Tue Aug 10 12:58:19 UTC 2021 I: starting to build ray/buster/amd64 on jenkins on '2021-08-10 12:57' Tue Aug 10 12:58:19 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/31364/console.log Tue Aug 10 12:58:19 UTC 2021 I: Downloading source for buster/ray=2.3.1-6 --2021-08-10 12:58:19-- http://deb.debian.org/debian/pool/main/r/ray/ray_2.3.1-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2082 (2.0K) Saving to: ‘ray_2.3.1-6.dsc’ 0K .. 100% 117M=0s 2021-08-10 12:58:19 (117 MB/s) - ‘ray_2.3.1-6.dsc’ saved [2082/2082] Tue Aug 10 12:58:19 UTC 2021 I: ray_2.3.1-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ray Binary: ray, ray-doc, ray-extra Architecture: any all Version: 2.3.1-6 Maintainer: Debian Med Packaging Team Uploaders: Sébastien Boisvert , Andreas Tille Homepage: http://denovoassembler.sourceforge.net/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/ray Vcs-Git: https://salsa.debian.org/med-team/ray.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11), zlib1g-dev, libbz2-dev, mpi-default-dev Package-List: ray deb science optional arch=any ray-doc deb doc optional arch=all ray-extra deb science optional arch=all Checksums-Sha1: cf7de83f671b38b51177de21604944c49e161f89 449727 ray_2.3.1.orig.tar.bz2 b8aeb6869df8f810f3b43ece79438feac9f1a5bc 211564 ray_2.3.1-6.debian.tar.xz Checksums-Sha256: 3122edcdf97272af3014f959eab9a0f0e5a02c8ffc897d842b06b06ccd748036 449727 ray_2.3.1.orig.tar.bz2 16f8e47c7d81f814280f2f2554d74a6ec9fb1881827d483cd8f630c6d2849df0 211564 ray_2.3.1-6.debian.tar.xz Files: 82f693c4db60af4328263c9279701009 449727 ray_2.3.1.orig.tar.bz2 89aa8041e42c4609ab40e17e891136bf 211564 ray_2.3.1-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAlr9fuIACgkQr8/sjmac 4cLoRRAAkVf/fZZMeit8mddZVGK0odLSYkJRXQHtrU45gq8l8kJSsLriNshDY+ES rWUv6ZoMRsg1yLtGYglVYEf9/KufyZDDGX6PhUws9iFiSB91ZY4XO/IBnvm1xNv+ GAhgZuq0x7rKwvTOV7AzzPebgjjQPN+uCV5FxkKUPNTU8QnoRYEUfiMC+RitMyXW fJeQK20Y2OGjjFkoPI5js4Wtv0eU9j+NDHQLFCoTxXlpFuezRl73YfUTBtLuBgIe M0J0sy4iQ65lF+mV6ViGowVtJGodF6v/hp5ykWcl+65ByAJ/wR1981SCQ5X523YL DPYoLkl6soK5ehrLmmH0yM4F6feS7sMEak5PmujkkLK1nuseYlvZF1565Fa/4NaC 88Ue4gLbkHE/eFnom5PGujfcgih8cEy+/qRxKyIZ5+wm/H/OjlYlsqglpbbmpnKn eRwV/qLefQqa91TH6RSoVrp7ZE6McS3kZ7UdaePgdDtS71HifEKLx2SEjNDwzXZI b3waSZORaxj39FbE7SLm8Ij5TyYYlkr2d2hiGcWcCRPoFDOWpRR5ik9B8SJbR7/q EMpUVkyVO/wO9h3EA8zbxPSDvDqyPWSoReBlyMNrm+18NrL9ispXg4s/zffgQrtb np+lY+xKi/bik+Eknq4CAZ5J/NyF87CplPOykPz7P4qp1oYMIa0= =sexc -----END PGP SIGNATURE----- Tue Aug 10 12:58:19 UTC 2021 I: Checking whether the package is not for us Tue Aug 10 12:58:19 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Tue Aug 10 12:58:19 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Tue Aug 10 13:01:56 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 10 00:58:21 -12 2021 I: pbuilder-time-stamp: 1628600301 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ray_2.3.1-6.dsc] I: copying [./ray_2.3.1.orig.tar.bz2] I: copying [./ray_2.3.1-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu May 17 01:08:50 2018 -12 gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ray_2.3.1-6.dsc dpkg-source: info: extracting ray in ray-2.3.1 dpkg-source: info: unpacking ray_2.3.1.orig.tar.bz2 dpkg-source: info: unpacking ray_2.3.1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying mips.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying stable-link-order.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25458/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d0ef626f219a49e186049da76052ac45' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25458' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.DzTZGVoyxo/pbuilderrc_iaB4 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.DzTZGVoyxo/b1 --logfile b1/build.log ray_2.3.1-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 20:24 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/25458/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), zlib1g-dev, libbz2-dev, mpi-default-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libbz2-dev{a} libcroco3{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libpsm-infinipath1{a} libpsm2-2{a} librdmacm1{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 30.3 MB of archives. After unpacking 111 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get: 73 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Fetched 30.3 MB in 1s (34.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../38-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../39-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../40-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../41-libnl-3-200_3.4.0-1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../42-libnl-route-3-200_3.4.0-1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.4.0-1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../43-libibverbs1_22.1-1_amd64.deb ... Unpacking libibverbs1:amd64 (22.1-1) ... 