Sat Jul 17 11:18:27 UTC 2021 I: starting to build relion/buster/amd64 on jenkins on '2021-07-17 11:18' Sat Jul 17 11:18:27 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/68042/console.log Sat Jul 17 11:18:27 UTC 2021 I: Downloading source for buster/relion=1.4+dfsg-4 --2021-07-17 11:18:27-- http://deb.debian.org/debian/pool/main/r/relion/relion_1.4+dfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3045 (3.0K) Saving to: ‘relion_1.4+dfsg-4.dsc’ 0K .. 100% 155M=0s 2021-07-17 11:18:27 (155 MB/s) - ‘relion_1.4+dfsg-4.dsc’ saved [3045/3045] Sat Jul 17 11:18:27 UTC 2021 I: relion_1.4+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: relion Binary: relion-bin, relion-bin+mpi, relion-bin+gui, relion-bin+mpi+gui, librelion-dev-common, librelion-dev, librelion+mpi-dev, librelion+gui-dev, librelion+mpi+gui-dev, librelion-1.4-1, librelion+mpi-1.4-1, librelion+gui-1.4-1, librelion+mpi+gui-1.4-1 Architecture: amd64 i386 all Version: 1.4+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Roland Fehrenbacher , Navid Fehrenbacher , Goswin von Brederlow , Andreas Tille Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/relion Vcs-Git: https://salsa.debian.org/med-team/relion.git Build-Depends: debhelper (>= 11~), dh-exec, libfltk1.3-dev, libfftw3-dev, libopenmpi-dev Package-List: librelion+gui-1.4-1 deb libs optional arch=amd64,i386 librelion+gui-dev deb libdevel optional arch=amd64,i386 librelion+mpi+gui-1.4-1 deb libs optional arch=i386,amd64 librelion+mpi+gui-dev deb libdevel optional arch=amd64,i386 librelion+mpi-1.4-1 deb libs optional arch=amd64,i386 librelion+mpi-dev deb libdevel optional arch=amd64,i386 librelion-1.4-1 deb libs optional arch=amd64,i386 librelion-dev deb libdevel optional arch=amd64,i386 librelion-dev-common deb libdevel optional arch=all relion-bin deb science optional arch=amd64,i386 relion-bin+gui deb science optional arch=amd64,i386 relion-bin+mpi deb science optional arch=amd64,i386 relion-bin+mpi+gui deb science optional arch=amd64,i386 Checksums-Sha1: 9196d1f0ad262df05e955f9bd20a36be5d21c1b0 548208 relion_1.4+dfsg.orig.tar.xz 0401cfbd908ca0e20ac329b54dc89064f8769ebe 8344 relion_1.4+dfsg-4.debian.tar.xz Checksums-Sha256: 3866f1e69f825ab946c9782f484ff4a64f63fbd2152fc1f63a62373d61c37c1e 548208 relion_1.4+dfsg.orig.tar.xz decc35ec3a44ab14455e97c3bdc64a8dfa8131f9e6bb431eec126e26e488842e 8344 relion_1.4+dfsg-4.debian.tar.xz Files: e570e18a1484a37c6cdcba64583aae90 548208 relion_1.4+dfsg.orig.tar.xz 6dbbdab7bdca852823bca0b27b403eda 8344 relion_1.4+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlsiX80RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGUBRAAgBpEWxU2WP9/ct1GvxumN6cPABMcy+no 6C0FaDvqlD5zB5hJ4BfcbajDZ2xzDQaonB9bzh8kn2MaMYsWfzeIM7IIxMIKjTVs rZZVQVdOTjii49Bgmp4uu6zM2qgViaZxfizaOE98OVCMqpoWqQ4RAUQAnK35i2O7 R4njShRkmCF+biLtmiz8VmaUqflws4G5HQiLlGKwO4rtPECcl/GL5b11AhFUmqub xuQzrf1UljiUNYnaQzcofVfw1oKgM31NRgcFkUVttPwMnh+GtCuwyzm/FEVE/Ogr y02wJJBQBDEyoo04lbXCrf9YfnSyyIKa5zTBVJV4OH45xY+xUEdAik/0vSGwUrtC xRHr8RfY8FvEZzG0nVZb2FmujPJoq0fS6C4XG6/a5IVs9VcdydX6uS7al8xRCz2u JdaqDC5eP2CWcF6R2EhYo9i1v58FGevhIAGK24EvWbo2t+kWg6tO5YQ9mmYFZhjp 71c8Za5mNBAQialXoOfimasIANLIO/WqHvJ1S5ud+fsgldIg6zEb4kRXQ34NGSpd QvtigmDoWZQXVJntPOud9O82pUcN3nDRh1/VSe7yhwtQ9FBWmFpUYFX7xdRePQDQ FxptxQkDhxzZuzZUf+azEFncZQyHBTCe9EO2ss5QYXXhrDkiJUQHhbSK7KLskoDo RQZt6l9OJlM= =Xtkv -----END PGP SIGNATURE----- Sat Jul 17 11:18:27 UTC 2021 I: Checking whether the package is not for us Sat Jul 17 11:18:27 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sat Jul 17 11:18:27 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sat Jul 17 11:31:57 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 16 23:18:29 -12 2021 I: pbuilder-time-stamp: 1626520709 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [relion_1.4+dfsg-4.dsc] I: copying [./relion_1.4+dfsg.orig.tar.xz] I: copying [./relion_1.4+dfsg-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jun 14 00:30:05 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./relion_1.4+dfsg-4.dsc dpkg-source: info: extracting relion in relion-1.4+dfsg dpkg-source: info: unpacking relion_1.4+dfsg.orig.tar.xz dpkg-source: info: unpacking relion_1.4+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Fix-fltk-config-path-in-configure.patch dpkg-source: info: applying 0002-Add-ml_optimiser_mpi.cpp-length_fn_ctf-patch.patch dpkg-source: info: applying 0003-Add-enable-gui-flag-to-configure.patch dpkg-source: info: applying 0004-Fix-fltk-header-includes.patch dpkg-source: info: applying 0005-gcc-6.patch dpkg-source: info: applying 0006-correct-copy-overflow.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/41603/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='17f2d80d13b84f89a7fbb9bdce2a2af1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='41603' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/pbuilderrc_zM9P --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/b1 --logfile b1/build.log relion_1.4+dfsg-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 20:24 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/41603/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-exec, libfltk1.3-dev, libfftw3-dev, libopenmpi-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on libfltk1.3-dev; however: Package libfltk1.3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcairo2{a} libcroco3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfltk-cairo1.3{a} libfltk-forms1.3{a} libfltk-gl1.3{a} libfltk-images1.3{a} libfltk1.3{a} libfltk1.3-dev{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libllvm7{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a} libpng16-16{a} libpsm-infinipath1{a} libpsm2-2{a} libpthread-stubs0-dev{a} librdmacm1{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb1{a} libxcb1-dev{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxinerama1{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxxf86vm1{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} ucf{a} x11proto-core-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl fluid krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libgl1-mesa-dev libglib2.0-data libglu1-mesa-dev libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 67.0 MB of archives. After unpacking 391 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 dh-exec amd64 0.23.1 [26.3 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libfftw3-long3 amd64 3.3.8-2 [319 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libfftw3-quad3 amd64 3.3.8-2 [558 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libfftw3-bin amd64 3.3.8-2 [50.7 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libfftw3-dev amd64 3.3.8-2 [2106 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libxcursor1 amd64 1:1.1.15-2 [36.6 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libfltk1.3 amd64 1.3.4-9 [557 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libfltk-cairo1.3 amd64 1.3.4-9 [41.4 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libfltk-forms1.3 amd64 1.3.4-9 [47.8 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 103 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 105 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libglu1-mesa amd64 9.0.0-2.1+b3 [169 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libfltk-gl1.3 amd64 1.3.4-9 [73.1 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libfltk-images1.3 amd64 1.3.4-9 [61.1 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get: 118 http://deb.debian.org/debian buster/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 122 http://deb.debian.org/debian buster/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libx11-dev amd64 2:1.6.7-1+deb10u2 [825 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libfltk1.3-dev amd64 1.3.4-9 [3205 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Fetched 67.0 MB in 2s (41.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../008-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../011-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../012-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../013-libkrb5support0_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../014-libk5crypto3_1.17-3+deb10u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../015-libssl1.1_1.1.1d-0+deb10u6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../016-libkrb5-3_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../017-libgssapi-krb5-2_1.17-3+deb10u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../018-openssh-client_1%3a7.9p1-10+deb10u2_amd64.deb ... Unpacking openssh-client (1:7.9p1-10+deb10u2) ... Selecting previously unselected package ucf. Preparing to unpack .../019-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../020-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../026-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../027-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../028-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../029-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../030-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. 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Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libfftw3-dev:amd64 (3.3.8-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libibverbs1:amd64 (22.1-1) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libxcb1-dev:amd64 (1.13.1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libx11-dev:amd64 (2:1.6.7-1+deb10u2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up po-debconf (1.0.21) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up libfltk1.3:amd64 (1.3.4-9) ... Setting up libfltk-cairo1.3:amd64 (1.3.4-9) ... Setting up libfltk-images1.3:amd64 (1.3.4-9) ... Setting up libfltk-forms1.3:amd64 (1.3.4-9) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1+b3) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libfltk-gl1.3:amd64 (1.3.4-9) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libfltk1.3-dev (1.3.4-9) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-exec (0.23.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/relion-1.