: in expansion of macro 'FREEMEMORY' if(!reads && curkey) FREEMEMORY(NULL, curkey); ^~~~~~~~~~ libs/merge.c:1216:5: note: some parts of macro expansion are not guarded by this 'if' clause if(!reads && curkey) FREEMEMORY(NULL, curkey); ^~ Building... library for source build/biofiles.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/biofiles.o libs/biofiles.c In file included from include/stringutils.h:27, from include/biofiles.h:43, from include/alignment.h:38, from include/sw.h:38, from libs/seqclip.c:44: libs/seqclip.c: In function 'bl_Find3PrimeGreedy': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/seqclip.c:529:9: note: in expansion of macro 'FREEMEMORY' FREEMEMORY(space, adapter); ^~~~~~~~~~ libs/seqclip.c:528:7: note: some parts of macro expansion are not guarded by this 'if' clause if(adapter) ^~ Building... library for source build/annotation.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/annotation.o libs/annotation.c Building... library for source build/queryalign.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/queryalign.o libs/queryalign.c In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function 'bl_annotationitemDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:149:23: note: in expansion of macro 'FREEMEMORY' if(item->chromname) FREEMEMORY(space, item->chromname); ^~~~~~~~~~ libs/annotation.c:149:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->chromname) FREEMEMORY(space, item->chromname); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:150:18: note: in expansion of macro 'FREEMEMORY' if(item->name) FREEMEMORY(space, item->name); ^~~~~~~~~~ libs/annotation.c:150:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->name) FREEMEMORY(space, item->name); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:151:21: note: in expansion of macro 'FREEMEMORY' if(item->itemRgb) FREEMEMORY(space, item->itemRgb); ^~~~~~~~~~ libs/annotation.c:151:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->itemRgb) FREEMEMORY(space, item->itemRgb); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:152:24: note: in expansion of macro 'FREEMEMORY' if(item->blockSizes) FREEMEMORY(space, item->blockSizes); ^~~~~~~~~~ libs/annotation.c:152:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockSizes) FREEMEMORY(space, item->blockSizes); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:153:25: note: in expansion of macro 'FREEMEMORY' if(item->blockStarts) FREEMEMORY(space, item->blockStarts); ^~~~~~~~~~ libs/annotation.c:153:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockStarts) FREEMEMORY(space, item->blockStarts); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:154:26: note: in expansion of macro 'FREEMEMORY' if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); ^~~~~~~~~~ libs/annotation.c:154:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockRefseqs) FREEMEMORY(space, item->blockRefseqs); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:155:26: note: in expansion of macro 'FREEMEMORY' if(item->blockStrands) FREEMEMORY(space, item->blockStrands); ^~~~~~~~~~ libs/annotation.c:155:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->blockStrands) FREEMEMORY(space, item->blockStrands); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:156:20: note: in expansion of macro 'FREEMEMORY' if(item->source) FREEMEMORY(space, item->source); ^~~~~~~~~~ libs/annotation.c:156:3: note: some parts of macro expansion are not guarded by this 'if' clause if(item->source) FREEMEMORY(space, item->source); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function 'bl_annotationtrackDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:409:24: note: in expansion of macro 'FREEMEMORY' if(track->trackname) FREEMEMORY(space, track->trackname); ^~~~~~~~~~ libs/annotation.c:409:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->trackname) FREEMEMORY(space, track->trackname); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:410:23: note: in expansion of macro 'FREEMEMORY' if(track->filename) FREEMEMORY(space, track->filename); ^~~~~~~~~~ libs/annotation.c:410:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->filename) FREEMEMORY(space, track->filename); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:411:26: note: in expansion of macro 'FREEMEMORY' if(track->description) FREEMEMORY(space, track->description); ^~~~~~~~~~ libs/annotation.c:411:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->description) FREEMEMORY(space, track->description); ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:418:20: note: in expansion of macro 'FREEMEMORY' if(track->items) FREEMEMORY(space, track->items) ; ^~~~~~~~~~ libs/annotation.c:418:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->items) FREEMEMORY(space, track->items) ; ^~ In file included from include/stringutils.h:27, from libs/annotation.c:29: libs/annotation.c: In function 'bl_annotationmultitrackDestruct': include/memory.h:32:27: warning: macro expands to multiple statements [-Wmultistatement-macros] #define FREEMEMORY(X,PTR) free(PTR); PTR=NULL ^~~~ libs/annotation.c:455:20: note: in expansion of macro 'FREEMEMORY' if(track->items) FREEMEMORY(space, track->items) ; ^~~~~~~~~~ libs/annotation.c:455:3: note: some parts of macro expansion are not guarded by this 'if' clause if(track->items) FREEMEMORY(space, track->items) ; ^~ Building... library for source build/vstack.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/vstack.o libs/vstack.c Building... library for source build/md5.o cc -g -O2 -ffile-prefix-map=/build/segemehl-0.3.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools `pkg-config --cflags htslib` -I include -c -o build/md5.o libs/md5.c Linking segemehl cc build/matealign.o build/alignment.o build/nw.o build/mappingqual.o build/mapfrag.o build/filebuffer.o build/multicharseq.o build/mathematics.o build/manopt.o build/intervaltree.o build/bitvectoralg.o build/iupac.o build/splitalign.o build/fileBins.o build/sufarray.o build/gzip.o build/info.o build/brendel.o build/manout.o build/samio.o build/stringutils.o build/charsequence.o build/match.o build/sort.o build/radixsort.o build/pigeon.o build/junctions.o build/memory.o build/bedfiles.o build/container.o build/portable_endian.o build/gzidx.o build/bgzip.o build/karlin.o build/vtprogressbar.o build/kdchain.o build/fileio.o build/sw.o build/samheader.o build/bitArray.o build/segemehl_helper.o build/aluruSort.o build/vqueue.o build/bamio.o build/stack.o build/kdseed.o build/merge.o build/debug.o build/seqclip.o build/locus.o build/bitVector.o build/biofiles.o build/annotation.o build/queryalign.o build/vstack.o build/md5.o build/segemehl.o -o ./segemehl.x -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/ `pkg-config --libs htslib` -Wl,-z,relro -Wl,-z,now Linking haarz cc build/matealign.o build/alignment.o build/nw.o build/mappingqual.o build/mapfrag.o build/filebuffer.o build/multicharseq.o build/mathematics.o build/manopt.o build/intervaltree.o build/bitvectoralg.o build/iupac.o build/splitalign.o build/fileBins.o build/sufarray.o build/gzip.o build/info.o build/brendel.o build/manout.o build/samio.o build/stringutils.o build/charsequence.o build/match.o build/sort.o build/radixsort.o build/pigeon.o build/junctions.o build/memory.o build/bedfiles.o build/container.o build/portable_endian.o build/gzidx.o build/bgzip.o build/karlin.o build/vtprogressbar.o build/kdchain.o build/fileio.o build/sw.o build/samheader.o build/bitArray.o build/segemehl_helper.o build/aluruSort.o build/vqueue.o build/bamio.o build/stack.o build/kdseed.o build/merge.o build/debug.o build/seqclip.o build/locus.o build/bitVector.o build/biofiles.o build/annotation.o build/queryalign.o build/vstack.o build/md5.o build/haarz.o -o ./haarz.x -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/ `pkg-config --libs htslib` -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/segemehl-0.3.4' make[1]: Leaving directory '/build/segemehl-0.3.4' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/segemehl-0.3.4' mv segemehl.x segemehl mv haarz.x haarz find . -name "*.x" dh_install make[1]: Leaving directory '/build/segemehl-0.3.