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Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../61-ocl-icd-libopencl1_2.2.12-2_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../62-libhwloc-plugins_1.11.12-3_amd64.deb ... Unpacking libhwloc-plugins:amd64 (1.11.12-3) ... Selecting previously unselected package libnl-3-dev:amd64. Preparing to unpack .../63-libnl-3-dev_3.4.0-1_amd64.deb ... Unpacking libnl-3-dev:amd64 (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:amd64. Preparing to unpack .../64-libnl-route-3-dev_3.4.0-1_amd64.deb ... Unpacking libnl-route-3-dev:amd64 (3.4.0-1) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../65-libibverbs-dev_22.1-1_amd64.deb ... Unpacking libibverbs-dev:amd64 (22.1-1) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../66-libpmix2_3.1.2-3_amd64.deb ... Unpacking libpmix2:amd64 (3.1.2-3) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../67-libopenmpi3_3.1.3-11_amd64.deb ... Unpacking libopenmpi3:amd64 (3.1.3-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../68-openmpi-common_3.1.3-11_all.deb ... Unpacking openmpi-common (3.1.3-11) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../69-openmpi-bin_3.1.3-11_amd64.deb ... Unpacking openmpi-bin (3.1.3-11) ... Selecting previously unselected package libopenmpi-dev:amd64. Preparing to unpack .../70-libopenmpi-dev_3.1.3-11_amd64.deb ... Unpacking libopenmpi-dev:amd64 (3.1.3-11) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../71-mpi-default-dev_1.13_amd64.deb ... Unpacking mpi-default-dev (1.13) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../72-zlib1g-dev_1%3a1.2.11.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u1) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libtool (2.4.6-9) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:amd64 (22.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/ray-2.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ray dpkg-buildpackage: info: source version 2.3.1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ray-2.3.1' dh_auto_clean -- CXXFLAGS="-g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make -j15 clean "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make[2]: Entering directory '/build/ray-2.3.1' make -w -j15 --jobserver-auth=3,4 -C RayPlatform clean make[3]: Entering directory '/build/ray-2.3.1' make[3]: warning: -j15 forced in submake: resetting jobserver mode. echo CLEAN RayPlatform CLEAN RayPlatform rm -f libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/build/ray-2.3.1/RayPlatform' echo CLEAN Ray plugins CLEAN Ray plugins rm -f Ray PREFIX code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o libRay.a libRayPlatform.a code/application_core/ray_main.o make[2]: Leaving directory '/build/ray-2.3.1' rm -rf install-prefix rm -f README.Ray README.RayPlatform make[1]: Leaving directory '/build/ray-2.3.1' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/ray-2.3.1' dh_auto_build -- CXXFLAGS="-g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" DEBLDFLAGS="-Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make -j15 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" "DEBLDFLAGS=-Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make[2]: Entering directory '/build/ray-2.3.1' echo " CXX code/application_core/ray_main.o" CXX code/application_core/ray_main.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o echo " CXX code/Amos/Amos.o" CXX code/Amos/Amos.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o echo " CXX code/CoverageGatherer/CoverageGatherer.o" CXX code/CoverageGatherer/CoverageGatherer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o echo " CXX code/CoverageGatherer/CoverageDistribution.o" CXX code/CoverageGatherer/CoverageDistribution.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o echo " CXX code/EdgePurger/EdgePurger.o" CXX code/EdgePurger/EdgePurger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o echo " CXX code/EdgePurger/EdgePurgerWorker.o" CXX code/EdgePurger/EdgePurgerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o echo " CXX code/Example/Example.o" CXX code/Example/Example.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o echo " CXX code/FusionData/FusionData.o" CXX code/FusionData/FusionData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o echo " CXX code/FusionTaskCreator/FusionWorker.o" CXX code/FusionTaskCreator/FusionWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionWorker.cpp -o code/FusionTaskCreator/FusionWorker.o echo " CXX code/FusionTaskCreator/FusionTaskCreator.o" CXX code/FusionTaskCreator/FusionTaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionTaskCreator.cpp -o code/FusionTaskCreator/FusionTaskCreator.o echo " CXX code/GeneOntology/KeyEncoder.o" CXX code/GeneOntology/KeyEncoder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/KeyEncoder.cpp -o code/GeneOntology/KeyEncoder.o echo " CXX code/GeneOntology/GeneOntology.o" CXX code/GeneOntology/GeneOntology.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/GeneOntology.cpp -o code/GeneOntology/GeneOntology.o echo " CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o" CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/GenomeNeighbourhood.cpp -o code/GenomeNeighbourhood/GenomeNeighbourhood.o echo " CXX code/GenomeNeighbourhood/Neighbour.o" CXX code/GenomeNeighbourhood/Neighbour.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/Neighbour.cpp -o code/GenomeNeighbourhood/Neighbour.o echo " CXX code/GenomeNeighbourhood/NeighbourPair.o" CXX code/GenomeNeighbourhood/NeighbourPair.