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package relion dpkg-buildpackage: info: source version 1.4+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from relion-1.4+dfsg/debian/source/options: --compression=xz fakeroot debian/rules clean Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh clean dh_clean debian/rules build Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:16: installing './compile' configure.ac:4: installing './missing' /usr/share/automake-1.16/am/ltlibrary.am: warning: 'librelion-@RELION_API_VERSION@.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.16/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' Makefile.am:44: while processing Libtool library 'librelion-@RELION_API_VERSION@.la' Makefile.am: installing './depcomp' debian/rules override_dh_auto_build make[1]: Entering directory '/build/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # We need to build 4 different versions for the 4 different binary # packages. This is necessary because unfortunately the binaries work # only with the exact same librelion they were built with. # First no MPI, no GUI (for relion-bin) ... dh_auto_configure -- --libdir=\${prefix}/lib/x86_64-linux-gnu --disable-gui ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/x86_64-linux-gnu --disable-gui configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/simple/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time 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find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/reconstruct src/apps/reconstruct.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess src/apps/preprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/postprocess src/apps/postprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick src/apps/autopick.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/project src/apps/project.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine src/apps/refine.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort src/apps/particle_sort.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/star_compare src/apps/star_compare.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tiltpair_plot src/apps/tiltpair_plot.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind src/apps/run_ctffind.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/stack_create src/apps/stack_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/image_handler src/apps/image_handler.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mask_create src/apps/mask_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/build/relion-1.4+dfsg/debian/tmp/simple/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/build/relion-1.4+dfsg/debian/tmp/simple/usr/include/relion-1.4/.' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/build/relion-1.4+dfsg/debian/tmp/simple/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make clean make[2]: Entering directory '/build/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/build/relion-1.4+dfsg' # ... then add MPI (for relion-bin+mpi) ... MPICXX=mpicxx.openmpi dh_auto_configure -- --libdir=\${prefix}/lib/x86_64-linux-gnu --enable-mpi --disable-gui ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/x86_64-linux-gnu --enable-mpi --disable-gui configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for mpic++... mpicxx.openmpi checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/mpi/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/ctffind_runner.cpp: In member function 'void CtffindRunner::executeCtffind(FileName)': src/ctffind_runner.cpp:237:9: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system ( fn_cmnd.c_str() ); ~~~~~~~^~~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 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-Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o src/mpi.cpp: In constructor 'MpiNode::MpiNode(int&, char**)': src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); ^ In file included from ./src/mpi.h:47, from src/mpi.cpp:46: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); ^ In file included from ./src/mpi.h:47, from src/mpi.cpp:46: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 src/preprocessing_mpi.cpp: In member function 'void PreprocessingMpi::runExtractParticles()': src/preprocessing_mpi.cpp:58:9: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("mkdir -p Particles"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/preprocessing_mpi.cpp:68:10: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(("mkdir -p " + fn_dir).c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. 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-fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 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-fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong 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src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/mpi.o src/autopicker_mpi.o src/ctffind_runner_mpi.o src/particle_polisher_mpi.o src/particle_sorter_mpi.o src/preprocessing_mpi.o src/ml_optimiser_mpi.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/project src/apps/project.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/reconstruct src/apps/reconstruct.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine src/apps/refine.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess src/apps/preprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/postprocess src/apps/postprocess.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick src/apps/autopick.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tiltpair_plot src/apps/tiltpair_plot.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish src/apps/particle_polish.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/preprocess_mpi src/apps/preprocess_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort src/apps/particle_sort.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/star_compare src/apps/star_compare.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/find_tiltpairs src/apps/find_tiltpairs.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/autopick_mpi src/apps/autopick_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind src/apps/run_ctffind.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/refine_mpi src/apps/refine_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mask_create src/apps/mask_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/stack_create src/apps/stack_create.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/image_handler src/apps/image_handler.o ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c refine_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_refine_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_preprocess_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c autopick_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_autopick_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_polish_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_particle_sort_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind_mpi /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_run_ctffind_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h src/mpi.h src/autopicker_mpi.h src/ctffind_runner_mpi.h src/particle_polisher_mpi.h src/particle_sorter_mpi.h src/preprocessing_mpi.h src/ml_optimiser_mpi.h '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/include/relion-1.4/.' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/build/relion-1.4+dfsg/debian/tmp/mpi/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make clean make[2]: Entering directory '/build/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot refine_mpi preprocess_mpi autopick_mpi particle_polish_mpi particle_sort_mpi run_ctffind_mpi mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/build/relion-1.4+dfsg' # ... then add GUI (for relion-bin+gui) ... dh_auto_configure -- --libdir=\${prefix}/lib/x86_64-linux-gnu --enable-gui \ CPPFLAGS="$(fltk-config --cxxflags)" \ LDFLAGS="$(fltk-config --ldflags)" ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/x86_64-linux-gnu --enable-gui "CPPFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 " "LDFLAGS=-lfltk -lX11" configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking for /usr/bin/fltk-config... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/gui/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat 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-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp /bin/bash ./libtool 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-I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid 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-I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o src/time.cpp: In member function 'int Timer::toc(int)': src/time.cpp:223:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 In file included from src/displayer.cpp:21: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/displayer.cpp: In member function 'int basisViewerCanvas::fill(MetaDataTable&, EMDLabel, bool, double, double, double, double, int)': src/displayer.cpp:412:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/displayer.cpp: In member function 'int basisViewerCanvas::fill(MultidimArray&, double, double, double, double)': src/displayer.cpp:429:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp src/displayer.cpp: In member function 'int basisViewerWindow::fillCanvas(int, MetaDataTable&, EMDLabel, bool, bool, double, double, double, double, double, int, bool, MetaDataTable*, int, bool, MetaDataTable*)': src/displayer.cpp:170:36: warning: control reaches end of non-void function [-Wreturn-type] Fl_Scroll scroll(0, 0, w(), h()); ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 src/displayer.cpp: In member function 'int Displayer::runGui()': src/displayer.cpp:1783:53: warning: control reaches end of non-void function [-Wreturn-type] "Choose file to display"); // title ^ src/displayer.cpp: In member function 'int Displayer::run()': src/displayer.cpp:1967:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 In file included from src/apps/display.cpp:31: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/displayer.o src/gui_entries.o src/gui_jobwindow.o src/gui_mainwindow.o src/manualpicker.