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/segemehl/usr/bin/segemehl debian/segemehl/usr/bin/haarz were not linked against libtinfo.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/segemehl/usr/bin/segemehl debian/segemehl/usr/bin/haarz were not linked against libncurses.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/segemehl/usr/bin/segemehl debian/segemehl/usr/bin/haarz were not linked against libform.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/segemehl/usr/bin/segemehl debian/segemehl/usr/bin/haarz were not linked against libmenu.so.6 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'segemehl' in '../segemehl_0.3.4-1_amd64.deb'. dpkg-deb: building package 'segemehl-dbgsym' in '../segemehl-dbgsym_0.3.4-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../segemehl_0.3.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3443219 and its subdirectories I: Current time: Tue Dec 14 21:51:21 -12 2021 I: pbuilder-time-stamp: 1639561881 Wed Dec 15 09:51:21 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Dec 15 09:51:21 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed Dec 15 09:52:08 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed Dec 15 09:52:08 UTC 2021 I: segemehl_0.3.4-1_amd64.changes: Format: 1.8 Date: Fri, 11 Jan 2019 22:52:52 +0100 Source: segemehl Binary: segemehl segemehl-dbgsym Architecture: amd64 Version: 0.3.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: segemehl - short read mapping with gaps Changes: segemehl (0.3.4-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 Checksums-Sha1: 85c34532bc58fe1240f3d5d458c7861d66070421 1706736 segemehl-dbgsym_0.3.4-1_amd64.deb d52ff0709437d79d5f7f84914b92b68c8c8fbbcb 5651 segemehl_0.3.4-1_amd64.buildinfo c9694deb5c0111401f650322a30f93d06a801e8d 323936 segemehl_0.3.4-1_amd64.deb Checksums-Sha256: 09fbff7952db9ad52f9987e1f8b0a7f1020b1369dbc684e4b07d4fb8d24495b8 1706736 segemehl-dbgsym_0.3.4-1_amd64.deb 0dd7b1e6e81715746accb7c4c1a84044ea7a87e5cd1c9d7452feaecd186ca03d 5651 segemehl_0.3.4-1_amd64.buildinfo 0e036e5f5a8ace967ec1442f4da9e8b30ec354c3e54e16915ae0a045eee0ec9d 323936 segemehl_0.3.4-1_amd64.deb Files: 7aa09b1e4077889c244ede8a1d5b981d 1706736 debug optional segemehl-dbgsym_0.3.4-1_amd64.deb bcb082f9ffb968e9807065d62a13744c 5651 science optional segemehl_0.3.4-1_amd64.buildinfo 7d939017f31af5d4ccfe1ed454230c59 323936 science optional segemehl_0.3.4-1_amd64.deb Wed Dec 15 09:52:09 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.lOsRIsKAPj/segemehl_0.3.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.lOsRIsKAPj/segemehl_0.3.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.lOsRIsKAPj/segemehl_0.3.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.lOsRIsKAPj/b1/segemehl_0.3.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.lOsRIsKAPj/b2/segemehl_0.3.4-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.280s) 0.280s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.043s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed Dec 15 09:52:10 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Wed Dec 15 09:52:10 UTC 2021 I: segemehl from buster built successfully and reproducibly on amd64. Wed Dec 15 09:52:12 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Dec 15 09:52:12 UTC 2021 I: Submitting 8.0K b1/segemehl_0.3.4-1_amd64.buildinfo.asc Wed Dec 15 09:52:13 UTC 2021 I: Submitting 8.0K b2/segemehl_0.3.4-1_amd64.buildinfo.asc Wed Dec 15 09:52:13 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Dec 15 09:52:13 UTC 2021 I: Done submitting .buildinfo files. Wed Dec 15 09:52:13 UTC 2021 I: Removing signed segemehl_0.3.4-1_amd64.buildinfo.asc files: removed './b1/segemehl_0.3.4-1_amd64.buildinfo.asc' removed './b2/segemehl_0.3.4-1_amd64.buildinfo.asc'