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/NeighbourPair.cpp -o code/GenomeNeighbourhood/NeighbourPair.o echo " CXX code/JoinerTaskCreator/JoinerWorker.o" CXX code/JoinerTaskCreator/JoinerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerWorker.cpp -o code/JoinerTaskCreator/JoinerWorker.o echo " CXX code/JoinerTaskCreator/JoinerTaskCreator.o" CXX code/JoinerTaskCreator/JoinerTaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerTaskCreator.cpp -o code/JoinerTaskCreator/JoinerTaskCreator.o echo " CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o" CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/KmerAcademyBuilder.cpp -o code/KmerAcademyBuilder/KmerAcademyBuilder.o echo " CXX code/KmerAcademyBuilder/BloomFilter.o" CXX code/KmerAcademyBuilder/BloomFilter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/BloomFilter.cpp -o code/KmerAcademyBuilder/BloomFilter.o echo " CXX code/KmerAcademyBuilder/Kmer.o" CXX code/KmerAcademyBuilder/Kmer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/Kmer.cpp -o code/KmerAcademyBuilder/Kmer.o echo " CXX code/Library/LibraryPeakFinder.o" CXX code/Library/LibraryPeakFinder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryPeakFinder.cpp -o code/Library/LibraryPeakFinder.o echo " CXX code/Library/LibraryWorker.o" CXX code/Library/LibraryWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryWorker.cpp -o code/Library/LibraryWorker.o echo " CXX code/Library/Library.o" CXX code/Library/Library.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/Library.cpp -o code/Library/Library.o echo " CXX code/MachineHelper/MachineHelper.o" CXX code/MachineHelper/MachineHelper.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MachineHelper/MachineHelper.cpp -o code/MachineHelper/MachineHelper.o echo " CXX code/MessageProcessor/MessageProcessor.o" CXX code/MessageProcessor/MessageProcessor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MessageProcessor/MessageProcessor.cpp -o code/MessageProcessor/MessageProcessor.o echo " CXX code/Mock/Parameters.o" CXX code/Mock/Parameters.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Parameters.cpp -o code/Mock/Parameters.o echo " CXX code/Mock/common_functions.o" CXX code/Mock/common_functions.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/common_functions.cpp -o code/Mock/common_functions.o echo " CXX code/Mock/Mock.o" CXX code/Mock/Mock.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Mock.cpp -o code/Mock/Mock.o echo " CXX code/NetworkTest/NetworkTest.o" CXX code/NetworkTest/NetworkTest.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/NetworkTest/NetworkTest.cpp -o code/NetworkTest/NetworkTest.o echo " CXX code/Partitioner/Partitioner.o" CXX code/Partitioner/Partitioner.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Partitioner/Partitioner.cpp -o code/Partitioner/Partitioner.o echo " CXX code/PathEvaluator/PathEvaluator.o" CXX code/PathEvaluator/PathEvaluator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/PathEvaluator/PathEvaluator.cpp -o code/PathEvaluator/PathEvaluator.o echo " CXX code/Scaffolder/Scaffolder.o" CXX code/Scaffolder/Scaffolder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/Scaffolder.cpp -o code/Scaffolder/Scaffolder.o echo " CXX code/Scaffolder/ScaffoldingLink.o" CXX code/Scaffolder/ScaffoldingLink.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingLink.cpp -o code/Scaffolder/ScaffoldingLink.o echo " CXX code/Scaffolder/SummarizedLink.o" CXX code/Scaffolder/SummarizedLink.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/SummarizedLink.cpp -o code/Scaffolder/SummarizedLink.o echo " CXX code/Scaffolder/ScaffoldingAlgorithm.o" CXX code/Scaffolder/ScaffoldingAlgorithm.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingAlgorithm.cpp -o code/Scaffolder/ScaffoldingAlgorithm.o echo " CXX code/Scaffolder/ScaffoldingVertex.o" CXX code/Scaffolder/ScaffoldingVertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingVertex.cpp -o code/Scaffolder/ScaffoldingVertex.o echo " CXX code/Scaffolder/ScaffoldingEdge.o" CXX code/Scaffolder/ScaffoldingEdge.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingEdge.cpp -o code/Scaffolder/ScaffoldingEdge.o echo " CXX code/Searcher/Searcher.o" CXX code/Searcher/Searcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/Searcher.cpp -o code/Searcher/Searcher.o echo " CXX code/Searcher/SearchDirectory.o" CXX code/Searcher/SearchDirectory.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/SearchDirectory.cpp -o code/Searcher/SearchDirectory.o echo " CXX code/Searcher/ContigSearchEntry.o" CXX code/Searcher/ContigSearchEntry.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigSearchEntry.cpp -o code/Searcher/ContigSearchEntry.o echo " CXX code/Searcher/ContigHit.o" CXX code/Searcher/ContigHit.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o echo " CXX code/Searcher/ColorSet.o" CXX code/Searcher/ColorSet.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o echo " CXX code/Searcher/VirtualKmerColor.o" CXX code/Searcher/VirtualKmerColor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o echo " CXX code/Searcher/QualityCaller.o" CXX code/Searcher/QualityCaller.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/QualityCaller.cpp -o code/Searcher/QualityCaller.o echo " CXX code/Searcher/DistributionWriter.o" CXX code/Searcher/DistributionWriter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/DistributionWriter.cpp -o code/Searcher/DistributionWriter.o code/Searcher/SearchDirectory.cpp: In member function 'void SearchDirectory::readLineFromFile(char*, int)': code/Searcher/SearchDirectory.cpp:320:7: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,length,m_currentFileStream); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ echo " CXX code/Searcher/ColoredPeakFinder.o" CXX code/Searcher/ColoredPeakFinder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColoredPeakFinder.cpp -o code/Searcher/ColoredPeakFinder.o echo " CXX code/SeedExtender/SeedExtender.o" CXX code/SeedExtender/SeedExtender.