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine src/apps/refine.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c manualpick '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_manualpick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/manualpick /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_manualpick /bin/bash ./libtool --mode=install /usr/bin/install -c display '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_display' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/display /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_display /bin/bash ./libtool --mode=install /usr/bin/install -c maingui '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_maingui' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/maingui /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_maingui /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/build/relion-1.4+dfsg/debian/tmp/gui/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h src/displayer.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/manualpicker.h '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/build/relion-1.4+dfsg/debian/tmp/gui/usr/include/relion-1.4/.' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/build/relion-1.4+dfsg/debian/tmp/gui/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make clean make[2]: Entering directory '/build/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot manualpick display maingui mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/build/relion-1.4+dfsg' # ... finally add MPI + GUI (for librelion-bin+mpi+gui) MPICXX=mpicxx.openmpi dh_auto_configure -- --libdir=\${prefix}/lib/x86_64-linux-gnu --enable-mpi --enable-gui \ CPPFLAGS="$(fltk-config --cxxflags)" \ LDFLAGS="$(fltk-config --ldflags)" ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/x86_64-linux-gnu --enable-mpi --enable-gui "CPPFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 " "LDFLAGS=-lfltk -lX11" configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for mpic++... mpicxx.openmpi checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking for /usr/bin/fltk-config... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j15; make install prefix=/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr make[2]: Entering directory '/build/relion-1.4+dfsg' make all-am make[3]: Entering directory '/build/relion-1.4+dfsg' mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 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-I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o src/time.cpp: In member function 'int Timer::toc(int)': src/time.cpp:223:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -fPIC -DPIC -o src/.libs/mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o src/mpi.cpp: In constructor 'MpiNode::MpiNode(int&, char**)': src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); ^ In file included from ./src/mpi.h:47, from src/mpi.cpp:46: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); ^ In file included from ./src/mpi.h:47, from src/mpi.cpp:46: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o In file included from src/displayer.cpp:21: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/displayer.cpp: In member function 'int basisViewerCanvas::fill(MetaDataTable&, EMDLabel, bool, double, double, double, double, int)': src/displayer.cpp:412:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/displayer.cpp: In member function 'int basisViewerCanvas::fill(MultidimArray&, double, double, double, double)': src/displayer.cpp:429:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 src/displayer.cpp: In member function 'int basisViewerWindow::fillCanvas(int, MetaDataTable&, EMDLabel, bool, bool, double, double, double, double, double, int, bool, MetaDataTable*, int, bool, MetaDataTable*)': src/displayer.cpp:170:36: warning: control reaches end of non-void function [-Wreturn-type] Fl_Scroll scroll(0, 0, w(), h()); ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o src/displayer.cpp: In member function 'int Displayer::runGui()': src/displayer.cpp:1783:53: warning: control reaches end of non-void function [-Wreturn-type] "Choose file to display"); // title ^ src/displayer.cpp: In member function 'int Displayer::run()': src/displayer.cpp:1967:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine_mpi.o src/apps/refine_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind_mpi.o src/apps/run_ctffind_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp In file included from src/apps/display.cpp:31: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo 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src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/mpi.o src/autopicker_mpi.o src/ctffind_runner_mpi.o src/particle_polisher_mpi.o src/particle_sorter_mpi.o src/preprocessing_mpi.o src/ml_optimiser_mpi.o src/displayer.o src/gui_entries.o src/gui_jobwindow.o src/gui_mainwindow.o src/manualpicker.o ar: 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-Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Entering directory '/build/relion-1.4+dfsg' make[3]: Entering directory '/build/relion-1.4+dfsg' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c librelion-1.4.la '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/librelion-1.4.so.1.0.4 /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so.1 || { rm -f librelion-1.4.so.1 && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so.1; }; }) libtool: install: (cd /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu && { ln -s -f librelion-1.4.so.1.0.4 librelion-1.4.so || { rm -f librelion-1.4.so && ln -s librelion-1.4.so.1.0.4 librelion-1.4.so; }; }) libtool: install: /usr/bin/install -c .libs/librelion-1.4.lai /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/librelion-1.4.la libtool: install: /usr/bin/install -c .libs/librelion-1.4.a /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: chmod 644 /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: install: ranlib /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/librelion-1.4.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c project '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_project' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/project /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_project /bin/bash ./libtool --mode=install /usr/bin/install -c reconstruct '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_reconstruct' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/reconstruct /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_reconstruct /bin/bash ./libtool --mode=install /usr/bin/install -c refine '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess /bin/bash ./libtool --mode=install /usr/bin/install -c postprocess '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_postprocess' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/postprocess /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_postprocess /bin/bash ./libtool --mode=install /usr/bin/install -c autopick '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind /bin/bash ./libtool --mode=install /usr/bin/install -c star_compare '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_compare' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/star_compare /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_compare /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot /bin/bash ./libtool --mode=install /usr/bin/install -c refine_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/refine_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_refine_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c preprocess_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/preprocess_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_preprocess_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c autopick_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/autopick_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_autopick_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_polish_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_polish_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_polish_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c particle_sort_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/particle_sort_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_particle_sort_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c run_ctffind_mpi '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind_mpi' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/run_ctffind_mpi /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_run_ctffind_mpi /bin/bash ./libtool --mode=install /usr/bin/install -c manualpick '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_manualpick' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/manualpick /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_manualpick /bin/bash ./libtool --mode=install /usr/bin/install -c display '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_display' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/display /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_display /bin/bash ./libtool --mode=install /usr/bin/install -c maingui '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_maingui' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/maingui /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_maingui /bin/bash ./libtool --mode=install /usr/bin/install -c mask_create '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_mask_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/mask_create /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_mask_create /bin/bash ./libtool --mode=install /usr/bin/install -c stack_create '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_stack_create' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/stack_create /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_stack_create /bin/bash ./libtool --mode=install /usr/bin/install -c image_handler '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_image_handler' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/image_handler /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_image_handler /bin/bash ./libtool --mode=install /usr/bin/install -c find_tiltpairs '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/find_tiltpairs /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_find_tiltpairs /bin/bash ./libtool --mode=install /usr/bin/install -c tiltpair_plot '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot' libtool: warning: 'librelion-1.4.