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/SeedExtender.cpp -o code/SeedExtender/SeedExtender.o echo " CXX code/SeedExtender/Direction.o" CXX code/SeedExtender/Direction.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Direction.cpp -o code/SeedExtender/Direction.o echo " CXX code/SeedExtender/VertexMessenger.o" CXX code/SeedExtender/VertexMessenger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/VertexMessenger.cpp -o code/SeedExtender/VertexMessenger.o echo " CXX code/SeedExtender/ReadFetcher.o" CXX code/SeedExtender/ReadFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ReadFetcher.cpp -o code/SeedExtender/ReadFetcher.o echo " CXX code/SeedExtender/BubbleTool.o" CXX code/SeedExtender/BubbleTool.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/BubbleTool.cpp -o code/SeedExtender/BubbleTool.o echo " CXX code/SeedExtender/Chooser.o" CXX code/SeedExtender/Chooser.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Chooser.cpp -o code/SeedExtender/Chooser.o echo " CXX code/SeedExtender/OpenAssemblerChooser.o" CXX code/SeedExtender/OpenAssemblerChooser.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/OpenAssemblerChooser.cpp -o code/SeedExtender/OpenAssemblerChooser.o echo " CXX code/SeedExtender/TipWatchdog.o" CXX code/SeedExtender/TipWatchdog.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/TipWatchdog.cpp -o code/SeedExtender/TipWatchdog.o echo " CXX code/SeedExtender/NovaEngine.o" CXX code/SeedExtender/NovaEngine.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/NovaEngine.cpp -o code/SeedExtender/NovaEngine.o echo " CXX code/SeedExtender/ExtensionElement.o" CXX code/SeedExtender/ExtensionElement.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionElement.cpp -o code/SeedExtender/ExtensionElement.o echo " CXX code/SeedExtender/DepthFirstSearchData.o" CXX code/SeedExtender/DepthFirstSearchData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/DepthFirstSearchData.cpp -o code/SeedExtender/DepthFirstSearchData.o echo " CXX code/SeedExtender/ExtensionData.o" CXX code/SeedExtender/ExtensionData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionData.cpp -o code/SeedExtender/ExtensionData.o echo " CXX code/SeedingData/GraphPath.o" CXX code/SeedingData/GraphPath.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/GraphPath.cpp -o code/SeedingData/GraphPath.o echo " CXX code/SeedingData/SeedWorker.o" CXX code/SeedingData/SeedWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedWorker.cpp -o code/SeedingData/SeedWorker.o echo " CXX code/SeedingData/SeedingData.o" CXX code/SeedingData/SeedingData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedingData.cpp -o code/SeedingData/SeedingData.o echo " CXX code/SeedingData/PathHandle.o" CXX code/SeedingData/PathHandle.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/PathHandle.cpp -o code/SeedingData/PathHandle.o echo " CXX code/SequencesIndexer/SequencesIndexer.o" CXX code/SequencesIndexer/SequencesIndexer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/SequencesIndexer.cpp -o code/SequencesIndexer/SequencesIndexer.o echo " CXX code/SequencesIndexer/IndexerWorker.o" CXX code/SequencesIndexer/IndexerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/IndexerWorker.cpp -o code/SequencesIndexer/IndexerWorker.o echo " CXX code/SequencesIndexer/PairedRead.o" CXX code/SequencesIndexer/PairedRead.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/PairedRead.cpp -o code/SequencesIndexer/PairedRead.o echo " CXX code/SequencesIndexer/ReadAnnotation.o" CXX code/SequencesIndexer/ReadAnnotation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/ReadAnnotation.cpp -o code/SequencesIndexer/ReadAnnotation.o echo " CXX code/SequencesLoader/SequencesLoader.o" CXX code/SequencesLoader/SequencesLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequencesLoader.cpp -o code/SequencesLoader/SequencesLoader.o echo " CXX code/SequencesLoader/Read.o" CXX code/SequencesLoader/Read.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Read.cpp -o code/SequencesLoader/Read.o echo " CXX code/SequencesLoader/ArrayOfReads.o" CXX code/SequencesLoader/ArrayOfReads.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ArrayOfReads.cpp -o code/SequencesLoader/ArrayOfReads.o echo " CXX code/SequencesLoader/ColorSpaceDecoder.o" CXX code/SequencesLoader/ColorSpaceDecoder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceDecoder.cpp -o code/SequencesLoader/ColorSpaceDecoder.o echo " CXX code/SequencesLoader/ColorSpaceLoader.o" CXX code/SequencesLoader/ColorSpaceLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceLoader.cpp -o code/SequencesLoader/ColorSpaceLoader.o echo " CXX code/SequencesLoader/FastaLoader.o" CXX code/SequencesLoader/FastaLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoader.cpp -o code/SequencesLoader/FastaLoader.o echo " CXX code/SequencesLoader/FastaLoaderForReads.o" CXX code/SequencesLoader/FastaLoaderForReads.