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/tiltpair_plot /build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_tiltpair_plot /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin' /usr/bin/install -c scripts/star_datablock_ctfdat '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_datablock_ctfdat' /usr/bin/install -c scripts/star_datablock_stack '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_datablock_stack' /usr/bin/install -c scripts/star_datablock_singlefiles '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_datablock_singlefiles' /usr/bin/install -c scripts/star_loopheader '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_loopheader' /usr/bin/install -c scripts/star_plottable '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_plottable' /usr/bin/install -c scripts/star_printtable '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_star_printtable' /usr/bin/install -c scripts/qsub.csh '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/bin/./relion_qsub.csh' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/args.h src/assembly.h src/autopicker.h src/backprojector.h src/complex.h src/ctf.h src/ctffind_runner.h src/displayer.h src/error.h src/euler.h src/exp_model.h src/fftw.h src/filename.h src/funcs.h src/gcc_version.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/healpix_sampling.h src/image.h src/macros.h src/mask.h src/matrix1d.h src/matrix2d.h src/memory.h src/metadata_container.h src/metadata_label.h src/metadata_table.h src/ml_model.h src/ml_optimiser.h src/multidim_array.h src/numerical_recipes.h src/parallel.h src/particle_polisher.h src/particle_sorter.h src/postprocessing.h src/preprocessing.h src/projector.h src/rwIMAGIC.h src/rwMRC.h '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /usr/bin/install -c -m 644 src/rwSPIDER.h src/strings.h src/symmetries.h src/tabfuncs.h src/time.h src/transformations.h src/mpi.h src/autopicker_mpi.h src/ctffind_runner_mpi.h src/particle_polisher_mpi.h src/particle_sorter_mpi.h src/preprocessing_mpi.h src/ml_optimiser_mpi.h src/displayer.h src/gui_entries.h src/gui_jobwindow.h src/gui_mainwindow.h src/manualpicker.h '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 src/Healpix_2.15a/arr.h src/Healpix_2.15a/cxxutils.h src/Healpix_2.15a/datatypes.h src/Healpix_2.15a/geom_utils.h src/Healpix_2.15a/lsconstants.h src/Healpix_2.15a/message_error.h src/Healpix_2.15a/openmp_support.h src/Healpix_2.15a/pointing.h src/Healpix_2.15a/vec3.h src/Healpix_2.15a/healpix_base.h '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/src/Healpix_2.15a' /usr/bin/install -c -m 644 relion.h '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/include/relion-1.4/.' /bin/mkdir -p '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 relion-1.4.pc '/build/relion-1.4+dfsg/debian/tmp/mpi+gui/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/relion-1.4+dfsg' make[2]: Leaving directory '/build/relion-1.4+dfsg' make clean make[2]: Entering directory '/build/relion-1.4+dfsg' rm -f project reconstruct refine preprocess postprocess autopick particle_polish particle_sort run_ctffind star_compare find_tiltpairs tiltpair_plot refine_mpi preprocess_mpi autopick_mpi particle_polish_mpi particle_sort_mpi run_ctffind_mpi manualpick display maingui mask_create stack_create image_handler find_tiltpairs tiltpair_plot test -z "librelion-1.4.la" || rm -f librelion-1.4.la rm -f ./so_locations rm -rf .libs _libs rm -rf src/.libs src/_libs rm -rf src/Healpix_2.15a/.libs src/Healpix_2.15a/_libs rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f src/Healpix_2.15a/*.o rm -f src/Healpix_2.15a/*.lo rm -f src/apps/*.o rm -f *.lo make[2]: Leaving directory '/build/relion-1.4+dfsg' # clear dependency_libs field in *.la files # see lintian non-empty-dependency_libs-in-la-file for reference sed -i "/dependency_libs/ s/'.*'/''/" $(find debian/tmp/ -name '*.la') make[1]: Leaving directory '/build/relion-1.4+dfsg' dh_auto_test make -j15 check VERBOSE=1 make[1]: Entering directory '/build/relion-1.4+dfsg' mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/project.o src/apps/project.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 src/assembly.cpp: In member function 'void Assembly::writePDB(std::__cxx11::string)': src/assembly.cpp:355:19: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(file, "ATOM %5d %-4s %3s %1c%4d %8.3f%8.3f%8.3f%6.2f%6.2f %4s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ~~~~~~~ src/args.cpp: In member function 'IOParser& IOParser::operator=(const IOParser&)': src/args.cpp:104:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -o src/image.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -o src/backprojector.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/memory.lo src/memory.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_container.lo src/metadata_container.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -fPIC -DPIC -o src/.libs/memory.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -fPIC -DPIC -o src/.libs/metadata_container.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_label.lo src/metadata_label.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/metadata_table.lo src/metadata_table.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -fPIC -DPIC -o src/.libs/metadata_label.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -fPIC -DPIC -o src/.libs/metadata_table.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_model.lo src/ml_model.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser.lo src/ml_optimiser.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -fPIC -DPIC -o src/.libs/ml_model.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -fPIC -DPIC -o src/.libs/ml_optimiser.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/memory.cpp -o src/memory.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/multidim_array.lo src/multidim_array.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -fPIC -DPIC -o src/.libs/multidim_array.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_container.cpp -o src/metadata_container.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/numerical_recipes.lo src/numerical_recipes.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -o src/ctffind_runner.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -fPIC -DPIC -o src/.libs/numerical_recipes.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/parallel.lo src/parallel.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/multidim_array.cpp -o src/multidim_array.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -fPIC -DPIC -o src/.libs/parallel.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -o src/exp_model.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/numerical_recipes.cpp -o src/numerical_recipes.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/parallel.cpp -o src/parallel.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher.lo src/particle_polisher.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter.lo src/particle_sorter.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -fPIC -DPIC -o src/.libs/particle_polisher.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -fPIC -DPIC -o src/.libs/particle_sorter.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_table.cpp -o src/metadata_table.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -o src/autopicker.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/postprocessing.lo src/postprocessing.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -fPIC -DPIC -o src/.libs/postprocessing.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing.lo src/preprocessing.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/projector.lo src/projector.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -fPIC -DPIC -o src/.libs/preprocessing.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -fPIC -DPIC -o src/.libs/projector.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/strings.lo src/strings.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -fPIC -DPIC -o src/.libs/strings.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/symmetries.lo src/symmetries.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -fPIC -DPIC -o src/.libs/symmetries.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/strings.cpp -o src/strings.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/tabfuncs.lo src/tabfuncs.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -fPIC -DPIC -o src/.libs/tabfuncs.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/time.lo src/time.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -fPIC -DPIC -o src/.libs/time.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/transformations.lo src/transformations.cpp src/time.cpp: In member function 'int Timer::toc(int)': src/time.cpp:223:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -fPIC -DPIC -o src/.libs/transformations.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/time.cpp -o src/time.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/projector.cpp -o src/projector.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/tabfuncs.cpp -o src/tabfuncs.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/cxxutils.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/cxxutils.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/Healpix_2.15a/healpix_base.lo src/Healpix_2.15a/healpix_base.cc libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -fPIC -DPIC -o src/Healpix_2.15a/.libs/healpix_base.