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoaderForReads.cpp -o code/SequencesLoader/FastaLoaderForReads.o echo " CXX code/SequencesLoader/FastqLoader.o" CXX code/SequencesLoader/FastqLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqLoader.cpp -o code/SequencesLoader/FastqLoader.o echo " CXX code/SequencesLoader/ExportLoader.o" CXX code/SequencesLoader/ExportLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ExportLoader.cpp -o code/SequencesLoader/ExportLoader.o echo " CXX code/SequencesLoader/LoaderInterface.o" CXX code/SequencesLoader/LoaderInterface.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderInterface.cpp -o code/SequencesLoader/LoaderInterface.o echo " CXX code/SequencesLoader/LoaderFactory.o" CXX code/SequencesLoader/LoaderFactory.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderFactory.cpp -o code/SequencesLoader/LoaderFactory.o echo " CXX code/SequencesLoader/SffLoader.o" CXX code/SequencesLoader/SffLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SffLoader.cpp -o code/SequencesLoader/SffLoader.o echo " CXX code/SequencesLoader/Loader.o" CXX code/SequencesLoader/Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Loader.cpp -o code/SequencesLoader/Loader.o echo " CXX code/SequencesLoader/BufferedReader.o" CXX code/SequencesLoader/BufferedReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BufferedReader.cpp -o code/SequencesLoader/BufferedReader.o echo " CXX code/SequencesLoader/ReadHandle.o" CXX code/SequencesLoader/ReadHandle.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ReadHandle.cpp -o code/SequencesLoader/ReadHandle.o echo " CXX code/SequencesLoader/BzReader.o" CXX code/SequencesLoader/BzReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BzReader.cpp -o code/SequencesLoader/BzReader.o echo " CXX code/SequencesLoader/FastqBz2Loader.o" CXX code/SequencesLoader/FastqBz2Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqBz2Loader.cpp -o code/SequencesLoader/FastqBz2Loader.o echo " CXX code/SequencesLoader/FastaBz2Loader.o" CXX code/SequencesLoader/FastaBz2Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaBz2Loader.cpp -o code/SequencesLoader/FastaBz2Loader.o echo " CXX code/SequencesLoader/FastqGzLoader.o" CXX code/SequencesLoader/FastqGzLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqGzLoader.cpp -o code/SequencesLoader/FastqGzLoader.o echo " CXX code/SequencesLoader/FastaGzLoader.o" CXX code/SequencesLoader/FastaGzLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaGzLoader.cpp -o code/SequencesLoader/FastaGzLoader.o echo " CXX code/SequencesLoader/SequenceFileDetector.o" CXX code/SequencesLoader/SequenceFileDetector.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequenceFileDetector.cpp -o code/SequencesLoader/SequenceFileDetector.o echo " CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o" CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.cpp -o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o echo " CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o" CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnihilationWorker.cpp -o code/SpuriousSeedAnnihilator/AnnihilationWorker.o echo " CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o echo " CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o" CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AttributeFetcher.cpp -o code/SpuriousSeedAnnihilator/AttributeFetcher.o echo " CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o" CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnotationFetcher.cpp -o code/SpuriousSeedAnnihilator/AnnotationFetcher.o echo " CXX code/SpuriousSeedAnnihilator/NanoMerger.o" CXX code/SpuriousSeedAnnihilator/NanoMerger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/NanoMerger.cpp -o code/SpuriousSeedAnnihilator/NanoMerger.o echo " CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedMergingWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o echo " CXX code/SpuriousSeedAnnihilator/GraphExplorer.o" CXX code/SpuriousSeedAnnihilator/GraphExplorer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphExplorer.cpp -o code/SpuriousSeedAnnihilator/GraphExplorer.o echo " CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o" CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphSearchResult.cpp -o code/SpuriousSeedAnnihilator/GraphSearchResult.o echo " CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o" CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp -o code/SpuriousSeedAnnihilator/SeedGossipSolver.o echo " CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o" CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GossipAssetManager.cpp -o code/SpuriousSeedAnnihilator/GossipAssetManager.o echo " CXX code/Surveyor/Mother.o" CXX code/Surveyor/Mother.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/Mother.cpp -o code/Surveyor/Mother.o echo " CXX code/Surveyor/StoreKeeper.o" CXX code/Surveyor/StoreKeeper.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/StoreKeeper.cpp -o code/Surveyor/StoreKeeper.o echo " CXX code/Surveyor/GenomeGraphReader.o" CXX code/Surveyor/GenomeGraphReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/GenomeGraphReader.cpp -o code/Surveyor/GenomeGraphReader.o echo " CXX code/Surveyor/CoalescenceManager.o" CXX code/Surveyor/CoalescenceManager.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/CoalescenceManager.cpp -o code/Surveyor/CoalescenceManager.o echo " CXX code/Surveyor/ExperimentVertex.o" CXX code/Surveyor/ExperimentVertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/ExperimentVertex.cpp -o code/Surveyor/ExperimentVertex.o echo " CXX code/Surveyor/MatrixOwner.o" CXX code/Surveyor/MatrixOwner.