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mpi.lo src/mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -fPIC -DPIC -o src/.libs/mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/transformations.cpp -o src/transformations.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter.cpp -o src/particle_sorter.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_model.cpp -o src/ml_model.o >/dev/null 2>&1 src/mpi.cpp: In constructor 'MpiNode::MpiNode(int&, char**)': src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); ^ In file included from ./src/mpi.h:47, from src/mpi.cpp:46: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ src/mpi.cpp:56:57: warning: 'int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler)' is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); ^ In file included from ./src/mpi.h:47, from src/mpi.cpp:46: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1338:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/symmetries.cpp -o src/symmetries.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/healpix_base.cc -o src/Healpix_2.15a/healpix_base.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mpi.cpp -o src/mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/postprocessing.cpp -o src/postprocessing.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing.cpp -o src/preprocessing.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner_mpi.lo src/ctffind_runner_mpi.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_polisher_mpi.lo src/particle_polisher_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -fPIC -DPIC -o src/.libs/ctffind_runner_mpi.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/particle_sorter_mpi.lo src/particle_sorter_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -fPIC -DPIC -o src/.libs/particle_polisher_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp -o src/autopicker_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -fPIC -DPIC -o src/.libs/particle_sorter_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/Healpix_2.15a/cxxutils.cc -o src/Healpix_2.15a/cxxutils.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/preprocessing_mpi.lo src/preprocessing_mpi.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ml_optimiser_mpi.lo src/ml_optimiser_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -fPIC -DPIC -o src/.libs/preprocessing_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -fPIC -DPIC -o src/.libs/ml_optimiser_mpi.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner_mpi.cpp -o src/ctffind_runner_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/displayer.lo src/displayer.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -fPIC -DPIC -o src/.libs/displayer.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/preprocessing_mpi.cpp -o src/preprocessing_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_sorter_mpi.cpp -o src/particle_sorter_mpi.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_entries.lo src/gui_entries.cpp /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_jobwindow.lo src/gui_jobwindow.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -fPIC -DPIC -o src/.libs/gui_entries.o /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/gui_mainwindow.lo src/gui_mainwindow.cpp In file included from src/displayer.cpp:21: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/displayer.cpp: In member function 'int basisViewerCanvas::fill(MetaDataTable&, EMDLabel, bool, double, double, double, double, int)': src/displayer.cpp:412:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ src/displayer.cpp: In member function 'int basisViewerCanvas::fill(MultidimArray&, double, double, double, double)': src/displayer.cpp:429:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -fPIC -DPIC -o src/.libs/gui_jobwindow.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher.cpp -o src/particle_polisher.o >/dev/null 2>&1 src/displayer.cpp: In member function 'int basisViewerWindow::fillCanvas(int, MetaDataTable&, EMDLabel, bool, bool, double, double, double, double, double, int, bool, MetaDataTable*, int, bool, MetaDataTable*)': src/displayer.cpp:170:36: warning: control reaches end of non-void function [-Wreturn-type] Fl_Scroll scroll(0, 0, w(), h()); ^ /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/manualpicker.lo src/manualpicker.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -fPIC -DPIC -o src/.libs/gui_mainwindow.o src/displayer.cpp: In member function 'int Displayer::runGui()': src/displayer.cpp:1783:53: warning: control reaches end of non-void function [-Wreturn-type] "Choose file to display"); // title ^ src/displayer.cpp: In member function 'int Displayer::run()': src/displayer.cpp:1967:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -fPIC -DPIC -o src/.libs/manualpicker.o libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_entries.cpp -o src/gui_entries.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/particle_polisher_mpi.cpp -o src/particle_polisher_mpi.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/reconstruct.o src/apps/reconstruct.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_mainwindow.cpp -o src/gui_mainwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine.o src/apps/refine.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess.o src/apps/preprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/postprocess.o src/apps/postprocess.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick.o src/apps/autopick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish.o src/apps/particle_polish.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort.o src/apps/particle_sort.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind.o src/apps/run_ctffind.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/star_compare.o src/apps/star_compare.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser_mpi.cpp -o src/ml_optimiser_mpi.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/manualpicker.cpp -o src/manualpicker.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/find_tiltpairs.o src/apps/find_tiltpairs.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/tiltpair_plot.o src/apps/tiltpair_plot.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/refine_mpi.o src/apps/refine_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/preprocess_mpi.o src/apps/preprocess_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/autopick_mpi.o src/apps/autopick_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_polish_mpi.o src/apps/particle_polish_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/particle_sort_mpi.o src/apps/particle_sort_mpi.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/metadata_label.cpp -o src/metadata_label.o >/dev/null 2>&1 libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/displayer.cpp -o src/displayer.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/run_ctffind_mpi.o src/apps/run_ctffind_mpi.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/manualpick.o src/apps/manualpick.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/display.o src/apps/display.cpp libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/gui_jobwindow.cpp -o src/gui_jobwindow.o >/dev/null 2>&1 mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/maingui.o src/apps/maingui.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/mask_create.o src/apps/mask_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/stack_create.o src/apps/stack_create.cpp mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/apps/image_handler.o src/apps/image_handler.cpp In file included from src/apps/display.cpp:31: ./src/displayer.h: In member function 'int popupInputWindow::fill(std::__cxx11::string, double&)': ./src/displayer.h:327:2: warning: no return statement in function returning non-void [-Wreturn-type] } ^ libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ml_optimiser.cpp -o src/ml_optimiser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:4:0 -lfltk -lX11 -o librelion-1.4.la -rpath /usr/lib/x86_64-linux-gnu src/args.lo src/assembly.lo src/autopicker.lo src/backprojector.lo src/complex.lo src/ctf.lo src/ctffind_runner.lo src/error.lo src/euler.lo src/exp_model.lo src/fftw.lo src/filename.lo src/funcs.lo src/healpix_sampling.lo src/image.lo src/mask.lo src/matrix1d.lo src/matrix2d.lo src/memory.lo src/metadata_container.lo src/metadata_label.lo src/metadata_table.lo src/ml_model.lo src/ml_optimiser.lo src/multidim_array.lo src/numerical_recipes.lo src/parallel.lo src/particle_polisher.lo src/particle_sorter.lo src/postprocessing.lo src/preprocessing.lo src/projector.lo src/strings.lo src/symmetries.lo src/tabfuncs.lo src/time.lo src/transformations.lo src/Healpix_2.15a/cxxutils.lo src/Healpix_2.15a/healpix_base.lo src/mpi.lo src/autopicker_mpi.lo src/ctffind_runner_mpi.lo src/particle_polisher_mpi.lo src/particle_sorter_mpi.lo src/preprocessing_mpi.lo src/ml_optimiser_mpi.lo src/displayer.lo src/gui_entries.lo src/gui_jobwindow.lo src/gui_mainwindow.lo src/manualpicker.lo -lfftw3_threads -lfftw3 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o src/.libs/args.o src/.libs/assembly.o src/.libs/autopicker.o src/.libs/backprojector.o src/.libs/complex.o src/.libs/ctf.o src/.libs/ctffind_runner.o src/.libs/error.o src/.libs/euler.o src/.libs/exp_model.o src/.libs/fftw.o src/.libs/filename.o src/.libs/funcs.o src/.libs/healpix_sampling.o src/.libs/image.o src/.libs/mask.o src/.libs/matrix1d.o src/.libs/matrix2d.o src/.libs/memory.o src/.libs/metadata_container.o src/.libs/metadata_label.o src/.libs/metadata_table.o src/.libs/ml_model.o src/.libs/ml_optimiser.o src/.libs/multidim_array.o src/.libs/numerical_recipes.o src/.libs/parallel.o src/.libs/particle_polisher.o src/.libs/particle_sorter.o src/.libs/postprocessing.o src/.libs/preprocessing.o src/.libs/projector.o src/.libs/strings.o src/.libs/symmetries.o src/.libs/tabfuncs.o src/.libs/time.o src/.libs/transformations.o src/Healpix_2.15a/.libs/cxxutils.o src/Healpix_2.15a/.libs/healpix_base.o src/.libs/mpi.o src/.libs/autopicker_mpi.o src/.libs/ctffind_runner_mpi.o src/.libs/particle_polisher_mpi.o src/.libs/particle_sorter_mpi.o src/.libs/preprocessing_mpi.o src/.libs/ml_optimiser_mpi.o src/.libs/displayer.o src/.libs/gui_entries.o src/.libs/gui_jobwindow.o src/.libs/gui_mainwindow.o src/.libs/manualpicker.o -lfltk -lX11 -lfftw3_threads -lfftw3 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-soname -Wl,librelion-1.4.so.1 -o .libs/librelion-1.4.so.1.0.4 libtool: link: (cd ".libs" && rm -f "librelion-1.4.so.1" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so.1") libtool: link: (cd ".libs" && rm -f "librelion-1.4.so" && ln -s "librelion-1.4.so.1.0.4" "librelion-1.4.so") libtool: link: ar cru .libs/librelion-1.4.a src/args.o src/assembly.o src/autopicker.o src/backprojector.o src/complex.o src/ctf.o src/ctffind_runner.o src/error.o src/euler.o src/exp_model.o src/fftw.o src/filename.o src/funcs.o src/healpix_sampling.o src/image.o src/mask.o src/matrix1d.o src/matrix2d.o src/memory.o src/metadata_container.o src/metadata_label.o src/metadata_table.o src/ml_model.o src/ml_optimiser.o src/multidim_array.o src/numerical_recipes.o src/parallel.o src/particle_polisher.o src/particle_sorter.o src/postprocessing.o src/preprocessing.o src/projector.o src/strings.o src/symmetries.o src/tabfuncs.o src/time.o src/transformations.o src/Healpix_2.15a/cxxutils.o src/Healpix_2.15a/healpix_base.o src/mpi.o src/autopicker_mpi.o src/ctffind_runner_mpi.o src/particle_polisher_mpi.o src/particle_sorter_mpi.o src/preprocessing_mpi.o src/ml_optimiser_mpi.o src/displayer.o src/gui_entries.o src/gui_jobwindow.o src/gui_mainwindow.o src/manualpicker.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librelion-1.4.a libtool: link: ( cd ".libs" && rm -f "librelion-1.4.la" && ln -s "../librelion-1.4.la" "librelion-1.4.la" ) /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o project src/apps/project.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o reconstruct src/apps/reconstruct.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine src/apps/refine.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess src/apps/preprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o postprocess src/apps/postprocess.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick src/apps/autopick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish src/apps/particle_polish.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort src/apps/particle_sort.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind src/apps/run_ctffind.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o star_compare src/apps/star_compare.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o find_tiltpairs src/apps/find_tiltpairs.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o tiltpair_plot src/apps/tiltpair_plot.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o refine_mpi src/apps/refine_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o preprocess_mpi src/apps/preprocess_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o autopick_mpi src/apps/autopick_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/postprocess src/apps/postprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/project src/apps/project.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick_mpi src/apps/autopick_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/reconstruct src/apps/reconstruct.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind src/apps/run_ctffind.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine src/apps/refine.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess_mpi src/apps/preprocess_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort src/apps/particle_sort.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/autopick src/apps/autopick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/find_tiltpairs src/apps/find_tiltpairs.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/preprocess src/apps/preprocess.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish src/apps/particle_polish.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/star_compare src/apps/star_compare.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/refine_mpi src/apps/refine_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/tiltpair_plot src/apps/tiltpair_plot.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_polish_mpi src/apps/particle_polish_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o particle_sort_mpi src/apps/particle_sort_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o run_ctffind_mpi src/apps/run_ctffind_mpi.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o manualpick src/apps/manualpick.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o display src/apps/display.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o maingui src/apps/maingui.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o mask_create src/apps/mask_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o stack_create src/apps/stack_create.o librelion-1.4.la -lfftw3_threads -lfftw3 /bin/bash ./libtool --tag=CXX --mode=link mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lfltk -lX11 -o image_handler src/apps/image_handler.o librelion-1.4.la -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_polish_mpi src/apps/particle_polish_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/run_ctffind_mpi src/apps/run_ctffind_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/particle_sort_mpi src/apps/particle_sort_mpi.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/display src/apps/display.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/manualpick src/apps/manualpick.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mask_create src/apps/mask_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/stack_create src/apps/stack_create.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/maingui src/apps/maingui.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 libtool: link: mpicxx.openmpi -g -O2 -ffile-prefix-map=/build/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/image_handler src/apps/image_handler.o -lfltk -lX11 ./.libs/librelion-1.4.so -lfftw3_threads -lfftw3 make[1]: Leaving directory '/build/relion-1.4+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh binary dh_testroot debian/rules override_dh_prep make[1]: Entering directory '/build/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # We don't want debian/tmp to be removed again ... dh_prep -X debian/tmp make[1]: Leaving directory '/build/relion-1.4+dfsg' debian/rules override_dh_install-arch make[1]: Entering directory '/build/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh_install -a # relion_qsub.csh should just go to GUI d/examples find debian/relion-bi*/usr/bin -name relion_qsub.csh -delete make[1]: Leaving directory '/build/relion-1.4+dfsg' dh_install -Nrelion-bin -Nrelion-bin\+mpi -Nrelion-bin\+gui -Nrelion-bin\+mpi\+gui -Nlibrelion-dev -Nlibrelion\+mpi-dev -Nlibrelion\+gui-dev -Nlibrelion\+mpi\+gui-dev -Nlibrelion-1.4-1 -Nlibrelion\+mpi-1.4-1 -Nlibrelion\+gui-1.4-1 -Nlibrelion\+mpi\+gui-1.4-1 dh_installdocs dh_installchangelogs dh_installexamples dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # First for all packages apart from relion-bin* dh_shlibdeps -- -xrelion-bin -xrelion-bin+mpi -xrelion-bin+gui -xrelion-bin+mpi+gui dpkg-shlibdeps: warning: symbol MPI_Comm_rank used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Type_get_name used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Info_get_valuelen used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Request_get_status used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Type_indexed used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol ompi_mpi_cxx_op_intercept used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Win_complete used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Gatherv used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Graph_neighbors_count used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Recv used by debian/librelion+mpi-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_join used by debian/librelion-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: 165 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol MPI_Cart_coords used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Put used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Type_size used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Graph_get used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Comm_set_name used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Ssend used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Alltoall used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Group_range_excl used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Op_create used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol MPI_Comm_set_attr used by debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: 165 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librelion+mpi+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 was not linked against libX11.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: symbol pthread_create used by debian/librelion+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_join used by debian/librelion+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librelion+gui-1.4-1/usr/lib/x86_64-linux-gnu/librelion-1.4.so.1.0.4 was not linked against libX11.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_maingui contains an unresolvable reference to symbol _ZN16RelionMainWindowC1EiiPKc: it's probably a plugin dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi contains an unresolvable reference to symbol _ZN13AutoPickerMpi3runEv: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_reconstruct were not linked against libfftw3.