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/MatrixOwner.cpp -o code/Surveyor/MatrixOwner.o echo " CXX code/TaxonomyViewer/TaxonomyViewer.o" CXX code/TaxonomyViewer/TaxonomyViewer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomyViewer.cpp -o code/TaxonomyViewer/TaxonomyViewer.o echo " CXX code/TaxonomyViewer/GenomeToTaxonLoader.o" CXX code/TaxonomyViewer/GenomeToTaxonLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/GenomeToTaxonLoader.cpp -o code/TaxonomyViewer/GenomeToTaxonLoader.o echo " CXX code/TaxonomyViewer/TaxonomicTreeLoader.o" CXX code/TaxonomyViewer/TaxonomicTreeLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomicTreeLoader.cpp -o code/TaxonomyViewer/TaxonomicTreeLoader.o echo " CXX code/TaxonomyViewer/TaxonNameLoader.o" CXX code/TaxonomyViewer/TaxonNameLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonNameLoader.cpp -o code/TaxonomyViewer/TaxonNameLoader.o echo " CXX code/VerticesExtractor/VerticesExtractor.o" CXX code/VerticesExtractor/VerticesExtractor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/VerticesExtractor.cpp -o code/VerticesExtractor/VerticesExtractor.o echo " CXX code/VerticesExtractor/GridTable.o" CXX code/VerticesExtractor/GridTable.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTable.cpp -o code/VerticesExtractor/GridTable.o echo " CXX code/VerticesExtractor/GridTableIterator.o" CXX code/VerticesExtractor/GridTableIterator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTableIterator.cpp -o code/VerticesExtractor/GridTableIterator.o echo " CXX code/VerticesExtractor/Vertex.o" CXX code/VerticesExtractor/Vertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/Vertex.cpp -o code/VerticesExtractor/Vertex.o echo " CXX code/application_core/Machine.o" CXX code/application_core/Machine.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o make -w -j15 --jobserver-auth=3,4 -C RayPlatform make[3]: Entering directory '/build/ray-2.3.1' make[3]: warning: -j15 forced in submake: resetting jobserver mode. echo " CXX RayPlatform/memory/ReusableMemoryStore.o" CXX RayPlatform/memory/ReusableMemoryStore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp echo " CXX RayPlatform/memory/MyAllocator.o" CXX RayPlatform/memory/MyAllocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp echo " CXX RayPlatform/memory/RingAllocator.o" CXX RayPlatform/memory/RingAllocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp echo " CXX RayPlatform/memory/allocator.o" CXX RayPlatform/memory/allocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp echo " CXX RayPlatform/memory/DefragmentationGroup.o" CXX RayPlatform/memory/DefragmentationGroup.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o" echo " CXX RayPlatform/memory/DefragmentationLane.o" CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o CXX RayPlatform/memory/DefragmentationLane.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp echo " CXX RayPlatform/memory/DirtyBuffer.o" CXX RayPlatform/memory/DirtyBuffer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp echo " CXX RayPlatform/routing/ConnectionGraph.o" CXX RayPlatform/routing/ConnectionGraph.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp echo " CXX RayPlatform/routing/GraphImplementation.o" CXX RayPlatform/routing/GraphImplementation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp echo " CXX RayPlatform/routing/GraphImplementationRandom.o" CXX RayPlatform/routing/GraphImplementationRandom.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp echo " CXX RayPlatform/routing/GraphImplementationComplete.o" CXX RayPlatform/routing/GraphImplementationComplete.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationComplete.cpp echo " CXX RayPlatform/routing/GraphImplementationDeBruijn.o" CXX RayPlatform/routing/GraphImplementationDeBruijn.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationDeBruijn.cpp echo " CXX RayPlatform/routing/GraphImplementationKautz.o" CXX RayPlatform/routing/GraphImplementationKautz.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" CXX RayPlatform/routing/GraphImplementationExperimental.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp echo " CXX RayPlatform/routing/GraphImplementationGroup.o" CXX RayPlatform/routing/GraphImplementationGroup.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp echo " CXX RayPlatform/routing/Polytope.o" CXX RayPlatform/routing/Polytope.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp echo " CXX RayPlatform/routing/Torus.o" CXX RayPlatform/routing/Torus.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp echo " CXX RayPlatform/communication/mpi_tags.o" CXX RayPlatform/communication/mpi_tags.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/mpi_tags.o RayPlatform/communication/mpi_tags.cpp echo " CXX RayPlatform/communication/VirtualCommunicator.o" CXX RayPlatform/communication/VirtualCommunicator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/VirtualCommunicator.cpp echo " CXX RayPlatform/communication/BufferedData.o" CXX RayPlatform/communication/BufferedData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/BufferedData.o RayPlatform/communication/BufferedData.cpp echo " CXX RayPlatform/communication/Message.o" CXX RayPlatform/communication/Message.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/Message.o RayPlatform/communication/Message.cpp echo " CXX RayPlatform/communication/MessagesHandler.o" CXX RayPlatform/communication/MessagesHandler.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessagesHandler.cpp echo " CXX RayPlatform/communication/MessageQueue.o" CXX RayPlatform/communication/MessageQueue.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageQueue.cpp echo " CXX RayPlatform/communication/MessageRouter.o" CXX RayPlatform/communication/MessageRouter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageRouter.o RayPlatform/communication/MessageRouter.cpp echo " CXX RayPlatform/scheduling/VirtualProcessor.o" CXX RayPlatform/scheduling/VirtualProcessor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/VirtualProcessor.cpp echo " CXX RayPlatform/scheduling/TaskCreator.o" CXX RayPlatform/scheduling/TaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/TaskCreator.cpp echo " CXX RayPlatform/scheduling/SwitchMan.o" CXX RayPlatform/scheduling/SwitchMan.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/SwitchMan.o RayPlatform/scheduling/SwitchMan.cpp echo " CXX RayPlatform/core/ComputeCore.o" CXX RayPlatform/core/ComputeCore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/ComputeCore.o RayPlatform/core/ComputeCore.cpp echo " CXX RayPlatform/core/MiniRank.o" CXX RayPlatform/core/MiniRank.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/MiniRank.o RayPlatform/core/MiniRank.cpp echo " CXX RayPlatform/core/slave_modes.o" CXX RayPlatform/core/slave_modes.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/slave_modes.o RayPlatform/core/slave_modes.cpp echo " CXX RayPlatform/core/OperatingSystem.o" CXX RayPlatform/core/OperatingSystem.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/OperatingSystem.o RayPlatform/core/OperatingSystem.cpp echo " CXX RayPlatform/core/master_modes.o" CXX RayPlatform/core/master_modes.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/master_modes.o RayPlatform/core/master_modes.cpp echo " CXX RayPlatform/core/statistics.o" CXX RayPlatform/core/statistics.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/statistics.o RayPlatform/core/statistics.cpp echo " CXX RayPlatform/plugins/CorePlugin.o" CXX RayPlatform/plugins/CorePlugin.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/CorePlugin.cpp echo " CXX RayPlatform/plugins/RegisteredPlugin.o" CXX RayPlatform/plugins/RegisteredPlugin.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/plugins/RegisteredPlugin.cpp echo " CXX RayPlatform/structures/StaticVector.o" CXX RayPlatform/structures/StaticVector.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/structures/StaticVector.o RayPlatform/structures/StaticVector.cpp echo " CXX RayPlatform/profiling/Profiler.o" CXX RayPlatform/profiling/Profiler.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Profiler.cpp echo " CXX RayPlatform/profiling/Derivative.o" CXX RayPlatform/profiling/Derivative.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Derivative.o RayPlatform/profiling/Derivative.cpp echo " CXX RayPlatform/profiling/TickLogger.o" CXX RayPlatform/profiling/TickLogger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TickLogger.cpp echo " CXX RayPlatform/profiling/TimePrinter.o" CXX RayPlatform/profiling/TimePrinter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/TimePrinter.cpp echo " CXX RayPlatform/profiling/ProcessStatus.o" CXX RayPlatform/profiling/ProcessStatus.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/ProcessStatus.o RayPlatform/profiling/ProcessStatus.cpp echo " CXX RayPlatform/handlers/MasterModeExecutor.o" CXX RayPlatform/handlers/MasterModeExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp echo " CXX RayPlatform/handlers/SlaveModeExecutor.o" CXX RayPlatform/handlers/SlaveModeExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp echo " CXX RayPlatform/handlers/MessageTagExecutor.o" CXX RayPlatform/handlers/MessageTagExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp echo " CXX RayPlatform/cryptography/crypto.o" CXX RayPlatform/cryptography/crypto.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/cryptography/crypto.o RayPlatform/cryptography/crypto.cpp echo " CXX RayPlatform/store/KeyValueStore.o" CXX RayPlatform/store/KeyValueStore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStore.cpp echo " CXX RayPlatform/store/KeyValueStoreItem.o" CXX RayPlatform/store/KeyValueStoreItem.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreItem.cpp echo " CXX RayPlatform/store/KeyValueStoreRequest.o" CXX RayPlatform/store/KeyValueStoreRequest.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/store/KeyValueStoreRequest.cpp echo " CXX RayPlatform/actors/Actor.o" CXX RayPlatform/actors/Actor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Actor.o RayPlatform/actors/Actor.cpp echo " CXX RayPlatform/actors/Playground.o" CXX RayPlatform/actors/Playground.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Playground.o RayPlatform/actors/Playground.cpp echo " CXX RayPlatform/files/FileReader.o" CXX RayPlatform/files/FileReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/files/FileReader.o RayPlatform/files/FileReader.cpp echo " AR libRayPlatform.a" AR libRayPlatform.a ar rcs libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/build/ray-2.3.1/RayPlatform' cp RayPlatform/libRayPlatform.a libRayPlatform.a echo " AR libRay.a" AR libRay.a ar rcs libRay.a code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o echo " LD Ray" LD Ray mpicxx code/application_core/ray_main.o libRay.a libRayPlatform.a -oRay -lz -lbz2 -Wl,-z,relro -Wl,-z,now -lpthread echo install-prefix > PREFIX make[2]: Leaving directory '/build/ray-2.3.1' #Rename 2 docs to make more sence in package context cp README.md README.Ray cp RayPlatform/README.md README.RayPlatform cp RayPlatform/README.md RayPlatform/README make[1]: Leaving directory '/build/ray-2.3.1' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j15 install DESTDIR=/build/ray-2.