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_star_compare debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_reconstruct were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi contains an unresolvable reference to symbol _ZN16PreprocessingMpi3runEv: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_manualpick contains an unresolvable reference to symbol _ZN12ManualPicker10initialiseEv: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi contains an unresolvable reference to symbol _ZN14MlOptimiserMpi4readEiPPc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_image_handler were not linked against libfftw3.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_image_handler were not linked against libX11.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_particle_polish debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_image_handler were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_display contains an unresolvable reference to symbol _ZN9Displayer10initialiseEv: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi contains an unresolvable reference to symbol _ZN19ParticlePolisherMpi3runEv: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi contains an unresolvable reference to symbol _ZN17ParticleSorterMpi3runEv: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi contains an unresolvable reference to symbol _ZN16CtffindRunnerMpi4readEiPPc: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi were not linked against libfftw3.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi were not linked against libX11.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi were not linked against libfftw3.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_reconstruct debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) # Now for the relion-bin* packages for pkg in relion-bin relion-bin+mpi relion-bin+gui relion-bin+mpi+gui ; do \ echo -e "\n-- Info: Run dpkg-shlibdeps for $pkg --\n"; \ dpkg-shlibdeps -e debian/${pkg}/usr/bin/relion_* \ -Sdebian/librelion${pkg#relion-bin}-1.4-1 \ -Tdebian/${pkg}.substvars; \ done -e -- Info: Run dpkg-shlibdeps for relion-bin -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin/usr/bin/relion_star_printtable' dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_star_compare were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin/usr/bin/relion_run_ctffind debian/relion-bin/usr/bin/relion_stack_create debian/relion-bin/usr/bin/relion_refine debian/relion-bin/usr/bin/relion_project debian/relion-bin/usr/bin/relion_particle_sort debian/relion-bin/usr/bin/relion_autopick debian/relion-bin/usr/bin/relion_mask_create debian/relion-bin/usr/bin/relion_particle_polish debian/relion-bin/usr/bin/relion_reconstruct debian/relion-bin/usr/bin/relion_find_tiltpairs debian/relion-bin/usr/bin/relion_tiltpair_plot debian/relion-bin/usr/bin/relion_image_handler debian/relion-bin/usr/bin/relion_postprocess debian/relion-bin/usr/bin/relion_preprocess debian/relion-bin/usr/bin/relion_star_compare were not linked against libfftw3.so.3 (they use none of the library's symbols) -e -- Info: Run dpkg-shlibdeps for relion-bin+mpi -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi/usr/bin/relion_star_printtable' dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_reconstruct were not linked against libfftw3.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi/usr/bin/relion_run_ctffind debian/relion-bin+mpi/usr/bin/relion_particle_polish_mpi debian/relion-bin+mpi/usr/bin/relion_image_handler debian/relion-bin+mpi/usr/bin/relion_stack_create debian/relion-bin+mpi/usr/bin/relion_autopick_mpi debian/relion-bin+mpi/usr/bin/relion_mask_create debian/relion-bin+mpi/usr/bin/relion_particle_polish debian/relion-bin+mpi/usr/bin/relion_project debian/relion-bin+mpi/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi/usr/bin/relion_particle_sort debian/relion-bin+mpi/usr/bin/relion_star_compare debian/relion-bin+mpi/usr/bin/relion_refine debian/relion-bin+mpi/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi/usr/bin/relion_autopick debian/relion-bin+mpi/usr/bin/relion_preprocess debian/relion-bin+mpi/usr/bin/relion_refine_mpi debian/relion-bin+mpi/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi/usr/bin/relion_postprocess debian/relion-bin+mpi/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi/usr/bin/relion_reconstruct were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) -e -- Info: Run dpkg-shlibdeps for relion-bin+gui -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_printtable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+gui/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_polish were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_polish were not linked against libfftw3.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+gui/usr/bin/relion_refine debian/relion-bin+gui/usr/bin/relion_particle_sort debian/relion-bin+gui/usr/bin/relion_preprocess debian/relion-bin+gui/usr/bin/relion_postprocess debian/relion-bin+gui/usr/bin/relion_display debian/relion-bin+gui/usr/bin/relion_manualpick debian/relion-bin+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+gui/usr/bin/relion_autopick debian/relion-bin+gui/usr/bin/relion_image_handler debian/relion-bin+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+gui/usr/bin/relion_run_ctffind debian/relion-bin+gui/usr/bin/relion_mask_create debian/relion-bin+gui/usr/bin/relion_star_compare debian/relion-bin+gui/usr/bin/relion_reconstruct debian/relion-bin+gui/usr/bin/relion_project debian/relion-bin+gui/usr/bin/relion_maingui debian/relion-bin+gui/usr/bin/relion_stack_create debian/relion-bin+gui/usr/bin/relion_particle_polish were not linked against libX11.so.6 (they use none of the library's symbols) -e -- Info: Run dpkg-shlibdeps for relion-bin+mpi+gui -- dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_singlefiles' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_ctfdat' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_plottable' dpkg-shlibdeps: warning: binaries to analyze should already be installed in their package's directory dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_printtable' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_loopheader' dpkg-shlibdeps: warning: unknown executable format in file 'debian/relion-bin+mpi+gui/usr/bin/relion_star_datablock_stack' dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi were not linked against libX11.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi were not linked against libfftw3.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/relion-bin+mpi+gui/usr/bin/relion_preprocess_mpi debian/relion-bin+mpi+gui/usr/bin/relion_mask_create debian/relion-bin+mpi+gui/usr/bin/relion_star_compare debian/relion-bin+mpi+gui/usr/bin/relion_postprocess debian/relion-bin+mpi+gui/usr/bin/relion_manualpick debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort debian/relion-bin+mpi+gui/usr/bin/relion_maingui debian/relion-bin+mpi+gui/usr/bin/relion_preprocess debian/relion-bin+mpi+gui/usr/bin/relion_refine debian/relion-bin+mpi+gui/usr/bin/relion_autopick debian/relion-bin+mpi+gui/usr/bin/relion_project debian/relion-bin+mpi+gui/usr/bin/relion_stack_create debian/relion-bin+mpi+gui/usr/bin/relion_particle_sort_mpi debian/relion-bin+mpi+gui/usr/bin/relion_find_tiltpairs debian/relion-bin+mpi+gui/usr/bin/relion_tiltpair_plot debian/relion-bin+mpi+gui/usr/bin/relion_reconstruct debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind_mpi debian/relion-bin+mpi+gui/usr/bin/relion_refine_mpi debian/relion-bin+mpi+gui/usr/bin/relion_display debian/relion-bin+mpi+gui/usr/bin/relion_autopick_mpi debian/relion-bin+mpi+gui/usr/bin/relion_image_handler debian/relion-bin+mpi+gui/usr/bin/relion_run_ctffind debian/relion-bin+mpi+gui/usr/bin/relion_particle_polish_mpi were not linked against libfftw3_threads.so.3 (they use none of the library's symbols) make[1]: Leaving directory '/build/relion-1.4+dfsg' dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'librelion+mpi+gui-dev' in '../librelion+mpi+gui-dev_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin' in '../relion-bin_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+mpi' in '../relion-bin+mpi_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+mpi+gui' in '../relion-bin+mpi+gui_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+gui' in '../relion-bin+gui_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+mpi-dev' in '../librelion+mpi-dev_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion-dev-common' in '../librelion-dev-common_1.4+dfsg-4_all.deb'. dpkg-deb: building package 'librelion+gui-1.4-1-dbgsym' in '../librelion+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion-1.4-1-dbgsym' in '../librelion-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+mpi-1.4-1-dbgsym' in '../librelion+mpi-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+mpi+gui-1.4-1-dbgsym' in '../librelion+mpi+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin-dbgsym' in '../relion-bin-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion-dev' in '../librelion-dev_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+gui-dbgsym' in '../relion-bin+gui-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+mpi-dbgsym' in '../relion-bin+mpi-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'relion-bin+mpi+gui-dbgsym' in '../relion-bin+mpi+gui-dbgsym_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+gui-dev' in '../librelion+gui-dev_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion-1.4-1' in '../librelion-1.4-1_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+mpi-1.4-1' in '../librelion+mpi-1.4-1_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+mpi+gui-1.4-1' in '../librelion+mpi+gui-1.4-1_1.4+dfsg-4_amd64.deb'. dpkg-deb: building package 'librelion+gui-1.4-1' in '../librelion+gui-1.4-1_1.4+dfsg-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../relion_1.4+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from relion-1.4+dfsg/debian/source/options: --compression=xz dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/41603 and its subdirectories I: Current time: Fri Jul 16 23:31:56 -12 2021 I: pbuilder-time-stamp: 1626521516 Sat Jul 17 11:31:58 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sat Jul 17 11:31:58 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sat Jul 17 11:54:09 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sat Jul 17 11:54:09 UTC 2021 I: relion_1.4+dfsg-4_amd64.changes: Format: 1.8 Date: Thu, 14 Jun 2018 14:10:42 +0200 Source: relion Binary: librelion+gui-1.4-1 librelion+gui-1.4-1-dbgsym librelion+gui-dev librelion+mpi+gui-1.4-1 librelion+mpi+gui-1.4-1-dbgsym librelion+mpi+gui-dev librelion+mpi-1.4-1 librelion+mpi-1.4-1-dbgsym librelion+mpi-dev librelion-1.4-1 librelion-1.4-1-dbgsym librelion-dev librelion-dev-common relion-bin relion-bin+gui relion-bin+gui-dbgsym relion-bin+mpi relion-bin+mpi+gui relion-bin+mpi+gui-dbgsym relion-bin+mpi-dbgsym relion-bin-dbgsym Architecture: amd64 all Version: 1.4+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: librelion+gui-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion+gui-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion+mpi+gui-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion+mpi+gui-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion+mpi-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion+mpi-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion-1.4-1 - RELION dynnamic library (3D reconstructions in cryo-electron micr librelion-dev - C++ API for RELION (3D reconstructions in cryo-electron microscop librelion-dev-common - C++ API for RELION (3D reconstructions in cryo-electron microscop relion-bin - toolkit for 3D reconstructions in cryo-electron microscopy relion-bin+gui - parallel toolkit for 3D reconstructions in cryo-electron microsco relion-bin+mpi - parallel toolkit for 3D reconstructions in cryo-electron microsco relion-bin+mpi+gui - parallel toolkit for 3D reconstructions in cryo-electron microsco Closes: 897239 Changes: relion (1.4+dfsg-4) unstable; urgency=medium . * Team upload. * Add watch file (and delete README.source that explains why there is no watch file) * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Restrict architectures to amd64 and i386 Closes: #897239 Checksums-Sha1: 7627a184c773fdc0e4b78d6293273b005e5e1a95 11076012 librelion+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb e91d5baac55409b181135d9247c0f6ae1c5467ff 650276 librelion+gui-1.4-1_1.4+dfsg-4_amd64.deb 23997bdb287312a0c93fddaebfbac303bbf2c122 787284 librelion+gui-dev_1.4+dfsg-4_amd64.deb 231b20f0f2bf67f6b498a96ebceaeb30c4712c49 12387060 librelion+mpi+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb 067ca730923c37baac90f540d969bd72d6372688 698984 librelion+mpi+gui-1.4-1_1.4+dfsg-4_amd64.deb 373a9e34c838a9e5986c2469bad33003a78a62b3 889184 librelion+mpi+gui-dev_1.4+dfsg-4_amd64.deb 8ed9e89dd4177fefd8be7cd28179e11694429d8b 10644336 librelion+mpi-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb 8a3805a0734ae4ee4f6bb77e65194940427a9567 589992 librelion+mpi-1.4-1_1.4+dfsg-4_amd64.deb 700abafb3a7f70c282fdeda63d35a81982162f1e 762612 librelion+mpi-dev_1.4+dfsg-4_amd64.deb 77fa745ad6ea8113fd2cc76f41c7d5504d954159 9316112 librelion-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb ddc40c56cd6fa593daa31d1bcc964017737ea628 540356 librelion-1.4-1_1.4+dfsg-4_amd64.deb bf8a9b025c6bc01e05e104825bb9d57a03b52e81 136204 librelion-dev-common_1.4+dfsg-4_all.deb 995db271d53ec4172c0aa32001233b6e90e5bd4a 659856 librelion-dev_1.4+dfsg-4_amd64.deb f18e00f065be8f0943a95713d2a4b6724c800890 4034192 relion-bin+gui-dbgsym_1.4+dfsg-4_amd64.deb df99866e11cf5fafea8c49714b903762225e30d7 190692 relion-bin+gui_1.4+dfsg-4_amd64.deb fd1ecd912037ed7eb7484530155e9d1fbd00880b 5344372 relion-bin+mpi+gui-dbgsym_1.4+dfsg-4_amd64.deb 0e060ab82bb9a2977826095d4239f38bb5fd57a1 237496 relion-bin+mpi+gui_1.4+dfsg-4_amd64.deb 313e09efcef8e4d27a3edf652ff87b3566b82642 5130160 relion-bin+mpi-dbgsym_1.4+dfsg-4_amd64.deb bb62b2dfecaefce158ee45c03c0a1b5227673030 237228 relion-bin+mpi_1.4+dfsg-4_amd64.deb cac16905b96f3b76d4c09c23501c710ebbfa8a30 3819948 relion-bin-dbgsym_1.4+dfsg-4_amd64.deb a217eca8e3ced1ee29d3b121bc0165bea4470f2a 189612 relion-bin_1.4+dfsg-4_amd64.deb 04ac23ba0752087adfeeb10c2044c80fa42d8cb9 13792 relion_1.4+dfsg-4_amd64.buildinfo Checksums-Sha256: 9c9ce85639a44f10447bbf4e624f9c03bbd0b2a158d24fb231b1e98ecf7f751a 11076012 librelion+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb ea1e75df23e48a6db2b36225af363a45568cfc6f3ea98ec0657f847f4c6170c5 650276 librelion+gui-1.4-1_1.4+dfsg-4_amd64.deb 7fbeec41ec45bcaeebf7861bc03d73c44958feb5a364df4cbe4568980c45500f 787284 librelion+gui-dev_1.4+dfsg-4_amd64.deb 942dca32934d369a8298adac10bc4ccf5ce9a4f23146c3b0d55eda140ae33515 12387060 librelion+mpi+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb 7590835e7e188db3a16e772cf4923571880d3cb95a812b789be5d7bf1d13574b 698984 librelion+mpi+gui-1.4-1_1.4+dfsg-4_amd64.deb c64d8671d4019498124a0b155e5869f03a73fa59abe40258be03211dacf03247 889184 librelion+mpi+gui-dev_1.4+dfsg-4_amd64.deb dc2a43aae8264907233934bd16d50c3926c91294b410ac90bebad22b3acaf5e0 10644336 librelion+mpi-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb fbd72ffde4d84c261546cafbffb80df4f4163c9dfa558974e67b379b380e7bdf 589992 librelion+mpi-1.4-1_1.4+dfsg-4_amd64.deb 5db52a42dc319e49627b8f390a16b0cd367d29c2ee125a252f0d6ec7e6b34b11 762612 librelion+mpi-dev_1.4+dfsg-4_amd64.deb 07ac71cda3552324a3869d4835603217ce0f7603e27a3bf7135c78b527752574 9316112 librelion-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb 62f7bf3e05cc3f36198854a2603117ca9b552609978c4f52e29c1cf39f27cb70 540356 librelion-1.4-1_1.4+dfsg-4_amd64.deb baeceee43a2ba6b1f036ad4b8f646fd489d7c65cf2a0dbedc67837f0c3fbaba6 136204 librelion-dev-common_1.4+dfsg-4_all.deb 959cf0f7a94d89a8117ef798da2ee479b21a85f9e947900c7aa0c97405002fc4 659856 librelion-dev_1.4+dfsg-4_amd64.deb acb4ef3338f442e9c329a3a023fbc4cde3129c8b6ade2de54ef20ecdd8126201 4034192 relion-bin+gui-dbgsym_1.4+dfsg-4_amd64.deb bef6d7d1f353d05a96ebef6733f8de225ef6033d6bed43b558554149bcf20b40 190692 relion-bin+gui_1.4+dfsg-4_amd64.deb fb439e52899b4d74ad8d39141ddd2ea49df35705722b8f1d4b8c60d8c0ef39bd 5344372 relion-bin+mpi+gui-dbgsym_1.4+dfsg-4_amd64.deb 3aabc71704cb113b803aca8dc412199aed0da3de04dbaf7d4ee6a48d27d4c6a5 237496 relion-bin+mpi+gui_1.4+dfsg-4_amd64.deb dd9345358915e6b01dbf86339653a02d22297c2f9757e39cd0bf1eb967244739 5130160 relion-bin+mpi-dbgsym_1.4+dfsg-4_amd64.deb cdf2de98e1d04499424205d89f15aa5ba6a027a6eb18302ce86493b8687b9c9a 237228 relion-bin+mpi_1.4+dfsg-4_amd64.deb 6fc6491bb527651b83b8b3943954297fa3b76e7364cac68bdd1c1b651b0077fc 3819948 relion-bin-dbgsym_1.4+dfsg-4_amd64.deb c67b06c3b5cf4b5f97aef090417f05fbf38800bf2fa0f1ff0bce7e3c879b96b3 189612 relion-bin_1.4+dfsg-4_amd64.deb 0ff1a5de9e21314e21f5fbd2fbab783f667d50e79d81e08ec03c31f532c09159 13792 relion_1.4+dfsg-4_amd64.buildinfo Files: f695c63235c65d1e9017d170b3ae1381 11076012 debug optional librelion+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb f215604d5e4484192d44c5c39622128e 650276 libs optional librelion+gui-1.4-1_1.4+dfsg-4_amd64.deb 75dab8ec95e31cff9d1c727c7879291d 787284 libdevel optional librelion+gui-dev_1.4+dfsg-4_amd64.deb 60d5874d95f0467e93d881d268ed71c5 12387060 debug optional librelion+mpi+gui-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb b13f0dce8d376690071121a43f441940 698984 libs optional librelion+mpi+gui-1.4-1_1.4+dfsg-4_amd64.deb a69ed42626d0ecfa838c30cd10caef3a 889184 libdevel optional librelion+mpi+gui-dev_1.4+dfsg-4_amd64.deb fd427659338bbc97500d388236927d7f 10644336 debug optional librelion+mpi-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb cd78c218dd410611a94a4351ff2d15ab 589992 libs optional librelion+mpi-1.4-1_1.4+dfsg-4_amd64.deb 89e60db473ec4a3ae30621765be8051e 762612 libdevel optional librelion+mpi-dev_1.4+dfsg-4_amd64.deb ede42913ef7f98986c63da764c63e6c7 9316112 debug optional librelion-1.4-1-dbgsym_1.4+dfsg-4_amd64.deb 0cb3c533b9e51da7ac33fd896bb34911 540356 libs optional librelion-1.4-1_1.4+dfsg-4_amd64.deb fc05ba8400b3810ca5e04f8096ab4c6a 136204 libdevel optional librelion-dev-common_1.4+dfsg-4_all.deb 3b2bca6d447748fbc63425e5069db2e7 659856 libdevel optional librelion-dev_1.4+dfsg-4_amd64.deb c5010c64d7f27725a51db2d33bbcf4c8 4034192 debug optional relion-bin+gui-dbgsym_1.4+dfsg-4_amd64.deb a749ead767e7d022bbf3e9f8cc853722 190692 science optional relion-bin+gui_1.4+dfsg-4_amd64.deb 7b076981f81e0ebff5a9d703525383c5 5344372 debug optional relion-bin+mpi+gui-dbgsym_1.4+dfsg-4_amd64.deb 1ab2f02829faa177fc5b167bd853d9f5 237496 science optional relion-bin+mpi+gui_1.4+dfsg-4_amd64.deb c6a62dc6cb981d753756eab1b1626a54 5130160 debug optional relion-bin+mpi-dbgsym_1.4+dfsg-4_amd64.deb 26bc4d1184e448eddbd765198e843ac5 237228 science optional relion-bin+mpi_1.4+dfsg-4_amd64.deb e245f088ef17e42e4da0f1480a5a039a 3819948 debug optional relion-bin-dbgsym_1.4+dfsg-4_amd64.deb 6c01b139f2df19000aa5e63fec6f1785 189612 science optional relion-bin_1.4+dfsg-4_amd64.deb 537518f28a995f66a888478ea3da7967 13792 science optional relion_1.4+dfsg-4_amd64.buildinfo Sat Jul 17 11:54:10 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/relion_1.4+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/relion_1.4+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/relion_1.4+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/b1/relion_1.4+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.OJXuGa0gcO/b2/relion_1.4+dfsg-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.848s) 0.848s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.640s) 0.639s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jul 17 11:54:13 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 17 11:54:13 UTC 2021 I: relion from buster built successfully and reproducibly on amd64. Sat Jul 17 11:54:15 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jul 17 11:54:15 UTC 2021 I: Submitting 16K b1/relion_1.4+dfsg-4_amd64.buildinfo.asc Sat Jul 17 11:54:17 UTC 2021 I: Submitting 16K b2/relion_1.4+dfsg-4_amd64.buildinfo.asc Sat Jul 17 11:54:17 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 17 11:54:17 UTC 2021 I: Done submitting .buildinfo files. Sat Jul 17 11:54:17 UTC 2021 I: Removing signed relion_1.4+dfsg-4_amd64.buildinfo.asc files: removed './b1/relion_1.4+dfsg-4_amd64.buildinfo.asc' removed './b2/relion_1.4+dfsg-4_amd64.buildinfo.asc'