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ray-2.3.1' mkdir -p install-prefix echo "" echo "Installing Ray to install-prefix" Installing Ray to install-prefix echo "" cp LICENSE.txt install-prefix cp gpl-3.0.txt install-prefix cp RayPlatform/lgpl-3.0.txt install-prefix cp Ray install-prefix cp -r Documentation install-prefix cp README.md install-prefix cp MANUAL_PAGE.txt install-prefix cp AUTHORS install-prefix cp -r scripts REFIX mkdir install-prefix/RayPlatform cp RayPlatform/AUTHORS install-prefix/RayPlatform cp RayPlatform/README.md install-prefix/RayPlatform cp -r RayPlatform/Documentation install-prefix/RayPlatform make[1]: Leaving directory '/build/ray-2.3.1' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ray' in '../ray_2.3.1-6_amd64.deb'. dpkg-deb: building package 'ray-extra' in '../ray-extra_2.3.1-6_all.deb'. dpkg-deb: building package 'ray-doc' in '../ray-doc_2.3.1-6_all.deb'. dpkg-deb: building package 'ray-dbgsym' in '../ray-dbgsym_2.3.1-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ray_2.3.1-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25458 and its subdirectories I: Current time: Tue Aug 10 01:01:55 -12 2021 I: pbuilder-time-stamp: 1628600515 Tue Aug 10 13:01:56 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Aug 10 13:01:56 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Aug 10 13:03:20 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Aug 10 13:03:21 UTC 2021 I: ray_2.3.1-6_amd64.changes: Format: 1.8 Date: Thu, 17 May 2018 13:03:55 +0000 Source: ray Binary: ray ray-dbgsym ray-doc ray-extra Architecture: amd64 all Version: 2.3.1-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Graham Inggs Description: ray - de novo genome assemblies of next-gen sequencing data ray-doc - documentation for ray parallel de novo genome assembler ray-extra - Scripts and XSL sheets for post-processing for ray Changes: ray (2.3.1-6) unstable; urgency=medium . * Team upload . [ Nadiya Sitdykova ] * Get rid of ssh dependency * Allow mpi run without ssh dependency . [ Graham Inggs ] * Allow node oversubscription in autopkgtest * Switch to debhelper 11 * Use HTTPS for copyright format * Update Vcs-* URIs for move to salsa.debian.org * Remove trailing whitespace from d/changelog, d/control and d/rules * Bump Standards-Version to 4.1.4, no further changes Checksums-Sha1: a365a5d7fab261f26bfa496d91dca6e535efa4a0 18738420 ray-dbgsym_2.3.1-6_amd64.deb a9abbbbc48ebfdde0c7f491afb7547b3afcb48ef 45472 ray-doc_2.3.1-6_all.deb f2e971b10335fb482570f45a9cb06e42410a5cca 12432 ray-extra_2.3.1-6_all.deb 2cf3652da7714b84e0e63d71e2d00076dc9a5086 6489 ray_2.3.1-6_amd64.buildinfo d23927ad53ff039ee27f0680497f45b4a2a9420f 826996 ray_2.3.1-6_amd64.deb Checksums-Sha256: 47c2fd51baf0b7709f37c991487af5a056c816a46b8b8a68bada229c9a702c55 18738420 ray-dbgsym_2.3.1-6_amd64.deb 442c4cff902ccc9c4e82b9ddef7339129641cbe11efa797b00cf59bf07824eed 45472 ray-doc_2.3.1-6_all.deb 67852d41b67360d802dc0e02ea0bf37455be9b2e74da553e8f43674a6994a778 12432 ray-extra_2.3.1-6_all.deb 688476acc6b6b367a94d3cb291cf8fe8290ce7d855390bcde8a7376e52e8cb91 6489 ray_2.3.1-6_amd64.buildinfo ef4735bc0ede063920a1ecd4f0273239dea379fac9442fa97d78bf22175998f5 826996 ray_2.3.1-6_amd64.deb Files: 604379463afe50acf7331ccd4ca31fbf 18738420 debug optional ray-dbgsym_2.3.1-6_amd64.deb 83df66043aa8ac0fdd0bf2a1c7398406 45472 doc optional ray-doc_2.3.1-6_all.deb c0d481a6354ee18a3ea26d0d1af3dd4b 12432 science optional ray-extra_2.3.1-6_all.deb 4336c5aa05bee4dc8956049dc7e09888 6489 science optional ray_2.3.1-6_amd64.buildinfo 2220ff031d7eee4093b4143efc623933 826996 science optional ray_2.3.1-6_amd64.deb Tue Aug 10 13:03:22 UTC 2021 I: diffoscope 180 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.DzTZGVoyxo/ray_2.3.1-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.DzTZGVoyxo/ray_2.3.1-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.DzTZGVoyxo/ray_2.3.1-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.DzTZGVoyxo/b1/ray_2.3.1-6_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.DzTZGVoyxo/b2/ray_2.3.1-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.163s) 1.163s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.404s) 0.404s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 10 13:03:27 UTC 2021 I: diffoscope 180 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 10 13:03:27 UTC 2021 I: ray from buster built successfully and reproducibly on amd64. Tue Aug 10 13:03:30 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 10 13:03:30 UTC 2021 I: Submitting 8.0K b1/ray_2.3.1-6_amd64.buildinfo.asc Tue Aug 10 13:03:32 UTC 2021 I: Submitting 8.0K b2/ray_2.3.1-6_amd64.buildinfo.asc Tue Aug 10 13:03:33 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 10 13:03:33 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 10 13:03:33 UTC 2021 I: Removing signed ray_2.3.1-6_amd64.buildinfo.asc files: removed './b1/ray_2.3.1-6_amd64.buildinfo.asc' removed './b2/ray_2.3.1-6_amd64.buildinfo.asc'